pharmaobservatory 0.1.2 → 0.1.4

data/lib/pharmaobservatory/models/biomarker_publishing_companies_row.rb

@@ -0,0 +1,368 @@
+=begin
+#Pharma Observatory Public REST API
+
+#Read-only REST API over the Pharma Observatory biomedical data platform. Reference: https://pharmaobservatory.com/api-reference
+
+The version of the OpenAPI document: 1.0.0
+
+Generated by: https://openapi-generator.tech
+Generator version: 7.13.0
+
+=end
+
+require 'date'
+require 'time'
+
+module PharmaObservatory
+  # One row of the biomarker_publishing_companies dataset: one row per biomarker gene and company. A grouped request returns the group columns and the measures instead, as additional properties.
+  class BiomarkerPublishingCompaniesRow
+    # The biomarker route key of the gene the papers name (the gene symbol); the entry key for the biomarkers object type.
+    attr_accessor :route_key
+
+    # The gene symbol.
+    attr_accessor :gene_symbol
+
+    # Company level: the publisher's company.
+    attr_accessor :publisher_company_id
+
+    # Display name of the publisher's company.
+    attr_accessor :publisher_company_name
+
+    # Group level: the publisher's current ultimate parent company; a root company's group is itself.
+    attr_accessor :publisher_group_id
+
+    # Display name of the publisher's group.
+    attr_accessor :publisher_group_name
+
+    # Papers that name the gene from the company's organizations (a consortium paper is excluded).
+    attr_accessor :n_publications
+
+    # The company's organizations the papers reach.
+    attr_accessor :n_member_orgs
+
+    # Strongest affiliation match tier.
+    attr_accessor :best_match_tier
+
+    # Earliest publication year.
+    attr_accessor :first_pub_year
+
+    # Latest publication year.
+    attr_accessor :last_pub_year
+
+    # A sample of the supporting PubMed ids.
+    attr_accessor :supporting_pmids
+
+    # True when the sample is shorter than the paper count.
+    attr_accessor :supporting_pmids_truncated
+
+    # Papers left out because they name too many organizations.
+    attr_accessor :n_papers_excluded_as_consortium
+
+    # Attribute mapping from ruby-style variable name to JSON key.
+    def self.attribute_map
+      {
+        :'route_key' => :'route_key',
+        :'gene_symbol' => :'gene_symbol',
+        :'publisher_company_id' => :'publisher_company_id',
+        :'publisher_company_name' => :'publisher_company_name',
+        :'publisher_group_id' => :'publisher_group_id',
+        :'publisher_group_name' => :'publisher_group_name',
+        :'n_publications' => :'n_publications',
+        :'n_member_orgs' => :'n_member_orgs',
+        :'best_match_tier' => :'best_match_tier',
+        :'first_pub_year' => :'first_pub_year',
+        :'last_pub_year' => :'last_pub_year',
+        :'supporting_pmids' => :'supporting_pmids',
+        :'supporting_pmids_truncated' => :'supporting_pmids_truncated',
+        :'n_papers_excluded_as_consortium' => :'n_papers_excluded_as_consortium'
+      }
+    end
+
+    # Returns attribute mapping this model knows about
+    def self.acceptable_attribute_map
+      attribute_map
+    end
+
+    # Returns all the JSON keys this model knows about
+    def self.acceptable_attributes
+      acceptable_attribute_map.values
+    end
+
+    # Attribute type mapping.
+    def self.openapi_types
+      {
+        :'route_key' => :'String',
+        :'gene_symbol' => :'String',
+        :'publisher_company_id' => :'String',
+        :'publisher_company_name' => :'String',
+        :'publisher_group_id' => :'String',
+        :'publisher_group_name' => :'String',
+        :'n_publications' => :'Integer',
+        :'n_member_orgs' => :'Integer',
+        :'best_match_tier' => :'String',
+        :'first_pub_year' => :'Integer',
+        :'last_pub_year' => :'Integer',
+        :'supporting_pmids' => :'Array<String>',
+        :'supporting_pmids_truncated' => :'Boolean',
+        :'n_papers_excluded_as_consortium' => :'Integer'
+      }
+    end
+
+    # List of attributes with nullable: true
+    def self.openapi_nullable
+      Set.new([
+        :'route_key',
+        :'gene_symbol',
+        :'publisher_company_id',
+        :'publisher_company_name',
+        :'publisher_group_id',
+        :'publisher_group_name',
+        :'n_publications',
+        :'n_member_orgs',
+        :'best_match_tier',
+        :'first_pub_year',
+        :'last_pub_year',
+        :'supporting_pmids',
+        :'supporting_pmids_truncated',
+        :'n_papers_excluded_as_consortium'
+      ])
+    end
+
+    # Initializes the object
+    # @param [Hash] attributes Model attributes in the form of hash
+    def initialize(attributes = {})
+      if (!attributes.is_a?(Hash))
+        fail ArgumentError, "The input argument (attributes) must be a hash in `PharmaObservatory::BiomarkerPublishingCompaniesRow` initialize method"
+      end
+
+      # check to see if the attribute exists and convert string to symbol for hash key
+      acceptable_attribute_map = self.class.acceptable_attribute_map
+      attributes = attributes.each_with_object({}) { |(k, v), h|
+        if (!acceptable_attribute_map.key?(k.to_sym))
+          fail ArgumentError, "`#{k}` is not a valid attribute in `PharmaObservatory::BiomarkerPublishingCompaniesRow`. Please check the name to make sure it's valid. List of attributes: " + acceptable_attribute_map.keys.inspect
+        end
+        h[k.to_sym] = v
+      }
+
+      if attributes.key?(:'route_key')
+        self.route_key = attributes[:'route_key']
+      end
+
+      if attributes.key?(:'gene_symbol')
+        self.gene_symbol = attributes[:'gene_symbol']
+      end
+
+      if attributes.key?(:'publisher_company_id')
+        self.publisher_company_id = attributes[:'publisher_company_id']
+      end
+
+      if attributes.key?(:'publisher_company_name')
+        self.publisher_company_name = attributes[:'publisher_company_name']
+      end
+
+      if attributes.key?(:'publisher_group_id')
+        self.publisher_group_id = attributes[:'publisher_group_id']
+      end
+
+      if attributes.key?(:'publisher_group_name')
+        self.publisher_group_name = attributes[:'publisher_group_name']
+      end
+
+      if attributes.key?(:'n_publications')
+        self.n_publications = attributes[:'n_publications']
+      end
+
+      if attributes.key?(:'n_member_orgs')
+        self.n_member_orgs = attributes[:'n_member_orgs']
+      end
+
+      if attributes.key?(:'best_match_tier')
+        self.best_match_tier = attributes[:'best_match_tier']
+      end
+
+      if attributes.key?(:'first_pub_year')
+        self.first_pub_year = attributes[:'first_pub_year']
+      end
+
+      if attributes.key?(:'last_pub_year')
+        self.last_pub_year = attributes[:'last_pub_year']
+      end
+
+      if attributes.key?(:'supporting_pmids')
+        if (value = attributes[:'supporting_pmids']).is_a?(Array)
+          self.supporting_pmids = value
+        end
+      end
+
+      if attributes.key?(:'supporting_pmids_truncated')
+        self.supporting_pmids_truncated = attributes[:'supporting_pmids_truncated']
+      end
+
+      if attributes.key?(:'n_papers_excluded_as_consortium')
+        self.n_papers_excluded_as_consortium = attributes[:'n_papers_excluded_as_consortium']
+      end
+    end
+
+    # Show invalid properties with the reasons. Usually used together with valid?
+    # @return Array for valid properties with the reasons
+    def list_invalid_properties
+      warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
+      invalid_properties = Array.new
+      invalid_properties
+    end
+
+    # Check to see if the all the properties in the model are valid
+    # @return true if the model is valid
+    def valid?
+      warn '[DEPRECATED] the `valid?` method is obsolete'
+      true
+    end
+
+    # Checks equality by comparing each attribute.
+    # @param [Object] Object to be compared
+    def ==(o)
+      return true if self.equal?(o)
+      self.class == o.class &&
+          route_key == o.route_key &&
+          gene_symbol == o.gene_symbol &&
+          publisher_company_id == o.publisher_company_id &&
+          publisher_company_name == o.publisher_company_name &&
+          publisher_group_id == o.publisher_group_id &&
+          publisher_group_name == o.publisher_group_name &&
+          n_publications == o.n_publications &&
+          n_member_orgs == o.n_member_orgs &&
+          best_match_tier == o.best_match_tier &&
+          first_pub_year == o.first_pub_year &&
+          last_pub_year == o.last_pub_year &&
+          supporting_pmids == o.supporting_pmids &&
+          supporting_pmids_truncated == o.supporting_pmids_truncated &&
+          n_papers_excluded_as_consortium == o.n_papers_excluded_as_consortium
+    end
+
+    # @see the `==` method
+    # @param [Object] Object to be compared
+    def eql?(o)
+      self == o
+    end
+
+    # Calculates hash code according to all attributes.
+    # @return [Integer] Hash code
+    def hash
+      [route_key, gene_symbol, publisher_company_id, publisher_company_name, publisher_group_id, publisher_group_name, n_publications, n_member_orgs, best_match_tier, first_pub_year, last_pub_year, supporting_pmids, supporting_pmids_truncated, n_papers_excluded_as_consortium].hash
+    end
+
+    # Builds the object from hash
+    # @param [Hash] attributes Model attributes in the form of hash
+    # @return [Object] Returns the model itself
+    def self.build_from_hash(attributes)
+      return nil unless attributes.is_a?(Hash)
+      attributes = attributes.transform_keys(&:to_sym)
+      transformed_hash = {}
+      openapi_types.each_pair do |key, type|
+        if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = nil
+        elsif type =~ /\AArray<(.*)>/i
+          # check to ensure the input is an array given that the attribute
+          # is documented as an array but the input is not
+          if attributes[attribute_map[key]].is_a?(Array)
+            transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
+          end
+        elsif !attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
+        end
+      end
+      new(transformed_hash)
+    end
+
+    # Deserializes the data based on type
+    # @param string type Data type
+    # @param string value Value to be deserialized
+    # @return [Object] Deserialized data
+    def self._deserialize(type, value)
+      case type.to_sym
+      when :Time
+        Time.parse(value)
+      when :Date
+        Date.parse(value)
+      when :String
+        value.to_s
+      when :Integer
+        value.to_i
+      when :Float
+        value.to_f
+      when :Boolean
+        if value.to_s =~ /\A(true|t|yes|y|1)\z/i
+          true
+        else
+          false
+        end
+      when :Object
+        # generic object (usually a Hash), return directly
+        value
+      when /\AArray<(?<inner_type>.+)>\z/
+        inner_type = Regexp.last_match[:inner_type]
+        value.map { |v| _deserialize(inner_type, v) }
+      when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
+        k_type = Regexp.last_match[:k_type]
+        v_type = Regexp.last_match[:v_type]
+        {}.tap do |hash|
+          value.each do |k, v|
+            hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
+          end
+        end
+      else # model
+        # models (e.g. Pet) or oneOf
+        klass = PharmaObservatory.const_get(type)
+        klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
+      end
+    end
+
+    # Returns the string representation of the object
+    # @return [String] String presentation of the object
+    def to_s
+      to_hash.to_s
+    end
+
+    # to_body is an alias to to_hash (backward compatibility)
+    # @return [Hash] Returns the object in the form of hash
+    def to_body
+      to_hash
+    end
+
+    # Returns the object in the form of hash
+    # @return [Hash] Returns the object in the form of hash
+    def to_hash
+      hash = {}
+      self.class.attribute_map.each_pair do |attr, param|
+        value = self.send(attr)
+        if value.nil?
+          is_nullable = self.class.openapi_nullable.include?(attr)
+          next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
+        end
+
+        hash[param] = _to_hash(value)
+      end
+      hash
+    end
+
+    # Outputs non-array value in the form of hash
+    # For object, use to_hash. Otherwise, just return the value
+    # @param [Object] value Any valid value
+    # @return [Hash] Returns the value in the form of hash
+    def _to_hash(value)
+      if value.is_a?(Array)
+        value.compact.map { |v| _to_hash(v) }
+      elsif value.is_a?(Hash)
+        {}.tap do |hash|
+          value.each { |k, v| hash[k] = _to_hash(v) }
+        end
+      elsif value.respond_to? :to_hash
+        value.to_hash
+      else
+        value
+      end
+    end
+
+  end
+
+end