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+# CMAKE generated file: DO NOT EDIT!
+# Generated by "Unix Makefiles" Generator, CMake Version 2.8
+
+# Relative path conversion top directories.
+SET(CMAKE_RELATIVE_PATH_TOP_SOURCE "/Users/chase/Desktop/tmp_workspace/ngs_server/ext/bamtools")
+SET(CMAKE_RELATIVE_PATH_TOP_BINARY "/Users/chase/Desktop/tmp_workspace/ngs_server/ext/bamtools")
+
+# Force unix paths in dependencies.
+SET(CMAKE_FORCE_UNIX_PATHS 1)
+
+# The C and CXX include file search paths:
+SET(CMAKE_C_INCLUDE_PATH
+  "src"
+  )
+SET(CMAKE_CXX_INCLUDE_PATH ${CMAKE_C_INCLUDE_PATH})
+SET(CMAKE_Fortran_INCLUDE_PATH ${CMAKE_C_INCLUDE_PATH})
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+# ==========================
+# BamTools CMakeLists.txt
+# (c) 2010 Derek Barnett
+#
+# src/api/
+# ==========================
+
+# list include paths
+include_directories( ${BamTools_SOURCE_DIR}/src )
+
+# add compiler definitions 
+add_definitions( -DBAMTOOLS_API_LIBRARY ) # (for proper exporting of library symbols)
+add_definitions( -fPIC ) # (attempt to force PIC compiling on CentOS, not being set on shared libs by CMake)
+
+# list of all BamTools API source (.cpp) files
+set( BamToolsAPISources
+        BamAlignment.cpp
+        BamMultiReader.cpp
+        BamReader.cpp
+        BamWriter.cpp
+        SamHeader.cpp
+        SamProgram.cpp
+        SamProgramChain.cpp
+        SamReadGroup.cpp
+        SamReadGroupDictionary.cpp
+        SamSequence.cpp
+        SamSequenceDictionary.cpp
+        internal/BamHeader_p.cpp
+        internal/BamIndexFactory_p.cpp
+        internal/BamMultiReader_p.cpp
+        internal/BamRandomAccessController_p.cpp
+        internal/BamReader_p.cpp
+        internal/BamStandardIndex_p.cpp
+        internal/BamToolsIndex_p.cpp
+        internal/BamWriter_p.cpp
+        internal/BgzfStream_p.cpp
+        internal/SamFormatParser_p.cpp
+        internal/SamFormatPrinter_p.cpp
+        internal/SamHeaderValidator_p.cpp
+)
+
+# create main BamTools API shared library
+add_library( BamTools SHARED ${BamToolsAPISources} )
+set_target_properties( BamTools PROPERTIES SOVERSION "1.0.2" )
+set_target_properties( BamTools PROPERTIES OUTPUT_NAME "bamtools" )
+
+# create main BamTools API static library
+add_library( BamTools-static STATIC ${BamToolsAPISources} )
+set_target_properties( BamTools-static PROPERTIES OUTPUT_NAME "bamtools" )
+set_target_properties( BamTools-static PROPERTIES PREFIX "lib" )
+
+# link libraries with zlib automatically
+target_link_libraries( BamTools z )
+target_link_libraries( BamTools-static z )
+
+# set library install destinations
+install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin")
+install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools")
+
+# export API headers
+include(../ExportHeader.cmake)
+set(ApiIncludeDir "api")
+ExportHeader(APIHeaders api_global.h             ${ApiIncludeDir})
+ExportHeader(APIHeaders BamAlignment.h           ${ApiIncludeDir})
+ExportHeader(APIHeaders BamAux.h                 ${ApiIncludeDir})
+ExportHeader(APIHeaders BamConstants.h           ${ApiIncludeDir})
+ExportHeader(APIHeaders BamIndex.h               ${ApiIncludeDir})
+ExportHeader(APIHeaders BamMultiReader.h         ${ApiIncludeDir})
+ExportHeader(APIHeaders BamReader.h              ${ApiIncludeDir})
+ExportHeader(APIHeaders BamWriter.h              ${ApiIncludeDir})
+ExportHeader(APIHeaders SamConstants.h           ${ApiIncludeDir})
+ExportHeader(APIHeaders SamHeader.h              ${ApiIncludeDir})
+ExportHeader(APIHeaders SamProgram.h             ${ApiIncludeDir})
+ExportHeader(APIHeaders SamProgramChain.h        ${ApiIncludeDir})
+ExportHeader(APIHeaders SamReadGroup.h           ${ApiIncludeDir})
+ExportHeader(APIHeaders SamReadGroupDictionary.h ${ApiIncludeDir})
+ExportHeader(APIHeaders SamSequence.h            ${ApiIncludeDir})
+ExportHeader(APIHeaders SamSequenceDictionary.h  ${ApiIncludeDir})