neurohmmer 0.1.0

metadata

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+--- !ruby/object:Gem::Specification
+name: neurohmmer
+version: !ruby/object:Gem::Version
+  version: 0.1.0
+platform: ruby
+authors:
+- Ismail Moghul
+- Maurice Elphick
+- Yannick Wurm
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2015-11-17 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.10'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.10'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+- !ruby/object:Gem::Dependency
+  name: rspec
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.4'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.4'
+- !ruby/object:Gem::Dependency
+  name: bio
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.5'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.5'
+- !ruby/object:Gem::Dependency
+  name: bio-hmmer3_report
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.1'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.1'
+- !ruby/object:Gem::Dependency
+  name: slim
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+description: |-
+  Identify Neuropeptides using powerful Hidden Markov Models.
+
+   For further information please refer to: https://github.com/wurmlab/neurohmmer
+email:
+- ismail.moghul@gmail.com
+executables:
+- neurohmmer
+extensions: []
+extra_rdoc_files: []
+files:
+- ".gitignore"
+- CODE_OF_CONDUCT.md
+- Gemfile
+- LICENSE
+- README.md
+- Rakefile
+- bin/neurohmmer
+- data/hmm/CRH_DH44.fa.hmm
+- data/hmm/Chordate_Glucagon_PACAP.fa.hmm
+- data/hmm/Chordate_Neurotensin_precursors_neurotensin_like_Ciona.fa.hmm
+- data/hmm/Deutrostomian_tachykinin.fa.hmm
+- data/hmm/Gastrin_releasing_peptide.fa.hmm
+- data/hmm/GnRH.fa.hmm
+- data/hmm/Hypocretin_orexin.fa.hmm
+- data/hmm/Lophotrochozoan_luqin_arthropod_RYamide.fa.hmm
+- data/hmm/NPFF.fa.hmm
+- data/hmm/NPS.fa.hmm
+- data/hmm/PTH.fa.hmm
+- data/hmm/Protostomian_Allatostatin_B.fa.hmm
+- data/hmm/Protostomian_CCH_amide.fa.hmm
+- data/hmm/Protostomian_Ecdysis_Triggering_Hormone.fa.hmm
+- data/hmm/Protostomian_PDF.fa.hmm
+- data/hmm/Protostomian_allatostatin_C.fa.hmm
+- data/hmm/Protostomian_proctolin.fa.hmm
+- data/hmm/Putative_chordate_Opioid.fa.hmm
+- data/hmm/SIF.fa.hmm
+- data/hmm/TRH.fa.hmm
+- data/hmm/allatotropin.fa.hmm
+- data/hmm/ambulacrarian_amphioxus_NPS-like.fa.hmm
+- data/hmm/avp.fa.hmm
+- data/hmm/calcitonin_DH31.fa.hmm
+- data/hmm/cholecystokinin_sulfakinin.fa.hmm
+- data/hmm/chordate_OX26_QRFP.fa.hmm
+- data/hmm/chordate_somatostatin_cortistatin_like.fa.hmm
+- data/hmm/f_type_SALMF.fa.hmm
+- data/hmm/galanin.fa.hmm
+- data/hmm/l_type_SALMF.fa.hmm
+- data/hmm/nmu_pyrokinin.fa.hmm
+- data/hmm/npy_npf.fa.hmm
+- data/hmm/protostomian_CCAP.fa.hmm
+- data/hmm/protostomian_allatostatinA_buccalin.fa.hmm
+- data/hmm/protostomian_leucokinin.fa.hmm
+- data/hmm/protostomian_tackykinin.fa.hmm
+- data/hmm/tachykinin.fa.hmm
+- data/hmm/vertebrate_ghrelin_motilin.fa.hmm
+- data/raw_data/CRH_DH44.fa
+- data/raw_data/CRH_DH44.fa.aligned.fa
+- data/raw_data/Chordate_Glucagon_PACAP.fa
+- data/raw_data/Chordate_Glucagon_PACAP.fa.aligned.fa
+- data/raw_data/Chordate_Neurotensin_precursors_neurotensin_like_Ciona.fa
+- data/raw_data/Chordate_Neurotensin_precursors_neurotensin_like_Ciona.fa.aligned.fa
+- data/raw_data/Deutrostomian_tachykinin.fa
+- data/raw_data/Deutrostomian_tachykinin.fa.aligned.fa
+- data/raw_data/Gastrin_releasing_peptide.fa
+- data/raw_data/Gastrin_releasing_peptide.fa.aligned.fa
+- data/raw_data/GnRH.fa
+- data/raw_data/GnRH.fa.aligned.fa
+- data/raw_data/Hypocretin_orexin.fa
+- data/raw_data/Hypocretin_orexin.fa.aligned.fa
+- data/raw_data/Lophotrochozoan_luqin_arthropod_RYamide.fa
+- data/raw_data/Lophotrochozoan_luqin_arthropod_RYamide.fa.aligned.fa
+- data/raw_data/NPFF.fa
+- data/raw_data/NPFF.fa.aligned.fa
+- data/raw_data/NPS.fa
+- data/raw_data/NPS.fa.aligned.fa
+- data/raw_data/PTH.fa
+- data/raw_data/PTH.fa.aligned.fa
+- data/raw_data/Protostomian_Allatostatin_B.fa
+- data/raw_data/Protostomian_Allatostatin_B.fa.aligned.fa
+- data/raw_data/Protostomian_CCH_amide.fa
+- data/raw_data/Protostomian_CCH_amide.fa.aligned.fa
+- data/raw_data/Protostomian_Ecdysis_Triggering_Hormone.fa
+- data/raw_data/Protostomian_Ecdysis_Triggering_Hormone.fa.aligned.fa
+- data/raw_data/Protostomian_PDF.fa
+- data/raw_data/Protostomian_PDF.fa.aligned.fa
+- data/raw_data/Protostomian_allatostatin_C.fa
+- data/raw_data/Protostomian_allatostatin_C.fa.aligned.fa
+- data/raw_data/Protostomian_proctolin.fa
+- data/raw_data/Protostomian_proctolin.fa.aligned.fa
+- data/raw_data/Putative_chordate_Opioid.fa
+- data/raw_data/Putative_chordate_Opioid.fa.aligned.fa
+- data/raw_data/SIF.fa
+- data/raw_data/SIF.fa.aligned.fa
+- data/raw_data/TRH.fa
+- data/raw_data/TRH.fa.aligned.fa
+- data/raw_data/allatotropin.fa
+- data/raw_data/allatotropin.fa.aligned.fa
+- data/raw_data/ambulacrarian_amphioxus_NPS-like.fa
+- data/raw_data/ambulacrarian_amphioxus_NPS-like.fa.aligned.fa
+- data/raw_data/avp.fa
+- data/raw_data/avp.fa.aligned.fa
+- data/raw_data/calcitonin_DH31.fa
+- data/raw_data/calcitonin_DH31.fa.aligned.fa
+- data/raw_data/cholecystokinin_sulfakinin.fa
+- data/raw_data/cholecystokinin_sulfakinin.fa.aligned.fa
+- data/raw_data/chordate_OX26_QRFP.fa
+- data/raw_data/chordate_OX26_QRFP.fa.aligned.fa
+- data/raw_data/chordate_somatostatin_cortistatin_like.fa
+- data/raw_data/chordate_somatostatin_cortistatin_like.fa.aligned.fa
+- data/raw_data/f_type_SALMF.fa
+- data/raw_data/f_type_SALMF.fa.aligned.fa
+- data/raw_data/galanin.fa
+- data/raw_data/galanin.fa.aligned.fa
+- data/raw_data/kisspeptin.fa
+- data/raw_data/kisspeptin.fa.aligned.fa
+- data/raw_data/l_type_SALMF.fa
+- data/raw_data/l_type_SALMF.fa.aligned.fa
+- data/raw_data/nmu_pyrokinin.fa
+- data/raw_data/nmu_pyrokinin.fa.aligned.fa
+- data/raw_data/npy_npf.fa
+- data/raw_data/npy_npf.fa.aligned.fa
+- data/raw_data/protostomian_CCAP.fa
+- data/raw_data/protostomian_CCAP.fa.aligned.fa
+- data/raw_data/protostomian_allatostatinA_buccalin.fa
+- data/raw_data/protostomian_allatostatinA_buccalin.fa.aligned.fa
+- data/raw_data/protostomian_leucokinin.fa
+- data/raw_data/protostomian_leucokinin.fa.aligned.fa
+- data/raw_data/protostomian_tackykinin.fa
+- data/raw_data/protostomian_tackykinin.fa.aligned.fa
+- data/raw_data/tachykinin.fa.aligned.fa
+- data/raw_data/vertebrate_ghrelin_motilin.fa
+- data/raw_data/vertebrate_ghrelin_motilin.fa.aligned.fa
+- lib/neurohmmer.rb
+- lib/neurohmmer/arg_validators.rb
+- lib/neurohmmer/hmmer.rb
+- lib/neurohmmer/output.rb
+- lib/neurohmmer/version.rb
+- neurohmmer.gemspec
+- spec/neurohmmer_spec.rb
+- spec/spec_helper.rb
+- template/contents.slim
+homepage: https://github.com/wurmlab/neurohmmer
+licenses:
+- AGPL
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: 2.0.0
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.4.8
+signing_key: 
+specification_version: 4
+summary: 'Identify Neuropeptides using powerful Hidden Markov Models.  For further
+  information please refer to: https://github.com/wurmlab/neurohmmer'
+test_files:
+- spec/neurohmmer_spec.rb
+- spec/spec_helper.rb
+has_rdoc: