ngs_server 0.1

data/ext/bamtools/src/third_party/jsoncpp/json_reader.h

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+// Copyright 2007-2010 Baptiste Lepilleur
+// Distributed under MIT license, or public domain if desired and
+// recognized in your jurisdiction.
+// See file LICENSE for detail or copy at http://jsoncpp.sourceforge.net/LICENSE
+
+#ifndef CPPTL_JSON_READER_H_INCLUDED
+# define CPPTL_JSON_READER_H_INCLUDED
+
+# include "json_features.h"
+# include "json_value.h"
+# include <deque>
+# include <stack>
+# include <string>
+# include <iostream>
+
+namespace Json {
+
+   /** \brief Unserialize a <a HREF="http://www.json.org">JSON</a> document into a Value.
+    *
+    */
+   class JSON_API Reader
+   {
+   public:
+      typedef char Char;
+      typedef const Char *Location;
+
+      /** \brief Constructs a Reader allowing all features
+       * for parsing.
+       */
+      Reader();
+
+      /** \brief Constructs a Reader allowing the specified feature set
+       * for parsing.
+       */
+      Reader( const Features &features );
+
+      /** \brief Read a Value from a <a HREF="http://www.json.org">JSON</a> document.
+       * \param document UTF-8 encoded string containing the document to read.
+       * \param root [out] Contains the root value of the document if it was
+       *             successfully parsed.
+       * \param collectComments \c true to collect comment and allow writing them back during
+       *                        serialization, \c false to discard comments.
+       *                        This parameter is ignored if Features::allowComments_
+       *                        is \c false.
+       * \return \c true if the document was successfully parsed, \c false if an error occurred.
+       */
+      bool parse( const std::string &document, 
+                  Value &root,
+                  bool collectComments = true );
+
+      /** \brief Read a Value from a <a HREF="http://www.json.org">JSON</a> document.
+       * \param document UTF-8 encoded string containing the document to read.
+       * \param root [out] Contains the root value of the document if it was
+       *             successfully parsed.
+       * \param collectComments \c true to collect comment and allow writing them back during
+       *                        serialization, \c false to discard comments.
+       *                        This parameter is ignored if Features::allowComments_
+       *                        is \c false.
+       * \return \c true if the document was successfully parsed, \c false if an error occurred.
+       */
+      bool parse( const char *beginDoc, const char *endDoc, 
+                  Value &root,
+                  bool collectComments = true );
+
+      /// \brief Parse from input stream.
+      /// \see Json::operator>>(std::istream&, Json::Value&).
+      bool parse( std::istream &is,
+                  Value &root,
+                  bool collectComments = true );
+
+      /** \brief Returns a user friendly string that list errors in the parsed document.
+       * \return Formatted error message with the list of errors with their location in 
+       *         the parsed document. An empty string is returned if no error occurred
+       *         during parsing.
+       */
+      std::string getFormatedErrorMessages() const;
+
+   private:
+      enum TokenType
+      {
+         tokenEndOfStream = 0,
+         tokenObjectBegin,
+         tokenObjectEnd,
+         tokenArrayBegin,
+         tokenArrayEnd,
+         tokenString,
+         tokenNumber,
+         tokenTrue,
+         tokenFalse,
+         tokenNull,
+         tokenArraySeparator,
+         tokenMemberSeparator,
+         tokenComment,
+         tokenError
+      };
+
+      class Token
+      {
+      public:
+         TokenType type_;
+         Location start_;
+         Location end_;
+      };
+
+      class ErrorInfo
+      {
+      public:
+         Token token_;
+         std::string message_;
+         Location extra_;
+      };
+
+      typedef std::deque<ErrorInfo> Errors;
+
+      bool expectToken( TokenType type, Token &token, const char *message );
+      bool readToken( Token &token );
+      void skipSpaces();
+      bool match( Location pattern, 
+                  int patternLength );
+      bool readComment();
+      bool readCStyleComment();
+      bool readCppStyleComment();
+      bool readString();
+      void readNumber();
+      bool readValue();
+      bool readObject( Token &token );
+      bool readArray( Token &token );
+      bool decodeNumber( Token &token );
+      bool decodeString( Token &token );
+      bool decodeString( Token &token, std::string &decoded );
+      bool decodeDouble( Token &token );
+      bool decodeUnicodeCodePoint( Token &token, 
+                                   Location &current, 
+                                   Location end, 
+                                   unsigned int &unicode );
+      bool decodeUnicodeEscapeSequence( Token &token, 
+                                        Location &current, 
+                                        Location end, 
+                                        unsigned int &unicode );
+      bool addError( const std::string &message, 
+                     Token &token,
+                     Location extra = 0 );
+      bool recoverFromError( TokenType skipUntilToken );
+      bool addErrorAndRecover( const std::string &message, 
+                               Token &token,
+                               TokenType skipUntilToken );
+      void skipUntilSpace();
+      Value &currentValue();
+      Char getNextChar();
+      void getLocationLineAndColumn( Location location,
+                                     int &line,
+                                     int &column ) const;
+      std::string getLocationLineAndColumn( Location location ) const;
+      void addComment( Location begin, 
+                       Location end, 
+                       CommentPlacement placement );
+      void skipCommentTokens( Token &token );
+   
+      typedef std::stack<Value *> Nodes;
+      Nodes nodes_;
+      Errors errors_;
+      std::string document_;
+      Location begin_;
+      Location end_;
+      Location current_;
+      Location lastValueEnd_;
+      Value *lastValue_;
+      std::string commentsBefore_;
+      Features features_;
+      bool collectComments_;
+   };
+
+   /** \brief Read from 'sin' into 'root'.
+
+    Always keep comments from the input JSON.
+
+    This can be used to read a file into a particular sub-object.
+    For example:
+    \code
+    Json::Value root;
+    cin >> root["dir"]["file"];
+    cout << root;
+    \endcode
+    Result:
+    \verbatim
+    {
+	"dir": {
+	    "file": {
+		// The input stream JSON would be nested here.
+	    }
+	}
+    }
+    \endverbatim
+    \throw std::exception on parse error.
+    \see Json::operator<<()
+   */
+   std::istream& operator>>( std::istream&, Value& );
+
+} // namespace Json
+
+#endif // CPPTL_JSON_READER_H_INCLUDED

data/ext/bamtools/src/third_party/jsoncpp/json_tool.h

@@ -0,0 +1,93 @@
+// Copyright 2007-2010 Baptiste Lepilleur
+// Distributed under MIT license, or public domain if desired and
+// recognized in your jurisdiction.
+// See file LICENSE for detail or copy at http://jsoncpp.sourceforge.net/LICENSE
+
+#ifndef LIB_JSONCPP_JSON_TOOL_H_INCLUDED
+# define LIB_JSONCPP_JSON_TOOL_H_INCLUDED
+
+/* This header provides common string manipulation support, such as UTF-8,
+ * portable conversion from/to string...
+ *
+ * It is an internal header that must not be exposed.
+ */
+
+namespace Json {
+
+/// Converts a unicode code-point to UTF-8.
+static inline std::string 
+codePointToUTF8(unsigned int cp)
+{
+   std::string result;
+   
+   // based on description from http://en.wikipedia.org/wiki/UTF-8
+
+   if (cp <= 0x7f) 
+   {
+      result.resize(1);
+      result[0] = static_cast<char>(cp);
+   } 
+   else if (cp <= 0x7FF) 
+   {
+      result.resize(2);
+      result[1] = static_cast<char>(0x80 | (0x3f & cp));
+      result[0] = static_cast<char>(0xC0 | (0x1f & (cp >> 6)));
+   } 
+   else if (cp <= 0xFFFF) 
+   {
+      result.resize(3);
+      result[2] = static_cast<char>(0x80 | (0x3f & cp));
+      result[1] = 0x80 | static_cast<char>((0x3f & (cp >> 6)));
+      result[0] = 0xE0 | static_cast<char>((0xf & (cp >> 12)));
+   }
+   else if (cp <= 0x10FFFF) 
+   {
+      result.resize(4);
+      result[3] = static_cast<char>(0x80 | (0x3f & cp));
+      result[2] = static_cast<char>(0x80 | (0x3f & (cp >> 6)));
+      result[1] = static_cast<char>(0x80 | (0x3f & (cp >> 12)));
+      result[0] = static_cast<char>(0xF0 | (0x7 & (cp >> 18)));
+   }
+
+   return result;
+}
+
+
+/// Returns true if ch is a control character (in range [0,32[).
+static inline bool 
+isControlCharacter(char ch)
+{
+   return ch > 0 && ch <= 0x1F;
+}
+
+
+enum { 
+   /// Constant that specify the size of the buffer that must be passed to uintToString.
+   uintToStringBufferSize = 3*sizeof(UInt)+1 
+};
+
+// Defines a char buffer for use with uintToString().
+typedef char UIntToStringBuffer[uintToStringBufferSize];
+
+
+/** Converts an unsigned integer to string.
+ * @param value Unsigned interger to convert to string
+ * @param current Input/Output string buffer. 
+ *        Must have at least uintToStringBufferSize chars free.
+ */
+static inline void 
+uintToString( UInt value, 
+              char *&current )
+{
+   *--current = 0;
+   do
+   {
+      *--current = char(value % 10) + '0';
+      value /= 10;
+   }
+   while ( value != 0 );
+}
+
+} // namespace Json {
+
+#endif // LIB_JSONCPP_JSON_TOOL_H_INCLUDED