pharmaobservatory 0.1.2 → 0.1.4

data/lib/pharmaobservatory/models/biomarkers_population_allele_frequency200_response_attribution_inner.rb

@@ -1,315 +0,0 @@
-=begin
-#Pharma Observatory Public REST API
-
-#Read-only REST API over the Pharma Observatory biomedical data platform. Reference: https://pharmaobservatory.com/api-reference
-
-The version of the OpenAPI document: 1.0.0
-
-Generated by: https://openapi-generator.tech
-Generator version: 7.13.0
-
-=end
-
-require 'date'
-require 'time'
-
-module PharmaObservatory
-  class BiomarkersPopulationAlleleFrequency200ResponseAttributionInner
-    attr_accessor :name
-
-    attr_accessor :license
-
-    attr_accessor :href
-
-    attr_accessor :license_href
-
-    # Attribute mapping from ruby-style variable name to JSON key.
-    def self.attribute_map
-      {
-        :'name' => :'name',
-        :'license' => :'license',
-        :'href' => :'href',
-        :'license_href' => :'license_href'
-      }
-    end
-
-    # Returns attribute mapping this model knows about
-    def self.acceptable_attribute_map
-      attribute_map
-    end
-
-    # Returns all the JSON keys this model knows about
-    def self.acceptable_attributes
-      acceptable_attribute_map.values
-    end
-
-    # Attribute type mapping.
-    def self.openapi_types
-      {
-        :'name' => :'String',
-        :'license' => :'String',
-        :'href' => :'String',
-        :'license_href' => :'String'
-      }
-    end
-
-    # List of attributes with nullable: true
-    def self.openapi_nullable
-      Set.new([
-      ])
-    end
-
-    # Initializes the object
-    # @param [Hash] attributes Model attributes in the form of hash
-    def initialize(attributes = {})
-      if (!attributes.is_a?(Hash))
-        fail ArgumentError, "The input argument (attributes) must be a hash in `PharmaObservatory::BiomarkersPopulationAlleleFrequency200ResponseAttributionInner` initialize method"
-      end
-
-      # check to see if the attribute exists and convert string to symbol for hash key
-      acceptable_attribute_map = self.class.acceptable_attribute_map
-      attributes = attributes.each_with_object({}) { |(k, v), h|
-        if (!acceptable_attribute_map.key?(k.to_sym))
-          fail ArgumentError, "`#{k}` is not a valid attribute in `PharmaObservatory::BiomarkersPopulationAlleleFrequency200ResponseAttributionInner`. Please check the name to make sure it's valid. List of attributes: " + acceptable_attribute_map.keys.inspect
-        end
-        h[k.to_sym] = v
-      }
-
-      if attributes.key?(:'name')
-        self.name = attributes[:'name']
-      else
-        self.name = nil
-      end
-
-      if attributes.key?(:'license')
-        self.license = attributes[:'license']
-      else
-        self.license = nil
-      end
-
-      if attributes.key?(:'href')
-        self.href = attributes[:'href']
-      else
-        self.href = nil
-      end
-
-      if attributes.key?(:'license_href')
-        self.license_href = attributes[:'license_href']
-      else
-        self.license_href = nil
-      end
-    end
-
-    # Show invalid properties with the reasons. Usually used together with valid?
-    # @return Array for valid properties with the reasons
-    def list_invalid_properties
-      warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
-      invalid_properties = Array.new
-      if @name.nil?
-        invalid_properties.push('invalid value for "name", name cannot be nil.')
-      end
-
-      if @license.nil?
-        invalid_properties.push('invalid value for "license", license cannot be nil.')
-      end
-
-      if @href.nil?
-        invalid_properties.push('invalid value for "href", href cannot be nil.')
-      end
-
-      if @license_href.nil?
-        invalid_properties.push('invalid value for "license_href", license_href cannot be nil.')
-      end
-
-      invalid_properties
-    end
-
-    # Check to see if the all the properties in the model are valid
-    # @return true if the model is valid
-    def valid?
-      warn '[DEPRECATED] the `valid?` method is obsolete'
-      return false if @name.nil?
-      return false if @license.nil?
-      return false if @href.nil?
-      return false if @license_href.nil?
-      true
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] name Value to be assigned
-    def name=(name)
-      if name.nil?
-        fail ArgumentError, 'name cannot be nil'
-      end
-
-      @name = name
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] license Value to be assigned
-    def license=(license)
-      if license.nil?
-        fail ArgumentError, 'license cannot be nil'
-      end
-
-      @license = license
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] href Value to be assigned
-    def href=(href)
-      if href.nil?
-        fail ArgumentError, 'href cannot be nil'
-      end
-
-      @href = href
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] license_href Value to be assigned
-    def license_href=(license_href)
-      if license_href.nil?
-        fail ArgumentError, 'license_href cannot be nil'
-      end
-
-      @license_href = license_href
-    end
-
-    # Checks equality by comparing each attribute.
-    # @param [Object] Object to be compared
-    def ==(o)
-      return true if self.equal?(o)
-      self.class == o.class &&
-          name == o.name &&
-          license == o.license &&
-          href == o.href &&
-          license_href == o.license_href
-    end
-
-    # @see the `==` method
-    # @param [Object] Object to be compared
-    def eql?(o)
-      self == o
-    end
-
-    # Calculates hash code according to all attributes.
-    # @return [Integer] Hash code
-    def hash
-      [name, license, href, license_href].hash
-    end
-
-    # Builds the object from hash
-    # @param [Hash] attributes Model attributes in the form of hash
-    # @return [Object] Returns the model itself
-    def self.build_from_hash(attributes)
-      return nil unless attributes.is_a?(Hash)
-      attributes = attributes.transform_keys(&:to_sym)
-      transformed_hash = {}
-      openapi_types.each_pair do |key, type|
-        if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
-          transformed_hash["#{key}"] = nil
-        elsif type =~ /\AArray<(.*)>/i
-          # check to ensure the input is an array given that the attribute
-          # is documented as an array but the input is not
-          if attributes[attribute_map[key]].is_a?(Array)
-            transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
-          end
-        elsif !attributes[attribute_map[key]].nil?
-          transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
-        end
-      end
-      new(transformed_hash)
-    end
-
-    # Deserializes the data based on type
-    # @param string type Data type
-    # @param string value Value to be deserialized
-    # @return [Object] Deserialized data
-    def self._deserialize(type, value)
-      case type.to_sym
-      when :Time
-        Time.parse(value)
-      when :Date
-        Date.parse(value)
-      when :String
-        value.to_s
-      when :Integer
-        value.to_i
-      when :Float
-        value.to_f
-      when :Boolean
-        if value.to_s =~ /\A(true|t|yes|y|1)\z/i
-          true
-        else
-          false
-        end
-      when :Object
-        # generic object (usually a Hash), return directly
-        value
-      when /\AArray<(?<inner_type>.+)>\z/
-        inner_type = Regexp.last_match[:inner_type]
-        value.map { |v| _deserialize(inner_type, v) }
-      when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
-        k_type = Regexp.last_match[:k_type]
-        v_type = Regexp.last_match[:v_type]
-        {}.tap do |hash|
-          value.each do |k, v|
-            hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
-          end
-        end
-      else # model
-        # models (e.g. Pet) or oneOf
-        klass = PharmaObservatory.const_get(type)
-        klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
-      end
-    end
-
-    # Returns the string representation of the object
-    # @return [String] String presentation of the object
-    def to_s
-      to_hash.to_s
-    end
-
-    # to_body is an alias to to_hash (backward compatibility)
-    # @return [Hash] Returns the object in the form of hash
-    def to_body
-      to_hash
-    end
-
-    # Returns the object in the form of hash
-    # @return [Hash] Returns the object in the form of hash
-    def to_hash
-      hash = {}
-      self.class.attribute_map.each_pair do |attr, param|
-        value = self.send(attr)
-        if value.nil?
-          is_nullable = self.class.openapi_nullable.include?(attr)
-          next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
-        end
-
-        hash[param] = _to_hash(value)
-      end
-      hash
-    end
-
-    # Outputs non-array value in the form of hash
-    # For object, use to_hash. Otherwise, just return the value
-    # @param [Object] value Any valid value
-    # @return [Hash] Returns the value in the form of hash
-    def _to_hash(value)
-      if value.is_a?(Array)
-        value.compact.map { |v| _to_hash(v) }
-      elsif value.is_a?(Hash)
-        {}.tap do |hash|
-          value.each { |k, v| hash[k] = _to_hash(v) }
-        end
-      elsif value.respond_to? :to_hash
-        value.to_hash
-      else
-        value
-      end
-    end
-
-  end
-
-end

data/lib/pharmaobservatory/models/biomarkers_population_allele_frequency200_response_rows_inner.rb

@@ -1,385 +0,0 @@
-=begin
-#Pharma Observatory Public REST API
-
-#Read-only REST API over the Pharma Observatory biomedical data platform. Reference: https://pharmaobservatory.com/api-reference
-
-The version of the OpenAPI document: 1.0.0
-
-Generated by: https://openapi-generator.tech
-Generator version: 7.13.0
-
-=end
-
-require 'date'
-require 'time'
-
-module PharmaObservatory
-  class BiomarkersPopulationAlleleFrequency200ResponseRowsInner
-    attr_accessor :dna_change
-
-    attr_accessor :coverage_status
-
-    attr_accessor :gnomad_release
-
-    attr_accessor :filter_status
-
-    attr_accessor :abstain_reason
-
-    attr_accessor :population_code
-
-    attr_accessor :population
-
-    attr_accessor :allele_count
-
-    attr_accessor :allele_number
-
-    attr_accessor :allele_frequency
-
-    attr_accessor :homozygote_count
-
-    # Attribute mapping from ruby-style variable name to JSON key.
-    def self.attribute_map
-      {
-        :'dna_change' => :'dna_change',
-        :'coverage_status' => :'coverage_status',
-        :'gnomad_release' => :'gnomad_release',
-        :'filter_status' => :'filter_status',
-        :'abstain_reason' => :'abstain_reason',
-        :'population_code' => :'population_code',
-        :'population' => :'population',
-        :'allele_count' => :'allele_count',
-        :'allele_number' => :'allele_number',
-        :'allele_frequency' => :'allele_frequency',
-        :'homozygote_count' => :'homozygote_count'
-      }
-    end
-
-    # Returns attribute mapping this model knows about
-    def self.acceptable_attribute_map
-      attribute_map
-    end
-
-    # Returns all the JSON keys this model knows about
-    def self.acceptable_attributes
-      acceptable_attribute_map.values
-    end
-
-    # Attribute type mapping.
-    def self.openapi_types
-      {
-        :'dna_change' => :'String',
-        :'coverage_status' => :'String',
-        :'gnomad_release' => :'String',
-        :'filter_status' => :'Object',
-        :'abstain_reason' => :'Object',
-        :'population_code' => :'Object',
-        :'population' => :'Object',
-        :'allele_count' => :'Object',
-        :'allele_number' => :'Object',
-        :'allele_frequency' => :'Object',
-        :'homozygote_count' => :'Object'
-      }
-    end
-
-    # List of attributes with nullable: true
-    def self.openapi_nullable
-      Set.new([
-        :'filter_status',
-        :'abstain_reason',
-        :'population_code',
-        :'population',
-        :'allele_count',
-        :'allele_number',
-        :'allele_frequency',
-        :'homozygote_count'
-      ])
-    end
-
-    # Initializes the object
-    # @param [Hash] attributes Model attributes in the form of hash
-    def initialize(attributes = {})
-      if (!attributes.is_a?(Hash))
-        fail ArgumentError, "The input argument (attributes) must be a hash in `PharmaObservatory::BiomarkersPopulationAlleleFrequency200ResponseRowsInner` initialize method"
-      end
-
-      # check to see if the attribute exists and convert string to symbol for hash key
-      acceptable_attribute_map = self.class.acceptable_attribute_map
-      attributes = attributes.each_with_object({}) { |(k, v), h|
-        if (!acceptable_attribute_map.key?(k.to_sym))
-          fail ArgumentError, "`#{k}` is not a valid attribute in `PharmaObservatory::BiomarkersPopulationAlleleFrequency200ResponseRowsInner`. Please check the name to make sure it's valid. List of attributes: " + acceptable_attribute_map.keys.inspect
-        end
-        h[k.to_sym] = v
-      }
-
-      if attributes.key?(:'dna_change')
-        self.dna_change = attributes[:'dna_change']
-      else
-        self.dna_change = nil
-      end
-
-      if attributes.key?(:'coverage_status')
-        self.coverage_status = attributes[:'coverage_status']
-      else
-        self.coverage_status = nil
-      end
-
-      if attributes.key?(:'gnomad_release')
-        self.gnomad_release = attributes[:'gnomad_release']
-      else
-        self.gnomad_release = nil
-      end
-
-      if attributes.key?(:'filter_status')
-        self.filter_status = attributes[:'filter_status']
-      else
-        self.filter_status = nil
-      end
-
-      if attributes.key?(:'abstain_reason')
-        self.abstain_reason = attributes[:'abstain_reason']
-      else
-        self.abstain_reason = nil
-      end
-
-      if attributes.key?(:'population_code')
-        self.population_code = attributes[:'population_code']
-      else
-        self.population_code = nil
-      end
-
-      if attributes.key?(:'population')
-        self.population = attributes[:'population']
-      else
-        self.population = nil
-      end
-
-      if attributes.key?(:'allele_count')
-        self.allele_count = attributes[:'allele_count']
-      else
-        self.allele_count = nil
-      end
-
-      if attributes.key?(:'allele_number')
-        self.allele_number = attributes[:'allele_number']
-      else
-        self.allele_number = nil
-      end
-
-      if attributes.key?(:'allele_frequency')
-        self.allele_frequency = attributes[:'allele_frequency']
-      else
-        self.allele_frequency = nil
-      end
-
-      if attributes.key?(:'homozygote_count')
-        self.homozygote_count = attributes[:'homozygote_count']
-      else
-        self.homozygote_count = nil
-      end
-    end
-
-    # Show invalid properties with the reasons. Usually used together with valid?
-    # @return Array for valid properties with the reasons
-    def list_invalid_properties
-      warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
-      invalid_properties = Array.new
-      if @dna_change.nil?
-        invalid_properties.push('invalid value for "dna_change", dna_change cannot be nil.')
-      end
-
-      if @coverage_status.nil?
-        invalid_properties.push('invalid value for "coverage_status", coverage_status cannot be nil.')
-      end
-
-      if @gnomad_release.nil?
-        invalid_properties.push('invalid value for "gnomad_release", gnomad_release cannot be nil.')
-      end
-
-      invalid_properties
-    end
-
-    # Check to see if the all the properties in the model are valid
-    # @return true if the model is valid
-    def valid?
-      warn '[DEPRECATED] the `valid?` method is obsolete'
-      return false if @dna_change.nil?
-      return false if @coverage_status.nil?
-      return false if @gnomad_release.nil?
-      true
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] dna_change Value to be assigned
-    def dna_change=(dna_change)
-      if dna_change.nil?
-        fail ArgumentError, 'dna_change cannot be nil'
-      end
-
-      @dna_change = dna_change
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] coverage_status Value to be assigned
-    def coverage_status=(coverage_status)
-      if coverage_status.nil?
-        fail ArgumentError, 'coverage_status cannot be nil'
-      end
-
-      @coverage_status = coverage_status
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] gnomad_release Value to be assigned
-    def gnomad_release=(gnomad_release)
-      if gnomad_release.nil?
-        fail ArgumentError, 'gnomad_release cannot be nil'
-      end
-
-      @gnomad_release = gnomad_release
-    end
-
-    # Checks equality by comparing each attribute.
-    # @param [Object] Object to be compared
-    def ==(o)
-      return true if self.equal?(o)
-      self.class == o.class &&
-          dna_change == o.dna_change &&
-          coverage_status == o.coverage_status &&
-          gnomad_release == o.gnomad_release &&
-          filter_status == o.filter_status &&
-          abstain_reason == o.abstain_reason &&
-          population_code == o.population_code &&
-          population == o.population &&
-          allele_count == o.allele_count &&
-          allele_number == o.allele_number &&
-          allele_frequency == o.allele_frequency &&
-          homozygote_count == o.homozygote_count
-    end
-
-    # @see the `==` method
-    # @param [Object] Object to be compared
-    def eql?(o)
-      self == o
-    end
-
-    # Calculates hash code according to all attributes.
-    # @return [Integer] Hash code
-    def hash
-      [dna_change, coverage_status, gnomad_release, filter_status, abstain_reason, population_code, population, allele_count, allele_number, allele_frequency, homozygote_count].hash
-    end
-
-    # Builds the object from hash
-    # @param [Hash] attributes Model attributes in the form of hash
-    # @return [Object] Returns the model itself
-    def self.build_from_hash(attributes)
-      return nil unless attributes.is_a?(Hash)
-      attributes = attributes.transform_keys(&:to_sym)
-      transformed_hash = {}
-      openapi_types.each_pair do |key, type|
-        if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
-          transformed_hash["#{key}"] = nil
-        elsif type =~ /\AArray<(.*)>/i
-          # check to ensure the input is an array given that the attribute
-          # is documented as an array but the input is not
-          if attributes[attribute_map[key]].is_a?(Array)
-            transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
-          end
-        elsif !attributes[attribute_map[key]].nil?
-          transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
-        end
-      end
-      new(transformed_hash)
-    end
-
-    # Deserializes the data based on type
-    # @param string type Data type
-    # @param string value Value to be deserialized
-    # @return [Object] Deserialized data
-    def self._deserialize(type, value)
-      case type.to_sym
-      when :Time
-        Time.parse(value)
-      when :Date
-        Date.parse(value)
-      when :String
-        value.to_s
-      when :Integer
-        value.to_i
-      when :Float
-        value.to_f
-      when :Boolean
-        if value.to_s =~ /\A(true|t|yes|y|1)\z/i
-          true
-        else
-          false
-        end
-      when :Object
-        # generic object (usually a Hash), return directly
-        value
-      when /\AArray<(?<inner_type>.+)>\z/
-        inner_type = Regexp.last_match[:inner_type]
-        value.map { |v| _deserialize(inner_type, v) }
-      when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
-        k_type = Regexp.last_match[:k_type]
-        v_type = Regexp.last_match[:v_type]
-        {}.tap do |hash|
-          value.each do |k, v|
-            hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
-          end
-        end
-      else # model
-        # models (e.g. Pet) or oneOf
-        klass = PharmaObservatory.const_get(type)
-        klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
-      end
-    end
-
-    # Returns the string representation of the object
-    # @return [String] String presentation of the object
-    def to_s
-      to_hash.to_s
-    end
-
-    # to_body is an alias to to_hash (backward compatibility)
-    # @return [Hash] Returns the object in the form of hash
-    def to_body
-      to_hash
-    end
-
-    # Returns the object in the form of hash
-    # @return [Hash] Returns the object in the form of hash
-    def to_hash
-      hash = {}
-      self.class.attribute_map.each_pair do |attr, param|
-        value = self.send(attr)
-        if value.nil?
-          is_nullable = self.class.openapi_nullable.include?(attr)
-          next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
-        end
-
-        hash[param] = _to_hash(value)
-      end
-      hash
-    end
-
-    # Outputs non-array value in the form of hash
-    # For object, use to_hash. Otherwise, just return the value
-    # @param [Object] value Any valid value
-    # @return [Hash] Returns the value in the form of hash
-    def _to_hash(value)
-      if value.is_a?(Array)
-        value.compact.map { |v| _to_hash(v) }
-      elsif value.is_a?(Hash)
-        {}.tap do |hash|
-          value.each { |k, v| hash[k] = _to_hash(v) }
-        end
-      elsif value.respond_to? :to_hash
-        value.to_hash
-      else
-        value
-      end
-    end
-
-  end
-
-end