neurohmmer 0.1.0

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Files changed (133) hide show
  1. checksums.yaml +7 -0
  2. data/.gitignore +35 -0
  3. data/CODE_OF_CONDUCT.md +13 -0
  4. data/Gemfile +4 -0
  5. data/LICENSE +662 -0
  6. data/README.md +136 -0
  7. data/Rakefile +17 -0
  8. data/bin/neurohmmer +69 -0
  9. data/data/hmm/CRH_DH44.fa.hmm +427 -0
  10. data/data/hmm/Chordate_Glucagon_PACAP.fa.hmm +484 -0
  11. data/data/hmm/Chordate_Neurotensin_precursors_neurotensin_like_Ciona.fa.hmm +526 -0
  12. data/data/hmm/Deutrostomian_tachykinin.fa.hmm +367 -0
  13. data/data/hmm/Gastrin_releasing_peptide.fa.hmm +448 -0
  14. data/data/hmm/GnRH.fa.hmm +370 -0
  15. data/data/hmm/Hypocretin_orexin.fa.hmm +451 -0
  16. data/data/hmm/Lophotrochozoan_luqin_arthropod_RYamide.fa.hmm +385 -0
  17. data/data/hmm/NPFF.fa.hmm +430 -0
  18. data/data/hmm/NPS.fa.hmm +790 -0
  19. data/data/hmm/PTH.fa.hmm +502 -0
  20. data/data/hmm/Protostomian_Allatostatin_B.fa.hmm +835 -0
  21. data/data/hmm/Protostomian_CCH_amide.fa.hmm +415 -0
  22. data/data/hmm/Protostomian_Ecdysis_Triggering_Hormone.fa.hmm +433 -0
  23. data/data/hmm/Protostomian_PDF.fa.hmm +265 -0
  24. data/data/hmm/Protostomian_allatostatin_C.fa.hmm +352 -0
  25. data/data/hmm/Protostomian_proctolin.fa.hmm +346 -0
  26. data/data/hmm/Putative_chordate_Opioid.fa.hmm +802 -0
  27. data/data/hmm/SIF.fa.hmm +286 -0
  28. data/data/hmm/TRH.fa.hmm +910 -0
  29. data/data/hmm/allatotropin.fa.hmm +433 -0
  30. data/data/hmm/ambulacrarian_amphioxus_NPS-like.fa.hmm +847 -0
  31. data/data/hmm/avp.fa.hmm +475 -0
  32. data/data/hmm/calcitonin_DH31.fa.hmm +418 -0
  33. data/data/hmm/cholecystokinin_sulfakinin.fa.hmm +433 -0
  34. data/data/hmm/chordate_OX26_QRFP.fa.hmm +475 -0
  35. data/data/hmm/chordate_somatostatin_cortistatin_like.fa.hmm +361 -0
  36. data/data/hmm/f_type_SALMF.fa.hmm +811 -0
  37. data/data/hmm/galanin.fa.hmm +391 -0
  38. data/data/hmm/l_type_SALMF.fa.hmm +523 -0
  39. data/data/hmm/nmu_pyrokinin.fa.hmm +424 -0
  40. data/data/hmm/npy_npf.fa.hmm +301 -0
  41. data/data/hmm/protostomian_CCAP.fa.hmm +415 -0
  42. data/data/hmm/protostomian_allatostatinA_buccalin.fa.hmm +706 -0
  43. data/data/hmm/protostomian_leucokinin.fa.hmm +511 -0
  44. data/data/hmm/protostomian_tackykinin.fa.hmm +760 -0
  45. data/data/hmm/tachykinin.fa.hmm +541 -0
  46. data/data/hmm/vertebrate_ghrelin_motilin.fa.hmm +382 -0
  47. data/data/raw_data/CRH_DH44.fa +44 -0
  48. data/data/raw_data/CRH_DH44.fa.aligned.fa +242 -0
  49. data/data/raw_data/Chordate_Glucagon_PACAP.fa +18 -0
  50. data/data/raw_data/Chordate_Glucagon_PACAP.fa.aligned.fa +72 -0
  51. data/data/raw_data/Chordate_Neurotensin_precursors_neurotensin_like_Ciona.fa +10 -0
  52. data/data/raw_data/Chordate_Neurotensin_precursors_neurotensin_like_Ciona.fa.aligned.fa +25 -0
  53. data/data/raw_data/Deutrostomian_tachykinin.fa +1283 -0
  54. data/data/raw_data/Deutrostomian_tachykinin.fa.aligned.fa +5707 -0
  55. data/data/raw_data/Gastrin_releasing_peptide.fa +12 -0
  56. data/data/raw_data/Gastrin_releasing_peptide.fa.aligned.fa +25 -0
  57. data/data/raw_data/GnRH.fa +22 -0
  58. data/data/raw_data/GnRH.fa.aligned.fa +66 -0
  59. data/data/raw_data/Hypocretin_orexin.fa +14 -0
  60. data/data/raw_data/Hypocretin_orexin.fa.aligned.fa +49 -0
  61. data/data/raw_data/Lophotrochozoan_luqin_arthropod_RYamide.fa +26 -0
  62. data/data/raw_data/Lophotrochozoan_luqin_arthropod_RYamide.fa.aligned.fa +91 -0
  63. data/data/raw_data/NPFF.fa +16 -0
  64. data/data/raw_data/NPFF.fa.aligned.fa +48 -0
  65. data/data/raw_data/NPS.fa +8 -0
  66. data/data/raw_data/NPS.fa.aligned.fa +24 -0
  67. data/data/raw_data/PTH.fa +24 -0
  68. data/data/raw_data/PTH.fa.aligned.fa +144 -0
  69. data/data/raw_data/Protostomian_Allatostatin_B.fa +17 -0
  70. data/data/raw_data/Protostomian_Allatostatin_B.fa.aligned.fa +120 -0
  71. data/data/raw_data/Protostomian_CCH_amide.fa +24 -0
  72. data/data/raw_data/Protostomian_CCH_amide.fa.aligned.fa +72 -0
  73. data/data/raw_data/Protostomian_Ecdysis_Triggering_Hormone.fa +24 -0
  74. data/data/raw_data/Protostomian_Ecdysis_Triggering_Hormone.fa.aligned.fa +84 -0
  75. data/data/raw_data/Protostomian_PDF.fa +16 -0
  76. data/data/raw_data/Protostomian_PDF.fa.aligned.fa +32 -0
  77. data/data/raw_data/Protostomian_allatostatin_C.fa +28 -0
  78. data/data/raw_data/Protostomian_allatostatin_C.fa.aligned.fa +56 -0
  79. data/data/raw_data/Protostomian_proctolin.fa +16 -0
  80. data/data/raw_data/Protostomian_proctolin.fa.aligned.fa +32 -0
  81. data/data/raw_data/Putative_chordate_Opioid.fa +8 -0
  82. data/data/raw_data/Putative_chordate_Opioid.fa.aligned.fa +32 -0
  83. data/data/raw_data/SIF.fa +28 -0
  84. data/data/raw_data/SIF.fa.aligned.fa +70 -0
  85. data/data/raw_data/TRH.fa +10 -0
  86. data/data/raw_data/TRH.fa.aligned.fa +50 -0
  87. data/data/raw_data/allatotropin.fa +31 -0
  88. data/data/raw_data/allatotropin.fa.aligned.fa +90 -0
  89. data/data/raw_data/ambulacrarian_amphioxus_NPS-like.fa +8 -0
  90. data/data/raw_data/ambulacrarian_amphioxus_NPS-like.fa.aligned.fa +24 -0
  91. data/data/raw_data/avp.fa +28 -0
  92. data/data/raw_data/avp.fa.aligned.fa +70 -0
  93. data/data/raw_data/calcitonin_DH31.fa +36 -0
  94. data/data/raw_data/calcitonin_DH31.fa.aligned.fa +126 -0
  95. data/data/raw_data/cholecystokinin_sulfakinin.fa +28 -0
  96. data/data/raw_data/cholecystokinin_sulfakinin.fa.aligned.fa +84 -0
  97. data/data/raw_data/chordate_OX26_QRFP.fa +10 -0
  98. data/data/raw_data/chordate_OX26_QRFP.fa.aligned.fa +25 -0
  99. data/data/raw_data/chordate_somatostatin_cortistatin_like.fa +10 -0
  100. data/data/raw_data/chordate_somatostatin_cortistatin_like.fa.aligned.fa +20 -0
  101. data/data/raw_data/f_type_SALMF.fa +118 -0
  102. data/data/raw_data/f_type_SALMF.fa.aligned.fa +590 -0
  103. data/data/raw_data/galanin.fa +93 -0
  104. data/data/raw_data/galanin.fa.aligned.fa +552 -0
  105. data/data/raw_data/kisspeptin.fa +16 -0
  106. data/data/raw_data/kisspeptin.fa.aligned.fa +0 -0
  107. data/data/raw_data/l_type_SALMF.fa +68 -0
  108. data/data/raw_data/l_type_SALMF.fa.aligned.fa +170 -0
  109. data/data/raw_data/nmu_pyrokinin.fa +18 -0
  110. data/data/raw_data/nmu_pyrokinin.fa.aligned.fa +63 -0
  111. data/data/raw_data/npy_npf.fa +20 -0
  112. data/data/raw_data/npy_npf.fa.aligned.fa +40 -0
  113. data/data/raw_data/protostomian_CCAP.fa +14 -0
  114. data/data/raw_data/protostomian_CCAP.fa.aligned.fa +42 -0
  115. data/data/raw_data/protostomian_allatostatinA_buccalin.fa +100 -0
  116. data/data/raw_data/protostomian_allatostatinA_buccalin.fa.aligned.fa +1350 -0
  117. data/data/raw_data/protostomian_leucokinin.fa +18 -0
  118. data/data/raw_data/protostomian_leucokinin.fa.aligned.fa +63 -0
  119. data/data/raw_data/protostomian_tackykinin.fa +504 -0
  120. data/data/raw_data/protostomian_tackykinin.fa.aligned.fa +2002 -0
  121. data/data/raw_data/tachykinin.fa.aligned.fa +13546 -0
  122. data/data/raw_data/vertebrate_ghrelin_motilin.fa +16 -0
  123. data/data/raw_data/vertebrate_ghrelin_motilin.fa.aligned.fa +32 -0
  124. data/lib/neurohmmer.rb +89 -0
  125. data/lib/neurohmmer/arg_validators.rb +71 -0
  126. data/lib/neurohmmer/hmmer.rb +71 -0
  127. data/lib/neurohmmer/output.rb +50 -0
  128. data/lib/neurohmmer/version.rb +4 -0
  129. data/neurohmmer.gemspec +34 -0
  130. data/spec/neurohmmer_spec.rb +11 -0
  131. data/spec/spec_helper.rb +2 -0
  132. data/template/contents.slim +55 -0
  133. metadata +269 -0
data/data/raw_data/Gastrin_releasing_peptide.fa ADDED
@@ -0,0 +1,12 @@
1
+ Uniprot_NMB_Hsap
2
+ MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQYRRLLVQILQK
3
+ >Ensembl_ENSDART00000098361_Drer
4
+ MADDGHCKYTLLFALIMLFNVSLSTSVSLDLTELRNKVSKIKVHPRGNLWATGHFMGKKSISNSQLQDSPFPVKPDRNIMGESGSSEDLKELITQEMLKIALQAQLEDPKRTRDVYNQVIREIFKELANRM
5
+ >Ensembl_ENSDART00000112743_ZEBRAFISH
6
+ MSSPSVSRFCCCGFLTYLVLFSFYISKTSSVSLDLTELRNKVAKIKVNPRGNLWATGHFMGKKSVVDSKHLPTEDESTMTAVEAALNARQVEPEDVFQEMLRVALQTHLDTRHIRPNVPETAILMKILESYIQDNK
7
+ >GRP_HUMAN
8
+ MRGRELPLVLLALVLCLAPRGRAVPLPAGGGTVLTKMYPRGNHWAVGHLMGKKSTGESSSVSERGSLKQQLREYIRWEEAARNLLGLIEAKENRNHQPPQPKALGNQQPSWDSEDSSNFKDVGSKGKGSQREGRNPQLNQQ
9
+ >gi_432152184_Bvar
10
+ MSAIPLNRILPLGFLLIFSFISLSSCMEFVEDPNNQGGLNLQQRLGNQWAVGHLMGKKSLQDTDFEEMESFAKRNVENMKAESERELRHAQLVVRNILEQYLKNMQN
11
+ >jgi_93381_Bflo
12
+ MKSGWYVAFVLFVAGLLAPSRADKGQEHWQYGHWYGKRDPSDVNNAQIDDVLRSHPELQQLLNKLMELPRRPKASSQMYTKYDDDYPDGDVSDSTKRVLEEPGSPYWKRVNEHVDRDYTSIIQRRSAKNPRVVQGHKVLKPKTNSFKRTIWDRFMARIFPAGED
data/data/raw_data/Gastrin_releasing_peptide.fa.aligned.fa ADDED
@@ -0,0 +1,25 @@
1
+ >Ensembl_ENSDART00000098361_Drer
2
+ MADD--------GHCKYTLLFALIMLFNVSLSTSVSLDLTELRNKVSKI--KVHPR-GNL
3
+ WATGHFMGKKSISNSQLQDSP-FPVKPDRNIMGESGSS---EDLK-ELITQEMLKIALQA
4
+ QLEDPKRTRDVYNQVIRE--------------IFKELANRM-------------------
5
+ -------------------------------
6
+ >Ensembl_ENSDART00000112743_ZEBRAFISH
7
+ MSSPSVSRFCCCGFLTYLVLFS----FYISKTSSVSLDLTELRNKVAKI--KVNPR-GNL
8
+ WATGHFMGKKSVVDSKHLPTE------DESTMTAVEAALNARQVEPEDVFQEMLRVALQT
9
+ HLD----TRHIRPNVPET------------AILMKILESYIQDN----------------
10
+ ------------------------------K
11
+ >GRP_HUMAN
12
+ MR----------GRELPLVLLA----LVLCLAP--RGRAVPLPAGGGTVLTKMYPR-GNH
13
+ WAVGHLMGKKSTGESS----------------SVSERGSLKQQLR-EYIRWEEAARNLLG
14
+ LIE-AKENRNHQPPQPKALGNQQPSWDSEDSSNFKDVGSKGKGS------QREGRNPQLN
15
+ Q-----------------------------Q
16
+ >gi_432152184_Bvar
17
+ MSAIPLNRILPLG---FLLIFS----F-ISLSS--CMEFVEDPNNQGGL--NLQQRLGNQ
18
+ WAVGHLMGKKSLQDTDFEEMESFAKRNVENMKAESE-----RELR-------------HA
19
+ QLV----VRNILEQ------------------YLKNMQN---------------------
20
+ -------------------------------
21
+ >jgi_93381_Bflo
22
+ MKS---------GWYVAFVLFV-------------AGLLAPSRADKG----------QEH
23
+ WQYGHWYGKRDPSDVNNAQI-------DDVLRSHPELQQLLNKLM-ELPRRPKASSQMYT
24
+ KYDDDYPDGDVSDSTKRVL--EEPG-----SPYWKRVNEHVDRDYTSIIQRRSAKNPRVV
25
+ QGHKVLKPKTNSFKRTIWDRFMARIFPAGED
data/data/raw_data/GnRH.fa ADDED
@@ -0,0 +1,22 @@
1
+ >Uniprot_GnRH_Hsap
2
+ MKPIQKLLAGLILLTWCVEGCSSQHWSYGLRPGGKRDAENLIDSFQEIVKEVGQLAETQRFECTTHQPRSPLRDLKGALESLIEEETGQKKI
3
+ >Uniprot_GnRH2_Hsap
4
+ MASSRRGLLLLLLLTAHLGPSEAQHWSHGWYPGGKRALSSAQDPQNALRPPGRALDTAAGSPVQTAHGLPSDALAPLDDSMPWEGRTTAQWSLHRKRHLARTLLTAAREPRPAPPSSNKV
5
+ >Ensembl_ENSPMAT00000011357_Pmar
6
+ MGRASLSLVLILWLLTAPPASLGQHWSHGWFPGGKRGVQEPPRASYENVSPSDGSPFTPVSSGLQVADWHVVCSRSPNGFSGCAMCCSPGCPTFLSQVLEASLGT
7
+ >Ghost_KH.S1051.1.v1.C.SL1-1_Cint
8
+ MLDIEKDELAALLQRENSAFRDILYHKNAGNFEKSDSGKFDSLKLQNNFPHLDLGLGVDLDAVDQWNRYKQANAQRMQNLGVPVNARQHWSYEFMPGGRRAVWENANVGVPVSRQHWSYEYMPGGRRSAGQHAMTKRQHWSKGYSPGGKRSVDLSEFDDQGRRITKHEGMPEEPFKVEQPRPRNGIHGPAGLDQNEPDWKNWMNEQPAASSDDKGSDVE
9
+ >Ghost_KH.C9.484.v1.A.SL1-1_Cint
10
+ MTSLVICILSLFVFLHVAQCHVLRNQEALGSFDWDEENPEVRPDFEDELPAESFQNLPSNNEERRQHWSYALSPGGKRQHWSLALSPGGKRQHWSNQLTPGGKRVIPRMREQKKADFDEINYTKIYNLLRQYLEAAAEYEKGDFGRYKGNQRNQLETIKDDIMTE
11
+ >Ghost_KH.S1104.4.v1.A.SL1-1_Cint
12
+ MHKISVCVLLVVLASIQSIEAQHWSNWWIPGAPGYNGGKRPLWKGKMEIRQNYRTTPRDHDVAEDSADEAFEHGDNSRDETAITMDDLLKKLAMIRQHEKDEQLLNAKIKNGLPRWENSKNRKLEFTVGLLMLRSAIFGPKLAGEWKQHFAVE
13
+ >ENSCSAVP00000006019_Csav
14
+ MKSVISLLSLLVIINVVYCHVLPNRGGQANFDWTRQKSDISPDFGADYPSDSSEEIPPLGANRRQHWSYALSPGGKRQHWSLALSPGGKRQHWSNKLAPGGKRVNPYSSAKANPVTDEENYNKLYNLLRQYIQAAIEFDDDLTGYKDDDVTLDNIEV
15
+ >GLEAN_19680_Spur
16
+ MKQIITSLVSISAALLLFVLISEYTPRCNGQVHHRFSGWRPGGKKRSDAAEVNSNKITIERPQLPICQTTEERQLLEGDSDILGDLRRAANRMRLLQLFNLSKTRLNDLNDATSNEVDERPVYGDYLGTGL
17
+ >Crz_Dmel
18
+ MLRLLLLPLFLFTLSMCMGQTFQYSRGWTNGKRSFNAASPLLANGHLHRASELGLTDLYDLQDWSSDRRLERCLSQLQRSLIARNCVPGSDFNANRVDPDPENSAHPRLSNSNGENVLYSSANIPNRHRQSNELLEELSAAGGASAEPNVFGKH
19
+ >AKH_Dmel
20
+ MNPKSEVLIAAVLFMLLACVQCQLTFSPDWGKRSVGGAGPGTFFETQQGNCKTSNEMLLEIFRFVQSQAQLFLDCKHRE
21
+ >F36H12.1_nlp-47_Cele
22
+ MQLYVVLCFLVLLGLSAGQMTFTDQWTKKRATLHKQLPVVTPEEPICPSDRVQAVFEQLDQLQKAQQRLTEYLASCAYPVEVPQKAEKM
data/data/raw_data/GnRH.fa.aligned.fa ADDED
@@ -0,0 +1,66 @@
1
+ >Uniprot_GnRH_Hsap
2
+ MKPIQKLLA----GLIL-------------------------------------------
3
+ ----------------------LTWCVEGCSSQHWSYGLRP------GGKRDAENLIDSF
4
+ QEIVKEVG-------------------QLAETQRFECTT---------------------
5
+ -HQPRSPLRD------LKGA----------------------------------------
6
+ ------------LESLIEEETGQ------------------------------KKI
7
+ >Uniprot_GnRH2_Hsap
8
+ MASSRRGLL-----LLL-------------------------------------------
9
+ ---------------------LLTAHLGPSEAQHWSHGWYP------GGKRALSSAQDP-
10
+ QNALRPPGRALDTA-------------AGSPVQTAHG----------------------L
11
+ PSDALAPLDD---SMPWEGRTTAQWSLHRKRHL------ARTLLTAAREPR---------
12
+ -PA-----PPS-SNKV----------------------------------------
13
+ >Ensembl_ENSPMAT00000011357_Pmar
14
+ MGRASLSLV-----LILWLLTAP-------------------------------------
15
+ ---------------------------PASLGQHWSHGWFP------GGKRGVQEP----
16
+ ---------------------------PRASYENVSPSD---------------------
17
+ -GSPFTPVSS--------GLQVADWH-----------------VVCSRSPNGFSGCAMCC
18
+ SPG-----CPTFLSQVLEASLGT---------------------------------
19
+ >Ghost_KH.S1051.1.v1.C.SL1-1_Cint
20
+ MLDIEKDEL----AALLQRENSAFRDILYHKNA-GNFEKSDSGKFDSLKLQNNFPHLDLG
21
+ LGVDLDAVDQWNRYKQANAQRMQNLGVPVNARQHWSYEFMP------GGRRAVWEN----
22
+ ANVGVPVSRQHWSYEYMPGGRRSAGQHAMTKRQHWSKGYS-PG-GKR-------------
23
+ -SVDLSEFDD-------QGRRITKHEGMPEEPF------------KVEQPRPRNGIH---
24
+ GPAGLDQNEPDWKNWMNEQPAAS----------SDDKGSD------VE--------
25
+ >Ghost_KH.C9.484.v1.A.SL1-1_Cint
26
+ MTSLVICIL-----SLFVFLHVAQCHVLRNQEALGSFDWDEENPEVRPDFEDELPAESF-
27
+ ---------------------QNLPSNNEERRQHWSYALSP------GGKRQHWSLALS-
28
+ ---------------------------PGGKRQHWSNQLT-PG-GKRVIPRM--------
29
+ -REQKKADFD---EINYTKI----------------------------------------
30
+ ------------YNLLRQYLEAA--AEYEKGDFGRYKGNQRNQLETIKDDIMTE--
31
+ >Ghost_KH.S1104.4.v1.A.SL1-1_Cint
32
+ MHKISVCVL----LVVL-------------------------------------------
33
+ ------------------------ASIQSIEAQHWSNWWIPGAPGYNGGKRPLWKGKMEI
34
+ RQNYRTTPRDHDVAEDS----------ADEAFEHGDNSR---------------------
35
+ -DETAITMDD-----LLKKLAMIRQHEKDEQLL--NAKIKNGL------PRWENS-----
36
+ ------------KNRKLEFTVGL--LMLRSAIFGPKLAGEWKQHFAVE--------
37
+ >ENSCSAVP00000006019_Csav
38
+ MKSV-ISLL-----SLLVIINVVYCHVLPNRGGQANFDWTRQKSDISPDFGADYPSDSS-
39
+ ---------------------EEIPPLGANRRQHWSYALSP------GGKRQHWSLALS-
40
+ ---------------------------PGGKRQHWSNKLA-PG-GKRVNPYS--------
41
+ -SAKANPVTD---EENYNKL----------------------------------------
42
+ ------------YNLLRQYIQAA--IEFDD-DLTGYKDDDVT-LDNIE-------V
43
+ >GLEAN_19680_Spur
44
+ MKQIITSLVSISAALLLFVLISEYTPR---------------------------------
45
+ ---------------------------CNGQVHHRFSGWRP------GGKKRSDAAEVNS
46
+ NKITIERPQLPICQ-------------TTEERQLLEGDSDILGDLRRAANRMRLLQLFNL
47
+ SKTRLNDLNDAT------------------------------------------------
48
+ ------------SNEVDERP-----------VYGDYLGTGL---------------
49
+ >Crz_Dmel
50
+ MLRL----------LLL-------------------------------------PLF---
51
+ ---------------------LFTLSMCMGQTFQYSRGWT-------NGKRSFNAASPLL
52
+ AN-----GHLHRASELGLT--------DLYDLQDWSSDR----RLERCLSQLQ----RSL
53
+ IARNCVPGSD------FNANRVDPDPENSAHPRLSNSNGENVLYSSANIPNRHRQ-----
54
+ ------------SNELLEELSAAGGASAEPNVFGKH--------------------
55
+ >AKH_Dmel
56
+ MNPKSEVLI---AAVLFMLLACVQCQL---------------------------------
57
+ -------------------------------------TFSP-----DWGKRSVGGAGPG-
58
+ ---------------------------TFFETQQGNCKT---------------------
59
+ ------------------------------------------------------------
60
+ ------------SNEMLLEIFRF--VQSQAQLFLDCKHRE----------------
61
+ >F36H12.1_nlp-47_Cele
62
+ MQLYVVLCF-----LVLLGLSAG-------------------------------------
63
+ ---------------------------QMTFTDQW------------TKKRATLHKQLP-
64
+ ---------------------------------------------------------VVT
65
+ PEEPICPSDR--VQAVFEQLDQLQKA----------------------------------
66
+ ------------QQRLTEYLASC--------------------AYPVEVPQKAEKM
data/data/raw_data/Hypocretin_orexin.fa ADDED
@@ -0,0 +1,14 @@
1
+ >Uniprot_HCRT_Hsap
2
+ MNLPSTKVSWAAVTLLLLLLLLPPALLSSGAAAQPLPDCCRQKTCSCRLYELLHGAGNHAAGILTLGKRRSGPPGLQGRLQRLLQASGNHAAGILTMGRRAGAEPAPRPCLGRRCSAPAAASVAPGGQSGI
3
+ >Ensembl_ENSDART00000104549_Drer
4
+ MDCTAKKLQVLVFMALLAHLARDVEGVASCCARAPGSCKLYEMLCRAGRRNDSSVARHLVHLNNDAAVGILTLGKRKVGESRVHDRLQQLLHNSRNQAAGILTMGKRLEEPAKFLIPTVPQDVDSYEKR
5
+ >jgi_66903_Bflo
6
+ MRCMHVLLAVLFVGLLCKGSWAFPRCCWRRTCNCPHFRRLFGPRNHGHGILTVGKRQRGEGEYKSLPRGEHDPSHGGLPTSLVDLHDRAQVDLDRLEGLPELTLDHDYRQMRCMHVLLAVLFVGLLCKGSWAFPRCCWRRTCNCPHFRRLFGPRNHGHGILTVGKRQRGEGEYKSLPRGEHDPSHGGLPTSLVDLHDRAQVDLDRLEGLPELTLDHDYSERKNQLEHSKVWELLHHLRRLLNLTAEADARSRRRQTELQPYETTPRHWQISMRR
7
+ >jgi_scaffold_1000_Bflo
8
+ MAGRQVAVAVLVVAMLFRCRAQKPACCESGSCICPYVSRLHSPGNHGYGILTTGKRQWRHGPATLSPDQLVTASHGQGVPVLEGSDR
9
+ >jgi_Contig31345_Skow
10
+ MRTTIMLIFSAVLVAVLFTHTSAQPQCCRGVGCKIPPNCKCPFQSIICDNPTKNVLTAGKRNYLPISKSNELSTYQRPVSDAKTNVVTSDDIVNLIRSSPSLIRKIVKAIDLNGDDMISKAELQSLVYD
11
+ >BCM_Contig9884_Spur
12
+ MRLERLCSIVVLVIAACCLLVRGQSPCCRRAKGCSFPPGCHCPLKMSFCGDPSRGLQIVGKKSDTSYTGGYSTTNLQKYDYHPADREYVKHDR
13
+ >BCM_Contig134164_Spur
14
+ MNRGVPSQIPRVLLAISLVLLVCLPEISHADRACCKRTVGCNLRSDCTCRIREITCTDPSLGLQNYGKRSPARSPTYYDSYTPILERIAELASLQQDDRWKRKRSSSSSSRYPFYDYNMRPF
data/data/raw_data/Hypocretin_orexin.fa.aligned.fa ADDED
@@ -0,0 +1,49 @@
1
+ >Uniprot_HCRT_Hsap
2
+ MN------LPSTKVSWAAVTLLLLLLLLPPALLSSGAAAQPLP-----DCCRQK------
3
+ -TCSCRLYELLHGAG----------------NHAAGILTLGKRRSGPPG-----------
4
+ -----------LQGRLQ-------------------------------------------
5
+ --------------RLLQASGNHAAGILTMGRRAGAE------------------PAP--
6
+ RPCLG----RRCSAPAAASVAPGGQSGI--------------------------------
7
+ ---------------------------------------
8
+ >Ensembl_ENSDART00000104549_Drer
9
+ MD------CTAKKLQ----VLVFMALLAHLARDVEGVAS----------CCARA------
10
+ -PGSCKLYEMLCRAGRRNDSSVARHLVHLNNDAAVGILTLGKRKVGESR-----------
11
+ -----------VHDRLQ-------------------------------------------
12
+ --------------QLLHNSRNQAAGILTMGKRL-EE------------------PAKFL
13
+ IPTVP----QDVDSYEKR------------------------------------------
14
+ ---------------------------------------
15
+ >jgi_66903_Bflo
16
+ MR------CMHVLLA----VLFVGLLC-------KGSWAFPR-------CCWRR------
17
+ -TCNCPHFRRLFGPR----------------NHGHGILTVGKRQRGEGEYKSLPRGEHDP
18
+ SHGGLPTSLVDLHDRAQVDLDRLEGLPELTLDHDYRQMRCMHVLLAVLFVGLLCKGSWAF
19
+ PRCCWRRTCNCPHFRRLFGPRNHGHGILTVGKRQRGEGE------------YKSLPRGEH
20
+ DPSHGGLPTSLVDLHDRAQVDLDRLEGLP------ELTLDHDYSERKNQLEHSKVWELLH
21
+ HLRRLLNLTAEADARSRRRQTELQPYETTPRHWQISMRR
22
+ >jgi_scaffold_1000_Bflo
23
+ MA------GRQVAVA----VLVVAMLF-------RCRAQKPA-------CCESG------
24
+ -SCICPYVSRLHSPG----------------NHGYGILTTGKRQ----------------
25
+ ------------------------------------------------------------
26
+ ----WR----------------HGPATLS--------------------------PDQLV
27
+ TASHG----QGVPV----------LEGSD-------------------------------
28
+ --------------------------------------R
29
+ >jgi_Contig31345_Skow
30
+ MR------TTIMLIF---SAVLVAVLF-------THTSAQPQ-------CCR-GVGCKIP
31
+ PNCKCPFQSIICD------------------NPTKNVLTAGKRN----------------
32
+ -YLP-------ISKSNE-------------------------------------------
33
+ ---------------------------LSTYQRPVSDAKTNVVTSDDIVNLIRSSPS---
34
+ --------------LIRKIVKAIDLNGDDMISKAELQSLVYD------------------
35
+ ---------------------------------------
36
+ >BCM_Contig9884_Spur
37
+ MR------LERLCSI---VVLVIAACC----LLVRGQSP----------CCRRAKGCSFP
38
+ PGCHCPLKMSFCG------------------DPSRGLQIVGKKS--------------DT
39
+ SYTGGY-----STTNLQ--------------KYDYH------------------------
40
+ -------------------------------------------------------PAD--
41
+ -----------------------------------REYVKHD------------------
42
+ --------------------------------------R
43
+ >BCM_Contig134164_Spur
44
+ MNRGVPSQIPRVLLA---ISLVLLVCL-------------PEISHADRACCKRTVGCNLR
45
+ SDCTCRIREITCT------------------DPSLGLQNYGKRSPARSP-------TYYD
46
+ SYTPILERIAELASLQQ----------------DDR------------------------
47
+ ----WKR------------------------KRSSSSSS--------------RYP----
48
+ ---------------------------------------FYDYNMR--------------
49
+ -------------------------------------PF
data/data/raw_data/Lophotrochozoan_luqin_arthropod_RYamide.fa ADDED
@@ -0,0 +1,26 @@
1
+ >gi_163510328_Lgig
2
+ MKLSEMIMCIMAVLLVTITLGNGAPQWRPQGRFGKRVNPTLSLLLHGDQEKQFLNHEKPFISEDKPYIPEVTDEISVERLTSDARDNLSKFLHRLCSESGLENVPRCSWSRKTSERSSDPIRLI
3
+ >gi_144925775_Lstag
4
+ MISTCCVLSVIFSLCYATPHWRPQGRFGKRTTEDDNVPDFGISRPQDIPIELMFSKNELSRRNSKPRLCSTSGVAGYPPCDAQVNAMQVATLGEPQDLANLFDL
5
+ >jgi_213930_Ctel
6
+ MSKLIIMGILSAILALLSITPSSAEGQFAWRPQGRFGKRMDSTPVNSLDNAGVARNPGFWSIVCNCIYNQKRKQKMVEMSSMLHAWAISTLRMISNINLAFGDLVVHNAWVKPAFFFDPDWWNAIYGGTMD
7
+ >gi_223786475_Apom
8
+ MATFRAIVMGLASLILSLLILTQPSEQQYAWRPQGRFGKRDNYLARGILSGPSLDTSNKIKMLSTHMFESNGVLCVSAGSRGLYRCFTVNPVPGSSSPVSMANTPFIEVGDVLCVSVAEIGAYRCFQLDDHEVPEQSLTNH
9
+ >gi_194267062_Iobs
10
+ MMELMLVACVLVVMTSLLQPTAATPSWKPQGRFGKRGGPSDYLGIQKKPHGWRPQGRFGKRSLASSSSPSSSSFEQSIDAELLKSAAVSGAIEVPVELLSTGENGMFLRLGVKPCSITGMDGIPPCTGASEGASETF
11
+ >jgi_251691_Dpul
12
+ MARKESVFWLFCTLALMMSVVLVDAQTFFTNGRYGKRSEVRSRVASRSADERFFGGPRFGRSGNGGIVLGNSELDARNPERFFIGSRYGKRSEMEQIVPSPQVDESTSNSQEKETFLECNPIGIEQLYHCIERLKSAHHFDLMQHQQV
13
+ >BCM_GLEAN_08650_Tcas
14
+ MHARKLIVVLVYILTVLVSVAVSKRYTSEKRVQNLATFKTMMRYGRGGPSPNNKENKVNIRPRADAFFLGPRYGKRSGWSPNASLVYPVSTPLCGLDEDLSCAYTGISDLYRCTPRKGESEEFTTSSN
15
+ >gi_268286147_Dpon
16
+ MLVRKVPVIFVFLVSIFITVVNADMESIKRIPSHSFKQMMRYGRSSANNEKINVNPRADLFYLGPRYGKRAGPTLAKLDTVYDSTFMPCTYTGVADLYRCDTSRSTMREDRRK
17
+ >gi_18866372_Agam
18
+ MTRRTVQPLAREQSSSSSSSFLFSCISTTVALVLFGALVLAAVADADPMVDSASSLYGDNKHASDKRPFFVGSRYGRSHVYGAKDMRQVNVVPRNDRFFLGSRYGKRSDLTKEIESDNNNGIAELTYLACLHTGVSNLYRCYSRDSSSNALHQQETEQFDQ
19
+ >gi_156462907_Isca
20
+ MLHCRAWAVALIALLVLSVASAAKGTPQFVPNGRYGRRSVTPPLAGVSKDITVNFFGDSTISCTHTGFADIYRCTRKTSDDYKDSSFE
21
+ >Ensembl_FBtr0310523_NepY_Dmel
22
+ MNECVNKLLHLKFLFYFILGIQKRPVFFVASRYGRSTTYDESLKSRRIFIVPRNEHFFLGSRYGKRSGKYLCLSREINKLIVRKRLRNNDKERTPTLSFITKHFLMRNT
23
+ >gi_BQ542910_Tspi
24
+ MDLKIKIRIIFFLIGMALFSEAKPASLARYGRAALPRYGKRAELISGLDAMRDEVTEFKNSPCVYTGYEDLYRCSSMT
25
+ >Ensembl_Y75B8A.11_Cele
26
+ MLTRVPVLILAVIVMLALCQEPEKPEKRPALLSRYGRAVLPRYGKRSGNLMESSQNSLTEESSDVVCQLIDGKYICLPVDAGFLGEVNGSIKQNSKTKCPAFFKNVSFSLFFRAFYLTVPACTSKKNVLLTSTTSTINHQKLEPATTLSPIRQRRRCLFQIDFAYLTVCPSKCQEGTDTGKVADYLLSLGCSDMDVIEREMKRVCCPE
data/data/raw_data/Lophotrochozoan_luqin_arthropod_RYamide.fa.aligned.fa ADDED
@@ -0,0 +1,91 @@
1
+ >gi_163510328_Lgig
2
+ M--------------------KLSEMIMCIMAVLLVTITLGN------------------
3
+ -----GAPQWRPQG--------------------------------------------RF
4
+ GKRVNPTLSLLLHGDQEKQFLNHEKPFISED----KPYIPEVTDEISVERLTSD------
5
+ -------ARDNLSKFLHRL-----------------------CSE---------------
6
+ ------SGLENVP---RCSW----------------SRKTSERSS---------------
7
+ ----------------------------D----PI--------RLI
8
+ >gi_144925775_Lstag
9
+ M------------------------ISTCCVLSVIFSLCYAT------------------
10
+ -------PHWRPQG--------------------------------------------RF
11
+ GKRTTEDDNVPDFG-------------------------ISRPQDIPIELM---------
12
+ ---F---SKNELSRRNSKP---------------------RLCST---------------
13
+ ------SGVAGYP---PCDA----------------QVNAMQVATL-----GEPQDLAN-
14
+ --------------------------LFD----------------L
15
+ >jgi_213930_Ctel
16
+ M-------------------SKLIIMGILSAILALLSITPSSA-----------------
17
+ ----EGQFAWRPQG--------------------------------------------RF
18
+ GKRMDS---------------------------------------TPVNSLDNAGV----
19
+ -------ARN--------------------------------------------------
20
+ ------PGFWSIVC--NCIY------------NQKRKQKMVEMSSMLHAWAISTLRMISN
21
+ INLAFGDLVVHNAWVKPA-------FFFD----PDWWNAIYGGTMD
22
+ >gi_223786475_Apom
23
+ MAT-----------------FRAIVMGLASLILSLLILTQPS------------------
24
+ ----EQQYAWRPQG--------------------------------------------RF
25
+ GKRDNYLARGILSG-------------------------PSLDTSNKIKMLSTHMF----
26
+ -------ESNGVL-----------------------------CVS---------------
27
+ ------AGSRGLY---RCFT-----------------VNPVPGSS-------SPVSMANT
28
+ PFIEVGDVLC----VSVAEIGAYRCFQLDDHEVPE-----QSLTNH
29
+ >gi_194267062_Iobs
30
+ M---------------------MELMLVACVLVVMTSLLQPTA-----------------
31
+ -----ATPSWKPQG-----------RFGKRGGPSDYLGIQKKPHGWRPQG--------RF
32
+ GKRSLASSSSPSSSSFEQ----------SIDAELLKSAAVSGAIEVPVELLSTG------
33
+ -------ENGMFLRLGVKP-----------------------CSI---------------
34
+ ------TGMDGIP---PCTG-------------------ASEGAS---------------
35
+ -------------------------------------------ETF
36
+ >jgi_251691_Dpul
37
+ MAR------------------KESVFWLFCTLALMMSVVLVDAQ----------TFFTNG
38
+ RYGKRSEVRSRVASRSADERFFGGPRFGRSGNGGIVLGNSE----LDARNPERFFIGSRY
39
+ GKRSEM------------------------------------EQIVPSPQVDES------
40
+ -------TSNSQEKETFLE-----------------------CNP---------------
41
+ ------IGIEQLY---HCIE---------------------------RLKSAHHFDLMQ-
42
+ ------------------------------------------HQQV
43
+ >BCM_GLEAN_08650_Tcas
44
+ ----------------------MHARKLIVVLVYILTVLVSVA-----------------
45
+ -VSKRYTSEKRVQNL---ATFKTMMRYGRGGP---SPNNKENKVNIRPRA-DAFFLGPRY
46
+ GKRSGWSPNASLVY----------------------------PVSTPLCGLDEDLS----
47
+ ------------------------------------------CAY---------------
48
+ ------TGISDLY---RCTP---------------RKGESEEFTT---------------
49
+ -------------------------------------------SSN
50
+ >gi_268286147_Dpon
51
+ ----------------------MLVRKVPVIFVFLVSIFITV------------------
52
+ -VNADMESIKRIPS----HSFKQMMRYGRS-----SANNE--KINVNPRA-DLFYLGPRY
53
+ GKRAGPT----------------------------------------LAKLDT-------
54
+ -----------VYDSTFMP-----------------------CTY---------------
55
+ ------TGVADLY---RCDT-----------SRSTMREDRRK------------------
56
+ ----------------------------------------------
57
+ >gi_18866372_Agam
58
+ MTRRTVQPLAREQSSSSSSSFLFSCISTTVALVLFGALVLAAVADADPMVDSASSLY---
59
+ -GDNKHASDKRP--------FFVGSRYGRSHVY--GAKDMR-QVNVVPRN-DRFFLGSRY
60
+ GKRSDL-----------------------------------------TKEIESD------
61
+ -------NNNGIAELTYLA-----------------------CLH---------------
62
+ ------TGVSNLY---RCYS-----------------RDSSSNAL--HQQETEQFD----
63
+ ---------------------------------------------Q
64
+ >gi_156462907_Isca
65
+ M---------------------LHCRAWAVALIALLVLSVAS------------------
66
+ --AAKGTPQFVPNG--------------------------------------------RY
67
+ GRRSVT------------------------------PPLAGVSKDITVNFFGD-------
68
+ ---------STIS-----------------------------CTH---------------
69
+ ------TGFADIY---RCTR---------------KTSDDYKDSSF--------------
70
+ ---------------------------------------------E
71
+ >Ensembl_FBtr0310523_NepY_Dmel
72
+ MNE-----------------CVNKLLHLKFLFYFILGI----------------------
73
+ --------QKRP-------VFFVASRYGRSTTYDESLKSRR--IFIVPRN-EHFFLGSRY
74
+ GKRSGK------------------------------------------------------
75
+ ----------------------------------------YLCLS---------------
76
+ ------REINKLIVRKRLRN-----------------NDKERTPT--LSFITKHFLMRN-
77
+ ---------------------------------------------T
78
+ >gi_BQ542910_Tspi
79
+ MDL------------------KIKIR----IIFFLIGMALFS------------------
80
+ --------EAKPASL---------ARYGRAAL-------------------------PRY
81
+ GKRAEL-----------------------------------------ISGLDA-------
82
+ -------MRDEVTEFKNSP-----------------------CVY---------------
83
+ ------TGYEDLY---RCSS----------------------------------------
84
+ --------------------------------------------MT
85
+ >Ensembl_Y75B8A.11_Cele
86
+ M--------------------LTRVPVLILAVIVMLALCQEP------------------
87
+ -----EKPEKRPALL---------SRYGRAVL-------------------------PRY
88
+ GKRSGNLMESSQNS------------------------LTEESSDVVCQLIDGKYICLPV
89
+ DAGFLGEVNGSIKQNSKTKCPAFFKNVSFSLFFRAFYLTVPACTSKKNVLLTSTTSTINH
90
+ QKLEPATTLSPIRQRRRCLFQIDFAYLTVCPSKCQEGTDTGKVADYLLSLGCSDMDVIER
91
+ ---EMKRVCC-----------------------P-----------E
data/data/raw_data/NPFF.fa ADDED
@@ -0,0 +1,16 @@
1
+ >Uniprot_RFRP_Hsap
2
+ MEIISSKLFILLTLATSSLLTSNIFCADELVISNLHSKENYDKYSEPRGYPKGERSLNFEELKDWGPKNVIKMSTPAVNKMPHSFANLPLRFGRNVQEERSAGATANLPLRSGRNMEVSLVRRVPNLPQRFGRTTTAKSVCRMLSDLCQGSMHSPCANDLFYSMTCQHQEIQNPDQKQSRRLLFKKIDDAELKQEK
3
+ >Uniprot_NPFF_Hsap
4
+ MDSRQAAALLVLLLLIDGGCAEGPGGQQEDQLSAEEDSEPLPPQDAQTSGSLLHYLLQAMERPGRSQAFLFQPQRFGRNTQGSWRNEWLSPRAGEGLNSQFWSLAAPQRFGKK
5
+ >Ensembl_ENSMUSP00000023814_Mmus
6
+ MDSKWAALLLLLLLLLNWGHTEEAGSWGEDQVFAGEDKGPHPPQYAHIPDRIQTPGSLFRVLLQAMDTPRRSPAFLFQPQRFGRSAWGSWSKEQLNPQARQFWSLAAPQRFGKK
7
+ >Ensembl_ENSORLP00000006177_Olat
8
+ MDTAAAMTLLALIVALAGISQALHVQDSLGKNDILPGSSEENVADRLLRLRETRESVLHQPQRFGRSSRGQVVSDDQIQARDWEAAPGQIWSMAVPQRFGKK
9
+ >Ensembl_ENSDART00000066179_Danio_rerio
10
+ MDAGVWFMLVGVLLVMADQSRSITQDEALEQNKRLLEEDEEQDNMLERPGAAQMNGLLEDRLLVEMLRSLLHGSQRYERNPSVLHQPQRFGRGARSGLSTEERIQSRDWETVPGQIWSMAVPQRFGKK
11
+ >jgi_596067_Trub
12
+ MDTSALVTLLALVVAMTSVSRALHIQDVLDKEDLPGSEEKMADSMLEMRETRNSVLHQPQRFGRNSKGQVMLENEIHPRDWEGAPGQVWSMAVPQRFGRK
13
+ >Ensembl_ENSPMAP00000004221 _Pmar
14
+ MEAKAVSAMLLLALANCVLVSAARGSFSSMEEAAMPDSDSSLTKDYLAESVHEDPYRDSFDRASPDAAGSSSSEQLLLSRLARAFMHFPQRFGRAGPSSLFQPQRFGRGSNDDEEVPPSLFYRRSWGAPAEKFWMRAMPQRFGRKK
15
+ >NPFF_AMPHIOXUS_Brafl1_112219
16
+ MGIFALMVVTLVVSQSGATPSSSEWKRSLYHFVSPEESDGSNEFPSHQRFTLRPDSSDESEAERVDRMSRAAAASLFRPPNRFGRSPAVWLDSPNRFGRSARFSVPFDIPRRFGRGFSLDSDVPRRFGRAGEEETPKRSWSMLSFQRPFRFGRAIATSNV
data/data/raw_data/NPFF.fa.aligned.fa ADDED
@@ -0,0 +1,48 @@
1
+ >Uniprot_RFRP_Hsap
2
+ MEIISSKLFILLTLATSSLLTSNI-----FCADELVISNLHSKENYDKYSEPRG-----Y
3
+ PKGERSLNFE-ELKDWGPKNVIKMSTPAVNKMPHSFANLPLRFGRNVQEERSAGAT-ANL
4
+ PLRSGRNMEVSLVRRVP------------------------------------NLPQRFG
5
+ RTTTAKSVCRMLSDLCQGSMHSPCANDLFYSMTCQHQEIQNPDQKQSRRLLFKKIDDAEL
6
+ KQEK
7
+ >Uniprot_NPFF_Hsap
8
+ MDSRQAAALLVLLL---------------LIDGGCAEGPGGQQEDQLSAEEDSE------
9
+ PLPPQ---------DA----------QTSGSLLHYLLQAMERPGR-------SQAF-LFQ
10
+ PQRFGRNTQGS-------------WRNEWLSP-----RAGEGLNSQFWSL---AAPQRFG
11
+ KK----------------------------------------------------------
12
+ ----
13
+ >Ensembl_ENSMUSP00000023814_Mmus
14
+ MDSKWAALLLLLLL---------------LLNWGHTEEAGSWGEDQVFAGEDKG------
15
+ PHPPQ---YA-HIPDR---------IQTPGSLFRVLLQAMDTPRR-------SPAF-LFQ
16
+ PQRFGRSAWGS-------------WSKEQLNP----------QARQFWSL---AAPQRFG
17
+ KK----------------------------------------------------------
18
+ ----
19
+ >Ensembl_ENSORLP00000006177_Olat
20
+ MDTAAAMTLLALIV---ALAGISQ---------ALHVQDSLGKNDILPGSSEEN------
21
+ ---------------------------VADRLLRL---------RE-----TRESV-LHQ
22
+ PQRFGRSSRGQV------------VSDDQIQA-----RDWEAAPGQIWSM---AVPQRFG
23
+ KK----------------------------------------------------------
24
+ ----
25
+ >Ensembl_ENSDART00000066179_Danio_rerio
26
+ MDAGVWFMLVGVLL---VMADQSR---------SITQDEALEQNKRLLEEDEEQDNMLER
27
+ PGAAQ---MNGLLED-----------RLLVEMLRSLLHGSQRYER-------NPSV-LHQ
28
+ PQRFGRGARSGL------------STEERIQS-----RDWETVPGQIWSM---AVPQRFG
29
+ KK----------------------------------------------------------
30
+ ----
31
+ >jgi_596067_Trub
32
+ MDTSALVTLLALVV---AMTSVSR---------ALHIQDVLDKED-LPGSEEK-------
33
+ ---------------------------MADSMLEM---------RE-----TRNSV-LHQ
34
+ PQRFGRNSKGQV------------MLENEIHP-----RDWEGAPGQVWSM---AVPQRFG
35
+ RK----------------------------------------------------------
36
+ ----
37
+ >Ensembl_ENSPMAP00000004221 _Pmar
38
+ MEAKAVSAMLLLALANCVLVSAARGSFSSMEEAAMPDSDSSLTKDYLAESVHED------
39
+ PYRDS---FDRASPDAAGSSSSE--QLLLSRLARAFMHFPQRFGR------AGPSS-LFQ
40
+ PQRFGRGS----------------NDDEEVPPSLFYRRSWGAPAEKFWMR---AMPQRFG
41
+ RK----------------------------------------------------------
42
+ ---K
43
+ >NPFF_AMPHIOXUS_Brafl1_112219
44
+ M---GIFALMVVTL----VVSQSG---------ATPSSSEWKRSLYHFVSPEESDGSNEF
45
+ PSHQR---FT-LRPDSSDESEAERVDRMSRAAAASLFRPPNRFGR-------SPAVWLDS
46
+ PNRFGRSARFSVPFDIPRRFGRGFSLDSDVPRR-FGRAGEEETPKRSWSMLSFQRPFRFG
47
+ RAIATSNV----------------------------------------------------
48
+ ----
data/data/raw_data/NPS.fa ADDED
@@ -0,0 +1,8 @@
1
+ >Uniprot_NPS_Hsap
2
+ MISSVKLNLILVLSLSTMHVFWCYPVPSSKVSGKSDYFLILLNSCPTRLDRSKELAFLKPILEKMFVKRSFRNGVGTGMKKTSFQRAKS
3
+ >Ensembl_ENSMODT00000042215_Mdom
4
+ MTSSVRLNLFLVLWISSMRMLCCYPTPSAMLSEKSDYFLILLNSCLAAMDRSEELAFLKPFLVKNAMKRSFRNGVGSGMKKTSFRRAKS
5
+ >Ensembl_ENSGALT00000041356_Ggal
6
+ MISLCRLNLLFILWMSAMFVCSGYPVGPSMNCQLYGKSDYCLVLLNSCLAKVGRSEEVALLEPHLEMPFNKRSFRNGVGSGIKKTSFRRAKS
7
+ >jgi_84803_Bflo
8
+ MMQTPIFLCSVVLVGAVCGQLSETNNFPQNGNRRLSPERSATVLRQFLHLEGAVGSPVSPSDGRALETGDKRSFRNGVGKRRDSEEERLPQNRGATELKAEATIFSQNGDPHDEGAKAASEKRSFRNGVGKRTHFRIVADASLGGLDEPEALRQTGGDANSPSLSRDLWAEVQGKDDEQCPACGSDGSGVCVLKGVCCRLDSGCVLRKDVCSSLPDRALCASLQYSATCRTDGKCVAPGVCCRAADHSCFLDPECD
data/data/raw_data/NPS.fa.aligned.fa ADDED
@@ -0,0 +1,24 @@
1
+ >Uniprot_NPS_Hsap
2
+ MISSVKLNLILVLSLSTMHVFWCYPVPSSK---VSGKSDY-------------------F
3
+ LILLNSCPTRLDRSKELAF-------------------------------LK--------
4
+ ---PILE---KMFVKRSFRNGVGTGMKKTSFQ----------------------------
5
+ ------------------------------------------------------------
6
+ ------------------RAKS----------
7
+ >Ensembl_ENSMODT00000042215_Mdom
8
+ MTSSVRLNLFLVLWISSMRMLCCYPTPSAM---LSEKSDY-------------------F
9
+ LILLNSCLAAMDRSEELAF-------------------------------LK--------
10
+ ---PFLV---KNAMKRSFRNGVGSGMKKTSFR----------------------------
11
+ ------------------------------------------------------------
12
+ ------------------RAKS----------
13
+ >Ensembl_ENSGALT00000041356_Ggal
14
+ MISLCRLNLLFILWMSAMFVCSGYPVGPSMNCQLYGKSDY-------------------C
15
+ LVLLNSCLAKVGRSEEVAL-------------------------------LE--------
16
+ ---PHLE---MPFNKRSFRNGVGSGIKKTSFR----------------------------
17
+ ------------------------------------------------------------
18
+ ------------------RAKS----------
19
+ >jgi_84803_Bflo
20
+ MMQ------------TPIFLCSVVLVGAVC-GQLSETNNFPQNGNRRLSPERSATVLRQF
21
+ LHLEGAVGSPVSPSDGRALETGDKRSFRNGVGKRRDSEEERLPQNRGATELKAEATIFSQ
22
+ NGDPHDEGAKAASEKRSFRNGVG---KRTHFRIVADASLGGLDEPEALRQTGGDANSPSL
23
+ SRDLWAEVQGKDDEQCPACGSDGSGVCVLKGVCCRLDSGCVLRKDVCSSLPDRALCASLQ
24
+ YSATCRTDGKCVAPGVCCRAADHSCFLDPECD
data/data/raw_data/PTH.fa ADDED
@@ -0,0 +1,24 @@
1
+ >Uniprot_PTHY_Hsap
2
+ MIPAKDMAKVMIVMLAICFLTKSDGKSVKKRSVSEIQLMHNLGKHLNSMERVEWLRKKLQDVHNFVALGAPLAPRDAGSQRPRKKEDNVLVESHEKSLGEADKADVNVLTKAKSQ
3
+ >Uniprot_PTHLH_Hsap
4
+ MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFLHHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSR
5
+ >Ensembl_ENSDART00000049154_Drer
6
+ MRMLCCRRVLQQWVFALFLLCSPVPHHGRPVDALSSRMKRSVTHAQLMHDKGRTLQDFKRRMWLQELLHEVHTAEIREAQQPRGGVSISSGAGGGVGAGVSITLPAGVGVSTGAGTAHPKPAGGTKNLPIGFGLEDEEGTNLPQETHKSQNYKDNMMKGIRRKKKSRTGKRREGEKRKRRARSLQEFSSGVHLQPYSC
7
+ >Ensembl_ENSDART00000125151_Drer
8
+ MLRHWGFAVFLLTIPIPIQSRATNAPSSRQRRSVGHAQMMHDRSRSLHDRKRRMWLQDLLEQVHTAQVWDSPNQSEGSVQTLSWPRPKHTGSTKNIPLGYQMESIGTRDDLPQETSKSLTYEEQPLKAAMKRKSKMCLGRWRERDRRRDRACAFQMQMHMRE
9
+ >gi_190336776_Drer
10
+ MLLIRCLEKAMLIIVLWSLCSFLFLEGLPISKRSISEVQLMHNVREHKEMLDRQDWLQLKLNNIIIPSVNDSQKERKGKTNGPSVKRLRKGEGATWSFY
11
+ >gi_47086134_Drer
12
+ MVSINGNLLKRVIFVTVFILLFSTNAESRPLRSKRAVNEVQLMHNLGVHKHVELRQDWLQMKLRGIHTASVKNTDIIPELKELYPGEAEEIMAVLEKLMNPS
13
+ >Uniprot_PTH2_TIP39_HUMAN
14
+ METRQVSRSPRVRLLLLLLLLLVVPWGVRTASGVALPPVGVLSLRPPGRAWADPATPRPRRSLALADDAAFRERARLLAALERRHWLNSYMHKLLVLDAP
15
+ >Ensembl_ENSDART00000033691_Drer
16
+ MALSLPPRPALLFLVLMSVTLMASAFPQPQLRPLQSNLPAIGQEDSKGEQWEVVYPSISLRDWSIQMLTAPDFGAAKTGREQLVADDWLPLSQSQMEEELVKGWTGDWPSRVGHQQKRNIVVADDAAFREKSKLLTAMERQKWLNSYMQKLLVVNSK
17
+ >Ghost_ORF_0_KH.C4.592.v1.A.ND1-1_Cint
18
+ MKITETMIAFVVIFCVTSSCFGKSISKVSSNDLNEKANGHSIVKRQSNADLNLQNKKTRHMNELIRQYYISSILNEIKGKRDQRQPLTADEKATACRHAVQYCRVGQVEEDNGATYLVDQKRDIENGYPDMDNTEQNNSVPNEPCLSVSAIAKLLTNSRGNSANQRTIDTSQNGHTDGETFDMYTNGQKDLASHLFQFFQDQYDLTQ
19
+ >jgi_130114_Bflo
20
+ MPRLHHLYLAANVLLVAMVILTKVTSSAGLPTANQKPLTRRSITDVTMTEERTRDMISRARQAWLTALVDEILLPEGANSKRSAIDTMADHRLAHDTQTAWRRHLLRYLVTADPSISFPQRPSKRQITDRTMTEERSRDLVDRARQAWISSLVDEIVEASGTSKRQITDVDVTSDHSKAFTDRERTAWLHRLLNAVQGQ
21
+ >jgi_69477_Bflo
22
+ MAAYTTCSLAGAVAAAALALVLVAGQTAGASALRLQQQAGRENNGSPNFDVLYQPRDPATRDDLRRLYGVLRQILSPAQHGGPFASGSKVRRTGLTDVTLLNERHGDLNERARVAWLRFLLGGIDPDASEALASEEED
23
+ >jgi_129571_Bflo
24
+ MTPLMVMMTMFFTGVLATTPAHYSNQDMKDFAVVKFHTARGRDNTTSLIRRLFDAAADMNGEGNAEKRQAERLIGAHLGETMDSSDRREHLSKLLADITGESISANCWQTSRVWRNARQSGSSELISEKPWTPPRGESTSADCWQISRVWRNAKRSDSSEHISEKPWTPEQERDLSKLLADITGMEKRQAERLVGAHLGETMDSSTGESISANCWQTSRVWRNARRRGSSEHISEKPWTPPTGESISANCWQTSRVWKNGKQSDSSELISEKPWTPGRRESLSELLADITGMEKRQAERLVGAHLEETMDSADRREHLGQLLSALTGGMRKRQAEVVVGSAQGGTLESLQRERFLSELLSTIEGEKGKRQAERLVGAHLGETMDSSGRRDHLSQLLSHITGGIGKRQAELLVGAELGDAVDASERRERLDALLSSITGHLGKRQAGMVEGTGRGDAMGTGERRGRLSGLMSSITDGVGKRQAEVLVGAELGDAVDAEERRERLSALLSSITGGVGKRLAEVTVGAHRGTAADDKKHRQMINALVAKITG