pharmaobservatory 0.1.2 → 0.1.4

data/lib/pharmaobservatory/models/biomarkers_sample_screening200_response_context.rb

@@ -1,333 +0,0 @@
-=begin
-#Pharma Observatory Public REST API
-
-#Read-only REST API over the Pharma Observatory biomedical data platform. Reference: https://pharmaobservatory.com/api-reference
-
-The version of the OpenAPI document: 1.0.0
-
-Generated by: https://openapi-generator.tech
-Generator version: 7.13.0
-
-=end
-
-require 'date'
-require 'time'
-
-module PharmaObservatory
-  class BiomarkersSampleScreening200ResponseContext
-    attr_accessor :coverage_counts
-
-    attr_accessor :requested_positive_samples
-
-    attr_accessor :zero_variants
-
-    attr_accessor :multiple_variants
-
-    attr_accessor :source_error_variants
-
-    # Attribute mapping from ruby-style variable name to JSON key.
-    def self.attribute_map
-      {
-        :'coverage_counts' => :'coverage_counts',
-        :'requested_positive_samples' => :'requested_positive_samples',
-        :'zero_variants' => :'zero_variants',
-        :'multiple_variants' => :'multiple_variants',
-        :'source_error_variants' => :'source_error_variants'
-      }
-    end
-
-    # Returns attribute mapping this model knows about
-    def self.acceptable_attribute_map
-      attribute_map
-    end
-
-    # Returns all the JSON keys this model knows about
-    def self.acceptable_attributes
-      acceptable_attribute_map.values
-    end
-
-    # Attribute type mapping.
-    def self.openapi_types
-      {
-        :'coverage_counts' => :'BiomarkersSampleScreening200ResponseContextCoverageCounts',
-        :'requested_positive_samples' => :'Integer',
-        :'zero_variants' => :'Array<Object>',
-        :'multiple_variants' => :'Array<String>',
-        :'source_error_variants' => :'Array<Object>'
-      }
-    end
-
-    # List of attributes with nullable: true
-    def self.openapi_nullable
-      Set.new([
-        :'requested_positive_samples',
-      ])
-    end
-
-    # Initializes the object
-    # @param [Hash] attributes Model attributes in the form of hash
-    def initialize(attributes = {})
-      if (!attributes.is_a?(Hash))
-        fail ArgumentError, "The input argument (attributes) must be a hash in `PharmaObservatory::BiomarkersSampleScreening200ResponseContext` initialize method"
-      end
-
-      # check to see if the attribute exists and convert string to symbol for hash key
-      acceptable_attribute_map = self.class.acceptable_attribute_map
-      attributes = attributes.each_with_object({}) { |(k, v), h|
-        if (!acceptable_attribute_map.key?(k.to_sym))
-          fail ArgumentError, "`#{k}` is not a valid attribute in `PharmaObservatory::BiomarkersSampleScreening200ResponseContext`. Please check the name to make sure it's valid. List of attributes: " + acceptable_attribute_map.keys.inspect
-        end
-        h[k.to_sym] = v
-      }
-
-      if attributes.key?(:'coverage_counts')
-        self.coverage_counts = attributes[:'coverage_counts']
-      else
-        self.coverage_counts = nil
-      end
-
-      if attributes.key?(:'requested_positive_samples')
-        self.requested_positive_samples = attributes[:'requested_positive_samples']
-      else
-        self.requested_positive_samples = nil
-      end
-
-      if attributes.key?(:'zero_variants')
-        if (value = attributes[:'zero_variants']).is_a?(Array)
-          self.zero_variants = value
-        end
-      else
-        self.zero_variants = nil
-      end
-
-      if attributes.key?(:'multiple_variants')
-        if (value = attributes[:'multiple_variants']).is_a?(Array)
-          self.multiple_variants = value
-        end
-      else
-        self.multiple_variants = nil
-      end
-
-      if attributes.key?(:'source_error_variants')
-        if (value = attributes[:'source_error_variants']).is_a?(Array)
-          self.source_error_variants = value
-        end
-      else
-        self.source_error_variants = nil
-      end
-    end
-
-    # Show invalid properties with the reasons. Usually used together with valid?
-    # @return Array for valid properties with the reasons
-    def list_invalid_properties
-      warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
-      invalid_properties = Array.new
-      if @coverage_counts.nil?
-        invalid_properties.push('invalid value for "coverage_counts", coverage_counts cannot be nil.')
-      end
-
-      if @zero_variants.nil?
-        invalid_properties.push('invalid value for "zero_variants", zero_variants cannot be nil.')
-      end
-
-      if @multiple_variants.nil?
-        invalid_properties.push('invalid value for "multiple_variants", multiple_variants cannot be nil.')
-      end
-
-      if @source_error_variants.nil?
-        invalid_properties.push('invalid value for "source_error_variants", source_error_variants cannot be nil.')
-      end
-
-      invalid_properties
-    end
-
-    # Check to see if the all the properties in the model are valid
-    # @return true if the model is valid
-    def valid?
-      warn '[DEPRECATED] the `valid?` method is obsolete'
-      return false if @coverage_counts.nil?
-      return false if @zero_variants.nil?
-      return false if @multiple_variants.nil?
-      return false if @source_error_variants.nil?
-      true
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] coverage_counts Value to be assigned
-    def coverage_counts=(coverage_counts)
-      if coverage_counts.nil?
-        fail ArgumentError, 'coverage_counts cannot be nil'
-      end
-
-      @coverage_counts = coverage_counts
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] zero_variants Value to be assigned
-    def zero_variants=(zero_variants)
-      if zero_variants.nil?
-        fail ArgumentError, 'zero_variants cannot be nil'
-      end
-
-      @zero_variants = zero_variants
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] multiple_variants Value to be assigned
-    def multiple_variants=(multiple_variants)
-      if multiple_variants.nil?
-        fail ArgumentError, 'multiple_variants cannot be nil'
-      end
-
-      @multiple_variants = multiple_variants
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] source_error_variants Value to be assigned
-    def source_error_variants=(source_error_variants)
-      if source_error_variants.nil?
-        fail ArgumentError, 'source_error_variants cannot be nil'
-      end
-
-      @source_error_variants = source_error_variants
-    end
-
-    # Checks equality by comparing each attribute.
-    # @param [Object] Object to be compared
-    def ==(o)
-      return true if self.equal?(o)
-      self.class == o.class &&
-          coverage_counts == o.coverage_counts &&
-          requested_positive_samples == o.requested_positive_samples &&
-          zero_variants == o.zero_variants &&
-          multiple_variants == o.multiple_variants &&
-          source_error_variants == o.source_error_variants
-    end
-
-    # @see the `==` method
-    # @param [Object] Object to be compared
-    def eql?(o)
-      self == o
-    end
-
-    # Calculates hash code according to all attributes.
-    # @return [Integer] Hash code
-    def hash
-      [coverage_counts, requested_positive_samples, zero_variants, multiple_variants, source_error_variants].hash
-    end
-
-    # Builds the object from hash
-    # @param [Hash] attributes Model attributes in the form of hash
-    # @return [Object] Returns the model itself
-    def self.build_from_hash(attributes)
-      return nil unless attributes.is_a?(Hash)
-      attributes = attributes.transform_keys(&:to_sym)
-      transformed_hash = {}
-      openapi_types.each_pair do |key, type|
-        if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
-          transformed_hash["#{key}"] = nil
-        elsif type =~ /\AArray<(.*)>/i
-          # check to ensure the input is an array given that the attribute
-          # is documented as an array but the input is not
-          if attributes[attribute_map[key]].is_a?(Array)
-            transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
-          end
-        elsif !attributes[attribute_map[key]].nil?
-          transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
-        end
-      end
-      new(transformed_hash)
-    end
-
-    # Deserializes the data based on type
-    # @param string type Data type
-    # @param string value Value to be deserialized
-    # @return [Object] Deserialized data
-    def self._deserialize(type, value)
-      case type.to_sym
-      when :Time
-        Time.parse(value)
-      when :Date
-        Date.parse(value)
-      when :String
-        value.to_s
-      when :Integer
-        value.to_i
-      when :Float
-        value.to_f
-      when :Boolean
-        if value.to_s =~ /\A(true|t|yes|y|1)\z/i
-          true
-        else
-          false
-        end
-      when :Object
-        # generic object (usually a Hash), return directly
-        value
-      when /\AArray<(?<inner_type>.+)>\z/
-        inner_type = Regexp.last_match[:inner_type]
-        value.map { |v| _deserialize(inner_type, v) }
-      when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
-        k_type = Regexp.last_match[:k_type]
-        v_type = Regexp.last_match[:v_type]
-        {}.tap do |hash|
-          value.each do |k, v|
-            hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
-          end
-        end
-      else # model
-        # models (e.g. Pet) or oneOf
-        klass = PharmaObservatory.const_get(type)
-        klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
-      end
-    end
-
-    # Returns the string representation of the object
-    # @return [String] String presentation of the object
-    def to_s
-      to_hash.to_s
-    end
-
-    # to_body is an alias to to_hash (backward compatibility)
-    # @return [Hash] Returns the object in the form of hash
-    def to_body
-      to_hash
-    end
-
-    # Returns the object in the form of hash
-    # @return [Hash] Returns the object in the form of hash
-    def to_hash
-      hash = {}
-      self.class.attribute_map.each_pair do |attr, param|
-        value = self.send(attr)
-        if value.nil?
-          is_nullable = self.class.openapi_nullable.include?(attr)
-          next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
-        end
-
-        hash[param] = _to_hash(value)
-      end
-      hash
-    end
-
-    # Outputs non-array value in the form of hash
-    # For object, use to_hash. Otherwise, just return the value
-    # @param [Object] value Any valid value
-    # @return [Hash] Returns the value in the form of hash
-    def _to_hash(value)
-      if value.is_a?(Array)
-        value.compact.map { |v| _to_hash(v) }
-      elsif value.is_a?(Hash)
-        {}.tap do |hash|
-          value.each { |k, v| hash[k] = _to_hash(v) }
-        end
-      elsif value.respond_to? :to_hash
-        value.to_hash
-      else
-        value
-      end
-    end
-
-  end
-
-end

data/lib/pharmaobservatory/models/biomarkers_sample_screening200_response_context_coverage_counts.rb

@@ -1,263 +0,0 @@
-=begin
-#Pharma Observatory Public REST API
-
-#Read-only REST API over the Pharma Observatory biomedical data platform. Reference: https://pharmaobservatory.com/api-reference
-
-The version of the OpenAPI document: 1.0.0
-
-Generated by: https://openapi-generator.tech
-Generator version: 7.13.0
-
-=end
-
-require 'date'
-require 'time'
-
-module PharmaObservatory
-  class BiomarkersSampleScreening200ResponseContextCoverageCounts
-    attr_accessor :resolved_single_ssm
-
-    attr_accessor :multiple_exact_ssms
-
-    # Attribute mapping from ruby-style variable name to JSON key.
-    def self.attribute_map
-      {
-        :'resolved_single_ssm' => :'resolved_single_ssm',
-        :'multiple_exact_ssms' => :'multiple_exact_ssms'
-      }
-    end
-
-    # Returns attribute mapping this model knows about
-    def self.acceptable_attribute_map
-      attribute_map
-    end
-
-    # Returns all the JSON keys this model knows about
-    def self.acceptable_attributes
-      acceptable_attribute_map.values
-    end
-
-    # Attribute type mapping.
-    def self.openapi_types
-      {
-        :'resolved_single_ssm' => :'Integer',
-        :'multiple_exact_ssms' => :'Integer'
-      }
-    end
-
-    # List of attributes with nullable: true
-    def self.openapi_nullable
-      Set.new([
-      ])
-    end
-
-    # Initializes the object
-    # @param [Hash] attributes Model attributes in the form of hash
-    def initialize(attributes = {})
-      if (!attributes.is_a?(Hash))
-        fail ArgumentError, "The input argument (attributes) must be a hash in `PharmaObservatory::BiomarkersSampleScreening200ResponseContextCoverageCounts` initialize method"
-      end
-
-      # check to see if the attribute exists and convert string to symbol for hash key
-      acceptable_attribute_map = self.class.acceptable_attribute_map
-      attributes = attributes.each_with_object({}) { |(k, v), h|
-        if (!acceptable_attribute_map.key?(k.to_sym))
-          fail ArgumentError, "`#{k}` is not a valid attribute in `PharmaObservatory::BiomarkersSampleScreening200ResponseContextCoverageCounts`. Please check the name to make sure it's valid. List of attributes: " + acceptable_attribute_map.keys.inspect
-        end
-        h[k.to_sym] = v
-      }
-
-      if attributes.key?(:'resolved_single_ssm')
-        self.resolved_single_ssm = attributes[:'resolved_single_ssm']
-      else
-        self.resolved_single_ssm = nil
-      end
-
-      if attributes.key?(:'multiple_exact_ssms')
-        self.multiple_exact_ssms = attributes[:'multiple_exact_ssms']
-      else
-        self.multiple_exact_ssms = nil
-      end
-    end
-
-    # Show invalid properties with the reasons. Usually used together with valid?
-    # @return Array for valid properties with the reasons
-    def list_invalid_properties
-      warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
-      invalid_properties = Array.new
-      if @resolved_single_ssm.nil?
-        invalid_properties.push('invalid value for "resolved_single_ssm", resolved_single_ssm cannot be nil.')
-      end
-
-      if @multiple_exact_ssms.nil?
-        invalid_properties.push('invalid value for "multiple_exact_ssms", multiple_exact_ssms cannot be nil.')
-      end
-
-      invalid_properties
-    end
-
-    # Check to see if the all the properties in the model are valid
-    # @return true if the model is valid
-    def valid?
-      warn '[DEPRECATED] the `valid?` method is obsolete'
-      return false if @resolved_single_ssm.nil?
-      return false if @multiple_exact_ssms.nil?
-      true
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] resolved_single_ssm Value to be assigned
-    def resolved_single_ssm=(resolved_single_ssm)
-      if resolved_single_ssm.nil?
-        fail ArgumentError, 'resolved_single_ssm cannot be nil'
-      end
-
-      @resolved_single_ssm = resolved_single_ssm
-    end
-
-    # Custom attribute writer method with validation
-    # @param [Object] multiple_exact_ssms Value to be assigned
-    def multiple_exact_ssms=(multiple_exact_ssms)
-      if multiple_exact_ssms.nil?
-        fail ArgumentError, 'multiple_exact_ssms cannot be nil'
-      end
-
-      @multiple_exact_ssms = multiple_exact_ssms
-    end
-
-    # Checks equality by comparing each attribute.
-    # @param [Object] Object to be compared
-    def ==(o)
-      return true if self.equal?(o)
-      self.class == o.class &&
-          resolved_single_ssm == o.resolved_single_ssm &&
-          multiple_exact_ssms == o.multiple_exact_ssms
-    end
-
-    # @see the `==` method
-    # @param [Object] Object to be compared
-    def eql?(o)
-      self == o
-    end
-
-    # Calculates hash code according to all attributes.
-    # @return [Integer] Hash code
-    def hash
-      [resolved_single_ssm, multiple_exact_ssms].hash
-    end
-
-    # Builds the object from hash
-    # @param [Hash] attributes Model attributes in the form of hash
-    # @return [Object] Returns the model itself
-    def self.build_from_hash(attributes)
-      return nil unless attributes.is_a?(Hash)
-      attributes = attributes.transform_keys(&:to_sym)
-      transformed_hash = {}
-      openapi_types.each_pair do |key, type|
-        if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
-          transformed_hash["#{key}"] = nil
-        elsif type =~ /\AArray<(.*)>/i
-          # check to ensure the input is an array given that the attribute
-          # is documented as an array but the input is not
-          if attributes[attribute_map[key]].is_a?(Array)
-            transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
-          end
-        elsif !attributes[attribute_map[key]].nil?
-          transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
-        end
-      end
-      new(transformed_hash)
-    end
-
-    # Deserializes the data based on type
-    # @param string type Data type
-    # @param string value Value to be deserialized
-    # @return [Object] Deserialized data
-    def self._deserialize(type, value)
-      case type.to_sym
-      when :Time
-        Time.parse(value)
-      when :Date
-        Date.parse(value)
-      when :String
-        value.to_s
-      when :Integer
-        value.to_i
-      when :Float
-        value.to_f
-      when :Boolean
-        if value.to_s =~ /\A(true|t|yes|y|1)\z/i
-          true
-        else
-          false
-        end
-      when :Object
-        # generic object (usually a Hash), return directly
-        value
-      when /\AArray<(?<inner_type>.+)>\z/
-        inner_type = Regexp.last_match[:inner_type]
-        value.map { |v| _deserialize(inner_type, v) }
-      when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
-        k_type = Regexp.last_match[:k_type]
-        v_type = Regexp.last_match[:v_type]
-        {}.tap do |hash|
-          value.each do |k, v|
-            hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
-          end
-        end
-      else # model
-        # models (e.g. Pet) or oneOf
-        klass = PharmaObservatory.const_get(type)
-        klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
-      end
-    end
-
-    # Returns the string representation of the object
-    # @return [String] String presentation of the object
-    def to_s
-      to_hash.to_s
-    end
-
-    # to_body is an alias to to_hash (backward compatibility)
-    # @return [Hash] Returns the object in the form of hash
-    def to_body
-      to_hash
-    end
-
-    # Returns the object in the form of hash
-    # @return [Hash] Returns the object in the form of hash
-    def to_hash
-      hash = {}
-      self.class.attribute_map.each_pair do |attr, param|
-        value = self.send(attr)
-        if value.nil?
-          is_nullable = self.class.openapi_nullable.include?(attr)
-          next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
-        end
-
-        hash[param] = _to_hash(value)
-      end
-      hash
-    end
-
-    # Outputs non-array value in the form of hash
-    # For object, use to_hash. Otherwise, just return the value
-    # @param [Object] value Any valid value
-    # @return [Hash] Returns the value in the form of hash
-    def _to_hash(value)
-      if value.is_a?(Array)
-        value.compact.map { |v| _to_hash(v) }
-      elsif value.is_a?(Hash)
-        {}.tap do |hash|
-          value.each { |k, v| hash[k] = _to_hash(v) }
-        end
-      elsif value.respond_to? :to_hash
-        value.to_hash
-      else
-        value
-      end
-    end
-
-  end
-
-end