neurohmmer 0.1.0

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Files changed (133) hide show
  1. checksums.yaml +7 -0
  2. data/.gitignore +35 -0
  3. data/CODE_OF_CONDUCT.md +13 -0
  4. data/Gemfile +4 -0
  5. data/LICENSE +662 -0
  6. data/README.md +136 -0
  7. data/Rakefile +17 -0
  8. data/bin/neurohmmer +69 -0
  9. data/data/hmm/CRH_DH44.fa.hmm +427 -0
  10. data/data/hmm/Chordate_Glucagon_PACAP.fa.hmm +484 -0
  11. data/data/hmm/Chordate_Neurotensin_precursors_neurotensin_like_Ciona.fa.hmm +526 -0
  12. data/data/hmm/Deutrostomian_tachykinin.fa.hmm +367 -0
  13. data/data/hmm/Gastrin_releasing_peptide.fa.hmm +448 -0
  14. data/data/hmm/GnRH.fa.hmm +370 -0
  15. data/data/hmm/Hypocretin_orexin.fa.hmm +451 -0
  16. data/data/hmm/Lophotrochozoan_luqin_arthropod_RYamide.fa.hmm +385 -0
  17. data/data/hmm/NPFF.fa.hmm +430 -0
  18. data/data/hmm/NPS.fa.hmm +790 -0
  19. data/data/hmm/PTH.fa.hmm +502 -0
  20. data/data/hmm/Protostomian_Allatostatin_B.fa.hmm +835 -0
  21. data/data/hmm/Protostomian_CCH_amide.fa.hmm +415 -0
  22. data/data/hmm/Protostomian_Ecdysis_Triggering_Hormone.fa.hmm +433 -0
  23. data/data/hmm/Protostomian_PDF.fa.hmm +265 -0
  24. data/data/hmm/Protostomian_allatostatin_C.fa.hmm +352 -0
  25. data/data/hmm/Protostomian_proctolin.fa.hmm +346 -0
  26. data/data/hmm/Putative_chordate_Opioid.fa.hmm +802 -0
  27. data/data/hmm/SIF.fa.hmm +286 -0
  28. data/data/hmm/TRH.fa.hmm +910 -0
  29. data/data/hmm/allatotropin.fa.hmm +433 -0
  30. data/data/hmm/ambulacrarian_amphioxus_NPS-like.fa.hmm +847 -0
  31. data/data/hmm/avp.fa.hmm +475 -0
  32. data/data/hmm/calcitonin_DH31.fa.hmm +418 -0
  33. data/data/hmm/cholecystokinin_sulfakinin.fa.hmm +433 -0
  34. data/data/hmm/chordate_OX26_QRFP.fa.hmm +475 -0
  35. data/data/hmm/chordate_somatostatin_cortistatin_like.fa.hmm +361 -0
  36. data/data/hmm/f_type_SALMF.fa.hmm +811 -0
  37. data/data/hmm/galanin.fa.hmm +391 -0
  38. data/data/hmm/l_type_SALMF.fa.hmm +523 -0
  39. data/data/hmm/nmu_pyrokinin.fa.hmm +424 -0
  40. data/data/hmm/npy_npf.fa.hmm +301 -0
  41. data/data/hmm/protostomian_CCAP.fa.hmm +415 -0
  42. data/data/hmm/protostomian_allatostatinA_buccalin.fa.hmm +706 -0
  43. data/data/hmm/protostomian_leucokinin.fa.hmm +511 -0
  44. data/data/hmm/protostomian_tackykinin.fa.hmm +760 -0
  45. data/data/hmm/tachykinin.fa.hmm +541 -0
  46. data/data/hmm/vertebrate_ghrelin_motilin.fa.hmm +382 -0
  47. data/data/raw_data/CRH_DH44.fa +44 -0
  48. data/data/raw_data/CRH_DH44.fa.aligned.fa +242 -0
  49. data/data/raw_data/Chordate_Glucagon_PACAP.fa +18 -0
  50. data/data/raw_data/Chordate_Glucagon_PACAP.fa.aligned.fa +72 -0
  51. data/data/raw_data/Chordate_Neurotensin_precursors_neurotensin_like_Ciona.fa +10 -0
  52. data/data/raw_data/Chordate_Neurotensin_precursors_neurotensin_like_Ciona.fa.aligned.fa +25 -0
  53. data/data/raw_data/Deutrostomian_tachykinin.fa +1283 -0
  54. data/data/raw_data/Deutrostomian_tachykinin.fa.aligned.fa +5707 -0
  55. data/data/raw_data/Gastrin_releasing_peptide.fa +12 -0
  56. data/data/raw_data/Gastrin_releasing_peptide.fa.aligned.fa +25 -0
  57. data/data/raw_data/GnRH.fa +22 -0
  58. data/data/raw_data/GnRH.fa.aligned.fa +66 -0
  59. data/data/raw_data/Hypocretin_orexin.fa +14 -0
  60. data/data/raw_data/Hypocretin_orexin.fa.aligned.fa +49 -0
  61. data/data/raw_data/Lophotrochozoan_luqin_arthropod_RYamide.fa +26 -0
  62. data/data/raw_data/Lophotrochozoan_luqin_arthropod_RYamide.fa.aligned.fa +91 -0
  63. data/data/raw_data/NPFF.fa +16 -0
  64. data/data/raw_data/NPFF.fa.aligned.fa +48 -0
  65. data/data/raw_data/NPS.fa +8 -0
  66. data/data/raw_data/NPS.fa.aligned.fa +24 -0
  67. data/data/raw_data/PTH.fa +24 -0
  68. data/data/raw_data/PTH.fa.aligned.fa +144 -0
  69. data/data/raw_data/Protostomian_Allatostatin_B.fa +17 -0
  70. data/data/raw_data/Protostomian_Allatostatin_B.fa.aligned.fa +120 -0
  71. data/data/raw_data/Protostomian_CCH_amide.fa +24 -0
  72. data/data/raw_data/Protostomian_CCH_amide.fa.aligned.fa +72 -0
  73. data/data/raw_data/Protostomian_Ecdysis_Triggering_Hormone.fa +24 -0
  74. data/data/raw_data/Protostomian_Ecdysis_Triggering_Hormone.fa.aligned.fa +84 -0
  75. data/data/raw_data/Protostomian_PDF.fa +16 -0
  76. data/data/raw_data/Protostomian_PDF.fa.aligned.fa +32 -0
  77. data/data/raw_data/Protostomian_allatostatin_C.fa +28 -0
  78. data/data/raw_data/Protostomian_allatostatin_C.fa.aligned.fa +56 -0
  79. data/data/raw_data/Protostomian_proctolin.fa +16 -0
  80. data/data/raw_data/Protostomian_proctolin.fa.aligned.fa +32 -0
  81. data/data/raw_data/Putative_chordate_Opioid.fa +8 -0
  82. data/data/raw_data/Putative_chordate_Opioid.fa.aligned.fa +32 -0
  83. data/data/raw_data/SIF.fa +28 -0
  84. data/data/raw_data/SIF.fa.aligned.fa +70 -0
  85. data/data/raw_data/TRH.fa +10 -0
  86. data/data/raw_data/TRH.fa.aligned.fa +50 -0
  87. data/data/raw_data/allatotropin.fa +31 -0
  88. data/data/raw_data/allatotropin.fa.aligned.fa +90 -0
  89. data/data/raw_data/ambulacrarian_amphioxus_NPS-like.fa +8 -0
  90. data/data/raw_data/ambulacrarian_amphioxus_NPS-like.fa.aligned.fa +24 -0
  91. data/data/raw_data/avp.fa +28 -0
  92. data/data/raw_data/avp.fa.aligned.fa +70 -0
  93. data/data/raw_data/calcitonin_DH31.fa +36 -0
  94. data/data/raw_data/calcitonin_DH31.fa.aligned.fa +126 -0
  95. data/data/raw_data/cholecystokinin_sulfakinin.fa +28 -0
  96. data/data/raw_data/cholecystokinin_sulfakinin.fa.aligned.fa +84 -0
  97. data/data/raw_data/chordate_OX26_QRFP.fa +10 -0
  98. data/data/raw_data/chordate_OX26_QRFP.fa.aligned.fa +25 -0
  99. data/data/raw_data/chordate_somatostatin_cortistatin_like.fa +10 -0
  100. data/data/raw_data/chordate_somatostatin_cortistatin_like.fa.aligned.fa +20 -0
  101. data/data/raw_data/f_type_SALMF.fa +118 -0
  102. data/data/raw_data/f_type_SALMF.fa.aligned.fa +590 -0
  103. data/data/raw_data/galanin.fa +93 -0
  104. data/data/raw_data/galanin.fa.aligned.fa +552 -0
  105. data/data/raw_data/kisspeptin.fa +16 -0
  106. data/data/raw_data/kisspeptin.fa.aligned.fa +0 -0
  107. data/data/raw_data/l_type_SALMF.fa +68 -0
  108. data/data/raw_data/l_type_SALMF.fa.aligned.fa +170 -0
  109. data/data/raw_data/nmu_pyrokinin.fa +18 -0
  110. data/data/raw_data/nmu_pyrokinin.fa.aligned.fa +63 -0
  111. data/data/raw_data/npy_npf.fa +20 -0
  112. data/data/raw_data/npy_npf.fa.aligned.fa +40 -0
  113. data/data/raw_data/protostomian_CCAP.fa +14 -0
  114. data/data/raw_data/protostomian_CCAP.fa.aligned.fa +42 -0
  115. data/data/raw_data/protostomian_allatostatinA_buccalin.fa +100 -0
  116. data/data/raw_data/protostomian_allatostatinA_buccalin.fa.aligned.fa +1350 -0
  117. data/data/raw_data/protostomian_leucokinin.fa +18 -0
  118. data/data/raw_data/protostomian_leucokinin.fa.aligned.fa +63 -0
  119. data/data/raw_data/protostomian_tackykinin.fa +504 -0
  120. data/data/raw_data/protostomian_tackykinin.fa.aligned.fa +2002 -0
  121. data/data/raw_data/tachykinin.fa.aligned.fa +13546 -0
  122. data/data/raw_data/vertebrate_ghrelin_motilin.fa +16 -0
  123. data/data/raw_data/vertebrate_ghrelin_motilin.fa.aligned.fa +32 -0
  124. data/lib/neurohmmer.rb +89 -0
  125. data/lib/neurohmmer/arg_validators.rb +71 -0
  126. data/lib/neurohmmer/hmmer.rb +71 -0
  127. data/lib/neurohmmer/output.rb +50 -0
  128. data/lib/neurohmmer/version.rb +4 -0
  129. data/neurohmmer.gemspec +34 -0
  130. data/spec/neurohmmer_spec.rb +11 -0
  131. data/spec/spec_helper.rb +2 -0
  132. data/template/contents.slim +55 -0
  133. metadata +269 -0
data/data/raw_data/Protostomian_PDF.fa ADDED
@@ -0,0 +1,16 @@
1
+ >Ensembl_FBtr0085024_PDF_Dmel
2
+ MARYTYLVALVLLAICCQWGYCGAMAMPDEERYVRKEYNRDLLDWFNNVGVGQFSPGQVATLCRYPLILENSLGPSVPIRKRNSELINSLLSLPKNMNDAGK
3
+ >gi_45650472_Pmon
4
+ MCRVAMLLVVLAVTAVVVTEAQREPAASKCQAATELAIQILQAVKGAHPGVAVGPHKRNSELINSLLGLPKFMIDAGRR
5
+ >gi_283526164_Psed
6
+ MNSIIVLSLAVLAIFTSSIQSSPLNRAEDLQPVERQIIAEMASKILKVAEDGLVYSKRNAELINSLLGLPKMMNDAGK
7
+ >CO508274_Hypsibius_dujardini_Tardigrada
8
+ MDVKAFLFAVAMSTFLTSSSAIWVFLEPRFDAEFISRNSEMVGQEVYSQFPSGSEGPAQLLSQGYQPVELTRIPIRKRNSEILNTIIGLPNKLRQRG
9
+ >Ensembl_F48B9.4_Cele
10
+ MSSRISVSLLLLAVVATMFFTANVVDATPRSQGNMMRYGNSLPAYAPHVLYRFYNSRQFAPINKRNNAEVVNHILKNFGALDRLGDVGK
11
+ >Ensembl_T07E3.6a_Cele
12
+ MNRFIISMIALLAVFCAVSTASPLLYRAPQYQMYDDVQFVKRSNAELINGLIGMDLGKLSAVGKRSNAELINGLLSMNLNKLSGAGRR
13
+ >jgi_239524_Lgig
14
+ MVALSPEMNSCTKCLLLLVFVGLTVLVKLSESSPLRPYQTQIEEKSRQDIITLAARVIKIAMYGSNQYDVIKRNAGTVDHLLNFPDLSVGK
15
+ >gi_187067819_Skow
16
+ MASYKSMMVIYCVFLLVADIEGFLKVVAKKSGRIQREVAEKRDLLRDKEIEKRPHGERDLRNYGNTKQEVDIPRHMVLGR
data/data/raw_data/Protostomian_PDF.fa.aligned.fa ADDED
@@ -0,0 +1,32 @@
1
+ >Ensembl_FBtr0085024_PDF_Dmel
2
+ MARYTYLV-----ALVLLAICCQWG---YCGAMAMPDEERY----------VRKEY--NR
3
+ DLLD--WFNNVGVGQFSPGQVATLCRYPLILENSLGP----SVPIRKRNSELINSLL---
4
+ -SLP-KNMNDAGK-
5
+ >gi_45650472_Pmon
6
+ MCRVAML-------LVVLAVT----------AVVVTEAQREPA--------ASKCQA-AT
7
+ ELAI------------------------QILQAVKGAHPGVAVGPHKRNSELINSLL---
8
+ -GLP-KFMIDAGRR
9
+ >gi_283526164_Psed
10
+ MNSIIVL------SLAVLAIF--------TSSIQSSPLNRAE-----DLQPVERQI--IA
11
+ EMAS------------------------KILKVAEDGLVY-----SKRNAELINSLL---
12
+ -GLP-KMMNDAGK-
13
+ >CO508274_Hypsibius_dujardini_Tardigrada
14
+ MDVKAFL------FAVAMSTFLT-----SSSAIWVFLEPRF------DAEFISR----NS
15
+ EMVGQEVYSQFPSGSEGPA---------QLLSQGYQPVELTRIPIRKRNSEILNTII---
16
+ -GLP-NKLRQRG--
17
+ >Ensembl_F48B9.4_Cele
18
+ MSSRISV------SLLLLAVVATMF----FTANVVDATPRS-----------------QG
19
+ NMMR--------YGNSLPA------YAPHVLYRFYNSRQFAPIN-KRNNAEVVNHILKNF
20
+ GALD--RLGDVGK-
21
+ >Ensembl_T07E3.6a_Cele
22
+ MNRFIIS------MIALLAVFCAVS----TASPLLYRAPQYQM--YDDVQFVKRS---NA
23
+ ELIN------------------------GLIGMDLG--KLSAVG-KRSNAELINGLL---
24
+ -SMNLNKLSGAGRR
25
+ >jgi_239524_Lgig
26
+ MVALSPEMNSCTKCLLLLVFV--------GLTVLVKLSESSPLRPY-QTQIEEKS---RQ
27
+ DIIT---------------------LAARVIKIAMYGSNQYDV--IKRNAGTVDHLL-NF
28
+ PDLS------VGK-
29
+ >gi_187067819_Skow
30
+ MASYKSM-------MVIYCVFLLVADIEGFLKVVAKKSGR-----------IQREVAEKR
31
+ DLLRDK----------------------EIEKRPHGERDLRNYGNTKQEVDIPRHMV---
32
+ ----------LGR-
data/data/raw_data/Protostomian_allatostatin_C.fa ADDED
@@ -0,0 +1,28 @@
1
+ >gi_161295377_Ctel
2
+ MVPSKSVCAIVVVMSCYVLCGFIVNAVPTQDGGSNLSHGYNEVSEMGLTDTKLAFLEKKLREEIERDLADLLVMEHQHRHNLNFIQEKKRQLEIKKREPVQCLVNIVSCWKRK
3
+ >jgi_181187_Hrob
4
+ MKNVTFLLLAMSATLLLLLASALPPRRRSLISKNYIFPKTHSKRFAKNNDAEDPLYSSYPFEYNNNEPISMDSNKYANSLNKEFPKAPKGKQVFKKAHVPCLFSIISCWK
5
+ >gi_163505903_Lgig
6
+ MKSLPVLTLTLFCICLNEVSSNKILPGEEHRQLVQITEESSNNDRLLKRSTLQDAYESHLAMLMEAEQSLTKQIEELKLRREELSNRKRSHVMCLVNLISCFRKR
7
+ >gi_260628238_Cgig
8
+ MELTQSVFVLKLYAAVVAVLLVAEVHAQPQKFSTEIQQTGDESSTDLNLFKMALREAYNRELEFYEQQEAQIVKQLAALENDRNQIRERKRSHIRCLVNVIACYRKK
9
+ >gi_203663510_Acal
10
+ MSVSVRTWRAVNTCLLLTLLTLWADVLVVRAAVIPVSSPEPMEEASALQLLPGKIGRASLLREMERQLMILQAAEENIVSGLQELEEERRVLSGRKRSHYSSMCMFNVVACYRKRK
11
+ >jgi_290676_Dpul
12
+ MMAKISAVVPVAILLYLAASGAAKSTDREETESTDFGQDIEVLGAVPDDGSVETALLNYLFAKQIVARLRTNANPQDLMRKRSYWKQCAFNAVSCFGK
13
+ >BCM_GLEAN_05428_Tcas
14
+ MAAQLPRYLTKTLFIFLIATLVVANARPNHFGDASQNSISGLKFQVVGEPADGNNLLDSRLKPWELEMLVQRLSEISSQTGGDFAWDKSIRLPEAKRQSRYRQCYFNPISCFRK
15
+ >Ensembl_FBtr0080234_AstC_Dmel
16
+ MMKFVQILLCYGLLLTLFFALSEARPSGAETGPDSDGLDGQDAEDVRGAYGGGYDMPAQAIYPNIPMDRLQMLFAQYRPTSYSAYLRSPTYGNVNELYRLPESKRQVRYRQCYFNPISCFRK
17
+ >Ensembl_FBtr0114455_AstCC_Dmel
18
+ MVVPKRAALLLDRLMVALHHALEQERSEQRIGEFFGDRNILSGKFGDSHNGMEHHQAREDGMYSDDDAGTLLDYDFKDLNQINRATGETRRAGADRSGTSTHSGSPAGSRRIQPSGSGGGRAYWRCYFNAVSCF
19
+ >Ensembl_F33D11.8_Cele
20
+ MVKFFVFLLFFAFLCSFTSAIPLRSLFLRSYDDINQESIARGYFAPQPVDDDNADNRPKRGIDLLKRRVEIIERNRCFFNPITCY
21
+ >Ensembl_M02E1.2_Cele
22
+ MMAQKTLIIAVMLVCSILQPMLALGSLTPSAAFRANMQQRERSPNTLFYMDGASKQYGDEIKDPIYKRFKPCYYSPIQCLIKRK
23
+ >Ensembl_R11.2_Cele
24
+ MRVLTFLLVTLFALANVMQAQRYDRAIYEALLNDLEREFVERELAQHVLEKRELLRQDRQELDRVRRASEKKSYPRNCYFSPIQCLFTRN
25
+ >Ensembl_Y73B6BL.35_Cele
26
+ MKSSSVLSVALIVLVIVQLISASLASVPSSSAVSDGQIDFDALAAKIEMLRPNRYWKRAHNIDTRALNQFKNCYFSPIQCVLMERRRK
27
+ >Ensembl_R08B4.5_Cele
28
+ MSSGKLFQFFIVFLATLLLADAIPMVSSRDEDDQIIQKRLSNDALIRLLMRNRGTQTQLGLKRGLVKKAEVERRSIDEDFSNCFLSPVQCMLPSSRK
data/data/raw_data/Protostomian_allatostatin_C.fa.aligned.fa ADDED
@@ -0,0 +1,56 @@
1
+ >gi_161295377_Ctel
2
+ MVPSKS--------VCAIVVVMSCYVLCGFIVNAVPTQDGGSN-------------LSHG
3
+ YNEVSEMGLTDTKL--AFLEKKLREEIERDLADLLVME---------------HQHRHNL
4
+ NFIQEKKR-------------QLEIKKREPV----------QCLVNIVSCW----KRK
5
+ >jgi_181187_Hrob
6
+ MKN-----------VTFLLLAMSATLLLLLASALPPRRRSLIS-----------------
7
+ ------------------KNYIFPKTHSKRFAKNNDAEDPLYSSYPF------EYNNNEP
8
+ ISMDSNKYANSLNKEFPKAPKGKQVFKKAHV----------PCLFSIISCW------K
9
+ >gi_163505903_Lgig
10
+ MKS-------------LPVLTLTLFCICLNEVSSNKILPGEEHRQ----------LVQIT
11
+ EESSNNDRLL--------KRSTLQDAYESHLAMLMEAE---------------QSLTKQI
12
+ EELKLRRE-------------ELSNRKRSHV----------MCLVNLISCF----RKR
13
+ >gi_260628238_Cgig
14
+ MELT----------QSVFVLKLYAAVVAVLLVAEVHAQPQKFSTE----------IQQTG
15
+ DESSTDLNL---------FKMALREAYNRELEFYEQQE---------------AQIVKQL
16
+ AALENDRN-------------QIRERKRSHI----------RCLVNVIACY----RKK
17
+ >gi_203663510_Acal
18
+ MSVSVRTWRAVNTCLLLTLLTLWADVLVVRAAVIPVSSPEPM------------------
19
+ -EEASALQLLPGKI----GRASLLREMERQLMILQAAE---------------ENIVSGL
20
+ QELEEERR-------------VLSGRKRSHY--------SSMCMFNVVACYR---KRK
21
+ >jgi_290676_Dpul
22
+ MMA-------------KISAVVPVAILLYLAASGAAKSTDREETESTDFGQD----IEVL
23
+ GAVPDDGSVETALL----NYLFAKQIVAR-------------------------------
24
+ --LRTNANP------------QDLMRKRSY---------WKQCAFNAVSCF-----GK
25
+ >BCM_GLEAN_05428_Tcas
26
+ MAAQ---------LPRYLTKTLFIFLIATLVVANARPNHFGDASQNSISGLK----FQVV
27
+ GEPADGNNLLDSRL----KPWELEMLVQR-------------------------------
28
+ --LSEISSQTGGDFAWDKSIRLPEAKRQSR---------YRQCYFNPISCF-----RK
29
+ >Ensembl_FBtr0080234_AstC_Dmel
30
+ MMK-------------FVQILLCYGLLLTLFFALSEARPSGAETGPDSDGLDGQDAEDVR
31
+ GAYGGGYDMPAQAIYPNIPMDRLQMLFAQ------------------------YRPTSYS
32
+ AYLRSPTYGNVNELY-----RLPESKRQVR---------YRQCYFNPISCF-----RK
33
+ >Ensembl_FBtr0114455_AstCC_Dmel
34
+ MVVPKR------------AALLLDRLMVALHHALEQERS-----------------EQRI
35
+ GEFFGDRNILSGKF--GDSHNGMEHHQAREDGMYSDDDAGTLLDYDFKDLNQINRATGET
36
+ RRAGADRSGTSTHSG------SPAGSRRIQPSGSGGGRAYWRCYFNAVSCF-------
37
+ >Ensembl_F33D11.8_Cele
38
+ MVK-------------FFVFLLFFAFLCSFTSAIP-------------------------
39
+ ----------------------LRSLFLRSYDDINQES--------------IARGYFAP
40
+ QPVDDDNADNRPKRG------IDLLKRRVEIIE------RNRCFFNPITCY-------
41
+ >Ensembl_M02E1.2_Cele
42
+ MMAQ----------KTLIIAVMLVCSILQPMLALGSLTP---------------------
43
+ ------------------SAAFRANMQQR------------------------ERSPNTL
44
+ FYMDGASKQYGDEI-------KDPIYKR-----------FKPCYYSPIQCLI---KRK
45
+ >Ensembl_R11.2_Cele
46
+ MRV------------------LTFLLVTLFALA------------------------NVM
47
+ QAQRYDRAIYEALL-----NDLEREFVERELA---------------------QHVLEKR
48
+ ELLRQDRQE------------LDRVRRASEKKSY-----PRNCYFSPIQCLF---TRN
49
+ >Ensembl_Y73B6BL.35_Cele
50
+ MKS-----------SSVLSVALIVLVIVQLISASLASVPSS----------------SAV
51
+ SDGQIDFDALAAKI-----------EMLR-------------------------------
52
+ ---------------------PNRYWKRAHNIDTRALNQFKNCYFSPIQCVLMERRRK
53
+ >Ensembl_R08B4.5_Cele
54
+ MSS-----------GKLFQFFIVFLATLLLADAIP-----------------------MV
55
+ SSRDEDDQIIQKRL----SNDALIRLLMR------------------------NRGTQTQ
56
+ LGLKRGLVK------------KAEVERRSIDED------FSNCFLSPVQCMLP-SSRK
data/data/raw_data/Protostomian_proctolin.fa ADDED
@@ -0,0 +1,16 @@
1
+ >Ensembl_FBtr0079562_Dmel
2
+ MGVPRSHGTGIGCGSGHRWLLVWMTVLLLVVPPHLVDGRYLPTRSHGDDLDKLRELMLQILELSNEDPQQQQQQQQQQQHPQLRLHNEATGGSSSSSNINNPRVSNGNSNAAWLQKLSAMGALDELGGDGARFGPNYGRY
3
+ >BCM_GLEAN_15137_Tcas
4
+ MFDRKLVFALVFVVFATLAVEGRYLPTRSNGDRIEKLRELLKDLFENEVEKEEYQADAPPRWHPESKLFYKREAPAH
5
+ >gi_300039604_Apis
6
+ MAGKFSALFLVGFVAAVVVAPYMMAEARYLPTRGNDDRLTRLKELLTDLLDSGAQPNLEMERPYVDVNGDFSRLRPREYNIPEKSIMELFNPTVPHHQRPRS
7
+ >jgi_305680_Dpul
8
+ MLKSTSLKALVTLLVVSFVLMASSPRAADARYLMTRGKDPRFDRLYDIITKLLQNGGGDLEYQIKSQLDSGP
9
+ >jgi_21488_Ctel
10
+ MEIRLTLVLALLVAALGVVANALSIPSDALKDNQMDVADKDGDQSRRATWLETRDLEDDFKELVYLTIEELVNEGRMDPRVLSKEENEVKEKRGRWQGFCFKRTRSGRFLPYICWKGDRK
11
+ >gi_223843442_Apom
12
+ MDMCRLSAILVILYGTLCAVTNAMSIPASQLKDSGVELDSSENTALDEGRRASWLETRDLENDFKDLVFLTLQELAQEGRIDPRVIVEENSLDTKEKRGRWQGFCFRRTKTGRFLPYICWKGDRK
13
+ >gi_163376585_Lgig
14
+ MRSSTILSLLVVLLLAAPTFCLPPDQGSEIDDLDKRPKYMDTREELSVLKDMVYIVLQELAEDGKINPELFTIHDQKAVVKRMKYMGICMRRTKYNAVVPYPCLRSGR
15
+ >gi_121437918_Acal
16
+ MELQACNIFALFVVVVTLSVASSLPASRTDDVLQEASGLALNKRPKYMDTRRDLDVFKDLVLISIQELVDENRLNPALLPEEDAPKPVEKRMRYMGICMKKQYNNFIPFPCLRSGR
data/data/raw_data/Protostomian_proctolin.fa.aligned.fa ADDED
@@ -0,0 +1,32 @@
1
+ >Ensembl_FBtr0079562_Dmel
2
+ MGVPRSHGTGIGCGSGHRWLLVWMTVLL-LVVPPHLVD----------------------
3
+ --GRYLPTRSHGDDLDKLRELMLQILELSNEDPQQQQQQQQQQQHPQLRLHNEATGGSSS
4
+ SSNINNPRVSNGNSNAAWLQKLSAMGALDELGGDGARFGP----NYGRY----
5
+ >BCM_GLEAN_15137_Tcas
6
+ M--------------FDRKLVFALVF---VVFATLAVE----------------------
7
+ --GRYLPTRSNGDRIEKLRELLKDLFENEVEKEEYQADAP-----P--------------
8
+ ------------------------------------RWHPESKLFYKREAPAH
9
+ >gi_300039604_Apis
10
+ M-----------AGKFSALFLVGFVAAV-VVAPYMMAE----------------------
11
+ --ARYLPTRGNDDRLTRLKELLTDLLDSGAQ--------------PNLEMERPYVDVNGD
12
+ FSR-----LRPREYN---IPEKSIME----------LFNPTVP-HHQR--PRS
13
+ >jgi_305680_Dpul
14
+ M--------------LKSTSLKALVTLL-VVSFVLMASSPRAAD----------------
15
+ --ARYLMTRGKDPRFDRLYDIITKLLQNGGGDLEYQIKSQLDSG-P--------------
16
+ -----------------------------------------------------
17
+ >jgi_21488_Ctel
18
+ MEI------------RLTLVLALLVAALGVVANALSIPSDALKDN--QMDVADKDG-DQS
19
+ RRATWLETR---DLEDDFKELVYLTIEELVNEGRMD---------PRVLSKEEN-EVKEK
20
+ RGRWQGFCFKRTRSG---------------------RFLPYICWKGDRK----
21
+ >gi_223843442_Apom
22
+ MDM---------C--RLSAILVILYGTLCAVTNAMSIPASQLKDSGVELDSSENTALDEG
23
+ RRASWLETR---DLENDFKDLVFLTLQELAQEGRID---------PRVIVEENSLDTKEK
24
+ RGRWQGFCFRRTKTG---------------------RFLPYICWKGDRK----
25
+ >gi_163376585_Lgig
26
+ M--------------RSSTILSLLVVLL-LAAPTFCLPPDQGSEI----D-------DLD
27
+ KRPKYMDTR---EELSVLKDMVYIVLQELAEDGKIN---------PELFTIHDQ-KAVVK
28
+ RMKYMGICMRRTKYN---------------------AVVPYPCLRSGR-----
29
+ >gi_121437918_Acal
30
+ MEL------------QACNIFALFVVVV-TLSVASSLPASRTDDV-----LQEASGLALN
31
+ KRPKYMDTR---RDLDVFKDLVLISIQELVDENRLN---------PALLPEEDAPKPVEK
32
+ RMRYMGICMKK-QYN---------------------NFIPFPCLRSGR-----
data/data/raw_data/Putative_chordate_Opioid.fa ADDED
@@ -0,0 +1,8 @@
1
+ >PENK_Hsap
2
+ MARFLTLCTWLLLLGPGLLATVRAECSQDCATCSYRLVRPADINFLACVMECEGKLPSLKIWETCKELLQLSKPELPQDGTSTLRENSKPEESHLLAKRYGGFMKRYGGFMKKMDELYPMEPEEEANGSEILAKRYGGFMKKDAEEDDSLANSSDLLKELLETGDNRERSHHQDGSDNEEEVSKRYGGFMRGLKRSPQLEDEAKELQKRYGGFMRRVGRPEWWMDYQKRYGGFLKRFAEALPSDEEGESYSKEVPEMEKRYGGFMRF
3
+ >PDYN_Hsap
4
+ MAWQGLVLAACLLMFPSTTADCLSRCSLCAVKTQDGPKPINPLICSLQCQAALLPSEEWERCQSFLSFFTPSTLGLNDKEDLGSKSVGEGPYSELAKLSGSFLKELEKSKFLPSISTKENTLSKSLEEKLRGLSDGFREGAESELMRDAQLNDGAMETGTLYLAEEDPKEQVKRYGGFLRKYPKRSSEVAGEGDGDSMGHEDLYKRYGGFLRRIRPKLKWDNQKRYGGFLRRQFKVVTRSQEDPNAYSGELFDA
5
+ >Ghost_KH.C10.27.v1.A.SL11_Cint
6
+ MKLVKKFSILAAIVVCYFGCIADAVPVDTVEKQLLQREGTGNPENFLDWTNQLNSTDDAEDNPFLAENRNSDEENNDYSPGQAESIQSDKRFQSLFKRYPGFQGLFKRHNPHLPDLFKRYNSMGLFKRSPGMLGLFKRGLLGLFKRSDARLQGLFKRDSATQGSFKRSSEAQALPKRYPNFQGLFKRLSEATEYPEDDSSNDDTKQRGNLHSLFKRDTSAHYLEDRGESIPFLFRRS
7
+ >ENsembl_SNAP00000092003_Csav
8
+ MYSIQACLLLSILFNPDSIIVKAVPAIDAIERELISKQINKEEVNFIDFTKALNSTALDDMSDDELLWMLGQMIQPIQESTSVNDEEQLSGIDDIEEIDKEQGTNDELNLGKDGDQNQAYFSPQMKRHFGPLFKRMRGLFKRAPNAPLKRGLSGLFRRDPNTPGEPDARKVSDGGRTDTRGMQGLFKREPAFPVDADNSYDGKSHQVKLDRRRMPGLFKRGLQNLFKRAGGANSLFKREDGIENEVGARNRKSDLQEIFKRGIQGLFKRMTTDDLNAENNLGEAPHYRRSFHSLFKRDLSLSWNKSSGENKNKVHSLEKRGENIPFIFKRN
data/data/raw_data/Putative_chordate_Opioid.fa.aligned.fa ADDED
@@ -0,0 +1,32 @@
1
+ >PENK_Hsap
2
+ MA---RFLTLCTWLLLLGPGLLATVRAECSQDCATCSYRLVR-PADINFLACVMECEGKL
3
+ PSLKIWETCKELLQLSKPELPQDGTSTLRENSKPEESHL---------------------
4
+ -----------------------------------LAKR-----YGGFMKRY--------
5
+ -----GGFMKKMDE--LYPMEPEEEANGSEILAKRYGGF---MKKDAEEDDSLANSSD--
6
+ -------------LLKELLETGDNRERSHHQDGSDNEEEVSKRYGGFMRGL-KRSPQLED
7
+ E---------AKELQKRY---GGFMRRVG----RPEW--WMDYQKRYGGFL-----KR-F
8
+ AEALPSDEEGESYSK-------EVPEMEKRYGG----FMRF
9
+ >PDYN_Hsap
10
+ MAW--QGLVLAACLLMF-----PSTTADCLSRCSLCAVKTQDGPKPINPLICSLQCQAAL
11
+ LPSEEWERCQSFLSFFTP-------STLGLNDKED---L---------------------
12
+ -----------------------------------GSKSVGEGPYSELAKLS--------
13
+ -----GSFLKELEKSKFLPSISTKENTLSKSLEEKLRGLSDGFREGAESE--LMRDAQ--
14
+ -------------LNDGAMETGTLYLA------EEDPKEQVKRYGGFLRKYPKRSSEVAG
15
+ EG--DGDSMGHEDLYKRY---GGFLRRI-----RPKL--KWDNQKRYGGFL-----RRQF
16
+ KVVTRSQEDPNAYSG-------ELFDA--------------
17
+ >Ghost_KH.C10.27.v1.A.SL11_Cint
18
+ MKLVKKFSILAAIVV-------------CYFGCIADAVP-VD------------TVEKQL
19
+ LQREGTGNPENFLDWTNQL-----NST---DDAEDNPFLA--------------------
20
+ ------------ENRNSDEEN--NDYSPGQAESIQSDKR-----FQSLFKRY--------
21
+ -----PGFQGLFKR--HNPHLPDLFK------RYNSMGL---FKRSPG------------
22
+ --------------MLGLFKRGLLGL--------------FKRSDARLQGLFKRDSATQG
23
+ S---FKRSSEAQALPKRYPNFQGLFKRLSEATEYPEDDSSNDDTKQRGNL----------
24
+ HSLFKRDTS--------------AHYLEDRGESIPFLFRRS
25
+ >ENsembl_SNAP00000092003_Csav
26
+ MYSI-QACLLLSILF-------------NPDSIIVKAVPAID------------AIEREL
27
+ ISKQINKEEVNFIDFTKAL-----NST-ALDDMSDDELLWMLGQMIQPIQESTSVNDEEQ
28
+ LSGIDDIEEIDKEQGTNDELNLGKDGDQNQAYFSPQMKR----HFGPLFKRMRGLFKRAP
29
+ NAPLKRGLSGLFRRDPNTPGEPDARK-VSDGGRTDTRGMQGLFKREPA----FPVDADNS
30
+ YDGKSHQVKLDRRRMPGLFKRGLQNL--------------FKRAGG-ANSLFKREDGIEN
31
+ EVGARNRKSDLQEIFKRG--IQGLFKRM-----------TTDDLNAENNLGEAPHYRRSF
32
+ HSLFKRDLS-LSWNKSSGENKNKVHSLEKRGENIPFIFKRN
data/data/raw_data/SIF.fa ADDED
@@ -0,0 +1,28 @@
1
+ >jgi_176362_Lgig
2
+ MVAKGTVGILIVLFNTICANIDLNYNQVPVANPLLFGRRGINPDMSSLFFGKRSGNSDHRDLRKMKDTCKAVLSSCKILFSDYEDDTVRNKVQDGFGRFK
3
+ >gi_207118044_Hasi
4
+ MNCKIPCLLLVLTFCIMSFTHAQANPRNLNRLVGQQPLLFGRRGVNPNMNSLFFGKRAPSMNNMDVRTMCNAVLSACAAWQADMTDN
5
+ >gi_260928914_Cgig
6
+ MKIYSIISIVIALVAVIVLKTSASKENSRGLTRLVGQQPLLFGRRGMNPNMNSLFFGKRAVDRPTLDDIIVEKCSRIMAACREYAHERMGEDDI
7
+ >gi_117945496_Ipar
8
+ MSGRRNLLVPASLVLILSAILFFGHETQQVEAAYSPTRGQQNTHSFGRRGLNPNVNSLFFGKRGGSEQEALSNTEMGRKCLAAMSMCNMYFETNTINES
9
+ >jgi_175046_Lgig
10
+ MNRCTACLVLVLVVILTVNAVQSARGNGRQRPQLFGRHGVRPGMNGLVFGKRNSESQEMQQDCWSSLNLCLKVILNNGDMEEV
11
+ >gi_161198869_Ctel
12
+ MDCRLVTFVALFCSMLLVQQVLSDPLEDHLPETSGLFFGKRSSHPNMNNLLFGRRSYAQMAANYQVEEARQGICKSMKETCGKWGFDVEN
13
+ >gi_301553931_Apom
14
+ MQTKIVISACILAAMLVFQCACADPLRDQLPDTTGLFFGKRGSHPNMNNLLFGRRSYPIEDLEDARKVCRAVQATCARWGLDEN
15
+ >gi_326351257_Ecom
16
+ MDIKIVILACSLTVLLLSRQASTEPLEDQLPEDTGLFFGKRTSHNPNMNNLVFGRRSYQPKVQRRMNAEDAKRICLNVRLTCAKWFAEEDQMRNLKH
17
+ >BCM_GLEAN_08645_Tcas
18
+ MQLALAKVFSVCIVVIILTSWIEMTEATYRKPPFNGSIFGKRGATIGKLLTFVIFLSKIISSEYDSASKALSAMCEIASEACQTWFPSQEK
19
+ >gi_118778560_Agam
20
+ MAAFKVLGSLIVVLLVVLALSGHAEAGYRKPPFNGSIFGKRNGNSVDYEGNAKVLSTMCEIAAEACQSWFTQEQK
21
+ >Ensembl_FBtr0091490_IFa_Dmel
22
+ MALRFTLTLLLVTILVAAILLGSSEAAYRKPPFNGSIFGKRNSLGKSKIRIPLKPPPISPSRLRQRQNERRLRGGHGGVSHVVSPERQQIGPRPATPPPRTDLEPTTNTPATGGQMLCLLVRLNVEMPDVKKVMYKIYNVSRAYRYIELMPYIYIKYSINLQH
23
+ >jgi_260818_Dpul
24
+ MRSSFIVVMVCVVVVLTFWGQVAEATRKLPFNGSIFGKRSNQGTDKLESPSNLQLLCDAAMNACSDWLPIGSK
25
+ >Ensembl_F37A8.4_Cele
26
+ MWYIALLLAVIATSVTAQKADDEPIVFLVRVPIDEMDDDSSLLESYYHPRDILSKRAIPFNGGMYGKRSTMPFSGGMYGKRSGQIFAQRRAAIPFSGGMYGKRSLVPQSYSNNENQIKRGAMPFSGGMYGR
27
+ >MPI_GENEPREDICTION_JIGTRA00000189416_Ppac
28
+ MTFSGGMYGKRAAPSQFSGGMYGKRSETNYKRGPVMFSGGMYGKRAAPSQFSGGMYGKRAVPMTFSGGMYGKRASSPMMFGGGMYGKRAPMPYSGGMYGR
data/data/raw_data/SIF.fa.aligned.fa ADDED
@@ -0,0 +1,70 @@
1
+ >jgi_176362_Lgig
2
+ MVAKGTVGILIVLFNTI---------CANIDLNYNQVPVANPL---------LFGRRGIN
3
+ -PDMSSLFFGKRSGNSDHR-----------------------------------------
4
+ ---------------------------DLRKMKD-TCKAVLSSCKILFSD---YEDDTVR
5
+ NKVQDGFG-----RF----------------K
6
+ >gi_207118044_Hasi
7
+ MNCKIPCLLLVLTFCIMSFTH-----AQANPRNLNRLVGQQPL---------LFGRRGVN
8
+ -PNMNSLFFGKRA-----------------------------------------------
9
+ ------PSM------------------NNMDVRT-MCNAVLSACAAWQAD---MTDN---
10
+ --------------------------------
11
+ >gi_260928914_Cgig
12
+ MKIYSIISIVIALVAVIVLKTSA---SKENSRGLTRLVGQQPL---------LFGRRGMN
13
+ -PNMNSLFFGKRAVD---------RP----------------------------------
14
+ ---------------------------TLDDIIVEKCSRIMAACREYAHER-MGEDD---
15
+ -------------------------------I
16
+ >gi_117945496_Ipar
17
+ MSGRRNLLVPASLVLILSAILFFGHETQQVEAAYSPTRGQQNT-----H---SFGRRGLN
18
+ -PNVNSLFFGKRGGS---------------------------------------------
19
+ ----EQEAL------------------SNTEMGR-KCLAAMSMCNMYFETNTINES----
20
+ --------------------------------
21
+ >jgi_175046_Lgig
22
+ MNRCTACLVLVLVVILTVNA------VQSARGNGRQRPQ-------------LFGRHGVR
23
+ -PGMNGLVFGKRNS----------------------------------------------
24
+ ---------------------------ESQEMQQ-DCWSSLNLCLKVILN---NGD--ME
25
+ EV------------------------------
26
+ >gi_161198869_Ctel
27
+ MDCRLVTFVALFCSMLLVQ-------QVLSDPLEDHLPETSGL---------FFGKRSSH
28
+ -PNMNNLLFGRRSY----------------------------------------------
29
+ ------AQM---AANY-----------QVEEARQGICKSMKETCGKWGFD---VEN----
30
+ --------------------------------
31
+ >gi_301553931_Apom
32
+ MQTKIVISACILAAMLVFQ-------CACADPLRDQLPDTTGL---------FFGKRGSH
33
+ -PNMNNLLFGRRSYP---------------------------------------------
34
+ ----IE---------------------DLEDARK-VCRAVQATCARWGLD----EN----
35
+ --------------------------------
36
+ >gi_326351257_Ecom
37
+ MDIKIVILACSLTVLLLSR-------QASTEPLEDQLPEDTGL---------FFGKRTSH
38
+ NPNMNNLVFGRRSYQ---------------------------------------------
39
+ --PKVQRRM------------------NAEDAKR-ICLNVRLTCAKWFAE----EDQ-MR
40
+ NLKH----------------------------
41
+ >BCM_GLEAN_08645_Tcas
42
+ MQLALAKVFSVCIVVIILTSW-----IEMTEATYRKPP----------------------
43
+ ---FNGSIFGKRGAT--------------------------------IGKLLTFVIFLSK
44
+ IISSEYD--------------------SASKALSAMCEIASEACQTWFPS---QEK----
45
+ --------------------------------
46
+ >gi_118778560_Agam
47
+ MAAFKVLGSLIVVLLVVLAL------SGHAEAGYRKPP----------------------
48
+ ---FNGSIFGKRNGN---------------------------------------------
49
+ --SVDYE--------------------GNAKVLSTMCEIAAEACQSWFTQ---EQK----
50
+ --------------------------------
51
+ >Ensembl_FBtr0091490_IFa_Dmel
52
+ MALRFTLTLLLVTILVAAIL------LGSSEAAYRKPP----------------------
53
+ ---FNGSIFGKRNSLGKSKIRIPLKPPPISPSRLRQRQNERRLRGGHGG--------VSH
54
+ VVSPERQQI-------GPRPATPPPRTDLEPTTNTPATGGQMLCLLVRLN---VEMPDVK
55
+ KVMYKIYNVSRAYRYIELMPYIYIKYSINLQH
56
+ >jgi_260818_Dpul
57
+ MRSSFIVVMVCVVVVLTF--------WGQVAEATRKLP----------------------
58
+ ---FNGSIFGKRSNQGTDKL----------------------------------------
59
+ ---------------------------ESPSNLQLLCDAAMNACSDWLPI---GSK----
60
+ --------------------------------
61
+ >Ensembl_F37A8.4_Cele
62
+ MWYIALLLAVIATSVTAQKADDEP-IVFLVRVPIDEMDDDSSLLESYYHPRDILSKRAIP
63
+ ---FNGGMYGKRSTM------------PFS--------------GGMYGKR------SGQ
64
+ IFAQRRAAIPFSGGMYGKRSLVPQSYSNNENQIK--------------------------
65
+ -------------R--GAMPFSGGMYG----R
66
+ >MPI_GENEPREDICTION_JIGTRA00000189416_Ppac
67
+ MTFS----------------------------------------------GGMYGKRAAP
68
+ -SQFSGGMYGKRSETNYKR-----GPVMFS--------------GGMYGKRAAPSQFSGG
69
+ MYGKRAVPMTFSGGMYGKRASSPMMFGGGMYGKR--------------------------
70
+ ----------------APMPYSGGMYG----R
data/data/raw_data/TRH.fa ADDED
@@ -0,0 +1,10 @@
1
+ >Uniprot_TRH_Hsap
2
+ MPGPWLLLALALTLNLTGVPGGRAQPEAAQQEAVTAAEHPGLDDFLRQVERLLFLRENIQRLQGDQGEHSASQIFQSDWLSKRQHPGKREEEEEEGVEEEEEEEGGAVGPHKRQHPGRREDEASWSVDVTQHKRQHPGRRSPWLAYAVPKRQHPGRRLADPKAQRSWEEEEEEEEREEDLMPEKRQHPGKRALGGPCGPQGAYGQAGLLLGLLDDLSRSQGAEEKRQHPGRRAAWVREPLEE
3
+ >Ensembl_ENSGALT00000013835_Ggal
4
+ MPSIQLPVLLLCLTLSGVCLNGRQFPPELSENMGRSSLDDILQRSGSHMLQSVLKKVEKKEEMNKELNMPLPQWLSKRQHPGKRYISDPEKRQHPGKRDVEEKASFGDIQKRQHLGKTEVEGYLVNYLELKKRQHPGRRSLWDQSTDISSSQLTYLNELSKRQHPGRRYLMYKHQHPSKRGWNDELDLSDQNWEKHQQFGNRDRDSDSPDYTGPCDLQQSAICNKDSLLLDLAEKFSKEGVEEKHQHPGRRSAWENETEE
5
+ >Ensembl_ENSDART00000018054_Drer
6
+ MRAVCVFVLACVAVSGAPGVRGQDGPAEEELFQRAEDLLLRSILTQMEEQNSENDQPEWMEKRQHPGKRQHPGKREEDLEPEVEMERWRRQHPGKRAPLDLGMLEDPTALSELSKRQHPGKRYLMLLHKRQHPGRRELQEADGHSAELEKRQHPGKRRCEGWADAGCGLLELLDTSGAPEKRQHPGRRAELEDELPGLE
7
+ >jgi_102993_Bflo
8
+ MAAHLCILLLLTAIRLAHGAEPAHGAEPAHGAEPAHGAEPAHGAEPGPLAHGAEPAHGAEPGPLAHGAEPAHGAEPGPLAPWPDTEAPRERDSGTTREPWERALLEDMARVLGALALYDADMEVMNQEETSPPFTHGGAELGQLLTDSFLLQSTDKRQSPGKRQSPGKRQSPGKRQSPGKRQSPGKRQSPGKRGDDEITLPMGLRFEPLFSSALSESSTDKRQSAGKRQSPGKRQSPGKRQSPGKRQSPGKRTFPFPGTPQMETHDATDARANLLTLLDLVEQKRQSPGKRQHPGKRADWLRPSPEEPWLLYPPEKPDVLLPFISSWSPESGIEDGGMASDGARDDKRQSPGKRQSPGKRQSPGKRQSPGKRDDAETGLPQGLPFDPLFYSAFGESSTDKRQSPGKRQSPGKRQSPGKRQSPGKRQSPGKRQSPGKRGGELSAAAAGQGAYAPAGSRKDWTEKPAIYTTFPAGF
9
+ >gi109402869_Spur
10
+ MKGTVGLYMWACILGYVTWGGAALPTILGKELVLSENDGPEIADWVQGKEIPLRNQYWGDVAEEEEEDELGMLSPDSEKRQYPGGKRQYPGGKRQYPGGKRQYPGGKRQFPAGKRQFVGGELIPSPELRQWPGGXRQWPGGXRQWPGGKRQYPGGKRQYPGGKRQWPEIKRQYPGGKRSEDDQDLLAMEIRQYPGG
data/data/raw_data/TRH.fa.aligned.fa ADDED
@@ -0,0 +1,50 @@
1
+ >Uniprot_TRH_Hsap
2
+ MPGPWLLLALALTLNLT-GVPGGRAQPE--------------------------------
3
+ ---------------------------AAQQEAVTAAEHPG---LDDFLRQVERLLFLRE
4
+ NIQRLQGDQGEH-------SASQIFQSDWL-----SKRQHPGKREEEEEEGVEEEEEEEG
5
+ GAVGPHKRQHPGRREDEAS-----------------------------------------
6
+ ---------------------WSVD-----------------VTQH-----KRQHPGRRS
7
+ PWLAYAV--------P--------------------------------KRQHPGRRL---
8
+ ----ADPKAQRSWEEEEEEEEREE---------------DLMPEKRQHPGKRA-------
9
+ LGGPCGPQGAYGQA--GLLLGLLDDLSRSQGAEEKRQHPGRRAA----------------
10
+ ----WVREPLE-------E
11
+ >Ensembl_ENSGALT00000013835_Ggal
12
+ MPSIQLPVLL-LCLTLS-GV-CLNGRQF--------------------------------
13
+ ---------------------------PPE-----LSENMGRSSLDDILQRSGSHM-LQS
14
+ VLKKVEKKEEMN-------KELNMPLPQWL-----SKRQHPGKRYISD------------
15
+ ----PEKRQHPGKRDVEEKA------------------------SFGDIQ----------
16
+ ------KRQHLGK--------TEVEGY-----------LVNYLELK-----KRQHPGRRS
17
+ LWDQST----------DISSSQLTYLNELS------------------KRQHPGRRY--L
18
+ MYKHQHP-SKRGWNDELDLS-------------------DQNWEKHQQFGNRDRDSDSPD
19
+ YTGPCDLQQSAICNKDSLLLDLAEKFSKE-GVEEKHQHPGRRSA----------------
20
+ ----WENETEE--------
21
+ >Ensembl_ENSDART00000018054_Drer
22
+ MRAVCVFVL--ACVAVS-GAPGVRGQDG--------------------------------
23
+ ---------------------------PAE---------------EELFQRAEDLL-LRS
24
+ ILTQMEEQNSEN-------DQ-----PEWM-----EKRQHPG------------------
25
+ ------KRQHPGKREEDLE-----------------------------------------
26
+ ---------------------PEVE-----------------MERW-----RRQHPGKRA
27
+ PLDLGMLED------P-------TALSELS------------------KRQHPGKRYLML
28
+ LHKRQHP-GRRELQEADGHS--------------------AELEKRQHPGKRR-------
29
+ ----CEGWADAGCG-------LLELLDTS-GAPEKRQHPGRRAE----------------
30
+ ----LEDELPGL------E
31
+ >jgi_102993_Bflo
32
+ MAAHLCILLLLTAIRLAHGAEPAHGAEPAHGAEPAHGAEPAHGAEPGPLAHGAEPAHGAE
33
+ PGPLAHGAEPAHGAEPGPLAPWPDTEAPRERDSGTTREPWERALLEDMARVLGALA-LYD
34
+ ADMEVMNQEETSPPFTHGGAELGQLLTDSFLLQSTDKRQSPGKRQSPGKRQSPGKRQSPG
35
+ KRQSPGKRQSPGKRGDDEITLPMGLRFEPLFSSALSESSTDKRQSAGKRQSPGKRQSPGK
36
+ RQSP-GKRQSPGKRTFPFPGTPQMETHDATDARANLLTLLDLVEQKRQSPGKRQHPGKRA
37
+ DWLRPSPEEPWLLYPPEKPDVLLPFISSWSPESGIEDGGMASDGARDDKRQSPGKRQ--S
38
+ PGKRQSP-GKRQSPGKRDDAETGLPQGLPFDPLFYSAFGESSTDKRQSPGKRQ----SPG
39
+ KRQSPGKRQSPGKR----------------QSPGKRQSPGKRGGELSAAAAGQGAYAPAG
40
+ SRKDWTEKPAIYTTFPAGF
41
+ >gi109402869_Spur
42
+ MKGTVGLYMW-ACIL---GYVTWGGAAL--------------------------------
43
+ ---------------PTIL--------GKE---LVLSENDG-PEIADWVQGKEIPL-RNQ
44
+ YWGDVAEEEEE--------DELGMLSPDS------EKRQYPG-----------GKRQYPG
45
+ G-----KRQYPG----------------------------------GKRQYPG-----GK
46
+ RQFPAGKRQFVGGELI-----PSPE-----------------LRQW--PGGXRQWPGGXR
47
+ QW-------------P---------------------GG---------KRQYPG------
48
+ -GKRQYPGGKRQWPEI----------------------------KRQYPGGKRSED----
49
+ --------------------------DQDLLAMEIRQYPG--------------------
50
+ ------------------G
data/data/raw_data/allatotropin.fa ADDED
@@ -0,0 +1,31 @@
1
+ >gi_223023872_Mgal
2
+ MRLCGLLALISVSIVIVDSSPALSRHKRGFLAGVHDRMGHGFGKRTDPILSSYVDDVDKDDLMTVEDLVRHIMQSEVLADAIVRKFIDINDDGSVSYQELLRKLMR
3
+ >gi_148318561_Lsta
4
+ MSRTSLTLQVGVVLLAICLFDITYADERIHRQKRGFRANSASRVAHGYGKRGYLSSNENLPTLSLDQLESSTGLMEEISDGSLMTVNEFSQLLTSHPNLARALVKKFVDINGDDVISTDELFRPILKK
5
+ >gi_121313125_Acal
6
+ MLSAPSIAHTGVALLVLMCLCPFSQSTEASLSRAKRGFRLNSASRVAHGYGKRGYASSSGAVPYPELARDVLDNLRAEEEEKELEWSIMSVDELASLLQSHPKLARALVKKFVDINGDNLVTAEELFRPPTRK
7
+ >gi_163522278_Lgig
8
+ MKLTLVLVTVTLTITILANAYPQSPSLSHHRSKRGFKANSASRVAHGYGKRGFPSWKNYFQDGGSDVLSVEDMAELVAENPSLAKALLRKFVDTDNDGIISTTELLGTKQMLK
9
+ >jgi_226681_Ctel
10
+ MKVSICFIVVALVVCIEVMTSHAANLSRSKRGFRMGAADRFSHGFGKRGGDFNSLIDGESDMVMSDEDLTEIIRADARLAQTFVKRFIDTDGDGFVSRQELFEA
11
+ >gi_223784927_Apom
12
+ MKSILCLSVAALMLVAVSGVSSKLTVTGNSRRVARGFRLGAADRFSHGFGKRTDDHLPEVIPGAESDVLLSNAEFAELLRSDEKLANLIVQDFVDKNGDGFITRNELMGYRK
13
+ >gi_112983783_AT_Bmor
14
+ MNLTMQLEVIVAVCLVLAEGAPDVRLVRTKQQRPTRGFKNVEMMTARGFGRRDRPHPRAELYGLDNFWVMSEPSPEREVQEVDEKTFESIPLDWFVNEMLNNPDFARFVVEKFIDLNQDGMLSSEELRNV
15
+ >gi_240248407_Rpro
16
+ MMRWSSLLVLVALASIINCIKAGSPSSALYSSAARASGRTRTIRGFKNVQLSTARGFGKRTYPDSQLQPDLIPADWMAEELSSNPELARFIIRRFIDVDQDGLVSPVELLRNTVCQEPN
17
+ >BCM_Contig45963_Apis
18
+ MAVNNNIMVRLLVIEITFLILAVVNSYPAFEDSEFKHKHRDKGRTIRGFKNMDLSTARGFGKRTDHYMNLMPLDLFVDNKEDSFNQNIPMEVSLEKILKNKYKHFIEKLIDVNHDGYISGEELLLSIDGES
19
+ >jgi_255977_Dpul
20
+ MKGKGAFLMVLAGWGLIGLMILTTAVEAAPHPADYTSSSVNNQRDFRSRRGFKTVGLATARGFGKRAPSLSNFNSFQDAAEQMMQQQEENPNSDPDVNGKV
21
+ >jgi_50560525_Homalodisca_vitripennis
22
+ MRVYTLLLWLVVLLMSVTANSVPVYLRDKPRSIRGFKNHALSTARGFGKRSDSELSSSETSQFTDRDSFPADWFASEVQNNGELARLVVHKFIDTNQDGELSADELLRPLYGPPTTTYK
23
+ >sp|P21786|ALLT_MANSE Allatotropin OS=Manduca sexta PE=1 SV=2
24
+ MNLTMQLAVIVAVCLCLAEGAPDVRLTRTKQQRPTRGFKNVEMMTARGFGKRDRPHPRAERDVDHQAPSARPNRGTPTFKSPTVGIARDFGKRASQYGNEEEIRVTRGTFKPNSNILIARGYGKRTQLPQIDGVYGLDNFWEMLETSPEREVQEVDEKTLESIPLDWFVNEMLNNPDFARSVVRKFIDLNQDGMLSSEELLRNF
25
+ >sp|Q70XC3|ALLT_SPOFR Allatotropin OS=Spodoptera frugiperda PE=2 SV=2
26
+ MNISMHLAVAVAAAACLCVCAAAPENRLARTKQQRPTRGFKNVEMMTARGFGKRDRPHTRAEHQDSYDSHARRKFNPKSNLMVAYDFGKRSGNDDVTDEVYGLDNFWEMLEATPEREGQENDEKTLESIPLDWFVNEMLNNPDFARSVVRKFIDLNQHSFGLVRERDAEQSRFRAICGPQVH
27
+ >tr|G6DGJ8|G6DGJ8_DANPL Allatotropin OS=Danaus plexippus GN=KGM_16925 PE=4 SV=1
28
+ MVATYYGKRTDNDYLREEEEVVRVIRGSFKPNAKILIARGYGKRQEDPKGEEEIRVTRGTFNPHSNVLIARGYGKRESRDEEHEPNNFWENLEASQDGDNGNDEKTVDR
29
+ >tr|W5RWF8|W5RWF8_CULPI Allatotropin (Fragment) OS=Culex pipiens PE=4 SV=1
30
+ LCSVLLCCHTSSAGPARQLASLAARASKIPRSIRAPFRNSEMMTARGFGKRRAPIGANVGGGSASGTMVKHVADETPWGYDKHEAGKLIEELVADGVDSLQMGGAGEQESFPLDWFASEMTTNPALARTILQRFVDTNRDGILTTSELISSPMGGGGAAASDSNDLF
31
+
data/data/raw_data/allatotropin.fa.aligned.fa ADDED
@@ -0,0 +1,90 @@
1
+ >gi_223023872_Mgal
2
+ MRLCGLLALISVSIVIV-------------------------DSSPALSRHKRG-FLAGV
3
+ HDRMGHGFGKR-------------------------------------------------
4
+ -------TDPILSSYV----------------------DDVDKDDL--------------
5
+ -----------MTVEDLVRHIMQSEVLADAIVRKFIDINDD----GSVSYQEL----L--
6
+ RKLMR-------
7
+ >gi_148318561_Lsta
8
+ MSRTSLTLQVGVVLLAICLFDITYA-------------------DERIHRQKRG-FRANS
9
+ ASRVAHGYGKR-------------------------------------------------
10
+ -------GYLSSNENL----------------------PTLSLDQLESST--------GL
11
+ MEEISD--GSLMTVNEFSQLLTSHPNLARALVKKFVDINGD----DVISTDEL----F--
12
+ RPILKK------
13
+ >gi_121313125_Acal
14
+ MLSAPSIAHTGVALLVLMCLCPFSQ-----------------STEASLSRAKRG-FRLNS
15
+ ASRVAHGYGKR-------------------------------------------------
16
+ -------GYASSSGAVPY--------------------PELARDVLDNLR--------AE
17
+ EEEKELE-WSIMSVDELASLLQSHPKLARALVKKFVDINGD----NLVTAEEL----F--
18
+ RPPTRK------
19
+ >gi_163522278_Lgig
20
+ -MKLTLV-LVTVTLTITILANAYPQ-----------------SPSLSHHRSKRG-FKANS
21
+ ASRVAHGYGKR-------------------------------------------------
22
+ -------GFPSWKNYF----------------------QDGGSDVL--------------
23
+ ------------SVEDMAELVAENPSLAKALLRKFVDTDND----GIISTTEL----LGT
24
+ KQMLK-------
25
+ >jgi_226681_Ctel
26
+ -MKVSIC-FIVVAL-VVCIEVMTSH-------------------AANLSRSKRG-FRMGA
27
+ ADRFSHGFGKR-------------------------------------------------
28
+ -------GGD-FNSLI----------------------DG-ESDMV--------------
29
+ -----------MSDEDLTEIIRADARLAQTFVKRFIDTDGD----GFVSRQEL----FEA
30
+ ------------
31
+ >gi_223784927_Apom
32
+ -MKSILC-LSVAALMLVAVSGVSSK---------L-------TVTGNSRRVARG-FRLGA
33
+ ADRFSHGFGKR-------------------------------------------------
34
+ -------TDDHLPEVI----------------------PGAESDVL--------------
35
+ -----------LSNAEFAELLRSDEKLANLIVQDFVDKNGD----GFITRNEL----MGY
36
+ RK----------
37
+ >gi_112983783_AT_Bmor
38
+ -MNLTMQLEVIVAV---CLVLAEGA----PDVRLV-------RTKQQ--RPTRG-FK-NV
39
+ EMMTARGFGRRDRPHPRAE-----------------------------------------
40
+ ---------------------------------------LYGLDNFWVMSEPSPEREVQE
41
+ VDEKT---FESIPLDWFVNEMLNNPDFARFVVEKFIDLNQD----GMLSSEEL-------
42
+ RNV---------
43
+ >gi_240248407_Rpro
44
+ -MMRWSSLLVLVALASIINCIKAGS----PSSALYSSAA---RASGR-TRTIRG-FK-NV
45
+ QLSTARGFGKRTYPDSQLQ-----------------------------------------
46
+ ------------------------------------------------------------
47
+ --------PDLIPADWMAEELSSNPELARFIIRRFIDVDQD----GLVSPVEL----L--
48
+ RNTVCQEPN---
49
+ >BCM_Contig45963_Apis
50
+ -MAVNNNIMVRLLVIEITFLILAVV----NSYPAFEDSEFKHKHRDK-GRTIRG-FK-NM
51
+ DLSTARGFGKRT------------------------------------------------
52
+ -------------------------------------------DHYMNLMPLD-----LF
53
+ VDNKEDSFNQNIPMEVSLEKILKNK--YKHFIEKLIDVNHD----GYISGEEL----L--
54
+ LSIDGES-----
55
+ >jgi_255977_Dpul
56
+ MKGKGAFLMVLAGWGLIGLMILTTAVEAAPHPADYTSSS---VNNQRDFRSRRG-FK-TV
57
+ GLATARGFGKRAP-----------------------------------------------
58
+ -------SLSNFNSFQD-------------------------------------------
59
+ ------------AAEQMMQQQEENP-------------NSDPDVNGKV------------
60
+ ------------
61
+ >jgi_50560525_Homalodisca_vitripennis
62
+ -MRVYTLLLWLVVL-----LMSVTA----NSVPVY--------LRDK-PRSIRG-FK-NH
63
+ ALSTARGFGKRS------------------------------------------------
64
+ -------------------------------------------DSELSSSETS-----QF
65
+ TD------RDSFPADWFASEVQNNGELARLVVHKFIDTNQD----GELSADEL----L--
66
+ RPLYGPPTTTYK
67
+ >sp|P21786|ALLT_MANSE Allatotropin OS=Manduca sexta PE=1 SV=2
68
+ -MNLTMQLAVIVAV---CLCLAEGA----PDVRLT-------RTKQQ--RPTRG-FK-NV
69
+ EMMTARGFGKRDRPHPRAERDVDHQAPSARPNRGTPTFKSPTVGIARDFGKRASQYGNEE
70
+ EIRVTRGTFKPNSNIL------IARGYGKRTQLPQI-DGVYGLDNFWEMLETSPEREVQE
71
+ VDEKT---LESIPLDWFVNEMLNNPDFARSVVRKFIDLNQD----GMLSSEEL----L--
72
+ RNF---------
73
+ >sp|Q70XC3|ALLT_SPOFR Allatotropin OS=Spodoptera frugiperda PE=2 SV=2
74
+ -MNISMHLAVAVAA-AACLCVCAAA----PENRLA-------RTKQQ--RPTRG-FK-NV
75
+ EMMTARGFGKRDRPHTRAE----HQ----------------------------DSYDSH-
76
+ ----ARRKFNPKSNLM------VAYDFGKRSGNDDVTDEVYGLDNFWEMLEATPEREGQE
77
+ NDEKT---LESIPLDWFVNEMLNNPDFARSVVRKFIDLNQHS--FGLVRERDAEQSRF--
78
+ RAICGPQVH---
79
+ >tr|G6DGJ8|G6DGJ8_DANPL Allatotropin OS=Danaus plexippus GN=KGM_16925 PE=4 SV=1
80
+ ----------MVA------TYYGKR----TDNDYL-------REEEEVVRVIRGSFKPNA
81
+ KILIARGYGKRQE-DPKGE----EE-----------------------------------
82
+ -IRVTRGTFNPHSNVL------IARGYGKRESR----DEEHEPNNFWENLEASQDGD-NG
83
+ NDEKT---VDR-------------------------------------------------
84
+ ------------
85
+ >tr|W5RWF8|W5RWF8_CULPI Allatotropin (Fragment) OS=Culex pipiens PE=4 SV=1
86
+ -------------LCSVLLCCHTSS--AGPARQLASLA----ARASKIPRSIRAPFR-NS
87
+ EMMTARGFGKRRAP----------------------------------------------
88
+ -IGANVGGGSASGTMVKHVADETPWGYDKHEAGKLI--EELVADGVDSLQMGG-AGE---
89
+ --------QESFPLDWFASEMTTNPALARTILQRFVDTNRD----GILTTSELISSPMGG
90
+ GGAAASDSNDLF