neurohmmer 0.1.0

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  1. checksums.yaml +7 -0
  2. data/.gitignore +35 -0
  3. data/CODE_OF_CONDUCT.md +13 -0
  4. data/Gemfile +4 -0
  5. data/LICENSE +662 -0
  6. data/README.md +136 -0
  7. data/Rakefile +17 -0
  8. data/bin/neurohmmer +69 -0
  9. data/data/hmm/CRH_DH44.fa.hmm +427 -0
  10. data/data/hmm/Chordate_Glucagon_PACAP.fa.hmm +484 -0
  11. data/data/hmm/Chordate_Neurotensin_precursors_neurotensin_like_Ciona.fa.hmm +526 -0
  12. data/data/hmm/Deutrostomian_tachykinin.fa.hmm +367 -0
  13. data/data/hmm/Gastrin_releasing_peptide.fa.hmm +448 -0
  14. data/data/hmm/GnRH.fa.hmm +370 -0
  15. data/data/hmm/Hypocretin_orexin.fa.hmm +451 -0
  16. data/data/hmm/Lophotrochozoan_luqin_arthropod_RYamide.fa.hmm +385 -0
  17. data/data/hmm/NPFF.fa.hmm +430 -0
  18. data/data/hmm/NPS.fa.hmm +790 -0
  19. data/data/hmm/PTH.fa.hmm +502 -0
  20. data/data/hmm/Protostomian_Allatostatin_B.fa.hmm +835 -0
  21. data/data/hmm/Protostomian_CCH_amide.fa.hmm +415 -0
  22. data/data/hmm/Protostomian_Ecdysis_Triggering_Hormone.fa.hmm +433 -0
  23. data/data/hmm/Protostomian_PDF.fa.hmm +265 -0
  24. data/data/hmm/Protostomian_allatostatin_C.fa.hmm +352 -0
  25. data/data/hmm/Protostomian_proctolin.fa.hmm +346 -0
  26. data/data/hmm/Putative_chordate_Opioid.fa.hmm +802 -0
  27. data/data/hmm/SIF.fa.hmm +286 -0
  28. data/data/hmm/TRH.fa.hmm +910 -0
  29. data/data/hmm/allatotropin.fa.hmm +433 -0
  30. data/data/hmm/ambulacrarian_amphioxus_NPS-like.fa.hmm +847 -0
  31. data/data/hmm/avp.fa.hmm +475 -0
  32. data/data/hmm/calcitonin_DH31.fa.hmm +418 -0
  33. data/data/hmm/cholecystokinin_sulfakinin.fa.hmm +433 -0
  34. data/data/hmm/chordate_OX26_QRFP.fa.hmm +475 -0
  35. data/data/hmm/chordate_somatostatin_cortistatin_like.fa.hmm +361 -0
  36. data/data/hmm/f_type_SALMF.fa.hmm +811 -0
  37. data/data/hmm/galanin.fa.hmm +391 -0
  38. data/data/hmm/l_type_SALMF.fa.hmm +523 -0
  39. data/data/hmm/nmu_pyrokinin.fa.hmm +424 -0
  40. data/data/hmm/npy_npf.fa.hmm +301 -0
  41. data/data/hmm/protostomian_CCAP.fa.hmm +415 -0
  42. data/data/hmm/protostomian_allatostatinA_buccalin.fa.hmm +706 -0
  43. data/data/hmm/protostomian_leucokinin.fa.hmm +511 -0
  44. data/data/hmm/protostomian_tackykinin.fa.hmm +760 -0
  45. data/data/hmm/tachykinin.fa.hmm +541 -0
  46. data/data/hmm/vertebrate_ghrelin_motilin.fa.hmm +382 -0
  47. data/data/raw_data/CRH_DH44.fa +44 -0
  48. data/data/raw_data/CRH_DH44.fa.aligned.fa +242 -0
  49. data/data/raw_data/Chordate_Glucagon_PACAP.fa +18 -0
  50. data/data/raw_data/Chordate_Glucagon_PACAP.fa.aligned.fa +72 -0
  51. data/data/raw_data/Chordate_Neurotensin_precursors_neurotensin_like_Ciona.fa +10 -0
  52. data/data/raw_data/Chordate_Neurotensin_precursors_neurotensin_like_Ciona.fa.aligned.fa +25 -0
  53. data/data/raw_data/Deutrostomian_tachykinin.fa +1283 -0
  54. data/data/raw_data/Deutrostomian_tachykinin.fa.aligned.fa +5707 -0
  55. data/data/raw_data/Gastrin_releasing_peptide.fa +12 -0
  56. data/data/raw_data/Gastrin_releasing_peptide.fa.aligned.fa +25 -0
  57. data/data/raw_data/GnRH.fa +22 -0
  58. data/data/raw_data/GnRH.fa.aligned.fa +66 -0
  59. data/data/raw_data/Hypocretin_orexin.fa +14 -0
  60. data/data/raw_data/Hypocretin_orexin.fa.aligned.fa +49 -0
  61. data/data/raw_data/Lophotrochozoan_luqin_arthropod_RYamide.fa +26 -0
  62. data/data/raw_data/Lophotrochozoan_luqin_arthropod_RYamide.fa.aligned.fa +91 -0
  63. data/data/raw_data/NPFF.fa +16 -0
  64. data/data/raw_data/NPFF.fa.aligned.fa +48 -0
  65. data/data/raw_data/NPS.fa +8 -0
  66. data/data/raw_data/NPS.fa.aligned.fa +24 -0
  67. data/data/raw_data/PTH.fa +24 -0
  68. data/data/raw_data/PTH.fa.aligned.fa +144 -0
  69. data/data/raw_data/Protostomian_Allatostatin_B.fa +17 -0
  70. data/data/raw_data/Protostomian_Allatostatin_B.fa.aligned.fa +120 -0
  71. data/data/raw_data/Protostomian_CCH_amide.fa +24 -0
  72. data/data/raw_data/Protostomian_CCH_amide.fa.aligned.fa +72 -0
  73. data/data/raw_data/Protostomian_Ecdysis_Triggering_Hormone.fa +24 -0
  74. data/data/raw_data/Protostomian_Ecdysis_Triggering_Hormone.fa.aligned.fa +84 -0
  75. data/data/raw_data/Protostomian_PDF.fa +16 -0
  76. data/data/raw_data/Protostomian_PDF.fa.aligned.fa +32 -0
  77. data/data/raw_data/Protostomian_allatostatin_C.fa +28 -0
  78. data/data/raw_data/Protostomian_allatostatin_C.fa.aligned.fa +56 -0
  79. data/data/raw_data/Protostomian_proctolin.fa +16 -0
  80. data/data/raw_data/Protostomian_proctolin.fa.aligned.fa +32 -0
  81. data/data/raw_data/Putative_chordate_Opioid.fa +8 -0
  82. data/data/raw_data/Putative_chordate_Opioid.fa.aligned.fa +32 -0
  83. data/data/raw_data/SIF.fa +28 -0
  84. data/data/raw_data/SIF.fa.aligned.fa +70 -0
  85. data/data/raw_data/TRH.fa +10 -0
  86. data/data/raw_data/TRH.fa.aligned.fa +50 -0
  87. data/data/raw_data/allatotropin.fa +31 -0
  88. data/data/raw_data/allatotropin.fa.aligned.fa +90 -0
  89. data/data/raw_data/ambulacrarian_amphioxus_NPS-like.fa +8 -0
  90. data/data/raw_data/ambulacrarian_amphioxus_NPS-like.fa.aligned.fa +24 -0
  91. data/data/raw_data/avp.fa +28 -0
  92. data/data/raw_data/avp.fa.aligned.fa +70 -0
  93. data/data/raw_data/calcitonin_DH31.fa +36 -0
  94. data/data/raw_data/calcitonin_DH31.fa.aligned.fa +126 -0
  95. data/data/raw_data/cholecystokinin_sulfakinin.fa +28 -0
  96. data/data/raw_data/cholecystokinin_sulfakinin.fa.aligned.fa +84 -0
  97. data/data/raw_data/chordate_OX26_QRFP.fa +10 -0
  98. data/data/raw_data/chordate_OX26_QRFP.fa.aligned.fa +25 -0
  99. data/data/raw_data/chordate_somatostatin_cortistatin_like.fa +10 -0
  100. data/data/raw_data/chordate_somatostatin_cortistatin_like.fa.aligned.fa +20 -0
  101. data/data/raw_data/f_type_SALMF.fa +118 -0
  102. data/data/raw_data/f_type_SALMF.fa.aligned.fa +590 -0
  103. data/data/raw_data/galanin.fa +93 -0
  104. data/data/raw_data/galanin.fa.aligned.fa +552 -0
  105. data/data/raw_data/kisspeptin.fa +16 -0
  106. data/data/raw_data/kisspeptin.fa.aligned.fa +0 -0
  107. data/data/raw_data/l_type_SALMF.fa +68 -0
  108. data/data/raw_data/l_type_SALMF.fa.aligned.fa +170 -0
  109. data/data/raw_data/nmu_pyrokinin.fa +18 -0
  110. data/data/raw_data/nmu_pyrokinin.fa.aligned.fa +63 -0
  111. data/data/raw_data/npy_npf.fa +20 -0
  112. data/data/raw_data/npy_npf.fa.aligned.fa +40 -0
  113. data/data/raw_data/protostomian_CCAP.fa +14 -0
  114. data/data/raw_data/protostomian_CCAP.fa.aligned.fa +42 -0
  115. data/data/raw_data/protostomian_allatostatinA_buccalin.fa +100 -0
  116. data/data/raw_data/protostomian_allatostatinA_buccalin.fa.aligned.fa +1350 -0
  117. data/data/raw_data/protostomian_leucokinin.fa +18 -0
  118. data/data/raw_data/protostomian_leucokinin.fa.aligned.fa +63 -0
  119. data/data/raw_data/protostomian_tackykinin.fa +504 -0
  120. data/data/raw_data/protostomian_tackykinin.fa.aligned.fa +2002 -0
  121. data/data/raw_data/tachykinin.fa.aligned.fa +13546 -0
  122. data/data/raw_data/vertebrate_ghrelin_motilin.fa +16 -0
  123. data/data/raw_data/vertebrate_ghrelin_motilin.fa.aligned.fa +32 -0
  124. data/lib/neurohmmer.rb +89 -0
  125. data/lib/neurohmmer/arg_validators.rb +71 -0
  126. data/lib/neurohmmer/hmmer.rb +71 -0
  127. data/lib/neurohmmer/output.rb +50 -0
  128. data/lib/neurohmmer/version.rb +4 -0
  129. data/neurohmmer.gemspec +34 -0
  130. data/spec/neurohmmer_spec.rb +11 -0
  131. data/spec/spec_helper.rb +2 -0
  132. data/template/contents.slim +55 -0
  133. metadata +269 -0
data/data/raw_data/PTH.fa.aligned.fa ADDED
@@ -0,0 +1,144 @@
1
+ >Uniprot_PTHY_Hsap
2
+ MI---PAKDMAKVMIV-MLAICFL------------------------------------
3
+ ------------------------------------------------------------
4
+ --------------------------TKSDGKSV--------------------------
5
+ --------------------KKRSVS----------------------------------
6
+ ------------------------------------------------------------
7
+ --EIQLMHNL-----------------------------------------------GKH
8
+ LNSMERVEWLRKKLQDV---HNFVALGAP-------------------------------
9
+ ------LAPRDAGSQRPR------------KKEDN----VLVESHEK--------SLGEA
10
+ DKADV----------NVLTKAKSQ------------------------------------
11
+ ------------------------------------------------------------
12
+ ------------------
13
+ >Uniprot_PTHLH_Hsap
14
+ M-----QRRLVQQWSVAVFLLSYA------------------------------------
15
+ ------------------------------------------------------------
16
+ --------------------------VPSCGRSVEG------------------------
17
+ ----------------LSRRLKRAVS----------------------------------
18
+ ------------------------------------------------------------
19
+ --EHQLLHDK-----------------------------------------------GKS
20
+ IQDLRRRFFLHHLIAEI---HTAEIRATS-------------------------------
21
+ ---EVSPNSKPSPNTKNH---PVRF-----GSDDE-GRYLTQETNKV--------ETYKE
22
+ QPLK-----------TPGKKKKGKPGKRKE------------------------------
23
+ ------------------QEKKKRRTRS-AWLDSGVTGSGLEGDHLSDTSTTS-------
24
+ ------------LELDSR
25
+ >Ensembl_ENSDART00000049154_Drer
26
+ MR-MLCCRRVLQQWVFALFLLCSP------------------------------------
27
+ ------------------------------------------------------------
28
+ --------------------------VPHHGRPVDA------------------------
29
+ ----------------LSSRMKRSVT----------------------------------
30
+ ------------------------------------------------------------
31
+ --HAQLMHDK-----------------------------------------------GRT
32
+ LQDFKRRMWLQELLHEV---HTAEIREAQ-QPRGGVSISSGAGGGVGAGVSITLPAGVGV
33
+ STGAGTAHPKPAGGTKNL---PIGF-----GLEDEEGTNLPQETHKS--------QNYKD
34
+ NMMK-----------GIRRKKKSRTGKRRE------------------------------
35
+ ------------------GEKRKRRARSLQEFSSGV--------HLQPYSC---------
36
+ ------------------
37
+ >Ensembl_ENSDART00000125151_Drer
38
+ ---------MLRHWGFAVFLLTIP------------------------------------
39
+ ------------------------------------------------------------
40
+ --------------------------IPIQSRATNA------------------------
41
+ ----------------PSSRQRRSVG----------------------------------
42
+ ------------------------------------------------------------
43
+ --HAQMMHDR-----------------------------------------------SRS
44
+ LHDRKRRMWLQDLLEQV---HTAQVWDSPNQSEGSVQTLSW-------------------
45
+ ------PRPKHTGSTKNI---PLGYQMESIGTRDD----LPQETSKS--------LTYEE
46
+ QPLKA----------AMKRKSKMCLGRWRE------------------------------
47
+ ------------------RDRRRDRACA---FQMQM--------HMRE------------
48
+ ------------------
49
+ >gi_190336776_Drer
50
+ M-------LLIRCLEKAMLIIVLW-------------SLCSF------------------
51
+ ------------------------------------------------------------
52
+ --------------------------LFLEGLPI--------------------------
53
+ --------------------SKRSIS----------------------------------
54
+ ------------------------------------------------------------
55
+ --EVQLMHNV-----------------------------------------------REH
56
+ KEMLDRQDWLQLKLNNI-------------------------------------------
57
+ ---------------------------------------IIPSVNDS--------QKERK
58
+ GKTNGP---------SVKRLRKGEGATWSF------------------------------
59
+ ------------------------------------------------------------
60
+ -----------------Y
61
+ >gi_47086134_Drer
62
+ MV-SINGNLLKRVIFVTVFILLFS------------------------------------
63
+ ------------------------------------------------------------
64
+ --------------------------TNAESRPL--------------------------
65
+ -------------------RSKRAVN----------------------------------
66
+ ------------------------------------------------------------
67
+ --EVQLMHNL-----------------------------------------------GVH
68
+ KHVELRQDWLQMKLRGI---HTASVKNTD-------------------------------
69
+ ---------------------------------------IIPELKEL--------YPGEA
70
+ EEIM--------------------------------------------------------
71
+ -----------------------------AVLEKLMNPS---------------------
72
+ ------------------
73
+ >Uniprot_PTH2_TIP39_HUMAN
74
+ ME-TRQVSRSPRVRLLLLLLLLLVVP----------------------------------
75
+ --------------------------------------------------------WGV-
76
+ ---RTA--SGVALPPVGV--LS----LRPPGRA---------------------------
77
+ ------------WADPATPRPRRSLA----------------------------------
78
+ ------------------------------------------------------------
79
+ LADDAAFRER-----------------------------------------------ARL
80
+ LAALERRHWLNSYMHKL---LVLDAP----------------------------------
81
+ ------------------------------------------------------------
82
+ ------------------------------------------------------------
83
+ ------------------------------------------------------------
84
+ ------------------
85
+ >Ensembl_ENSDART00000033691_Drer
86
+ MA----LSLPPRPALLFLVLMSVT------------------------------------
87
+ --------------------------LMASAFPQPQLRPLQSNLPAIGQEDSKGEQWEVV
88
+ Y-------PSISLRDWSIQMLT----APDFGAAKTGREQLVADDWLPLSQSQMEEELV-K
89
+ GWTGD-------WPSRVGHQQKRNIV----------------------------------
90
+ ------------------------------------------------------------
91
+ VADDAAFREK-----------------------------------------------SKL
92
+ LTAMERQKWLNSYMQKL---LVVNSK----------------------------------
93
+ ------------------------------------------------------------
94
+ ------------------------------------------------------------
95
+ ------------------------------------------------------------
96
+ ------------------
97
+ >Ghost_ORF_0_KH.C4.592.v1.A.ND1-1_Cint
98
+ M-------KITETMIAFVVIFCVT------------------------------------
99
+ ------------------------------------------------------------
100
+ --------------------------SSCFGKSISK-----------VSSNDLNEKAN--
101
+ ----------------GHSIVKRQSN----------------------------------
102
+ ------------------------------------------------------------
103
+ -ADLNLQNKK-----------------------------------------------TRH
104
+ MNELIRQYYISSILNEI---KGKRDQRQP-------------------------------
105
+ -----LTADEKATACRHA----VQYCRVGQVEEDNGATYLVDQKRDIENGYPDMDNTEQN
106
+ NSVPNEPCLSVSAIAKLLTNSRGNSANQRT------------------------------
107
+ ------------------IDTSQNGHTDGETFDMYTNGQK---------DLASHLFQFFQ
108
+ DQYDLT-----------Q
109
+ >jgi_130114_Bflo
110
+ MPRLHHLYLAANVLLVAMVILTKV------------------------------------
111
+ ------------------------------------------------------------
112
+ --------------------------TSSAGLPTAN------------------------
113
+ ----------------QKPLTRRSIT----------------------------------
114
+ ------------------------------------------------------------
115
+ --DVTMTEER-----------------------------------------------TRD
116
+ MISRARQAWLTALVDEILLPEGANSKRSA------IDTMAD-------------------
117
+ ---HRLAHDTQTAWRRHL----LRY----LVTADP-SISFPQRPSKRQI----TDRTMTE
118
+ ERSR--------------------------------------------------------
119
+ ----------------DLVDRARQAWIS-SLVDEIVEASGTSKRQITDVDVTSDHSKAFT
120
+ DRERTAWLHRLLNAVQGQ
121
+ >jgi_69477_Bflo
122
+ MAAYTTCSLAGAVAAAALALVLVA--GQTAGA-----SALRLQQQAGREN----------
123
+ -----NGSPNFDVLYQPR-----------DPATRDDLRRLYGVLRQI-------------
124
+ --------------------LS----PAQHGGPFAS------------------------
125
+ ----------------GSKVRRTGLT----------------------------------
126
+ ------------------------------------------------------------
127
+ --DVTLLNER-----------------------------------------------HGD
128
+ LNERARVAWLRFLLGGID-PDASEALASE-------------------------------
129
+ -------------------------------EED--------------------------
130
+ ------------------------------------------------------------
131
+ ------------------------------------------------------------
132
+ ------------------
133
+ >jgi_129571_Bflo
134
+ M-----TPLMVMMTMFFTGVLATT-PAHYSNQDMKDFAVVKFHTARGRDNTTSLIRRLFD
135
+ AAADMNGEGNAEKRQAERLIGAHLGETMDSSDRREHLSKL---LADITGESISANCWQTS
136
+ RVWRNARQSGSS------ELISEKPWTPPRGESTSADCWQISRVWRNAKRSDSSEHISEK
137
+ PWTPEQERDLSKLLADITGMEKRQAERLVGAHLGETMDSSTGESISANCWQTSRVWRNAR
138
+ RRGSSEHISEKPWTPPTGESISANCWQTSRVWKNGKQSDSSELISEKPWTPGRRESLSEL
139
+ LADITGMEKRQAERLVGAHLEETMDSADRREHLGQLLSALTGGMRKRQAEVVVGSAQGGT
140
+ LESLQRERFLSELLSTI---EGEKGKRQA-------ERLVG-------------------
141
+ ---AHLGETMDSSGRRDHLSQLLSHITGGIGKRQA-ELLVGAELGDA------VDASERR
142
+ ERLD-----------ALLSSITGHLGKRQAGMVEGTGRGDAMGTGERRGRLSGLMSSITD
143
+ GVGKRQAEVLVGAELGDAVDAEERRERLSALLSSITGGVGK---RLAEVTVGAHRGTAAD
144
+ DKKHRQMINALVAKIT-G
data/data/raw_data/Protostomian_Allatostatin_B.fa ADDED
@@ -0,0 +1,17 @@
1
+
2
+ >AltB_DB915757_Idiosepius_paradoxus
3
+ SESKSLKPLSVIKAENLKSWAKRSTTNGKVLNEIRQAVARGVFPAAVGPIDKSGDKYMSFLQHWLKNNGYPATMANLWARNTGFKSRVTREINNNDDDLPDKKDRLDTWNSMNTWGKRSPNTWDSMAAWGKRNGDTWDSMSAWGKRNGDTWDSMSAWGKRNGDTWDSMSAWGKRNGDTWDSMSAWGKRNGDTWDSMSAWGKRNGDTWDSMSAWGKRNADNAGDKRDWDSLQAWGKRNIAP
4
+ >jgi_197880_Ctel
5
+ MASCRLLLTVITLVICSLVVLADDPETEEQAQDLVPHDMDQDLMDKRKWGSNSMRVWGKRDGDDEMEMDGGAEKRKWGGNNNMRVWGKRKWGANSMRVWGKRSELPEEEKRKWGGSNTMRTWGKRADDNEEDELAKRKWGSNSMRVWGKRADDNKRKWGSNSMRVWGKRADDDMDESKRGWKNNNMRVWGKRADDEIDEDKRKWGSNSMRVWGKRSADDDAELAAAVPHAIVKRSLDSEEFTDDMEKRRWGGNDMRVWGKRRSRADGPKRSWKTNVMRVWGKRGWADNNMRVWGKRADEGAEKRAWVGDKSLSWGKRSDNEVIRNLLAEQVMMISIISPTKYLRDVAICVGGVLGGFSRDPLSE
6
+ >jgi_231501_Lgig
7
+ MDLKTILCLIIYSLLLQISHAEEQLANDIELSNSLNPVDKRAWKSSYLNTWGKRWNPRYNLRGYQRMPIWAKRWTNSGLITWGKRSADTEIPIHKRKWNQFITWGKRSGVPSIVKRSVGDELVPWGKNKDTLPELNTSSDNLDNKLIDLETTPSTDKLSLDEKRASDKGWNGFTTWGKRANKDWSSLSTWGKRGQNKDWSSLTTWGKRGHDRDWNSLTTWGKRANKDWSSLSTWGKRARENDWSALSTWGKRANNKDWASLTTWGKRANDRDWNSLTTWGKRAKGNNWSGLTTWGKRANKDWNSLTTWGKRANKDWSGLTTWGKRGNKDWSGLTTWGKRGNKDWSGLTTWGKRGNKDWSGLTTWGKRGNKDWSGLTTWGKRGKNDWSGLTTWGKRGNKDWSGLTTWGKRGNNDWSGLTTWGKRGKNDWSGLTTWGKRSPDATSEDSGELSTLDKKDIKGWNGLTTWGKRFAGDKNKWSSLTTWGKRDDNNKQDDKKWAQLSTWGKRSPEDAAELWKIYDSNGDGIMDKEEMVSFLRSAASQKDSQQDEKS
8
+ >gi_300048851_Apis
9
+ MQNVLGRIAATLVILCPVIVFTIPESAIQASSIKSSQTEQDNSDYTRSFDEDQEEKRAWRDLQTAGWGKRGWQNLKTTWGKRAQDWQNLHSSWGKRQGWQKLHGGWGKRGWKDMQSGGWGKRFKDQPASSQLSQFDEYLDKYEEENPNEAEKRSWDNFQGSWGKRAADWTSFRGSWGKRNPVDYMNEYSXYGDNDNYKAYIFPPGYNNYLPNFQTEYEK
10
+ >gi_298366123_Hvir
11
+ MRYCVAALWLSALTTLVVAAADDAHHDVAPPQTDNEIELSEEEKRAWSSLHGGGGWGKRGWQDMSSAWGKRGWNDMSSAWGKRGWNDMSSAWGKRAWQDLNSAWGKRAWQDLNSAWGKRAWRDMSQSPWGKRGWQDMSSAWGKRGWNDMSSAWGKRGWNDMSSAWGKRGWNDMSSAWGKRGPEKWANFHGSWGKRSEEPDYEEIDAAIEQLIPIQQLSDSEHMEAPEKR
12
+ >gi_219522029_Tcas
13
+ MMSFAAAIMRDAVAPVLGAVLLTCYSLQATLALSDETPLKSSNDNPQIEDEMSKRDWNKDLHIWGKRGWNNLHEGWGRKRSVPAWEEQQEKRAWQSLQSGWGKRFAPEDEYAIRQLAAMLDSQYDDYNPEIETNDDEKRNWGQFHGGWGKRSKWDNFRGSWGKREPAWSNLKGIWGKRSGEK
14
+ >Ensembl_C01A2.7.2_Cele
15
+ MQLIHFIVGLAMLISLSLAASDDRVLGWNKAHGLWGKRSVQEASQDKRTPQNWNKLNSLWGKRSASSFDDDYTTENGDDDVTMLYKRSPAQWQRANGLWGR
16
+ >MPI_GENEPREDICTION_JIGTRA00000190063_Ppac
17
+ MQSTIVAAVFAALLLVSAAQEEPRGWNKAYGLWGKRSLPMDEDIMALEESAMPKRASERSWGKLNNIRLIEQQGDFLVRASSPGTTTEIILTACDNRSMPVHAALRFDIVWFFPAKEGGKQLSFPTVSDLIDHYIDHPPKNVPLTRAIPRLEPELRLDNIYYEGNHCIGRGAYTTTFWGSLTRPFHGDNKSIAVKIPTVAEGDKAVNMAARRAQLLEESAKLLYCLHPNVARFLGIAFDATYLLIVSEHVPGKSLHRHLTKFGVLTDNREKLLYLLEVAAGVNYLHDKGIVHRAIAARNCYVTVTGKIVVGDYGVNTLIDTGFGERHSCWCRQGPPQRWLAPETLGSSTAFSKASDCWALGILAYEIFANSEQPWPGMTDLQMECEIRKGTGPAMPAATPDRVVVLLKRIWDATPQRRIAIKQIGKEIINMIEDTIRLIGEFPADLLTLNRIPQVTRAVYYEPTAYDFTKVGDVLTASQWTSNSSSSSSAETSPVFGSTLINVKEGSTTRSSSATSLAPPAPVSPAPVSTYFDSNLKENR
data/data/raw_data/Protostomian_Allatostatin_B.fa.aligned.fa ADDED
@@ -0,0 +1,120 @@
1
+ >AltB_DB915757_Idiosepius_paradoxus
2
+ -----------------------------------SESKSLKPLS--VIKAENLKS----
3
+ ---------------WAKRSTTNGKVLNEIRQAVARGVFPAAVGPIDKSGDKYMSFLQHW
4
+ LKNNGYPATMAN-------LWARNTGFKSRVTREINNNDDDLPDKKDRLDT---------
5
+ ---------------------------------------------------------W--
6
+ NSMN--TWGKRS-----------PNTW--DSMA-AWGK----R-----------------
7
+ -----------------------NGDTW--DSMSAWGKR---------------------
8
+ -------------------------------NGDTWDSM--SAWGKRNGDT-------W-
9
+ -DSMSAWGKR--------------------------------------------------
10
+ -----------------------------------------------N--GDTWDSMSAW
11
+ GKRNG----------DTWDS----MSAWGKRNGDTW--DSMSAWGKRNADN---------
12
+ ------------------------AGDKRDWDSLQ-------------------------
13
+ -----AW-------------GKRN--------------------------------IAP-
14
+ ------------------------------------------------------------
15
+ ------------------------
16
+ >jgi_197880_Ctel
17
+ MASCR--LLLTVITLVICSLVVLADDPETE-----EQAQDLVPHD---------------
18
+ ----------------------------------------MDQDLMDKRK---------W
19
+ GSNS-------------MRVWGKR------------DGDDEMEM-------------DGG
20
+ AEKRK---------------------------WG--GNN----NM-RVWGKRK----WGA
21
+ NSMR--VWGKRS-----ELPEEEKRKWGGSNTMRTWGK----RADDNEEDELAK-RKWGS
22
+ N-----------SMRVWGKRADDNKRKWGSNSMRVWGKRA-----DDDMDE---------
23
+ -------------------------------SKRGWKNNNMRVWGKRADDEIDEDKRKWG
24
+ SNSMRVWGKRS--ADDDAELAA--------------------------------------
25
+ -------------AVPHAIVKRSLDSEEFTDDMEKRRW-------GGN-------DMRVW
26
+ GKRRS--RADGPK--RSWKTN--VMRVWGKRG---WADNNMRVWGKRADEG---------
27
+ -------------------------AEKRAWVGDKSL-----------------------
28
+ -----SW-------------GKRSDN---EVIR-------NLLA----EQVMMISIISPT
29
+ KY--LRDVAICVGGVLGG---------------------FSRDPLSE-------------
30
+ ------------------------
31
+ >jgi_231501_Lgig
32
+ M-D-----LKTILCLIIYSLLLQISHAEEQLANDIELSNSLNPVDKRAWKSSYLNTWGKR
33
+ WNPRYNLRGYQRMPIWAKRWTNSGLITWGKRSADTE-------IPIHKR--KWNQFIT-W
34
+ GKRSGVPSIVKRSVGDELVPWGKN----KDTLPELNTSSDNLDNKLIDLETTPSTDKLSL
35
+ DEKRASDKGWNGFTTWGKRANKDWSSL---STWGKRGQNKDWSSL-TTWGKRGHDRDW--
36
+ NSLT--TWGKRA-----------NKDW--SSLS-TWGK----RARENDWSAL---STWGK
37
+ RAN----NKDWASLTTWGKRA--NDRDW--NSLTTWGKRA--------------------
38
+ -------------------------------KGNNWSGL--TTWGKRANKD-------W-
39
+ -NSLTTWGKRA--NKDWSGLTTWGKRGNKDWSGLTTWGKRGNKDWSGLTTWGKRGNKDWS
40
+ GLTTWGKRGNKDWSGLTTWGKRGKNDWSGLTTWGKR----------GN--KD-WSGLTTW
41
+ GKRGN----------NDWSG----LTTWGKRGKNDW--SGLTTWGKRSPDAT---SEDSG
42
+ ELSTLDKKDIKGWN-GLTTWGKRFAGDKNKWSSLT-------------------------
43
+ -----TW-------------GKRDDNNKQD----------D----KKWAQLSTWGKRSPE
44
+ DA---------------AELWKIYDSNGDGIMDKEEMVSFLRSAASQK------------
45
+ ----------------DSQQDEKS
46
+ >gi_300048851_Apis
47
+ MQNV---LGRIAATLVILCPVIVFTIPESA-----IQASSIKSSQ---------------
48
+ ------------------------------------------------------------
49
+ ------------------------------------TEQDNSDYTR--------SFDEDQ
50
+ EEKRA----------------------------------------------------W--
51
+ RDLQTAGWGKRG--------------W--QNLKTTWGK----RAQD--------------
52
+ ---------------------------W-QNLHSSWGKR---------------------
53
+ ---------------------------------QGWQKLH-GGWGKRG----------WK
54
+ DMQSGGWGKR----------------------------------FK--------------
55
+ -------------DQPASSQLSQFDEYL-----------------------------DKY
56
+ EEENP----------NEAE----------KRS---W-DNFQGSWGKRAAD----------
57
+ ------------------------------WTSFRG------------------------
58
+ -----SW-------------GKRN----------------------------------PV
59
+ DY------------------------------------------MNEYSXYGDNDNYKAY
60
+ IFPPGYNNYLP-----NFQTEYEK
61
+ >gi_298366123_Hvir
62
+ --------MRYCVAALWLSALTTLVVAAAD-----DAHHDVAPPQ---------------
63
+ ------------------------------------------------------------
64
+ -------------------------------------TDNEIEL--------------SE
65
+ EEKRA------------------WSSLHGGGGWGKRG----WQDMSSAWGKRG----W--
66
+ NDMS-SAWGKRG--------------W--NDMSSAWGK----RA----------------
67
+ ---------------------------W-QDLNSAWGKR---------------------
68
+ ----------------------------------AWQDLN-SAWGKRA----------WR
69
+ DMSQSPWGKRG---------------------------------WQ--------------
70
+ -------------DMSSAWGKRGWNDMS-----------------------------SAW
71
+ GKRGW----------NDMSS------AWGKRG---W-NDMSSAWGKRGPEK---------
72
+ ------------------------------WANFHG------------------------
73
+ -----SW-------------GKRSEEPDYEEI--------D----AAIEQ------LIPI
74
+ QQ------------------------------------------LSDSE-----------
75
+ ----------------HMEAPEKR
76
+ >gi_219522029_Tcas
77
+ MMSFAAAIMRDAVAPVLGAVLLTCYSLQAT-----LALSDETPLK---------------
78
+ ------------------------------------------------------------
79
+ ------------------------------------SSNDNPQI-------------EDE
80
+ MSKRD----------------------------------------------------WN-
81
+ KDLH--IWGKRG--------------W--NNLHEGWGR----KRSVP-------------
82
+ --------------------------AW-EEQQE---KR---------------------
83
+ ----------------------------------AWQSLQ-SGWGKRF------------
84
+ -APEDEYAIR--------------------------------------------------
85
+ --------------QLAAMLDSQYDDYNP------------------------EIETNDD
86
+ EKRNW----------GQFHG------GWGKRS--KW-DNFRGSWGKREPA----------
87
+ ------------------------------WSNLKG------------------------
88
+ -----IW-------------GKRS------------------------------------
89
+ ---------------------------------------------GEK------------
90
+ ------------------------
91
+ >Ensembl_C01A2.7.2_Cele
92
+ --------MQLIHFIVGLAMLISLSLA---------------------------------
93
+ ------------------------------------------------------------
94
+ -----------------------------------------------------------A
95
+ SDDRV---------------------------LG-----------------------W--
96
+ NKAH-GLWGKRSV----------------QEAS---------------------------
97
+ -----------------------------------QDKR---------------------
98
+ -------------------------------TPQNWNKLN-SLWGKRSASSFD-------
99
+ ------------------------------------------------------------
100
+ ------------------------------------------------------------
101
+ ---------------DDYTT---------ENG-----DDDVTMLYKRSPAQ---------
102
+ ------------------------------WQRANG------------------------
103
+ -----LW-------------GR--------------------------------------
104
+ ------------------------------------------------------------
105
+ ------------------------
106
+ >MPI_GENEPREDICTION_JIGTRA00000190063_Ppac
107
+ --------MQSTIVAAVFAALLLVSAAQ--------------------------------
108
+ ------------------------------------------------------------
109
+ ------------------------------------------------------------
110
+ EEPRG----------------------------------------------------W--
111
+ NKAY-GLWGKRSLPMDEDIMALEESAMPKRASERSWGKLNNIRLIEQQGDFLVRASSPGT
112
+ TTEIILTACDNRSMPV--HAALRFDIVW-FFPAKEGGKQLSFPTVSDLIDHYIDHPPKNV
113
+ PLTRAIPRLEPELRLDNIYYEGNHCIGRGAYTTTFWGSLTRPFHGDNKSIAVKIPTVAEG
114
+ DKAVNMAARRAQLLEESAKLLYCLHPNVARFLGIAF---------------------DAT
115
+ YLLIVSE------HVPGKSLHRHLTKFGVLTDNREKLLYLLEVAAGVNYLHDKGIVHRAI
116
+ AARNCYVTVTGKIVVGDYGVNTLIDTGFGERH---------SCWCRQGPPQRWLAPETLG
117
+ S-STAFSKASDCWALGILAY-EIFANSEQPWPGMTDLQMECEIRKGTGPAMPAATPDRVV
118
+ VLLKRIWDATPQRRIAIKQIGKEIINMIEDTIRLIGEFPADLLTLNRIPQVTRAVYYEPT
119
+ AYDFTK-----VGDVLTASQWT---SNSSSSSSAETSPVFGSTLINVKEGSTTRSSSATS
120
+ LAPPAPVSPAPVSTYFDSNLKENR
data/data/raw_data/Protostomian_CCH_amide.fa ADDED
@@ -0,0 +1,24 @@
1
+ >gi_161278389_Ctel
2
+ MLSVRSVGVLVGIAVLFSLQSFVQAKCGGSWAIHACAGGNGKRSEGSAGARAPPALCRATRARRSTEATLPAIHREFCRGTSERPN
3
+ >gi_163502663_Lgig
4
+ MEVRCTTLFAVTSLLYLTISVSLVSGKCSGRWAIHACFGGNGKRSDPSLTDNTENSRQETLLRQILLPQTYEYHKSNDALLQDDDINTYEKSHEESQRMRDLRALNILLKTLMMEQKVRTENSVMA
5
+ >gi_203607807_Acal
6
+ MELTFGSSFTVALLSCLYISLITCPVVTAKCHGRWAIHACFGGNGKRSDPNMSPSTDELPPTLLRQLLVSDVQRLSRLLREPEAPVEDADLSPNPGFEPGHPNEQLMPRLAAQKPVD
7
+ >gi_260741759_Cgig
8
+ MRNPSSFVLFSATLCVYFTVQISSVSASKCKGPWANHMCFGGNGKRSWSPPVQEPEMNRKDDELGRTMLRNVLLKRLNTYPSMSSYYSDSQSFYPMGSDFTEEGDSMSRENELRQLLKEQILRKEMAALVGDDDVYE
9
+ >jgi_304056_Dpul
10
+ MHIFFYVIHVTAMLAIVSGNCNKYGNACFGAHGKRSDFKRTSAVDLSDQIWPVAANWNPTRPDEPIQERRQMKPLPALQLESVLVYNDIPRSAEHSRYLNQEDYNN
11
+ >gi_194306572_Bmor
12
+ MAQICLAVSIAVLLMMSQGVSAKRGCSAFGHSCFGGHGKRSGEPAPMDMANQDMMVRHQLGQEETPPHPGYPHSSYNVLQPGDDIIPIRDGGVYDHDAAARDVMKYKLRNIFKHWMDNYRRSQNTNDEYFLETI
13
+ >BCM_GLEAN_00168_Tcas
14
+ MNCWSTQVVLLAFVMAFVLAAAEAKRGCATFGHSCYGGMGKRTENNNEELLQDVQSEENPAFVFTGPRSENQQKLTPEQYDNISRVIRQWILSYRRAQEMRPDYN
15
+ >gi_328778572_Apis
16
+ MAITSVNSQSVTVLIRTWIFMIIFCFAGGVAGSCLSYGHSCWGAHGKRNGGHNNGYLVPSKTINEQGVPYLTKDQFILSRLIGRPLVSNKYKGRWDRLFKIKASFPEHWNDDELDTHLINNEPIRDQNNNENMNQNKRKHIENVQNMAEYDNINDERKEIPEILLISNNENNHHDSKPQNAELFKFLSNTNDNFE
17
+ >gi_328778594_Apis
18
+ MKNNATSGLPLSVCASICALIILIFFTDNSYAKRGCSAFGHSCFGGHGKRFDPNIREKILQDDDTITNREIEDLNSRNEFDVSEKKFGGQTEILSSQSRHQDSSRFNPFALSFIVRQWLTSHRLHQPDMELNNK
19
+ >gi_27616677_Agam
20
+ MHQLSTICFTLVIVSVLVQSTNGKRGCAAFGHACYGGHGKRSGSSASTLYPDGLDPSMVGLEVLPIPYSKLALDKSRSMDSAPEGMRLTNVYGFDVPAASTHRTETRPGELKYAIYAMLRQLMDEAAINRQEQSHQQQQAQTLNQPPFPHEAASVSDIERK
21
+ >Ensembl_FBtr0113232_CCHa1_Dmel
22
+ MWYSKCSWTLVVLVALFALVTGSCLEYGHSCWGAHGKRSGGKAVIDAKQHPLPNSYGLDSVVEQLYNNNNNNQNNQDDDNNDDDSNRNTNANSANNIPLAAPAIISRRESEDRRIGGLKWAQLMRQHRYQLRQLQDQQQQGRGRGGQGQYDAAAESWRKLQQALQAQIDADNENYSGYELTK
23
+ >Ensembl_FBtr0303263_CCHa2_Dmel
24
+ MKSTISLLLVVICTVVLAAQQSQAKKGCQAYGHVCYGGHGKRSLSPGSGSGTGVGGGMGEAASGGQEPDYVRPNGLLPMMAPNEQVPLEGDFNDYPARQVLYKIMKSWFNRPRRPASRLGELDYPLANSAELNGVN
data/data/raw_data/Protostomian_CCH_amide.fa.aligned.fa ADDED
@@ -0,0 +1,72 @@
1
+ >gi_161278389_Ctel
2
+ MLSVRSVGVLVGI---------AVLFS--LQSFVQAKCGGSWAIHACAGGNGKRSEGSAG
3
+ ARA-------------------------------------PPALCRAT------------
4
+ ------------------------------------------------------------
5
+ ----------------RARRST-------EATLPAIHREFCR------------------
6
+ ----------------GTSERPN-------------
7
+ >gi_163502663_Lgig
8
+ MEVRCTTLFAVTS---------LLYLT-ISVSLVSGKCSGRWAIHACFGGNGKRS-----
9
+ ----------------------------------------DPSLTDNT------------
10
+ -------ENSRQETLLRQILLPQTYEYHK------SNDALLQD-----------DDINTY
11
+ ----------EKSHEESQRMRD-------LRALNILLKTLMMEQ----------------
12
+ ----KV----------RTENSVM------------A
13
+ >gi_203607807_Acal
14
+ MELTFGSSFTVAL-------LSCLYISLITCPVVTAKCHGRWAIHACFGGNGKRS-----
15
+ ----------------------------------------DPNMSPST------------
16
+ --------DELPPTLLRQLLVSDVQRLSRLL---REPEAPVED-----------ADLSPN
17
+ PGFE----PGHPNEQLMPRL---------------AAQKPVD------------------
18
+ ------------------------------------
19
+ >gi_260741759_Cgig
20
+ MRNPSSFVLFSATL--------CVYFTVQISSVSASKCKGPWANHMCFGGNGKRSWSPP-
21
+ --------------------------------------VQEPEMNRKD------------
22
+ --------DELGRTMLRNVLLKRLNTYP-------SMSSYYSDSQSFY---PMGSDF---
23
+ ----------TEEGDSMSREN--------------ELRQLLKE-----------------
24
+ ------QILRKEMAALVGDDDVY------------E
25
+ >jgi_304056_Dpul
26
+ MHI----------------FFYVIHVT-AMLAIVSGNCNKYG--NACFGAHGKRSDFKRT
27
+ SAVDLSDQI-------------------------------WPVAAN--------------
28
+ -----W-----------------------------NPTRPDEPIQE-------RRQMKPL
29
+ PALQLES---VLVYNDIPRSA--------------EHSRYLN------------------
30
+ ------------------QEDYN------------N
31
+ >gi_194306572_Bmor
32
+ M---AQICLAVSI---------AVLLMMSQGVSAKRGCSAFG--HSCFGGHGKRSG----
33
+ ----------------------------------------EPAPM---------------
34
+ --------DMANQDMMVRHQLGQEETPPHPG----YPHSSYNVLQP-------GDDIIPI
35
+ RD------GGVYDHDAAARDV-------MKYKLRNIFKHWMD------------------
36
+ -------NYRRSQ---NTNDEYF---------LETI
37
+ >BCM_GLEAN_00168_Tcas
38
+ MNCWSTQVVLLAF---------VMAFV-LAAAEAKRGCATFG--HSCYGGMGKRTENNN-
39
+ ------------------------------------------------------------
40
+ -----------------EELLQDVQSEENPAFVFTGPRSENQQKLT--------------
41
+ ----------PEQYDNISR----------------VIRQWIL------------------
42
+ -------SYRRAQ---EMRPDYN-------------
43
+ >gi_328778572_Apis
44
+ MAITSVNSQSVTVL--IRTWIFMIIFC--FAGGVAGSCLSYG--HSCWGAHGKRNGGHNN
45
+ GYLVPSKTINEQGVPYLTKDQFILSRLIG-----------RPLVSNKYKGRWDRLFKIKA
46
+ SFPEHWNDDELDTHLINNEPIRDQNNNENMN---QNKRKHIENVQNMAEYDNINDERKEI
47
+ PEILLISNNENNHHDSKPQNA--------------ELFKFLS------------------
48
+ ----------------NTNDNFE-------------
49
+ >gi_328778594_Apis
50
+ MKNNATSGLPLSVCASICALIILIFFT--DNSYAKRGCSAFG--HSCFGGHGKRF-----
51
+ ----------------------------------------DP------------------
52
+ --------------NIREKILQDDDTITNREIEDLNSRNEFDVSEKKF---GGQTEILSS
53
+ ----------QSRHQDSSRFN--------PFALSFIVRQWLT------------------
54
+ -------SHRLHQPDMELNN---------------K
55
+ >gi_27616677_Agam
56
+ MHQLSTICFTLVI---------VSVLV--QSTNGKRGCAAFG--HACYGGHGKRSGSSAS
57
+ TL--------------------------------------YP------------------
58
+ --------DGLDPSMVGLEVLPIPYSKLAL-----DKSRSMDSAPE-------GMRLTNV
59
+ YGFDVPA---ASTHRTETRPGE------LKYAIYAMLRQLMDEAAIN-------------
60
+ ---RQEQSHQQQQAQ-TLNQPPFPHEAASVSDIERK
61
+ >Ensembl_FBtr0113232_CCHa1_Dmel
62
+ MWY-SKCSWTLVVL--------VALFA-----LVTGSCLEYG--HSCWGAHGKRSGGKA-
63
+ ----------------------------------VIDAKQHPLP----------------
64
+ --------NSYGLDSVVEQLYNNNNNNQNNQ----DDDNNDDDSNR-------NTNANSA
65
+ NNIPLAAPAIISRRESEDRRIGGLKWAQLMRQHRYQLRQLQDQQQQGRGRGGQGQYDAAA
66
+ ESWRKLQQALQAQID-ADNENYSGYELT-------K
67
+ >Ensembl_FBtr0303263_CCHa2_Dmel
68
+ MK--STISLLLVV-------ICTVVLA-AQQSQAKKGCQAYG--HVCYGGHGKRSLSPGS
69
+ GSGT--------GV--------------GGGMGEAASGGQEP------------------
70
+ --------DYVRPNGLLPMMAPNEQVPLE-------------------------------
71
+ ----------GDFNDYPARQV-----------LYKIMKSWFNRP----------------
72
+ ----RRPASRLGELDYPLANSAELNGV--------N
data/data/raw_data/Protostomian_Ecdysis_Triggering_Hormone.fa ADDED
@@ -0,0 +1,24 @@
1
+ >jgi_scaffold_397:50652-51471_Ctel
2
+ MVNSIPALVVAITLLKLSSAIFYTNSKENDYPRLGRRASISANELWDVRRESDLGSQKSNFEEILDPRDQELGVVIANMMNQHKGWIYPTPCFMLRFVSEQFSKLADIFFFPISLLLICRYVF
3
+ >gi_223784846_Apom
4
+ MAGDQLVARWSQLLLLLFLVAKALAIFYAQNEGNDFPRIGRRSSLLAPRSLKESDGGLDVHSSGRQDGADFTPLRDYLRRRELALMVASYRQTEFPFAALRHEIRRTKPTSGQ
5
+ >jgi_173607_Pleurin_Lotgi1
6
+ MRQEVLLLMFCMFTTSCCGVFYTSSKANDYPRIGRRSFFTSSKENTYPRMGRSGDDGKVTIDMLKRRFTAGDSASYPRLGRAGYFTKGAASYPRLGRSSNSLDVEDIQDLMPDSDEELPQRNIAHLGLQAPLAFLLWDKNGDGHLSKSEFLTGLSKTRHRPSHKK
7
+ >gi_270524441_Hdiv
8
+ MKESLVFLVFAVAGSCAGIFWTNSKDSDYPRIGRRSFYTASSENTYPRIGRSGGVEDTFRDGIETRGSFFTQSDENTFPRIGRGNDNSDGDNVNKVRTKLQI
9
+ >gi_168891936_Daphnia_pulex
10
+ MIKGLFLTWLLLASALSDPSPEPFNPNYNRFRQKIPRIGRRGEGIIAEYMNSESFPHEGSLSNFFLKASKAVPRLGRRKDISTESGRAAMVGEEPFGRISNEIPIMNQKQDLWPNMNINELTGALNKELNYPGPRIPKDLQDNYIQDLIHSWINQYENLNEN
11
+ >gi_288558759_Tribolium_castaneum
12
+ MRRYQILLIVIFFNILFDSTLSENYVLKAAKNVPRIGRSNTNKNTNIDEMGKFFMKASKSVPRIGRRNENFDYGQPIVKRDEGGFVISSLLLHYCSILVPIWSDIADRFEYDPEILTSPEILEQLEMGDDPSVYEWEKIRTKRDSHKPHPKFYYVM
13
+ >gi_158218475_Acyrthosiphon_pisum
14
+ MSGYLAIIVLVCLQILRVMSINEFPEKKVQNIWLADLDDKQIASRIERSDQFETASDVLMKDASVYPKITRRGFAGEEFFLKASKSVPRIGRRNNDIQETPKRSLSKDQVNMVEYWPYLQPNDINDLTRKHDFDLPYNCQQLDAKTIFLVDMYNFVCNDQFYCCAPAKRAIANSPNSNSFVKKRSTTSYRNIIFL
15
+ >gi_158183626_Nvit
16
+ MKRLVNTFISRNYILSAIFIVAVLAIIENKIVAADEPPAFFLKIAKNIPRIGRSEPYDEYAIKNSNVKDDIPWHKGEISKRRVGFSPESNTYAWQHFPLAIEGPPELWRTLAGYSHDPLYKTTDDFNNELWSRDKRTNNPEA
17
+ >gi_210142303_Amel
18
+ MTSLRSLGFVRCFFVGAIWISILALLICENASMADEVPAFFLKIAKNIPRVGRSEGYDDFFKSRKNLPKLGNHDGQSESWPQYSVDEPFSRPIKRRVDYPSVDDWSWQHFPLAIEGPRELWRTLAGYSKDTSDDVDNEIWKRKKRTGNEPMASEEN
19
+ >gi_288558757_B.mori
20
+ MTSKLTMMLFTLSLMFIAGLDGSFIKPNNVPRVGRSNEAFDEDVMGYVIKSNKNIPRMGRRNYDSGNHFDIPKVYSLPFEFYGDNEKSLNNDDAEEYYAKKMGSMKK
21
+ >gi_55877638_Lmig
22
+ MLLCKETLASLAVVLVVAAAAAAPEEGGGLLLKPHVARRSDFFLKTAKSVPRIGRRSDLFLKSAKSVPRIGRRTNLAPIEAQDGGEWLWPGGADALPMPARRQAYYVRKDGQPVMWSDVARDVEENPDLWPWSDFDSG
23
+ >Ensembl_FBtr0072426_ETH_Dmel
24
+ MRIITVLSVSLLVGLVAISQADDSSPGFFLKITKNVPRLGKRGENFAIKNLKTIPRIGRSEHSSVTPLLAWLWDLETSPSKRRLPAGESPAKEQELNVVQPVNSNTLLELLDNNAIPSEQVKFVHWKDFDRALQADADLYSKVIQLGRRPDQHLKQTLSFGSFVPIFGDEQNPDFMMYKNNEDQELYGGGNRYDRQFLKYNIL
data/data/raw_data/Protostomian_Ecdysis_Triggering_Hormone.fa.aligned.fa ADDED
@@ -0,0 +1,84 @@
1
+ >jgi_scaffold_397:50652-51471_Ctel
2
+ MVNSIP------ALVVAITLLKLSS-----------------------------------
3
+ ----------------------------------------AIFYTNSKENDYPRLGRRA-
4
+ -SIS-----------------ANELWDVRRESDLGS------------------QKSNFE
5
+ EILDPRDQEL--------------GVVIANMMNQHKGWIYPT--------------PCFM
6
+ LRFVSEQFSKLADIF-------------------FFPISLLLICR---------------
7
+ --------------------------------YVF
8
+ >gi_223784846_Apom
9
+ MAGDQLVAR-WSQLLLLLFLVAKAL-----------------------------------
10
+ ----------------------------------------AIFYAQNEGNDFPRIGRRS-
11
+ ---------------------SLLAPRSLKESDGGLDVHSSGRQDGA-------DFTPLR
12
+ DYLRRRELAL--------------------MVASYRQTEFPF------------------
13
+ -----------------------------------AALR---------------------
14
+ --------------HEIRRTKPTSGQ---------
15
+ >jgi_173607_Pleurin_Lotgi1
16
+ MRQ---------EVLLLMFCMFTTSCC---------------------------------
17
+ ----------------------------------------GVFYTSSKANDYPRIGRRS-
18
+ -FFTSSK--------------ENTYPRMGRSGD---------------------DGKVTI
19
+ DMLKRR-------------------------FTAGDSASYPRLGRAGYFTKGAASYPRLG
20
+ RSSNSLDVEDIQDLMPD--SDEELPQRNIAHLGLQAPLAFLL---------------WDK
21
+ NGDGHLSKSEFLTGLSKTRHRPSHKK---------
22
+ >gi_270524441_Hdiv
23
+ MKE---------SLVFLVFAVAGSCA----------------------------------
24
+ ----------------------------------------GIFWTNSKDSDYPRIGRRS-
25
+ -FYTASS--------------ENTYPRIGRSGG---------------------VEDTFR
26
+ DGIETR----------------------GSFFTQSDENTFPRIGRG--------------
27
+ ----------------------------------------------------------ND
28
+ NSDGDNV--------NKVRTK-----------LQI
29
+ >gi_168891936_Daphnia_pulex
30
+ MIKGL-------FLTWLLLASALSDPSPEPF------N----------------------
31
+ ---PNYNRFRQKIPRIGRRGEGIIAEYMNSESFPHEGSLSNFFLKASK--AVPRLGRRK-
32
+ -DISTESGRAAMVGEEPFGRISNEIPIMNQKQD----------------LWPNMNINELT
33
+ GALNKELNYPG-------------PRIPKDLQDNYIQDLIHS------------------
34
+ WINQYENLNEN-------------------------------------------------
35
+ -----------------------------------
36
+ >gi_288558759_Tribolium_castaneum
37
+ MRRYQ-------ILLIVIFFNILFDSTLSEN-----------------------------
38
+ ----YVLKAAKNVPRIGRSNTNKNTNID---------EMGKFFMKASK--SVPRIGRRN-
39
+ -ENF-----------------DYGQPIVKRDEG---------------------------
40
+ ------------------------GFVISSLLLHYCSILVPI------------------
41
+ WSDIADRFEYDPEIL-------TSPE-------ILEQLE------------------MGD
42
+ DPSVYEW--------EKIRTKRDSHKPHPKFYYVM
43
+ >gi_158218475_Acyrthosiphon_pisum
44
+ MSGYL-------AIIVLVCLQILRVMSINEFPEKKVQNIWLADLDDKQIASRIERSDQFE
45
+ TASDVLMKDASVYPKITRRGFAGE----------------EFFLKASK--SVPRIGRRN-
46
+ -ND------------------IQETPKRSLSKD----------QVNMVEYWPYLQPNDIN
47
+ DLTRKHDFDL---PYNCQQLD-AKTIFLVDMYNFVCNDQFYC------------------
48
+ ----------------------CAPAK--------RAIA--------------------N
49
+ SPNSNSF--------VKKRSTTSYRN-----IIFL
50
+ >gi_158183626_Nvit
51
+ MKRLVNTFISRNYILSAIFIVAVLAIIENKI-----------------------------
52
+ -------VAADEPP--------------------------AFFLKIAK--NIPRIGRSEP
53
+ YDEYAIKN----------SNVKDDIP------------------------WHK-------
54
+ GEISKRRVGF-----------------------------SPESNTYA-------------
55
+ WQHFPLAIEGPPELW--------------------RTLA--------GYSHDP-LYKTTD
56
+ DFNNELW-------SRDKRTNNPEA----------
57
+ >gi_210142303_Amel
58
+ MTSLRSLGFVRCFFVGAIWISILALLICENA-----------------------------
59
+ -------SMADEVP--------------------------AFFLKIAK--NIPRVGRSEG
60
+ YDDFFKS--------------RKNLPKLGNHDGQSE-------------SWPQYSVDEPF
61
+ SRPIKRRVDY------------------------------PSVDDWS-------------
62
+ WQHFPLAIEGPRELW--------------------RTLA--------GYSKD-----TSD
63
+ DVDNEIW-------KRKKRTGNEPMASEEN-----
64
+ >gi_288558757_B.mori
65
+ MTSKLTMM---LFTLSLMFIAGLDGSFIKPN-----------------------------
66
+ -----------NVPRVGRSNEAFDEDVM------------GYVIKSNK--NIPRMGRRN-
67
+ -YDSGN---------------HFDIPKV--------------------------------
68
+ ------------------------------------------------------------
69
+ -----------------------------------YSLPF----EFYGDNEK-----SLN
70
+ NDDAEEYYAKKM--GSMKK----------------
71
+ >gi_55877638_Lmig
72
+ MLLCKETL----ASLAVVLVVAAAAAAPEEG-----GGLLLK------------------
73
+ -------------PHVARRS--------------------DFFLKTAK--SVPRIGRRS-
74
+ -DLFLKS--------------AKSVPRIGRRTNLA-PIEA---QDGGEWLWP--GGADAL
75
+ PMPARRQAYY------------------------VRKDGQPVM-----------------
76
+ WSDVARDVEENPDLW------------------------------------------PWS
77
+ DFDSG------------------------------
78
+ >Ensembl_FBtr0072426_ETH_Dmel
79
+ MR--------IITVLSVSLLVGLVAIS---------------------------------
80
+ -------QADDSSP--------------------------GFFLKITK--NVPRLGKRG-
81
+ -ENFAIKN-------------LKTIPRIGRSEHSSV-------TPLLAWLW------DLE
82
+ TSPSKRRLPAGESPAKEQELNVVQPVNSNTLLELLDNNAIPS-----------EQVKFVH
83
+ WKDFDRALQADADLYSKVIQLGRRPDQH-----LKQTLSFGSFVPIFGDEQNPDFMMYKN
84
+ NEDQELY-------GGGNRYDRQFLK-----YNIL