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- data/ext/bamtools/src/utils/CMakeFiles/BamTools-utils.dir/flags.make +8 -0
- data/ext/bamtools/src/utils/CMakeFiles/BamTools-utils.dir/link.txt +1 -0
- data/ext/bamtools/src/utils/CMakeFiles/BamTools-utils.dir/progress.make +5 -0
- data/ext/bamtools/src/utils/CMakeFiles/CMakeDirectoryInformation.cmake +23 -0
- data/ext/bamtools/src/utils/CMakeFiles/progress.marks +1 -0
- data/ext/bamtools/src/utils/CMakeLists.txt +30 -0
- data/ext/bamtools/src/utils/Makefile +290 -0
- data/ext/bamtools/src/utils/bamtools_fasta.cpp +632 -0
- data/ext/bamtools/src/utils/bamtools_fasta.h +47 -0
- data/ext/bamtools/src/utils/bamtools_filter_engine.h +552 -0
- data/ext/bamtools/src/utils/bamtools_filter_properties.h +195 -0
- data/ext/bamtools/src/utils/bamtools_filter_ruleparser.h +319 -0
- data/ext/bamtools/src/utils/bamtools_options.cpp +287 -0
- data/ext/bamtools/src/utils/bamtools_options.h +213 -0
- data/ext/bamtools/src/utils/bamtools_pileup_engine.cpp +327 -0
- data/ext/bamtools/src/utils/bamtools_pileup_engine.h +94 -0
- data/ext/bamtools/src/utils/bamtools_utilities.cpp +333 -0
- data/ext/bamtools/src/utils/bamtools_utilities.h +67 -0
- data/ext/bamtools/src/utils/bamtools_variant.h +128 -0
- data/ext/bamtools/src/utils/cmake_install.cmake +29 -0
- data/ext/bamtools/src/utils/utils_global.h +21 -0
- data/lib/ngs_server/version.rb +3 -0
- data/lib/ngs_server.rb +3 -0
- data/ngs_server.gemspec +23 -0
- metadata +339 -0
@@ -0,0 +1,819 @@
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// Copyright 2007-2010 Baptiste Lepilleur
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// Distributed under MIT license, or public domain if desired and
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// recognized in your jurisdiction.
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// See file LICENSE for detail or copy at http://jsoncpp.sourceforge.net/LICENSE
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#include "json_writer.h"
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#include "json_tool.h"
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#include <utility>
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#include <assert.h>
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#include <stdio.h>
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#include <string.h>
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#include <iostream>
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#include <sstream>
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#include <iomanip>
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#if _MSC_VER >= 1400 // VC++ 8.0
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#pragma warning( disable : 4996 ) // disable warning about strdup being deprecated.
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#endif
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namespace Json {
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static bool containsControlCharacter( const char* str )
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{
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while ( *str )
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{
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if ( isControlCharacter( *(str++) ) )
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return true;
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}
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return false;
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}
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std::string valueToString( Int value )
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{
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UIntToStringBuffer buffer;
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char *current = buffer + sizeof(buffer);
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bool isNegative = value < 0;
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if ( isNegative )
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value = -value;
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uintToString( UInt(value), current );
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if ( isNegative )
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*--current = '-';
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assert( current >= buffer );
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return current;
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}
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std::string valueToString( UInt value )
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{
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UIntToStringBuffer buffer;
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char *current = buffer + sizeof(buffer);
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uintToString( value, current );
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assert( current >= buffer );
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return current;
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}
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std::string valueToString( double value )
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{
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char buffer[32];
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#if defined(_MSC_VER) && defined(__STDC_SECURE_LIB__) // Use secure version with visual studio 2005 to avoid warning.
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sprintf_s(buffer, sizeof(buffer), "%#.16g", value);
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#else
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sprintf(buffer, "%#.16g", value);
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#endif
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char* ch = buffer + strlen(buffer) - 1;
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if (*ch != '0') return buffer; // nothing to truncate, so save time
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while(ch > buffer && *ch == '0'){
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--ch;
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}
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char* last_nonzero = ch;
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while(ch >= buffer){
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switch(*ch){
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case '0':
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case '1':
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case '2':
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case '3':
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case '4':
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case '5':
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case '6':
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case '7':
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case '8':
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case '9':
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--ch;
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continue;
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case '.':
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// Truncate zeroes to save bytes in output, but keep one.
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*(last_nonzero+2) = '\0';
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return buffer;
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default:
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return buffer;
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}
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}
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return buffer;
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}
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std::string valueToString( bool value )
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{
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return value ? "true" : "false";
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}
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std::string valueToQuotedString( const char *value )
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{
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// Not sure how to handle unicode...
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if (strpbrk(value, "\"\\\b\f\n\r\t") == NULL && !containsControlCharacter( value ))
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return std::string("\"") + value + "\"";
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// We have to walk value and escape any special characters.
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// Appending to std::string is not efficient, but this should be rare.
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// (Note: forward slashes are *not* rare, but I am not escaping them.)
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std::string::size_type maxsize = strlen(value)*2 + 3; // allescaped+quotes+NULL
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std::string result;
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result.reserve(maxsize); // to avoid lots of mallocs
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result += "\"";
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for (const char* c=value; *c != 0; ++c)
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{
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switch(*c)
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{
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case '\"':
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result += "\\\"";
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break;
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case '\\':
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result += "\\\\";
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break;
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case '\b':
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result += "\\b";
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break;
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case '\f':
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result += "\\f";
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break;
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case '\n':
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result += "\\n";
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break;
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case '\r':
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result += "\\r";
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break;
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case '\t':
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result += "\\t";
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break;
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//case '/':
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// Even though \/ is considered a legal escape in JSON, a bare
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// slash is also legal, so I see no reason to escape it.
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// (I hope I am not misunderstanding something.
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// blep notes: actually escaping \/ may be useful in javascript to avoid </
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// sequence.
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// Should add a flag to allow this compatibility mode and prevent this
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// sequence from occurring.
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default:
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if ( isControlCharacter( *c ) )
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{
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std::ostringstream oss;
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oss << "\\u" << std::hex << std::uppercase << std::setfill('0') << std::setw(4) << static_cast<int>(*c);
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result += oss.str();
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}
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else
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{
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result += *c;
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}
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break;
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}
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}
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result += "\"";
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return result;
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}
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// Class Writer
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// //////////////////////////////////////////////////////////////////
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Writer::~Writer()
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{
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}
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// Class FastWriter
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// //////////////////////////////////////////////////////////////////
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FastWriter::FastWriter()
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: yamlCompatiblityEnabled_( false )
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{
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}
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void
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FastWriter::enableYAMLCompatibility()
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{
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yamlCompatiblityEnabled_ = true;
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}
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std::string
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FastWriter::write( const Value &root )
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{
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document_ = "";
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writeValue( root );
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document_ += "\n";
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return document_;
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}
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void
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FastWriter::writeValue( const Value &value )
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{
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switch ( value.type() )
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{
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case nullValue:
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document_ += "null";
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break;
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case intValue:
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document_ += valueToString( value.asInt() );
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break;
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case uintValue:
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document_ += valueToString( value.asUInt() );
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break;
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case realValue:
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document_ += valueToString( value.asDouble() );
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break;
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case stringValue:
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document_ += valueToQuotedString( value.asCString() );
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break;
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case booleanValue:
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document_ += valueToString( value.asBool() );
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break;
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case arrayValue:
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{
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document_ += "[";
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int size = value.size();
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for ( int index =0; index < size; ++index )
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{
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if ( index > 0 )
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document_ += ",";
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writeValue( value[index] );
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}
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document_ += "]";
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}
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break;
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case objectValue:
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{
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Value::Members members( value.getMemberNames() );
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document_ += "{";
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for ( Value::Members::iterator it = members.begin();
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it != members.end();
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++it )
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{
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const std::string &name = *it;
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if ( it != members.begin() )
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document_ += ",";
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document_ += valueToQuotedString( name.c_str() );
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document_ += yamlCompatiblityEnabled_ ? ": "
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: ":";
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writeValue( value[name] );
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}
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document_ += "}";
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}
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break;
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}
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}
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// Class StyledWriter
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// //////////////////////////////////////////////////////////////////
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StyledWriter::StyledWriter()
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: rightMargin_( 74 )
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, indentSize_( 3 )
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{
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}
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std::string
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StyledWriter::write( const Value &root )
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{
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document_ = "";
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addChildValues_ = false;
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indentString_ = "";
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writeCommentBeforeValue( root );
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writeValue( root );
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writeCommentAfterValueOnSameLine( root );
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document_ += "\n";
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return document_;
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}
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void
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StyledWriter::writeValue( const Value &value )
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{
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switch ( value.type() )
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{
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case nullValue:
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pushValue( "null" );
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break;
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case intValue:
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pushValue( valueToString( value.asInt() ) );
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break;
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case uintValue:
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pushValue( valueToString( value.asUInt() ) );
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break;
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case realValue:
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pushValue( valueToString( value.asDouble() ) );
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break;
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case stringValue:
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pushValue( valueToQuotedString( value.asCString() ) );
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break;
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case booleanValue:
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pushValue( valueToString( value.asBool() ) );
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break;
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case arrayValue:
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writeArrayValue( value);
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break;
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case objectValue:
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{
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Value::Members members( value.getMemberNames() );
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if ( members.empty() )
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pushValue( "{}" );
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else
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{
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writeWithIndent( "{" );
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indent();
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Value::Members::iterator it = members.begin();
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while ( true )
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{
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const std::string &name = *it;
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const Value &childValue = value[name];
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writeCommentBeforeValue( childValue );
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writeWithIndent( valueToQuotedString( name.c_str() ) );
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document_ += " : ";
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writeValue( childValue );
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if ( ++it == members.end() )
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{
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writeCommentAfterValueOnSameLine( childValue );
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break;
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}
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document_ += ",";
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writeCommentAfterValueOnSameLine( childValue );
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}
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unindent();
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writeWithIndent( "}" );
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}
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}
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break;
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}
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}
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void
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StyledWriter::writeArrayValue( const Value &value )
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{
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unsigned size = value.size();
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if ( size == 0 )
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pushValue( "[]" );
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else
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{
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bool isArrayMultiLine = isMultineArray( value );
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if ( isArrayMultiLine )
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{
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writeWithIndent( "[" );
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indent();
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bool hasChildValue = !childValues_.empty();
|
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unsigned index =0;
|
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while ( true )
|
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{
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const Value &childValue = value[index];
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writeCommentBeforeValue( childValue );
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if ( hasChildValue )
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writeWithIndent( childValues_[index] );
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else
|
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{
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writeIndent();
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writeValue( childValue );
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}
|
367
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if ( ++index == size )
|
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{
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writeCommentAfterValueOnSameLine( childValue );
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break;
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}
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document_ += ",";
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writeCommentAfterValueOnSameLine( childValue );
|
374
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}
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375
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unindent();
|
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writeWithIndent( "]" );
|
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+
}
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378
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else // output on a single line
|
379
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{
|
380
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assert( childValues_.size() == size );
|
381
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document_ += "[ ";
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382
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for ( unsigned index =0; index < size; ++index )
|
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{
|
384
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+
if ( index > 0 )
|
385
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document_ += ", ";
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document_ += childValues_[index];
|
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}
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document_ += " ]";
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}
|
390
|
+
}
|
391
|
+
}
|
392
|
+
|
393
|
+
|
394
|
+
bool
|
395
|
+
StyledWriter::isMultineArray( const Value &value )
|
396
|
+
{
|
397
|
+
int size = value.size();
|
398
|
+
bool isMultiLine = size*3 >= rightMargin_ ;
|
399
|
+
childValues_.clear();
|
400
|
+
for ( int index =0; index < size && !isMultiLine; ++index )
|
401
|
+
{
|
402
|
+
const Value &childValue = value[index];
|
403
|
+
isMultiLine = isMultiLine ||
|
404
|
+
( (childValue.isArray() || childValue.isObject()) &&
|
405
|
+
childValue.size() > 0 );
|
406
|
+
}
|
407
|
+
if ( !isMultiLine ) // check if line length > max line length
|
408
|
+
{
|
409
|
+
childValues_.reserve( size );
|
410
|
+
addChildValues_ = true;
|
411
|
+
int lineLength = 4 + (size-1)*2; // '[ ' + ', '*n + ' ]'
|
412
|
+
for ( int index =0; index < size && !isMultiLine; ++index )
|
413
|
+
{
|
414
|
+
writeValue( value[index] );
|
415
|
+
lineLength += int( childValues_[index].length() );
|
416
|
+
isMultiLine = isMultiLine && hasCommentForValue( value[index] );
|
417
|
+
}
|
418
|
+
addChildValues_ = false;
|
419
|
+
isMultiLine = isMultiLine || lineLength >= rightMargin_;
|
420
|
+
}
|
421
|
+
return isMultiLine;
|
422
|
+
}
|
423
|
+
|
424
|
+
|
425
|
+
void
|
426
|
+
StyledWriter::pushValue( const std::string &value )
|
427
|
+
{
|
428
|
+
if ( addChildValues_ )
|
429
|
+
childValues_.push_back( value );
|
430
|
+
else
|
431
|
+
document_ += value;
|
432
|
+
}
|
433
|
+
|
434
|
+
|
435
|
+
void
|
436
|
+
StyledWriter::writeIndent()
|
437
|
+
{
|
438
|
+
if ( !document_.empty() )
|
439
|
+
{
|
440
|
+
char last = document_[document_.length()-1];
|
441
|
+
if ( last == ' ' ) // already indented
|
442
|
+
return;
|
443
|
+
if ( last != '\n' ) // Comments may add new-line
|
444
|
+
document_ += '\n';
|
445
|
+
}
|
446
|
+
document_ += indentString_;
|
447
|
+
}
|
448
|
+
|
449
|
+
|
450
|
+
void
|
451
|
+
StyledWriter::writeWithIndent( const std::string &value )
|
452
|
+
{
|
453
|
+
writeIndent();
|
454
|
+
document_ += value;
|
455
|
+
}
|
456
|
+
|
457
|
+
|
458
|
+
void
|
459
|
+
StyledWriter::indent()
|
460
|
+
{
|
461
|
+
indentString_ += std::string( indentSize_, ' ' );
|
462
|
+
}
|
463
|
+
|
464
|
+
|
465
|
+
void
|
466
|
+
StyledWriter::unindent()
|
467
|
+
{
|
468
|
+
assert( int(indentString_.size()) >= indentSize_ );
|
469
|
+
indentString_.resize( indentString_.size() - indentSize_ );
|
470
|
+
}
|
471
|
+
|
472
|
+
|
473
|
+
void
|
474
|
+
StyledWriter::writeCommentBeforeValue( const Value &root )
|
475
|
+
{
|
476
|
+
if ( !root.hasComment( commentBefore ) )
|
477
|
+
return;
|
478
|
+
document_ += normalizeEOL( root.getComment( commentBefore ) );
|
479
|
+
document_ += "\n";
|
480
|
+
}
|
481
|
+
|
482
|
+
|
483
|
+
void
|
484
|
+
StyledWriter::writeCommentAfterValueOnSameLine( const Value &root )
|
485
|
+
{
|
486
|
+
if ( root.hasComment( commentAfterOnSameLine ) )
|
487
|
+
document_ += " " + normalizeEOL( root.getComment( commentAfterOnSameLine ) );
|
488
|
+
|
489
|
+
if ( root.hasComment( commentAfter ) )
|
490
|
+
{
|
491
|
+
document_ += "\n";
|
492
|
+
document_ += normalizeEOL( root.getComment( commentAfter ) );
|
493
|
+
document_ += "\n";
|
494
|
+
}
|
495
|
+
}
|
496
|
+
|
497
|
+
|
498
|
+
bool
|
499
|
+
StyledWriter::hasCommentForValue( const Value &value )
|
500
|
+
{
|
501
|
+
return value.hasComment( commentBefore )
|
502
|
+
|| value.hasComment( commentAfterOnSameLine )
|
503
|
+
|| value.hasComment( commentAfter );
|
504
|
+
}
|
505
|
+
|
506
|
+
|
507
|
+
std::string
|
508
|
+
StyledWriter::normalizeEOL( const std::string &text )
|
509
|
+
{
|
510
|
+
std::string normalized;
|
511
|
+
normalized.reserve( text.length() );
|
512
|
+
const char *begin = text.c_str();
|
513
|
+
const char *end = begin + text.length();
|
514
|
+
const char *current = begin;
|
515
|
+
while ( current != end )
|
516
|
+
{
|
517
|
+
char c = *current++;
|
518
|
+
if ( c == '\r' ) // mac or dos EOL
|
519
|
+
{
|
520
|
+
if ( *current == '\n' ) // convert dos EOL
|
521
|
+
++current;
|
522
|
+
normalized += '\n';
|
523
|
+
}
|
524
|
+
else // handle unix EOL & other char
|
525
|
+
normalized += c;
|
526
|
+
}
|
527
|
+
return normalized;
|
528
|
+
}
|
529
|
+
|
530
|
+
|
531
|
+
// Class StyledStreamWriter
|
532
|
+
// //////////////////////////////////////////////////////////////////
|
533
|
+
|
534
|
+
StyledStreamWriter::StyledStreamWriter( std::string indentation )
|
535
|
+
: document_(NULL)
|
536
|
+
, rightMargin_( 74 )
|
537
|
+
, indentation_( indentation )
|
538
|
+
{
|
539
|
+
}
|
540
|
+
|
541
|
+
|
542
|
+
void
|
543
|
+
StyledStreamWriter::write( std::ostream &out, const Value &root )
|
544
|
+
{
|
545
|
+
document_ = &out;
|
546
|
+
addChildValues_ = false;
|
547
|
+
indentString_ = "";
|
548
|
+
writeCommentBeforeValue( root );
|
549
|
+
writeValue( root );
|
550
|
+
writeCommentAfterValueOnSameLine( root );
|
551
|
+
*document_ << "\n";
|
552
|
+
document_ = NULL; // Forget the stream, for safety.
|
553
|
+
}
|
554
|
+
|
555
|
+
|
556
|
+
void
|
557
|
+
StyledStreamWriter::writeValue( const Value &value )
|
558
|
+
{
|
559
|
+
switch ( value.type() )
|
560
|
+
{
|
561
|
+
case nullValue:
|
562
|
+
pushValue( "null" );
|
563
|
+
break;
|
564
|
+
case intValue:
|
565
|
+
pushValue( valueToString( value.asInt() ) );
|
566
|
+
break;
|
567
|
+
case uintValue:
|
568
|
+
pushValue( valueToString( value.asUInt() ) );
|
569
|
+
break;
|
570
|
+
case realValue:
|
571
|
+
pushValue( valueToString( value.asDouble() ) );
|
572
|
+
break;
|
573
|
+
case stringValue:
|
574
|
+
pushValue( valueToQuotedString( value.asCString() ) );
|
575
|
+
break;
|
576
|
+
case booleanValue:
|
577
|
+
pushValue( valueToString( value.asBool() ) );
|
578
|
+
break;
|
579
|
+
case arrayValue:
|
580
|
+
writeArrayValue( value);
|
581
|
+
break;
|
582
|
+
case objectValue:
|
583
|
+
{
|
584
|
+
Value::Members members( value.getMemberNames() );
|
585
|
+
if ( members.empty() )
|
586
|
+
pushValue( "{}" );
|
587
|
+
else
|
588
|
+
{
|
589
|
+
writeWithIndent( "{" );
|
590
|
+
indent();
|
591
|
+
Value::Members::iterator it = members.begin();
|
592
|
+
while ( true )
|
593
|
+
{
|
594
|
+
const std::string &name = *it;
|
595
|
+
const Value &childValue = value[name];
|
596
|
+
writeCommentBeforeValue( childValue );
|
597
|
+
writeWithIndent( valueToQuotedString( name.c_str() ) );
|
598
|
+
*document_ << " : ";
|
599
|
+
writeValue( childValue );
|
600
|
+
if ( ++it == members.end() )
|
601
|
+
{
|
602
|
+
writeCommentAfterValueOnSameLine( childValue );
|
603
|
+
break;
|
604
|
+
}
|
605
|
+
*document_ << ",";
|
606
|
+
writeCommentAfterValueOnSameLine( childValue );
|
607
|
+
}
|
608
|
+
unindent();
|
609
|
+
writeWithIndent( "}" );
|
610
|
+
}
|
611
|
+
}
|
612
|
+
break;
|
613
|
+
}
|
614
|
+
}
|
615
|
+
|
616
|
+
|
617
|
+
void
|
618
|
+
StyledStreamWriter::writeArrayValue( const Value &value )
|
619
|
+
{
|
620
|
+
unsigned size = value.size();
|
621
|
+
if ( size == 0 )
|
622
|
+
pushValue( "[]" );
|
623
|
+
else
|
624
|
+
{
|
625
|
+
bool isArrayMultiLine = isMultineArray( value );
|
626
|
+
if ( isArrayMultiLine )
|
627
|
+
{
|
628
|
+
writeWithIndent( "[" );
|
629
|
+
indent();
|
630
|
+
bool hasChildValue = !childValues_.empty();
|
631
|
+
unsigned index =0;
|
632
|
+
while ( true )
|
633
|
+
{
|
634
|
+
const Value &childValue = value[index];
|
635
|
+
writeCommentBeforeValue( childValue );
|
636
|
+
if ( hasChildValue )
|
637
|
+
writeWithIndent( childValues_[index] );
|
638
|
+
else
|
639
|
+
{
|
640
|
+
writeIndent();
|
641
|
+
writeValue( childValue );
|
642
|
+
}
|
643
|
+
if ( ++index == size )
|
644
|
+
{
|
645
|
+
writeCommentAfterValueOnSameLine( childValue );
|
646
|
+
break;
|
647
|
+
}
|
648
|
+
*document_ << ",";
|
649
|
+
writeCommentAfterValueOnSameLine( childValue );
|
650
|
+
}
|
651
|
+
unindent();
|
652
|
+
writeWithIndent( "]" );
|
653
|
+
}
|
654
|
+
else // output on a single line
|
655
|
+
{
|
656
|
+
assert( childValues_.size() == size );
|
657
|
+
*document_ << "[ ";
|
658
|
+
for ( unsigned index =0; index < size; ++index )
|
659
|
+
{
|
660
|
+
if ( index > 0 )
|
661
|
+
*document_ << ", ";
|
662
|
+
*document_ << childValues_[index];
|
663
|
+
}
|
664
|
+
*document_ << " ]";
|
665
|
+
}
|
666
|
+
}
|
667
|
+
}
|
668
|
+
|
669
|
+
|
670
|
+
bool
|
671
|
+
StyledStreamWriter::isMultineArray( const Value &value )
|
672
|
+
{
|
673
|
+
int size = value.size();
|
674
|
+
bool isMultiLine = size*3 >= rightMargin_ ;
|
675
|
+
childValues_.clear();
|
676
|
+
for ( int index =0; index < size && !isMultiLine; ++index )
|
677
|
+
{
|
678
|
+
const Value &childValue = value[index];
|
679
|
+
isMultiLine = isMultiLine ||
|
680
|
+
( (childValue.isArray() || childValue.isObject()) &&
|
681
|
+
childValue.size() > 0 );
|
682
|
+
}
|
683
|
+
if ( !isMultiLine ) // check if line length > max line length
|
684
|
+
{
|
685
|
+
childValues_.reserve( size );
|
686
|
+
addChildValues_ = true;
|
687
|
+
int lineLength = 4 + (size-1)*2; // '[ ' + ', '*n + ' ]'
|
688
|
+
for ( int index =0; index < size && !isMultiLine; ++index )
|
689
|
+
{
|
690
|
+
writeValue( value[index] );
|
691
|
+
lineLength += int( childValues_[index].length() );
|
692
|
+
isMultiLine = isMultiLine && hasCommentForValue( value[index] );
|
693
|
+
}
|
694
|
+
addChildValues_ = false;
|
695
|
+
isMultiLine = isMultiLine || lineLength >= rightMargin_;
|
696
|
+
}
|
697
|
+
return isMultiLine;
|
698
|
+
}
|
699
|
+
|
700
|
+
|
701
|
+
void
|
702
|
+
StyledStreamWriter::pushValue( const std::string &value )
|
703
|
+
{
|
704
|
+
if ( addChildValues_ )
|
705
|
+
childValues_.push_back( value );
|
706
|
+
else
|
707
|
+
*document_ << value;
|
708
|
+
}
|
709
|
+
|
710
|
+
|
711
|
+
void
|
712
|
+
StyledStreamWriter::writeIndent()
|
713
|
+
{
|
714
|
+
/*
|
715
|
+
Some comments in this method would have been nice. ;-)
|
716
|
+
|
717
|
+
if ( !document_.empty() )
|
718
|
+
{
|
719
|
+
char last = document_[document_.length()-1];
|
720
|
+
if ( last == ' ' ) // already indented
|
721
|
+
return;
|
722
|
+
if ( last != '\n' ) // Comments may add new-line
|
723
|
+
*document_ << '\n';
|
724
|
+
}
|
725
|
+
*/
|
726
|
+
*document_ << '\n' << indentString_;
|
727
|
+
}
|
728
|
+
|
729
|
+
|
730
|
+
void
|
731
|
+
StyledStreamWriter::writeWithIndent( const std::string &value )
|
732
|
+
{
|
733
|
+
writeIndent();
|
734
|
+
*document_ << value;
|
735
|
+
}
|
736
|
+
|
737
|
+
|
738
|
+
void
|
739
|
+
StyledStreamWriter::indent()
|
740
|
+
{
|
741
|
+
indentString_ += indentation_;
|
742
|
+
}
|
743
|
+
|
744
|
+
|
745
|
+
void
|
746
|
+
StyledStreamWriter::unindent()
|
747
|
+
{
|
748
|
+
assert( indentString_.size() >= indentation_.size() );
|
749
|
+
indentString_.resize( indentString_.size() - indentation_.size() );
|
750
|
+
}
|
751
|
+
|
752
|
+
|
753
|
+
void
|
754
|
+
StyledStreamWriter::writeCommentBeforeValue( const Value &root )
|
755
|
+
{
|
756
|
+
if ( !root.hasComment( commentBefore ) )
|
757
|
+
return;
|
758
|
+
*document_ << normalizeEOL( root.getComment( commentBefore ) );
|
759
|
+
*document_ << "\n";
|
760
|
+
}
|
761
|
+
|
762
|
+
|
763
|
+
void
|
764
|
+
StyledStreamWriter::writeCommentAfterValueOnSameLine( const Value &root )
|
765
|
+
{
|
766
|
+
if ( root.hasComment( commentAfterOnSameLine ) )
|
767
|
+
*document_ << " " + normalizeEOL( root.getComment( commentAfterOnSameLine ) );
|
768
|
+
|
769
|
+
if ( root.hasComment( commentAfter ) )
|
770
|
+
{
|
771
|
+
*document_ << "\n";
|
772
|
+
*document_ << normalizeEOL( root.getComment( commentAfter ) );
|
773
|
+
*document_ << "\n";
|
774
|
+
}
|
775
|
+
}
|
776
|
+
|
777
|
+
|
778
|
+
bool
|
779
|
+
StyledStreamWriter::hasCommentForValue( const Value &value )
|
780
|
+
{
|
781
|
+
return value.hasComment( commentBefore )
|
782
|
+
|| value.hasComment( commentAfterOnSameLine )
|
783
|
+
|| value.hasComment( commentAfter );
|
784
|
+
}
|
785
|
+
|
786
|
+
|
787
|
+
std::string
|
788
|
+
StyledStreamWriter::normalizeEOL( const std::string &text )
|
789
|
+
{
|
790
|
+
std::string normalized;
|
791
|
+
normalized.reserve( text.length() );
|
792
|
+
const char *begin = text.c_str();
|
793
|
+
const char *end = begin + text.length();
|
794
|
+
const char *current = begin;
|
795
|
+
while ( current != end )
|
796
|
+
{
|
797
|
+
char c = *current++;
|
798
|
+
if ( c == '\r' ) // mac or dos EOL
|
799
|
+
{
|
800
|
+
if ( *current == '\n' ) // convert dos EOL
|
801
|
+
++current;
|
802
|
+
normalized += '\n';
|
803
|
+
}
|
804
|
+
else // handle unix EOL & other char
|
805
|
+
normalized += c;
|
806
|
+
}
|
807
|
+
return normalized;
|
808
|
+
}
|
809
|
+
|
810
|
+
|
811
|
+
std::ostream& operator<<( std::ostream &sout, const Value &root )
|
812
|
+
{
|
813
|
+
Json::StyledStreamWriter writer;
|
814
|
+
writer.write(sout, root);
|
815
|
+
return sout;
|
816
|
+
}
|
817
|
+
|
818
|
+
|
819
|
+
} // namespace Json
|