neurohmmer 0.1.0

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Files changed (133) hide show
  1. checksums.yaml +7 -0
  2. data/.gitignore +35 -0
  3. data/CODE_OF_CONDUCT.md +13 -0
  4. data/Gemfile +4 -0
  5. data/LICENSE +662 -0
  6. data/README.md +136 -0
  7. data/Rakefile +17 -0
  8. data/bin/neurohmmer +69 -0
  9. data/data/hmm/CRH_DH44.fa.hmm +427 -0
  10. data/data/hmm/Chordate_Glucagon_PACAP.fa.hmm +484 -0
  11. data/data/hmm/Chordate_Neurotensin_precursors_neurotensin_like_Ciona.fa.hmm +526 -0
  12. data/data/hmm/Deutrostomian_tachykinin.fa.hmm +367 -0
  13. data/data/hmm/Gastrin_releasing_peptide.fa.hmm +448 -0
  14. data/data/hmm/GnRH.fa.hmm +370 -0
  15. data/data/hmm/Hypocretin_orexin.fa.hmm +451 -0
  16. data/data/hmm/Lophotrochozoan_luqin_arthropod_RYamide.fa.hmm +385 -0
  17. data/data/hmm/NPFF.fa.hmm +430 -0
  18. data/data/hmm/NPS.fa.hmm +790 -0
  19. data/data/hmm/PTH.fa.hmm +502 -0
  20. data/data/hmm/Protostomian_Allatostatin_B.fa.hmm +835 -0
  21. data/data/hmm/Protostomian_CCH_amide.fa.hmm +415 -0
  22. data/data/hmm/Protostomian_Ecdysis_Triggering_Hormone.fa.hmm +433 -0
  23. data/data/hmm/Protostomian_PDF.fa.hmm +265 -0
  24. data/data/hmm/Protostomian_allatostatin_C.fa.hmm +352 -0
  25. data/data/hmm/Protostomian_proctolin.fa.hmm +346 -0
  26. data/data/hmm/Putative_chordate_Opioid.fa.hmm +802 -0
  27. data/data/hmm/SIF.fa.hmm +286 -0
  28. data/data/hmm/TRH.fa.hmm +910 -0
  29. data/data/hmm/allatotropin.fa.hmm +433 -0
  30. data/data/hmm/ambulacrarian_amphioxus_NPS-like.fa.hmm +847 -0
  31. data/data/hmm/avp.fa.hmm +475 -0
  32. data/data/hmm/calcitonin_DH31.fa.hmm +418 -0
  33. data/data/hmm/cholecystokinin_sulfakinin.fa.hmm +433 -0
  34. data/data/hmm/chordate_OX26_QRFP.fa.hmm +475 -0
  35. data/data/hmm/chordate_somatostatin_cortistatin_like.fa.hmm +361 -0
  36. data/data/hmm/f_type_SALMF.fa.hmm +811 -0
  37. data/data/hmm/galanin.fa.hmm +391 -0
  38. data/data/hmm/l_type_SALMF.fa.hmm +523 -0
  39. data/data/hmm/nmu_pyrokinin.fa.hmm +424 -0
  40. data/data/hmm/npy_npf.fa.hmm +301 -0
  41. data/data/hmm/protostomian_CCAP.fa.hmm +415 -0
  42. data/data/hmm/protostomian_allatostatinA_buccalin.fa.hmm +706 -0
  43. data/data/hmm/protostomian_leucokinin.fa.hmm +511 -0
  44. data/data/hmm/protostomian_tackykinin.fa.hmm +760 -0
  45. data/data/hmm/tachykinin.fa.hmm +541 -0
  46. data/data/hmm/vertebrate_ghrelin_motilin.fa.hmm +382 -0
  47. data/data/raw_data/CRH_DH44.fa +44 -0
  48. data/data/raw_data/CRH_DH44.fa.aligned.fa +242 -0
  49. data/data/raw_data/Chordate_Glucagon_PACAP.fa +18 -0
  50. data/data/raw_data/Chordate_Glucagon_PACAP.fa.aligned.fa +72 -0
  51. data/data/raw_data/Chordate_Neurotensin_precursors_neurotensin_like_Ciona.fa +10 -0
  52. data/data/raw_data/Chordate_Neurotensin_precursors_neurotensin_like_Ciona.fa.aligned.fa +25 -0
  53. data/data/raw_data/Deutrostomian_tachykinin.fa +1283 -0
  54. data/data/raw_data/Deutrostomian_tachykinin.fa.aligned.fa +5707 -0
  55. data/data/raw_data/Gastrin_releasing_peptide.fa +12 -0
  56. data/data/raw_data/Gastrin_releasing_peptide.fa.aligned.fa +25 -0
  57. data/data/raw_data/GnRH.fa +22 -0
  58. data/data/raw_data/GnRH.fa.aligned.fa +66 -0
  59. data/data/raw_data/Hypocretin_orexin.fa +14 -0
  60. data/data/raw_data/Hypocretin_orexin.fa.aligned.fa +49 -0
  61. data/data/raw_data/Lophotrochozoan_luqin_arthropod_RYamide.fa +26 -0
  62. data/data/raw_data/Lophotrochozoan_luqin_arthropod_RYamide.fa.aligned.fa +91 -0
  63. data/data/raw_data/NPFF.fa +16 -0
  64. data/data/raw_data/NPFF.fa.aligned.fa +48 -0
  65. data/data/raw_data/NPS.fa +8 -0
  66. data/data/raw_data/NPS.fa.aligned.fa +24 -0
  67. data/data/raw_data/PTH.fa +24 -0
  68. data/data/raw_data/PTH.fa.aligned.fa +144 -0
  69. data/data/raw_data/Protostomian_Allatostatin_B.fa +17 -0
  70. data/data/raw_data/Protostomian_Allatostatin_B.fa.aligned.fa +120 -0
  71. data/data/raw_data/Protostomian_CCH_amide.fa +24 -0
  72. data/data/raw_data/Protostomian_CCH_amide.fa.aligned.fa +72 -0
  73. data/data/raw_data/Protostomian_Ecdysis_Triggering_Hormone.fa +24 -0
  74. data/data/raw_data/Protostomian_Ecdysis_Triggering_Hormone.fa.aligned.fa +84 -0
  75. data/data/raw_data/Protostomian_PDF.fa +16 -0
  76. data/data/raw_data/Protostomian_PDF.fa.aligned.fa +32 -0
  77. data/data/raw_data/Protostomian_allatostatin_C.fa +28 -0
  78. data/data/raw_data/Protostomian_allatostatin_C.fa.aligned.fa +56 -0
  79. data/data/raw_data/Protostomian_proctolin.fa +16 -0
  80. data/data/raw_data/Protostomian_proctolin.fa.aligned.fa +32 -0
  81. data/data/raw_data/Putative_chordate_Opioid.fa +8 -0
  82. data/data/raw_data/Putative_chordate_Opioid.fa.aligned.fa +32 -0
  83. data/data/raw_data/SIF.fa +28 -0
  84. data/data/raw_data/SIF.fa.aligned.fa +70 -0
  85. data/data/raw_data/TRH.fa +10 -0
  86. data/data/raw_data/TRH.fa.aligned.fa +50 -0
  87. data/data/raw_data/allatotropin.fa +31 -0
  88. data/data/raw_data/allatotropin.fa.aligned.fa +90 -0
  89. data/data/raw_data/ambulacrarian_amphioxus_NPS-like.fa +8 -0
  90. data/data/raw_data/ambulacrarian_amphioxus_NPS-like.fa.aligned.fa +24 -0
  91. data/data/raw_data/avp.fa +28 -0
  92. data/data/raw_data/avp.fa.aligned.fa +70 -0
  93. data/data/raw_data/calcitonin_DH31.fa +36 -0
  94. data/data/raw_data/calcitonin_DH31.fa.aligned.fa +126 -0
  95. data/data/raw_data/cholecystokinin_sulfakinin.fa +28 -0
  96. data/data/raw_data/cholecystokinin_sulfakinin.fa.aligned.fa +84 -0
  97. data/data/raw_data/chordate_OX26_QRFP.fa +10 -0
  98. data/data/raw_data/chordate_OX26_QRFP.fa.aligned.fa +25 -0
  99. data/data/raw_data/chordate_somatostatin_cortistatin_like.fa +10 -0
  100. data/data/raw_data/chordate_somatostatin_cortistatin_like.fa.aligned.fa +20 -0
  101. data/data/raw_data/f_type_SALMF.fa +118 -0
  102. data/data/raw_data/f_type_SALMF.fa.aligned.fa +590 -0
  103. data/data/raw_data/galanin.fa +93 -0
  104. data/data/raw_data/galanin.fa.aligned.fa +552 -0
  105. data/data/raw_data/kisspeptin.fa +16 -0
  106. data/data/raw_data/kisspeptin.fa.aligned.fa +0 -0
  107. data/data/raw_data/l_type_SALMF.fa +68 -0
  108. data/data/raw_data/l_type_SALMF.fa.aligned.fa +170 -0
  109. data/data/raw_data/nmu_pyrokinin.fa +18 -0
  110. data/data/raw_data/nmu_pyrokinin.fa.aligned.fa +63 -0
  111. data/data/raw_data/npy_npf.fa +20 -0
  112. data/data/raw_data/npy_npf.fa.aligned.fa +40 -0
  113. data/data/raw_data/protostomian_CCAP.fa +14 -0
  114. data/data/raw_data/protostomian_CCAP.fa.aligned.fa +42 -0
  115. data/data/raw_data/protostomian_allatostatinA_buccalin.fa +100 -0
  116. data/data/raw_data/protostomian_allatostatinA_buccalin.fa.aligned.fa +1350 -0
  117. data/data/raw_data/protostomian_leucokinin.fa +18 -0
  118. data/data/raw_data/protostomian_leucokinin.fa.aligned.fa +63 -0
  119. data/data/raw_data/protostomian_tackykinin.fa +504 -0
  120. data/data/raw_data/protostomian_tackykinin.fa.aligned.fa +2002 -0
  121. data/data/raw_data/tachykinin.fa.aligned.fa +13546 -0
  122. data/data/raw_data/vertebrate_ghrelin_motilin.fa +16 -0
  123. data/data/raw_data/vertebrate_ghrelin_motilin.fa.aligned.fa +32 -0
  124. data/lib/neurohmmer.rb +89 -0
  125. data/lib/neurohmmer/arg_validators.rb +71 -0
  126. data/lib/neurohmmer/hmmer.rb +71 -0
  127. data/lib/neurohmmer/output.rb +50 -0
  128. data/lib/neurohmmer/version.rb +4 -0
  129. data/neurohmmer.gemspec +34 -0
  130. data/spec/neurohmmer_spec.rb +11 -0
  131. data/spec/spec_helper.rb +2 -0
  132. data/template/contents.slim +55 -0
  133. metadata +269 -0
data/data/raw_data/ambulacrarian_amphioxus_NPS-like.fa ADDED
@@ -0,0 +1,8 @@
1
+ >gi_390337096_Spur
2
+ MGYERRILRTLLSILIVLASFVTVYGERDSNFMQHKLFRNIVPSPLIQKWRENRMGPAEEKTSNEQWRDELLSNLRNVLRKHNASPSSRSIDRSDITGYGLQEPMQQLPADVTADQLFILEGAVNSPTENYEEETPIDEDKRNGFFFGKRNGFFFGKRSDSDASSTKMDDDRLPKYKSSGSFDKCRPCGPGRQGRCVMVGTCCSPLFGCYLFTPEAAACMTEDVSPCQLNAPSCGLAGKCVADGICCSAAEGACHLDPTCTSMSLN
3
+ >jgi_Contig31671_Elphick2012_paper_Skow
4
+ MLRKINAVVFFLVAICTLSRATFGEDGMTEKQVLKLHKYWPKEDISELGSSSTSGDSGENEAVKMGFWAVDGKRNGFWNGKRNGFWNGKRNFDDLRIFGTNKKHSSINNQKRNGFWNGKRNFDDFEIPEKKEQPHWRDEKKNGFWNDGKRNFDNFKTDDLQYPSIEDKRNGFWNGKRNFEMSMNKKASASTESEKRNGFYMGKRSVDNTMNISSYHYKESAKKCTTCGPGGKGQCVMYGVCCSLEIGCSMLTKETEECTTSPLVGECGRSDVQCGNFFRCVANGVCCTKETQSCKIDQECNVRW
5
+ >A. japonicus NGIWYamide precursor
6
+ MAVEAKIVSCLVCIWLTSTVYSQSNTGRTHDYGELSKAVDTFLDILMDEENFDDVNNIESWETVLKEDINPKLRILAHVMRSLSSRPDTSSLREQVFPSDYISRYLQEILTDEQPFWDESSPKLPSLQTPELDQIKASADERNNFWSDNPSHRPPEGIPFSAGEESKRNGIWYGKRKSSLDGEAVKRNGIWYGKRSSPPVDDKRNGIWYGKRNGIWYGKRNGIWYGKRDDSLYSEEMM
7
+
8
+ x
data/data/raw_data/ambulacrarian_amphioxus_NPS-like.fa.aligned.fa ADDED
@@ -0,0 +1,24 @@
1
+ >gi_390337096_Spur
2
+ MGYERRILRTLLSILIVLASFVTV---------YGE------------------RDSNFM
3
+ Q----------------------------------HKLFRNIVPSPLIQK----------
4
+ --WRENR---------------MGP-AEEKTSNEQW---------------------RDE
5
+ LLSNLRNV--LRKHNASPSSRSIDRSDITGYGLQEPMQQLPADVTADQLFILE-------
6
+ ------GAVNSPTENYEE------ETPIDEDKRNGFFFGKRN------------------
7
+ -GFFFGKRSDSDASSTKMDDDRLPKYKSSGSFDKCRPCGPGRQGRCVMVGTCCSPLFGCY
8
+ LFTPEAAACMTED-VSPCQLNAPSCGLAGKCVADGICCSAAEGACHLDPTCTSMSLN---
9
+ >jgi_Contig31671_Elphick2012_paper_Skow
10
+ M------LRKINAVVFFLVAICTLSRAT-----FGE------------------DGMTEK
11
+ Q----VLKL--------------------------HKYW----PKEDISE----------
12
+ --LGSSS---TSGDSGENEAVKMGFWAVDGKRNGFW------------------NGKRNG
13
+ FWNGKRNFDDLRIFGTNKKHSSINNQ--KRNGFWNGKRNF------DDFEIPEKKEQPHW
14
+ RDEKKNGFWNDGKRNFDNFKTDDLQYPSIEDKRNGFWNGKRNFEMSMNKKASASTESEKR
15
+ NGFYMGKRSVDNTMN-------ISSYHYKESAKKCTTCGPGGKGQCVMYGVCCSLEIGCS
16
+ MLTKETEECTTSPLVGECGRSDVQCGNFFRCVANGVCCTKETQSCKIDQEC-----NVRW
17
+ >A. japonicus NGIWYamide precursor
18
+ MAVEAKIVSCL--VCIWLTSTVYSQSNTGRTHDYGELSKAVDTFLDILMDEENFDDVNNI
19
+ ESWETVLKEDINPKLRILAHVMRSLSSRPDTSSLREQVF----PSDYISRYLQEILTDEQ
20
+ PFWDESSPKLPSLQTPELDQIK----ASADERNNFWSDNPSHRPPEGIPFSAGEESKRNG
21
+ IWYGKRK-------------SSLDGEAVKRNGIWYGKR----------------------
22
+ ------------------------SSPPVDDKRNGIWYGKRN-----------GIWYGKR
23
+ NGIWYGKRDDS-------------------------------------------------
24
+ LYSEEMMX----------------------------------------------------
data/data/raw_data/avp.fa ADDED
@@ -0,0 +1,28 @@
1
+ >Uniprot_AVP_Hsap
2
+ MPDTMLPACFLGLLAFSSACYFQNCPRGGKRAMSDLELRQCLPCGPGGKGRCFGPSICCADELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAAFGVCCNDESCVTEPECREGFHRRARASDRSNATQLDGPAGALLLRLVQLAGAPEPFEPAQPDAY
3
+ >Uniprot_Oxt_Hsap
4
+ MAGPSLACCLLGLLALTSACYIQNCPLGGKRAAPDLDVRKCLPCGPGGKGRCFGPNICCAEELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAVLGLCCSPDGCHADPACDAEATFSQR
5
+ >Uniprot_Vasotocin_Trub
6
+ MPQCALLLSLLGLLALSSACYIQNCPRGGKRALPETGIRQCMSCGPRDRGRCFGPNICCGEGLGCLMGSPETARCAGENYLLTPCQAGGRPCGSEGGRCAVSGLCCNSESCAVDSDCLGETEALEPGDSSAGSSPTELLLRLLHMSSRVEPHKCTLI
7
+ >Uniprot_Isotocin_Trub
8
+ MTGTAISVCLLFLLSVCSACYISNCPIGGKRSIMDAPQRKCMSCGPGDRGRCFGPGICCGESFGCLMGSPESARCAEENYLLTPCQAGGRPCGSEGGRCASSGLCCDAESCTMDQSCLSEEEGDERGSLFDGSDSGDVILKLLRLAGLTSPHQTH
9
+ >Ensembl_ENSPMAT00000000263_Pmar
10
+ MARCAPLTLAVSVLSLVLISSACYIQNCPRGGKRDLTDSVRQRQCLPCGPGGQGRCFGPRICCGEAMGCRLGGPDVAICRAERLMPSPCESRGEPCGHGGKCGAPGLCCSSGEVLQRP
11
+ >Ghost_KH.C6.11.v1.A.SL1-1_Cint
12
+ MYRQFSIVLILLANSLILDACFFRDCSNMDWYRKRGQEITDPRKQLFQELPEFLDNRPFQCNKDESNTGNECKFSGQKICCQETDDGQVICAVSATELQHRFLSSGVLQQVQRILHEFVEISSRGAPQKRRYCIKVGVCCSWDRCRPQVSCSYKDQDIPSHKEVFQDQTALVNRISHLLQDMY
13
+ >Bflo_jgi_84802
14
+ MWRFGMVLSVVLILVVVAATVGHSAGCYIINCPRGGKRALENRSGPAARECPRCGPSLSGQCIGPTTCCSPQAGCTRSLRVALECSMENLVPVPCRLSGPSCTLPGQQTGTCVGEGMCCMDGEKCSLSPECSMRTAEDEEARRQERRSVLPNWVLPGNTPPDIQKWW
15
+ >Skow_gi_187155721
16
+ MFGTPERLSWKVLTIAVIFVCATTTCEACFISDCARGGKRSPGSALTGAGHPLRQCISCGSNNSGHCIGPSICCGDFGCYFGTQETAVCQEEKSIPVPCESKGTPCGEYGHGNCVADKICCEEYNCSYDANCTTKNDGFQKADSSSSTAFKRAFKDLLEDK
17
+ >GLEAN_06899_Spur
18
+ MMSVKSIVTCLFLSLVLALWIGGSFACFISNCPKGGKRSNSRPLRQCLECGPGGVGRCMGPGICCGPTIGCHINTQHTLSCMRENEISTPCELPGNPCQTVPSGTCGAMGVCCNSNSCSEDASCLMIEEDDSLKRFEQMSREENGSTRKDLRVKLLDLLLNMQDQ
19
+ >jgi_173251_Ctel
20
+ MRHSSDAVNSVVLCGRLLLLFACISCCIETTSGCFIRNCPIGGKRSSVPSRISAQKECMACGPNGLGQCVGPNTCCGQDIGCFMGTQEAKMCGEENDSPIPCRVDGAACGRNDGGRCVAEQICCNEDKCSHDSSCQSKAKRQHDNLSQDLLRYMHQLMTLKSLGGRR
21
+ >jgi_53893_Lgig
22
+ MCFSSFQYILSLFVFMCVIFGANSCFIRNCPTGGKRAIEASEIGHKCMSCGPGNVGQCVGPNICCGRFGCYIGTKETEICEHENDSTVACRVEGKLCGSRQQGQCVANGICCDS
23
+ >jgi_59567_Dpul
24
+ MAGLWTFCLIALSMTEMIIPLTAKPCFITNCPPGGKRSSQLVEPSSYLECAPCGPAGKGTCLGANLCCGSHFGCFFKTEETNVCLLTNLKSTQICNQHFWKTDLKSASCSLNGDKIDGICVADLLCCSLGNLPQDDL
25
+ >gi_145651810_Tcas
26
+ MSTIITSIILLVLSESLVSGCLITNCPRGGKRSKFAISENAVKPCVSCGPGQSGQCFGPSICCGPFGCLVGTPETLRCQREGFFHEREPCIAGSAPCRKNTGRCAFDGICCSQDSCHADKSCASDDKSPIDLYTLINYQAELAGDK
27
+ >Ensembl_F39C12.4_Cele
28
+ MGSSPILLVLAISIGLASACFLNSCPYRRYGRTIRCSSCGIENEGVCISEGRCCTNEECFMSTECSYSAVCPELFCKIGHHPGYCMKKGYCCTQGGCQTSAMC
data/data/raw_data/avp.fa.aligned.fa ADDED
@@ -0,0 +1,70 @@
1
+ >Uniprot_AVP_Hsap
2
+ MPDTM--------------LPACFLGLLAFSSACYFQNCP------RGGKRAM-------
3
+ ------SD-LELRQCLPCGPGGKGRC--FGPSICCAD----ELGCFVGTAEALRCQEENY
4
+ L--PSPC--------------QSGQKAC---GS--GGRCAAFGVCC-NDESCVTEPECRE
5
+ GFHRRARASDRSNATQLDGPA---GALLLRLVQLAGAPEPFEPAQPDA---Y
6
+ >Uniprot_Oxt_Hsap
7
+ MAGPS--------------LACCLLGLLALTSACYIQNCP------LGGKRAA-------
8
+ ------PD-LDVRKCLPCGPGGKGRC--FGPNICCAE----ELGCFVGTAEALRCQEENY
9
+ L--PSPC--------------QSGQKAC---GS--GGRCAVLGLCC-SPDGCHADPACDA
10
+ ----EATFSQR-----------------------------------------
11
+ >Uniprot_Vasotocin_Trub
12
+ MPQCA--------------LLLSLLGLLALSSACYIQNCP------RGGKRAL-------
13
+ ------PE-TGIRQCMSCGPRDRGRC--FGPNICCGE----GLGCLMGSPETARCAGENY
14
+ L--LTPC--------------QAGGRPC---GS-EGGRCAVSGLCC-NSESCAVDSDCLG
15
+ ----ETEALEPGDSSAGSSP----TELLLRLLHMSSRVEPHKCTL------I
16
+ >Uniprot_Isotocin_Trub
17
+ MTGTA--------------ISVCLLFLLSVCSACYISNCP------IGGKRSI-------
18
+ ------MD-APQRKCMSCGPGDRGRC--FGPGICCGE----SFGCLMGSPESARCAEENY
19
+ L--LTPC--------------QAGGRPC---GS-EGGRCASSGLCC-DAESCTMDQSCLS
20
+ ----EEEGDERGSLFDGSDS----GDVILKLLRLAGLTSPHQTH--------
21
+ >Ensembl_ENSPMAT00000000263_Pmar
22
+ MARCAP-----------LTLAVSVLSLVLISSACYIQNCP------RGGKRDL-------
23
+ ------TDSVRQRQCLPCGPGGQGRC--FGPRICCGE----AMGCRLGGPDVAICRAERL
24
+ M--PSPC--------------ESRGEPC---GH--GGKCGAPGLCC-SS-----------
25
+ ------------------------GEVLQR---------P------------
26
+ >Ghost_KH.C6.11.v1.A.SL1-1_Cint
27
+ MYRQF--------SIVLILLANSL-----ILDACFFRDCSNMDWYRKRGQEITDPRKQLF
28
+ QELPEFLD-NRPFQCNKDESNTGNECKFSGQKICCQETDDGQVICAVSATEL----QHRF
29
+ L--SSGVLQQVQRILHEFVEISSRGAPQ------KRRYCIKVGVCC-SWDRCRPQVSCSY
30
+ --KDQDIPSHKEVFQDQ-------TALVNRISHLLQDMY-------------
31
+ >Bflo_jgi_84802
32
+ MWRFG-----MVLSVVLILVVVAA--TVGHSAGCYIINCP------RGGKRAL-------
33
+ ----ENRSGPAARECPRCGPSLSGQC--IGPTTCCSP----QAGCTRSLRVALECSMENL
34
+ V--PVPC--------------RLSGPSCTLPGQ-QTGTCVGEGMCCMDGEKCSLSPECSM
35
+ -RTAEDEEARRQER-----------------RSVLPNWVLPGNTPPDIQKWW
36
+ >Skow_gi_187155721
37
+ MFGTP-----ERLSWKVLTIAVIFVCATTTCEACFISDCA------RGGKRSPGS-----
38
+ ---ALTGAGHPLRQCISCGSNNSGHC--IGPSICCGD-----FGCYFGTQETAVCQEEKS
39
+ I--PVPC--------------ESKGTPC---GEYGHGNCVADKICC-EEYNCSYDANCTT
40
+ ----KNDGFQKADSSSS-------TAFKRAFKDLLEDK--------------
41
+ >GLEAN_06899_Spur
42
+ MMSVK-----SIVTCLFLSLVLAL--WIGGSFACFISNCP------KGGKRSNS------
43
+ ---------RPLRQCLECGPGGVGRC--MGPGICCGP----TIGCHINTQHTLSCMRENE
44
+ I--STPC--------------ELPGNPC---QTVPSGTCGAMGVCC-NSNSCSEDASCLM
45
+ --IEEDDSLKRFEQMSREENGSTRKDLRVKLLDLLLNMQDQ-----------
46
+ >jgi_173251_Ctel
47
+ MRHSSDAVNSVVLCGRLLLLFACISCCIETTSGCFIRNCP------IGGKRSS-------
48
+ ----VPSRISAQKECMACGPNGLGQC--VGPNTCCGQ----DIGCFMGTQEAKMCGEEND
49
+ S--PIPC--------------RVDGAAC---GRNDGGRCVAEQICC-NEDKCSHDSSCQS
50
+ KAKRQHDNLS--------------QDLLRYMHQLMTLKSLGGRR--------
51
+ >jgi_53893_Lgig
52
+ MCFSS---FQYILS---LFVFMCV---IFGANSCFIRNCP------TGGKRAI-------
53
+ ----EASEIG--HKCMSCGPGNVGQC--VGPNICCGR-----FGCYIGTKETEICEHEND
54
+ S--TVAC--------------RVEGKLC---GSRQQGQCVANGICC-DS-----------
55
+ ----------------------------------------------------
56
+ >jgi_59567_Dpul
57
+ MAGLW--------TFCLIALSMTEMIIPLTAKPCFITNCP------PGGKRSS-------
58
+ ----QLVEPSSYLECAPCGPAGKGTC--LGANLCCGS----HFGCFFKTEETNVCLLTNL
59
+ K-STQICNQH-------FWKTDLKSASCSLNGDKIDGICVADLLCC-SLGNLPQD-----
60
+ ----------------------------------------------DL----
61
+ >gi_145651810_Tcas
62
+ MSTII-------TSIILLVLSESL------VSGCLITNCP------RGGKRSK-------
63
+ ---FAISE-NAVKPCVSCGPGQSGQC--FGPSICCG-----PFGCLVGTPETLRCQREGF
64
+ FHEREPC--------------IAGSAPC---RK-NTGRCAFDGICC-SQDSCHADKSCAS
65
+ ---DDKSPIDL-------------YTLINYQAELAGDK--------------
66
+ >Ensembl_F39C12.4_Cele
67
+ MGSSP----------ILLVLAISI----GLASACFLNSCP----YRRYGRTIR-------
68
+ --------------CSSCGIENEGVC--ISEGRCCTNEE-----CFMSTE----CSY---
69
+ ---SAVCPEL-------F---------CKI-GH-HPGYCMKKGYCC-TQGGCQTSAMC--
70
+ ----------------------------------------------------
data/data/raw_data/calcitonin_DH31.fa ADDED
@@ -0,0 +1,36 @@
1
+ >Uniprot_CGRP1_Hsap
2
+ MGFQKFSPFLALSILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQNYVQMKASELEQEQEREGSRIIAQKRACDTATCVTHRLAGLLSRSGGVVKNNFVPTNVGSKAFGRRRRDLQA
3
+ >Uniprot_Calc_Hsap
4
+ MGFQKFSPFLALSILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQNYVQMKASELEQEQEREGSSLDSPRSKRCGNLSTCMLGTYTQDFNKFHTFPQTAIGVGAPGKKRDMSSDLERDHRPHVSMPQNAN
5
+ >Uniprot_IAPP_Hsap
6
+ MGILKLQVFLIVLSVALNHLKATPIESHQVEKRKCNTATCATQRLANFLVHSSNNFGAILSSTNVGSNTYGKRNAVEVLKREPLNYLPL
7
+ >Uniprot_ADML_Hsap
8
+ MKLVSVALMYLGSLAFLGADTARLDVASEFRKKWNKWALSRGKRELRMSSSYPTGLADVKAGPAQTLIRPQDMKGASRSPEDSSPDAARIRVKRYRQSMNNFQGLRSFGCRFGTCTVQKLAHQIYQFTDKDKDNVAPRSKISPQGYGRRRRRSLPEAGPGRTLVSSKPQAHGAPAPPSGSAPHFL
9
+ >Uniprot_ADM2_Hsap
10
+ MARIPTAALGCISLLCLQLPGSLSRSLGGDPRPVKPREPPARSPSSSLQPRHPAPRPVVWKLHRALQAQRGAGLAPVMGQPLRDGGRQHSGPRRHSGPRRTQAQLLRVGCVLGTCQVQNLSHRLWQLMGPAGRQDSAPVDPSSPHSYG
11
+ >Ghost_KH.C7.399.v1.A.SL1-1_Cint
12
+ MVMNTFCSLLFILLVFCVYNASTTGGIYNRLLHPRGTGRQQLLYHNFNNRYGEVLKRNQPSRSDYDTHDELIKNVQPLQQRQEEKLNKLEKLFADIMLEDNSYKNVLFSKKQESNEIDIEPSMMRDTRNNFLEMLQLSNWIHRVLSRLAATPHEQQAAPVTGKRCDGVSTCWLHELGNSVHATAAGKQNVGFGPGRK
13
+ >jgi_87904_Bflo
14
+ MMTTEVGRFLLCACVTFSILLTTCTAAPTARGELPEASLRLSEEDVGRVVSAMAREVLQIVNENVDKLAQPNEFGYGLDGLPQGPVYKRGKIACKTAWCMNNRLSHNLSSLDNPTDTGVGAPGRKRRDTS
15
+ >jgi_87907_Bflo
16
+ MLLGNMLVNTVAALTVCVVVFWGTDHVGALPRPADDGDNPLAMTNSDMRRIVSALIREVDQLAAEKLAAQRVFGPGIRKRDCSTLTCFNQKLAHELAMDNQRTDTANPYSPGRKRRSAEEDDH
17
+ >jgi_87911_Bflo
18
+ MRPCFALMVLAFFVLVHTNQLTASVIRRYDDDMYDYDGDMEPLLALLGQQAGRVYHGLARELLDNIEDNTNTQDNRFSRTYEDMMDPMAMRVRRKCESGTCVQMHLADRLRLGLGHNMFTNTGPESPGRKKRSLGASRRAARRL
19
+ >gi_115767208_Spur
20
+ MKSTVIVTLTICCLLYQTTRAASLTNRDGLSRQDILDLLQLYEEPIRQEGGDKRSKGCGSFSGCMQMEVAKNRVAALLRNSNAHLFGLNGPGKRRRSVDDLPQVNDAETE
21
+ >gi_187217193_Skow
22
+ MDRLIVASSAFLVILYITCFVDVTIAYDDSESEEVVPPNYWSLQLAELTELVKLGEEVLAQKASAEMKAAKRGRGTSACGGFATCKQLEYGRKYATSKADLSHFGATSPGRKRRTTNSELDKQA
23
+ >gi_161220966_Ctel
24
+ MYVQVLSLLLGCVLLGGRISEAADERESEDLQEALRVYQNLGETRKGLTALKRVVSDLDGDILQKHDFHDLARKRKGLDILRRILSEMEADLIYEQKRTCQFNLGGHCATESAASVADHWHYLNSPLSPGRKRRDTGLYKAVVSGRIFKDSKH
25
+ >jgi_215078_Ctel
26
+ MVSQFLIESELSPRVLSIMNSAVMRFSLIAMASCIVIASLTSRAQATSLHRQRRDVTEPSLAIAVLEDLIMELRDEIHSKKKRRFDAGYGSRYGVAQSVGSKLMALKQAADWNGPGRKRREAEEEA
27
+ >gi_163526287_Lgig
28
+ MISTTPLYVTVSICLFYLTTTVYCRTDFRFLMKRDTRNNINTDSLQETLKNLDDEYQRLQKRTCAFGINSHQCTLTSLNNKMMSQAWLSDGMSPGKRSDLPNLTPDGRTQRLLDEMSNTKALLTVRDILTQADSPTARKRSCSLRLGGMCLTENLNAAANQYEYLSSGLSPGRKRRSLRHILLNRXH
29
+ >jgi_166645_Lgig
30
+ MGASILLGLTILLSYVNQVHLQMFHPRDISRGGQQQEEQLRRGYLIQILKSFLNRRQEDATEKRKRSCNLNLGFHCQTDEYSSIADMYDFLQSALSPGKRKRNVKIVSIEGS
31
+ >jgi_299999_Lgig
32
+ MSRFVMTIFFLLVACLALIVPGSAAPPRRPMLVDLDDPDSVMEVITRLERSLLRNSDYEHQKRGVDFGLGRGYSGSQAAKHLMGLAAANYAIGPGRKRRDTTESTPEDVKTGAIN
33
+ >Ensembl_FBtr0079699_DH31_Dmel
34
+ MTNRCACFALAFLLFCLLAISSIEAAPMPRYQSNGGYGGAGYNELEEVPDDLLMELMTRFGRTIIRARNDLENSKRTVDFGLARGYSGTQEAKHRMGLAAANFAGGPGRRRRSETDV
35
+ >Ensembl_ZK287.3_Cele
36
+ MSCSSSSMLFLVLIATTVLIAESRVFYNRFDGGLSSDRFMEQKRDGAEASYDYDANQVIRNTMKRNRQCLLNAGLSQGCDFSDLLHAQTQARKFMSFAGPGK
data/data/raw_data/calcitonin_DH31.fa.aligned.fa ADDED
@@ -0,0 +1,126 @@
1
+ >Uniprot_CGRP1_Hsap
2
+ MGFQ--------------KFSPFLALSILVLLQAGSLHAAPF------------------
3
+ ---------------RSALESSPADP----------------ATLSEDEA----------
4
+ -------RLLLAALVQNYVQMK--------------------------------------
5
+ ------ASELEQEQERE-----------------------------------GSRI----
6
+ ----IAQKRACDT-ATCV----THRLAGLLSRSGGVVKNNFVP-TNVGSKAFGRRR----
7
+ ---RDLQA-----------------------------
8
+ >Uniprot_Calc_Hsap
9
+ MGFQ--------------KFSPFLALSILVLLQAGSLHAAPF------------------
10
+ ---------------RSALESSPADP----------------ATLSEDEA----------
11
+ -------RLLLAALVQNYVQMK--------------------------------------
12
+ ------ASELEQEQERE-----------------------------------GSSLD---
13
+ ----SPRSKRCGNLSTCMLGTYTQDFNKF---------HTFPQ-TAIGVGAPGKKRDMSS
14
+ DLERDHRPHVSM--------------------PQNAN
15
+ >Uniprot_IAPP_Hsap
16
+ MG--------------------ILKLQVFLIVLSVA------------------------
17
+ ------------------------------------------------------------
18
+ ----------LNHLKATPIESH--------------------------------------
19
+ ------------------------------------------------------------
20
+ ----QVEKRKCNT-ATCA----TQRLANFLVHSSNNFGAILSS-TNVGSNTYGKRNAVEV
21
+ -LKREPLNYLPL-------------------------
22
+ >Uniprot_ADML_Hsap
23
+ MK--------------------LVSVALMYLGSLAFLGADTARLDVASEF----------
24
+ -----RKKWNKWALSRGKRELRMSSS--------------YPTGLADVKAGP--------
25
+ --------------AQTLIRPQDMKGASRSPEDSS-------------------------
26
+ ----PDAARIRVKRYRQSMNNF-----------------------------QG-------
27
+ -----LRSFGCRF-GTCT----VQKLAHQIYQFTDKDKDNVAPRSKISPQGYGRRR----
28
+ --RRSLPEAGPGRTLVSSKPQAHGAPAPPSGSAPHFL
29
+ >Uniprot_ADM2_Hsap
30
+ MA--R------------IPTAALGCISLLCLQLPGSLSRSLGGD----------------
31
+ ---------PRPVKPREPPARSPSSSLQPRHPAPRPVVWKLHRALQAQRG----------
32
+ --------AGLAPVMGQPLRDGGRQH----------------------------------
33
+ ------SGPRRHSGPRRTQAQLLR---------------------------VG-------
34
+ ----------CVL-GTCQ----VQNLSHRLWQLM----------------GPAGRQ----
35
+ ---DSAPVDPS--------------------SPHSYG
36
+ >Ghost_KH.C7.399.v1.A.SL1-1_Cint
37
+ MV-----------------MNTFCSLLFILLVFCVYNASTTGGIY--NRLLHPRGTGRQQ
38
+ LLYHNFNNRYGEVLKRNQPSRSDYDT--------HDELIKNVQPLQQRQEE--KLNK---
39
+ ----------LEKLFADIMLEDNSYKNVLFSKKQE-------------------------
40
+ ----SNEIDIEPSMMRDTRNNFLEMLQLSNWIHRVLSRLAATPHEQQAAPVTG-------
41
+ --------KRCDGVSTCW----LHELGNSVHATAAG-KQNVGF-------GPGRK-----
42
+ -------------------------------------
43
+ >jgi_87904_Bflo
44
+ MMTTE------------VGRFLLCACVTFSILLTTCTAAPTA------------------
45
+ ----------------------------------RGELPEASLRLSEED-----------
46
+ ------VGRVVSAMAREVLQIVN-------------------------------------
47
+ ------ENVDKLAQPNEFGYGL-DGLP------------------------QGPVY----
48
+ ----KRGKIACKT-AWCM----NNRLSHN--------LSSLDNPTDTGVGAPGRKR----
49
+ ---RDTS------------------------------
50
+ >jgi_87907_Bflo
51
+ ML---------------LGNMLVNTVAALTVCVVVFWGTDHVGA----------------
52
+ -------------LPRPADDGDN------------------PLAMTNSD-----------
53
+ ----------MRRIVSALIREV--------------------------------------
54
+ ------DQLAAEKLAAQRVFGP------------------------------G-------
55
+ -----IRKRDCST-LTCF----NQKLAHE-LA-----MDNQRT-DTANPYSPGRKR----
56
+ ---RSAEEDDH--------------------------
57
+ >jgi_87911_Bflo
58
+ MR----------------PCFALMVLAFFVLVHTNQLTASV-------------------
59
+ -------------IRRYDDDMYDYDG----------DMEPLLALLGQQAG----------
60
+ --------RVYHGLARELLDNI--------------------------------------
61
+ ------EDNTNTQDNR-----------------------------------FSRTYEDMM
62
+ DPMAMRVRRKCES-GTCV----QMHLADR-LRLGL--GHNMFT--NTGPESPGRKK----
63
+ ---RSLGASRR---------------------AARRL
64
+ >gi_115767208_Spur
65
+ MK----------------------STVIVTLTICCLLYQTTR------------------
66
+ ---------AASLTNRDGLSRQDILD----------------------------------
67
+ ----------LLQLYEEPIRQE--------------------------------------
68
+ ----------------------------------------------------GGD-----
69
+ -----KRSKGCGSFSGCM----QMEVAKNRVAAL---LRNSNA-HLFGLNGPGKRR----
70
+ ---RSVDDLPQVN-------------------DAETE
71
+ >gi_187217193_Skow
72
+ MD-----------------RLIVASSAFLVILYITCFVDVTI------------------
73
+ -----------------AYDDSESEEVVPPNY-W-------SLQLAELTE----------
74
+ ----------LVKLGEEVLAQK--------------------------------------
75
+ ------ASAEMKAAKR------------------------------------G-------
76
+ -----RGTSACGGFATCK----QLEYGRK-YATS---KADLSH---FGATSPGRKR----
77
+ ---RTTNSELD-----------------------KQA
78
+ >gi_161220966_Ctel
79
+ MYVQ----------------------VLSLLLGCVLLGGRISEA----------------
80
+ ------------ADERESEDLQEALR--------------VYQNLGETRK----------
81
+ --GLTALKRVVSDLDGDILQKHDFHDLARKRKGLDI--------LRRILSEM--------
82
+ ------EADLIYEQKRTCQFNL------------------------------G-------
83
+ --------------GHCA----TESAASV---------ADHWH-YLNSPLSPGRKR----
84
+ ---RDTGLYKAVVS--------------GRIFKDSKH
85
+ >jgi_215078_Ctel
86
+ MVSQFLIESELSPRVLSIMNSAVMRFSLIAMASCIVIASLTSRA----------------
87
+ ---------QATSLHRQRRDVTEPSL----------------------------------
88
+ ----------AIAVLEDLIMEL--------------------------------------
89
+ ------RDEIHSKKKRRFDAGY------------------------------GSRYGV--
90
+ ----------------------AQSVGSKLMALK----------QAADWNGPGRKR----
91
+ ---REAEEEA---------------------------
92
+ >gi_163526287_Lgig
93
+ MIST-------------TPLYVTVSICLFYLTTTVYCRTDFRFL----------------
94
+ -------------MKRDTRNNINTDS--------------LQETLKNLDDEYQRLQKRTC
95
+ AFGINSHQCTLTSLNNKMMSQAWLSDGMSPGKRSDLPNLTPDGRTQRLLDEMSNTKALLT
96
+ VRDILTQADSPTARKRSCSLRL------------------------------G-------
97
+ --------------GMCL----TENLNAA---------ANQYE-YLSSGLSPGRKR----
98
+ ---RSLRHILL----------------------NRXH
99
+ >jgi_166645_Lgig
100
+ MGAS-------------------------ILLGLTILLSYVNQVH---------------
101
+ -----LQMFHPRDISRGGQQQEEQLR----------------------------------
102
+ -------RGYLIQILKSFLNRR--------------------------------------
103
+ ------QEDATEKRKRSCNLNL------------------------------G-------
104
+ --------------FHCQ----TDEYSSI---------ADMYD-FLQSALSPGKRK----
105
+ ---RNVKIVSIEGS-----------------------
106
+ >jgi_299999_Lgig
107
+ MS------------------RFVMTIFFLLVACLALIVPGSA------------------
108
+ ------------APPR-------------------------RPMLVDLDD----------
109
+ ---PDSVMEVITRLERSLLRNS--------------------------------------
110
+ ---------DYEHQKRGVDFGLGRGY-------------------------SG-------
111
+ ----------------------SQAAKHL-MGLA---AANYAI-------GPGRKR----
112
+ ---RDTTESTPEDV-----------------KTGAIN
113
+ >Ensembl_FBtr0079699_DH31_Dmel
114
+ MT----------------NRCACFALAFLLFCLLAISSIEAA------------------
115
+ ------------PMPRYQSNGGYGGA--------------GYNELEEVPDDL--------
116
+ ------LMELMTRFGRTIIRAR--------------------------------------
117
+ --------NDLENSKRTVDFGLARGY-------------------------SG-------
118
+ ----------------------TQEAKHR-MGLA---AANFAG-------GPGRRR----
119
+ ---RSETDV----------------------------
120
+ >Ensembl_ZK287.3_Cele
121
+ MS------------------CSSSSMLFLVLIATTVLIAESRVFY--NRF----DGG---
122
+ -----LSSDRFMEQKRDGAEASY----------DYD------------------------
123
+ --------------ANQVIRNT--------------------------------------
124
+ -----------MKRNRQCLLNA------------------------------G-------
125
+ ------LSQGCDF-SDLL---HAQTQARKFMSFA----------------GPGK------
126
+ -------------------------------------
data/data/raw_data/cholecystokinin_sulfakinin.fa ADDED
@@ -0,0 +1,28 @@
1
+ >Uniprot_CCK_Hsap
2
+ MNSGVCLCVLMAVLAAGALTQPVPPADPAGSGLQRAEEAPRRQLRVSQRTDGESRAHLGALLARYIQQARKAPSGRMSIVKNLQNLDPSHRISDRDYMGWMDFGRRSAEEYEYPS
3
+ >Uniprot_CCK_Drer
4
+ MNSGVCVCVILPALSVSVSCASRPVSDERFLSARRLARSASLTLQQPLPPAGDIQPDTRANFSQLLAKLISSKKGSVRRNSSMNSRANSVNHRIKDRDYVGWMDFGRRSAEEYEYSS
5
+ >gi_204273783_Ipun
6
+ MNCGVCVCVLLAALSVTFAARTRSSPAQQENDALPLQMDSSVSAGHDANPRANLNELLARLISRKGSVRRNSMANSKASALSANHRIKDRDYLGWMDFGRRSAEEYDYSS
7
+ >AL667803_Cint
8
+ MRSKIVIYFCILVIVTLNVNGVPTSDLFKSVSQYHLPRGKVINKETATKPLQFQRAICRLLQKLGEETFSRLSQSELEAKQLDLIKTCYQANSFGGNENDGHMQRMDRNYYGWMDFGKRGIKDVDYEY
9
+ >gi_187061456_Skow
10
+ MKKLIVFLGIAVLFLIVKGDEVTDELNSAEEVDGASSDESKRDHYGWMNFKKSDPEKKDHYGWMNFKKSDPEKKDHYGWMNFKKSDPEKKDHYGWMNFKKSDPEKKDHYGWMNFKKSDPEKKDHYGWMNFKKSDPEKKDHYGWMNFKKSDPEKKDHYGWMNFKKSDPEKKDYYGWMNFKKSDPEKKDHYGWMN
11
+ >gi_115694514_Spur
12
+ MGTRWFLALLSLFFMLLAPVTSFPTRSTEQSHKNLPGVTSFLRMLKDHIVNRSRGTGSRGPLRGPKGHHQVTPNVNSHNSEVLPAWPPKSKTEDWVLDLAPKDDLSNLANDSERDFSPDVAAAVGSTELEDDKRDYGHGMFFGKRVPNDKYIDRQLEDPTMQRQRRPDDYNWGMWFGKRDKADLYGWGGFFGKRSGDVTEYEDFVA
13
+ >jgi_Ctel_228037
14
+ MKVNYAALSLSLGVVTLLVAQMCAASVSTDDSENVRNEILILAKLLRPIRQLAGRLEDLESIIERAATDREFAMEVAKRQGAAWDMDYGWGGGRFGKRDSGKRTSDSSKRYDAFGLGGRFGRSVDHVDLEKNE
15
+ >gi_260626388_Cgig
16
+ MKNSLEHLLISSVLVLCPLFTLTKGNSHAQNSIIQLSKLFSNLQDIHDAKQTQEENTKDQVRSDTRKQRGEIELILALGAPVHVESLQHNDKDTQTDTDKSAWDVDFEDDQQDVEKRQGAWDYDYGLGGGRFGKRFDYNFGGGRWGRDVDHVKQGQAK
17
+ >CCK_Haliotis_diversicolor
18
+ MDHYMTTVTAVILAFVCVTSLPVNEGDDVSNLANLLGKLRPLHRKRLDSHSRGHFKSTSGNDDKPQSSDLADSKSGVAEDPEDLLTEDVSDMRKRQGAWSYDYGLGGGRFGKRNYGEYGFGGGRFGRDVDHVDLSD
19
+ >gi_163526260_Lgig
20
+ MDQNISLLIICGLFVLVTSLPLKTDDDNVEHLVSLIKKLKSLEKRPETNSRWLDHQLHHLRIDNSPAEKSDSLTSGERDSGILYRSLNSDMDTPSKRQGAWSYDYGLGGGRFGKRSYDDYGIGGGRFGRDVDHVDLADGVLNGA
21
+ >gi_121341705_Acal
22
+ MEPQLLSVVILVLCACAASALPTNSRREDLSHLVTLLGKLKNIERARQNSEGSAQAHAQEAWEGPRVSSFPETEVTADVIPDEVSAAKGYLGQRPATGVVNKRQGAWSYDYGLGGGRFGKRSYGDYGIGGGRFGRDVDHVDLSDATENEITS
23
+ >gi_223770502_Apom
24
+ MKGFAQLLFSFAVALLMIMHVTGSEGSSIGDNSVNEVQSKELLFLAKIVGPLKEIARESEQLASIVERVATDGDLTQELSKRQGAWDMDYGWGGGRFGKRASGTSISQSGKRYDSFGIAGRFGRSVENVEGH
25
+ >Ensembl_FBtr0078989_Dmel
26
+ MGPRSCTHFATLFMPLWALAFCFLVVLPIPAQTTSLQNAKDDRRLQELESKIGGEIDQPIANLVGPSFSLFGDRRNQKTMSFGRRVPLISRPIIPIELDLLMDNDDERTKAKRFDDYGHMRFGKRGGDDQFDDYGHMRFGR
27
+ >jgi_242979_Daphnia
28
+ MKLTMLATVLAAVLVLGVGRATAAPADSSSTATGRRLLHSPNPTSHSKSIDSWLRWLLLRSRIGDKEKTKNGVPSNSFQLARSPVELGSSNPKLQAKLPPAIVQSNDDDETTGFGDEDFADEDVPLVLPEGRQAASKRQPDDYGHMRYGDFDDYGHMRFGRR
data/data/raw_data/cholecystokinin_sulfakinin.fa.aligned.fa ADDED
@@ -0,0 +1,84 @@
1
+ >Uniprot_CCK_Hsap
2
+ MNS---------GVCLCVLMAVLAA--GALTQPVPPADPA-------------GSGLQRA
3
+ EEAPRRQLR-----------------------VSQRTDGE--------------------
4
+ S------------------RAHLGALLARYIQQARKAPSGRMSIVKNLQN----------
5
+ --------------------------LD--PSHRIS------------DRDY-MGWMDFG
6
+ RRS-----------AEEYEYPS-----------------------
7
+ >Uniprot_CCK_Drer
8
+ MNS---------GVCVCVILPALSVSVSCASR--PVSDER-------------FLSARRL
9
+ ARSASLTLQ---------------------QPLPPAGDIQ--------------------
10
+ PD----------------TRANFSQLLAKLIS-SKKGSVRRNSSMNSRAN----------
11
+ ---------------------------S--VNHRIK------------DRDY-VGWMDFG
12
+ RRS-----------AEEYEYSS-----------------------
13
+ >gi_204273783_Ipun
14
+ MNC---------GVCVCVLLAALSVTFAARTRSSPAQQEN--------------------
15
+ -DALPLQMD---------------------SSVSAGHDAN--------------------
16
+ P------------------RANLNELLARLIS--RKGSVRRNSMANSKAS----------
17
+ -------------------------ALS--ANHRIK------------DRDY-LGWMDFG
18
+ RRS-----------AEEYDYSS-----------------------
19
+ >AL667803_Cint
20
+ MRSK-------IVIYFCILVIVTLNVNGVPTSDLFKSVSQ--------------------
21
+ ----------------------YHL-----------------------------------
22
+ PRGKV------INKETATKPLQFQRAICRLLQKLGEETFSRLSQSELEAKQLDLIKTCYQ
23
+ ANSFGGNE-------------------NDGHMQRM-------------DRNY-YGWMDFG
24
+ KRG-------I--KDVDYEY-------------------------
25
+ >gi_187061456_Skow
26
+ MKK---------LIVFLGIAVLFLIVKGDEVTDELNSAEE-------------------V
27
+ DGASSDESKR-----------DHYGWMNF-KKSDPEKKDHYG----------WMNFKKSD
28
+ PEKKDHYGWMNFKKSDPEKKDHYGWMNFKKSDPEKKDHYGWMNFKKSDPEK----KDHYG
29
+ WMNFKKSD-----PEKKDHYGWMNFKKSD-PEKKDHYGWMNFKKSDPEKKDY-YGWMNFK
30
+ KSD--------PEKKDHYGWMN-----------------------
31
+ >gi_115694514_Spur
32
+ MGTR------WFLALLSLFFMLLAPVTSFPTRSTEQSHKN---------LPGVTSFLRML
33
+ KDHIVNRSRGTGSRGPLRGPKGHHQ-------VTPNVNSHNSEV-----LPAWP------
34
+ PKSKTE-DWV-LDLAPKDDLSNLANDSERDFSPDVAAAVGSTELEDDKRD--------YG
35
+ HGMFFGKRV----PNDK----YIDRQLEDPTMQRQR-----------RPDDYNWG-MWFG
36
+ KRD----------KADLYGWGG-FFGKRSGDVTEYEDFV-----A
37
+ >jgi_Ctel_228037
38
+ MKVN----YAALSLSLGVVTLLVAQMCAASVSTDDSENVR----NEILILAKLLRPIRQL
39
+ AGR---------------------------------------------------------
40
+ -----------------------LEDLESIIERAATD-------REFAME----------
41
+ ------------------------------VAKRQGAAW---------DMDYGWGGGRFG
42
+ KRDSGKRTSDSSKRYDAFGLGG-RFG-RSVDHVDLEK------NE
43
+ >gi_260626388_Cgig
44
+ MKNS-----LEHLLISSVLVLCPLFTLTKGNSHAQNSIIQ---------LSKLFSNLQDI
45
+ HDAKQTQEENTK------------------DQVRSDTRKQRGEIELILALGA--------
46
+ PVHVES-----------------LQHNDKDTQTDTDKSAWDVDFEDDQQD----------
47
+ ------------------------------VEKRQG-AW---------DYDYGLGGGRFG
48
+ KRF-------------DYNFGGGRWG-RDVDHVKQGQ------AK
49
+ >CCK_Haliotis_diversicolor
50
+ MDHY--------MTTVTAVILAFVCVTSLPVN-EGDDVSN---------LANLLGKLRPL
51
+ HRKRLDSHS-----------RGHFK-------STSGNDDK--------------------
52
+ PQSSDL----------ADSKSGVAEDPEDLLTEDVSD-----------------------
53
+ ------------------------------MRKRQG-AW---------SYDYGLGGGRFG
54
+ KRN-----------YGEYGFGGGRFG-RDVDHVDLSD--------
55
+ >gi_163526260_Lgig
56
+ MDQN---------ISLLIICGLFVLVTSLPLKTDDDNVEH---------LVSLIKKLKSL
57
+ EKRPETNSRWLD-------HQLHHL----------RIDNS--------------------
58
+ P----------------------AEKSDSLTSGERDSGILYRSLNSDMDT----------
59
+ ------------------------------PSKRQG-AW---------SYDYGLGGGRFG
60
+ KRS-----------YDDYGIGGGRFG-RDVDHVDLADGVLN--GA
61
+ >gi_121341705_Acal
62
+ MEPQ--------LLSVVILVLCACAASALPTNSRREDLSH---------LVTLLGKLKNI
63
+ ERARQNSEGSA---------QAHAQE----AWEGPRVSSF--------------------
64
+ PE---------------------TEVTADVIPDEVSAAKGYLGQRPATGV----------
65
+ ------------------------------VNKRQG-AW---------SYDYGLGGGRFG
66
+ KRS-----------YGDYGIGGGRFG-RDVDHVDLSDATENEITS
67
+ >gi_223770502_Apom
68
+ MKGF-----AQLLFSFAVALLMIMHVTGSEGSSIGDNSVNEVQSKELLFLAKIVGPLKEI
69
+ ARE---------------------------------------------------------
70
+ -----------------------SEQLASIVERVATD-------GDLTQE----------
71
+ ------------------------------LSKRQG-AW---------DMDYGWGGGRFG
72
+ KRASGTSISQSGKRYDSFGIAG-RFG-RSVENVE---------GH
73
+ >Ensembl_FBtr0078989_Dmel
74
+ MGPRSCTHFATLFMPLWALAFCFLVVLPIPAQTTSLQNAKD--D-------------RRL
75
+ QE--------------------------LESKIGGEIDQPIANL-----VG---------
76
+ PSFSL------FGDRRNQKTMSFGRRVPLISRPIIPIELDLLMDNDDERT----------
77
+ ------------------------------KAKR--------------FDDY--GHMRFG
78
+ KRG-------GDDQFDDYGHM--RFG-R-----------------
79
+ >jgi_242979_Daphnia
80
+ MKLT-----MLATVLAAVLVLGVGRATAAPADSSSTATGR-----------------RLL
81
+ HSPNPTSHSKS--------IDSWLRWLLLRSRIGDKEKTKNGV-----------------
82
+ PSNSF---------QLARSPVELGSSNPKLQAKLPPA---IVQSNDDDET------TGFG
83
+ DEDFADEDVPLVLPEGRQA-----------ASKRQ-------------PDDY--GHMRYG
84
+ -------------DFDDYGHM--RFGRR-----------------
data/data/raw_data/chordate_OX26_QRFP.fa ADDED
@@ -0,0 +1,10 @@
1
+ >Uniprot_QRFP_Hsap
2
+ MVRPYPLIYFLFLPLGACFPLLDRREPTDAMGGLGAGERWADLAMGPRPHSVWGSSRWLRASQPQALLVIARGLQTSGREHAGCRFRFGRQDEGSEATGFLPAAGEKTSGPLGNLAEELNGYSRKKGGFSFRFGRR
3
+ >Ensembl_FUGU4:scaffold_69_Trub
4
+ MTTAFHLGASHLLFFTLLCPIPRSIMPSPHFPSILLPFEDLSELQQHQQDHCLLQQVTRAGSGDQPHVTLLQPKQSRLRRAQRDALATRILTPLTGGPSVSFRERRQGENGGKKNEALTSIAGELQAVSREKGGFGFRFGRKRWTDWRRKSLRQN
5
+ >jgi_84798_Bflo
6
+ MSRILAVLLAVLATTAATANLPSPHRLVRRSAPSEDEVRMQRRANLLALLEDDDNETREPSEAQGAGLSKEEAEALVKYLQEPVGGLRRPAINVYRPDVEEVEREKKTTRLLSWAAEMLRMMSTKGGFQFRFGKREAAEGKER
7
+ >jgi_84799_Bflo
8
+ MSRMLAVLLAVLVTTAATTNPSPHRLARRSAPSEDEVRLQRRANLMALLEDDDNGASEATDTPVPGLSLTEEEADALVKCLVDPVGGLRGPLHTGGGFHRPRSGRGERGDREKKALDLSSLAQSLRTMGSRKAGIILRFGKRDEDEGENTSLAANI
9
+ >jgi_107075_Bflo
10
+ MGVRVMRSRICVIGLLVLMLTQSEAYSFREKSWRTSPYYRQYGGYFRRRDGGDQAPSFTSTGNGEDVSNGLDDDAGIYLSDQAGDDGISPADKRSAMLQQLAQQLKNRPREKGGFTFRFGKRESRRSFGSD
data/data/raw_data/chordate_OX26_QRFP.fa.aligned.fa ADDED
@@ -0,0 +1,25 @@
1
+ >Uniprot_QRFP_Hsap
2
+ M------VRPYPLIYFLFLPLGACF--P----LLDRREPTDAMGGLGAGERWADL-----
3
+ -----AMGPRPHSVWGSSRWLRASQPQALLVIARGLQTSG--REHAGCRFRFGRQDEGSE
4
+ ATGFLP----------------------------AAGEKTSGPLGNLAEELNGYSRKKGG
5
+ FSFRFGRR--------------
6
+ >Ensembl_FUGU4:scaffold_69_Trub
7
+ MTTAFHLGASHLLFFTLLCPIPRSIM-PSPH-FPSILLPFEDLSEL---QQHQQDHCLLQ
8
+ QVTRAGSGDQPHVTLLQPKQSRLRRAQRDALATRILTPLTG--GP---SVSFRERRQG--
9
+ ----------------------------------ENGGKKNEALTSIAGELQAVSREKGG
10
+ FGFRFGRKRWTDWRRKSLRQN-
11
+ >jgi_84798_Bflo
12
+ M------SRILAVLLAVLATTAATANLPSPHRLVRRSAPSEDEVRM---QRRANLLALLE
13
+ DDDNETREPSE------AQGAGLSKEEAEALVKYLQEPVGGLRRP---AINVYRPDVEE-
14
+ ----------------------------------VEREKKTTRLLSWAAEMLRMMSTKGG
15
+ FQFRFGKREAAEGKER------
16
+ >jgi_84799_Bflo
17
+ M------SRMLAVLLAVLVTTAATTN-PSPHRLARRSAPSEDEVRL---QRRANLMALLE
18
+ DDDNGASEATD----TPVPGLSLTEEEADALVKCLVDPVGGLRGPLHTGGGFHRPRSGRG
19
+ ER--------------------------------GDREKKALDLSSLAQSLRTMGSRKAG
20
+ IILRFGKRDEDEGENTSLAANI
21
+ >jgi_107075_Bflo
22
+ MGVR--VMRSRICVIGLLV-----------------------------------------
23
+ --------------------LMLTQSEAYSFREKSWRTSPYYRQY---GGYFRRRDGGDQ
24
+ APSFTSTGNGEDVSNGLDDDAGIYLSDQAGDDGISPADKRSAMLQQLAQQLKNRPREKGG
25
+ FTFRFGKRE----SRRSFGSD-