neurohmmer 0.1.0

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Files changed (133) hide show
  1. checksums.yaml +7 -0
  2. data/.gitignore +35 -0
  3. data/CODE_OF_CONDUCT.md +13 -0
  4. data/Gemfile +4 -0
  5. data/LICENSE +662 -0
  6. data/README.md +136 -0
  7. data/Rakefile +17 -0
  8. data/bin/neurohmmer +69 -0
  9. data/data/hmm/CRH_DH44.fa.hmm +427 -0
  10. data/data/hmm/Chordate_Glucagon_PACAP.fa.hmm +484 -0
  11. data/data/hmm/Chordate_Neurotensin_precursors_neurotensin_like_Ciona.fa.hmm +526 -0
  12. data/data/hmm/Deutrostomian_tachykinin.fa.hmm +367 -0
  13. data/data/hmm/Gastrin_releasing_peptide.fa.hmm +448 -0
  14. data/data/hmm/GnRH.fa.hmm +370 -0
  15. data/data/hmm/Hypocretin_orexin.fa.hmm +451 -0
  16. data/data/hmm/Lophotrochozoan_luqin_arthropod_RYamide.fa.hmm +385 -0
  17. data/data/hmm/NPFF.fa.hmm +430 -0
  18. data/data/hmm/NPS.fa.hmm +790 -0
  19. data/data/hmm/PTH.fa.hmm +502 -0
  20. data/data/hmm/Protostomian_Allatostatin_B.fa.hmm +835 -0
  21. data/data/hmm/Protostomian_CCH_amide.fa.hmm +415 -0
  22. data/data/hmm/Protostomian_Ecdysis_Triggering_Hormone.fa.hmm +433 -0
  23. data/data/hmm/Protostomian_PDF.fa.hmm +265 -0
  24. data/data/hmm/Protostomian_allatostatin_C.fa.hmm +352 -0
  25. data/data/hmm/Protostomian_proctolin.fa.hmm +346 -0
  26. data/data/hmm/Putative_chordate_Opioid.fa.hmm +802 -0
  27. data/data/hmm/SIF.fa.hmm +286 -0
  28. data/data/hmm/TRH.fa.hmm +910 -0
  29. data/data/hmm/allatotropin.fa.hmm +433 -0
  30. data/data/hmm/ambulacrarian_amphioxus_NPS-like.fa.hmm +847 -0
  31. data/data/hmm/avp.fa.hmm +475 -0
  32. data/data/hmm/calcitonin_DH31.fa.hmm +418 -0
  33. data/data/hmm/cholecystokinin_sulfakinin.fa.hmm +433 -0
  34. data/data/hmm/chordate_OX26_QRFP.fa.hmm +475 -0
  35. data/data/hmm/chordate_somatostatin_cortistatin_like.fa.hmm +361 -0
  36. data/data/hmm/f_type_SALMF.fa.hmm +811 -0
  37. data/data/hmm/galanin.fa.hmm +391 -0
  38. data/data/hmm/l_type_SALMF.fa.hmm +523 -0
  39. data/data/hmm/nmu_pyrokinin.fa.hmm +424 -0
  40. data/data/hmm/npy_npf.fa.hmm +301 -0
  41. data/data/hmm/protostomian_CCAP.fa.hmm +415 -0
  42. data/data/hmm/protostomian_allatostatinA_buccalin.fa.hmm +706 -0
  43. data/data/hmm/protostomian_leucokinin.fa.hmm +511 -0
  44. data/data/hmm/protostomian_tackykinin.fa.hmm +760 -0
  45. data/data/hmm/tachykinin.fa.hmm +541 -0
  46. data/data/hmm/vertebrate_ghrelin_motilin.fa.hmm +382 -0
  47. data/data/raw_data/CRH_DH44.fa +44 -0
  48. data/data/raw_data/CRH_DH44.fa.aligned.fa +242 -0
  49. data/data/raw_data/Chordate_Glucagon_PACAP.fa +18 -0
  50. data/data/raw_data/Chordate_Glucagon_PACAP.fa.aligned.fa +72 -0
  51. data/data/raw_data/Chordate_Neurotensin_precursors_neurotensin_like_Ciona.fa +10 -0
  52. data/data/raw_data/Chordate_Neurotensin_precursors_neurotensin_like_Ciona.fa.aligned.fa +25 -0
  53. data/data/raw_data/Deutrostomian_tachykinin.fa +1283 -0
  54. data/data/raw_data/Deutrostomian_tachykinin.fa.aligned.fa +5707 -0
  55. data/data/raw_data/Gastrin_releasing_peptide.fa +12 -0
  56. data/data/raw_data/Gastrin_releasing_peptide.fa.aligned.fa +25 -0
  57. data/data/raw_data/GnRH.fa +22 -0
  58. data/data/raw_data/GnRH.fa.aligned.fa +66 -0
  59. data/data/raw_data/Hypocretin_orexin.fa +14 -0
  60. data/data/raw_data/Hypocretin_orexin.fa.aligned.fa +49 -0
  61. data/data/raw_data/Lophotrochozoan_luqin_arthropod_RYamide.fa +26 -0
  62. data/data/raw_data/Lophotrochozoan_luqin_arthropod_RYamide.fa.aligned.fa +91 -0
  63. data/data/raw_data/NPFF.fa +16 -0
  64. data/data/raw_data/NPFF.fa.aligned.fa +48 -0
  65. data/data/raw_data/NPS.fa +8 -0
  66. data/data/raw_data/NPS.fa.aligned.fa +24 -0
  67. data/data/raw_data/PTH.fa +24 -0
  68. data/data/raw_data/PTH.fa.aligned.fa +144 -0
  69. data/data/raw_data/Protostomian_Allatostatin_B.fa +17 -0
  70. data/data/raw_data/Protostomian_Allatostatin_B.fa.aligned.fa +120 -0
  71. data/data/raw_data/Protostomian_CCH_amide.fa +24 -0
  72. data/data/raw_data/Protostomian_CCH_amide.fa.aligned.fa +72 -0
  73. data/data/raw_data/Protostomian_Ecdysis_Triggering_Hormone.fa +24 -0
  74. data/data/raw_data/Protostomian_Ecdysis_Triggering_Hormone.fa.aligned.fa +84 -0
  75. data/data/raw_data/Protostomian_PDF.fa +16 -0
  76. data/data/raw_data/Protostomian_PDF.fa.aligned.fa +32 -0
  77. data/data/raw_data/Protostomian_allatostatin_C.fa +28 -0
  78. data/data/raw_data/Protostomian_allatostatin_C.fa.aligned.fa +56 -0
  79. data/data/raw_data/Protostomian_proctolin.fa +16 -0
  80. data/data/raw_data/Protostomian_proctolin.fa.aligned.fa +32 -0
  81. data/data/raw_data/Putative_chordate_Opioid.fa +8 -0
  82. data/data/raw_data/Putative_chordate_Opioid.fa.aligned.fa +32 -0
  83. data/data/raw_data/SIF.fa +28 -0
  84. data/data/raw_data/SIF.fa.aligned.fa +70 -0
  85. data/data/raw_data/TRH.fa +10 -0
  86. data/data/raw_data/TRH.fa.aligned.fa +50 -0
  87. data/data/raw_data/allatotropin.fa +31 -0
  88. data/data/raw_data/allatotropin.fa.aligned.fa +90 -0
  89. data/data/raw_data/ambulacrarian_amphioxus_NPS-like.fa +8 -0
  90. data/data/raw_data/ambulacrarian_amphioxus_NPS-like.fa.aligned.fa +24 -0
  91. data/data/raw_data/avp.fa +28 -0
  92. data/data/raw_data/avp.fa.aligned.fa +70 -0
  93. data/data/raw_data/calcitonin_DH31.fa +36 -0
  94. data/data/raw_data/calcitonin_DH31.fa.aligned.fa +126 -0
  95. data/data/raw_data/cholecystokinin_sulfakinin.fa +28 -0
  96. data/data/raw_data/cholecystokinin_sulfakinin.fa.aligned.fa +84 -0
  97. data/data/raw_data/chordate_OX26_QRFP.fa +10 -0
  98. data/data/raw_data/chordate_OX26_QRFP.fa.aligned.fa +25 -0
  99. data/data/raw_data/chordate_somatostatin_cortistatin_like.fa +10 -0
  100. data/data/raw_data/chordate_somatostatin_cortistatin_like.fa.aligned.fa +20 -0
  101. data/data/raw_data/f_type_SALMF.fa +118 -0
  102. data/data/raw_data/f_type_SALMF.fa.aligned.fa +590 -0
  103. data/data/raw_data/galanin.fa +93 -0
  104. data/data/raw_data/galanin.fa.aligned.fa +552 -0
  105. data/data/raw_data/kisspeptin.fa +16 -0
  106. data/data/raw_data/kisspeptin.fa.aligned.fa +0 -0
  107. data/data/raw_data/l_type_SALMF.fa +68 -0
  108. data/data/raw_data/l_type_SALMF.fa.aligned.fa +170 -0
  109. data/data/raw_data/nmu_pyrokinin.fa +18 -0
  110. data/data/raw_data/nmu_pyrokinin.fa.aligned.fa +63 -0
  111. data/data/raw_data/npy_npf.fa +20 -0
  112. data/data/raw_data/npy_npf.fa.aligned.fa +40 -0
  113. data/data/raw_data/protostomian_CCAP.fa +14 -0
  114. data/data/raw_data/protostomian_CCAP.fa.aligned.fa +42 -0
  115. data/data/raw_data/protostomian_allatostatinA_buccalin.fa +100 -0
  116. data/data/raw_data/protostomian_allatostatinA_buccalin.fa.aligned.fa +1350 -0
  117. data/data/raw_data/protostomian_leucokinin.fa +18 -0
  118. data/data/raw_data/protostomian_leucokinin.fa.aligned.fa +63 -0
  119. data/data/raw_data/protostomian_tackykinin.fa +504 -0
  120. data/data/raw_data/protostomian_tackykinin.fa.aligned.fa +2002 -0
  121. data/data/raw_data/tachykinin.fa.aligned.fa +13546 -0
  122. data/data/raw_data/vertebrate_ghrelin_motilin.fa +16 -0
  123. data/data/raw_data/vertebrate_ghrelin_motilin.fa.aligned.fa +32 -0
  124. data/lib/neurohmmer.rb +89 -0
  125. data/lib/neurohmmer/arg_validators.rb +71 -0
  126. data/lib/neurohmmer/hmmer.rb +71 -0
  127. data/lib/neurohmmer/output.rb +50 -0
  128. data/lib/neurohmmer/version.rb +4 -0
  129. data/neurohmmer.gemspec +34 -0
  130. data/spec/neurohmmer_spec.rb +11 -0
  131. data/spec/spec_helper.rb +2 -0
  132. data/template/contents.slim +55 -0
  133. metadata +269 -0
data/data/raw_data/kisspeptin.fa ADDED
@@ -0,0 +1,16 @@
1
+ >KISS1_Hsap
2
+ MNSLVSWQLLLFLCATHFGEPLEKVASVGNSRPTGQQLESLGLLAPGEQSLPCTERKPAATARLSRRGTSLSPPPESSGSPQQPGLSAPHSRQIPAPQGAVLVQREKDLPNYNWNSFGLRFGKREAAPGNHGRSAGRGGAGAGQ
3
+ >Kiss2_ZEBRAFISH_AB245404
4
+ MMLLTVILMLSVARVHTNPSGHFQYYLEDETPEETSLRVLRGTDTRPTDGSPPSKLSALFSMGAGPQKNTWWWSPESPYTKRRQNVAYYNLNSFGLRYGKREQDMLTRLKQKSPVK
5
+ >KISS_Drer_AB439561
6
+ MNTRALILFMSAMVSQSTAMRAILTDMDTPEPMPDPKPRFLSMERRQFEEPSASDDASLCFFIQEKDETSQISCKHRLARSKFNYNPFGLRFGKRNEATTSDSDRLKHKHLLPMMLYLRKQLETS
7
+ >Ensembl_Scaffold GL477315_Pmar
8
+ MTPACSLAALLAVCVFGGGAVAARTDRYGASPDSNHARRARSSEEIVTGDLRASPLRLFGAVCRHAAETPRLLRLRALRGGHDLDAGLTDGEALPRSAEQDVTEFNYNPFGLRFGRRSGAQSSTAATRSRAEAACAPGKRGCRLVISKFKLRF
9
+ >jgi_125076_Bflo
10
+ MRTTAFLLASLLVLLHTILPSTVDSLALGGREAQHRQDCGGRRIRSRVPVGLKRAWPDRRGGLNSDDIFWEDTLPNSIERRQPSTEIDDEEVVDSADPDRVQYNPNAWSRFGRSMCP
11
+ >Gala_KISS2_Bflo_87934
12
+ MSPHIPGKTMVALLLILAAVASESRFAHKLPSFPGLQQTSGPYGPREPATTPLRSFTQESRWQPWKPAGVVQTSEGSSAGFGLLHEWFRIGSKRSGGAWVADTNMDDISPNMFSLHGKRNVS
13
+ >jgi_80713_Bflo
14
+ MAVEAQMTSRAVVVAVLLVSMATSHPAAHAHLVSWAVPAKIEAQPAPQYEDVADSNSLALEAHEPLLEALSPESQPRHPASQPDSYRPLLIRLPWPLARALSKRARKPPNMNAWGQPWGKRDLSLVN
15
+ jgi_96628_Bflo
16
+ MMKRRLLVAVLLLVACSMGCRGTQRDILLPHGAREDTAKSGDGRAVHDAVLLREVLTHGPTIEALVRSTMTTVLVATGWMYKMMHGKVPGLDGSSRRGLQQGRRQGEEASTLHGILTSNIATTEQNSTSTARQTTETEVSTSHTARSGWEYENEPPEYNPNSWSVFGRMVSPQASPAPPEQDDEPGVPGMPVLAEMPPKAAANLNMWSSFGRRSAADRIPERTRDGSPVRSSSVNPAFFLTPFGDQTDKQRSIEERQVKQTGDAAASHKRTPDPRVYPPNARPTLQPDWTKIPFFG
data/data/raw_data/kisspeptin.fa.aligned.fa ADDED
File without changes
data/data/raw_data/l_type_SALMF.fa ADDED
@@ -0,0 +1,68 @@
1
+ >Amphioplus_cipus
2
+ MVKDQQMENEERDIEERRSGRRSYLNSGLLFGKRFDETGDFLTDDEEDEDNRHFNVEIRGRNRLPFHSALMQGKRTSPLEEEELMSSRSKKRTRPVFHSGIMMGKRYPSLFSEGA
3
+ >Amphioplus_ctenacantha
4
+ MRLQPRFVFFICALVPIVLAGTIPRRTSGNEVPTFNYDAMVKDQQMENEDRYIEERRSGRRSYLNSGLLFGKRFDEI
5
+ >Amphipholis_squamata
6
+ MQGKRTPLEEQNVMSRSKKRTRPVFHSGIMMGKRYPLQLDADDINVDKRKGSRLR
7
+ >Amphiura_constricta
8
+ MRLQPRFVWFFICALVPIVLAGTIPRRNSGGKEVPTSFHYDVLVKDQQMENEDRDIEERRSGRGRTYLNSGLLFGKRFDDTGDFLLTDDDLDEDTRHFNVETRGRNRLPFHSALMQGKRTPPLDEEDMLTSRSKKRSRPLFHSGIMMGKRYPSLFSEDAAVDKRKSRLRWSDGMLFGK
9
+ >Asteronyx_loveni
10
+ MRLQPLFVCFICAIVPFVATGRLPRRFEAPQYNYAAMVKDRTMEDDNKEIEERRSGRRNPPGLNSGLFFGKRFDGTDDFVNDDETRQINVDVRGRNKLPFHSGLMQGKRNQQEEQGMTEKRSRPVFHSGIMMGKRFPDDDLEEFKRKAGQRLRWSDGMQFGK
11
+ >Asteroschema_bidwillae
12
+ MVHGDRDQKKKGITEDISVLSCKMRLQPLFVCFICALVPFVATGRIPRRLEAPQYNYAAMVKSHLEDDNKEIEERRSGRRNNPSLNSGLFFGKRFDGTDEFVNDDETRQINMEIRGRSKLPFHSGLMQGKRNQQEEEGMTEKRTRPVFHSGIMMGKRYPSIGDANDLEEFKRKAGQRLRWSNGMQFGK
13
+ >Asteroschema_tubiferum
14
+ MRLQPLFVCFICALVPFVATGRIPRRLEAPQYNYAAMVKSHLEDDNKEIEERRSGRRNNPSLNSGLFFGKRFDGTDEFVNDDETRQINMEIRGRSKLPFHSGLMQGKRNQQEEEGMTEKRTRPVFHSGIMMGKRYPSIGDANDLEEFKRKAGQRLRWSNGMQFGK
15
+ >Bathypectinura_heros
16
+ MRLQPLLVFFICALVPFVVAGTIPRRNFEVPNYNYDAMVKDQQMENEDKEVEERRSGRRTHSLNSGLLFGKRFEETDDFINDDETRQINVDIRGRNKLPFHSGLMQGKRNPEQEEADNAKRTRPIFHSGFLMGKRYPSESDDDLEEFKRKAGARLRWSDGMQFGK
17
+ >Clarkcoma_canaliculata
18
+ MRLQPLLVFFICAIVPFVAAGTIPRRTGFEVPNYNYDAMVKDQQMENEDKEVEERRSGRRTHTLNSGLLFGKRFEETDDFINDDETRQINVDIRGRNKLPFHSGLMQGKRNPQQDQQEISDKRSRPVFHSGFLMGKRYPYEIDDDLEEFKRKAGQRLMWSNGIQFGK
19
+ >Glaciacantha_sp.nov
20
+ MRLQPLLVFCICALVPFAATGTIPRRRSGFEGANYNYDVLVKDTAQLEDEDKEIEERRSGRRNPSLNSGLIFGRRFEETAADDFLNDDESRQINLEIRGRSRLPFHSGLMQGKRNPQQDDLSVKRSRPAFHTGFLMGKRFPEADDLDLEEFKRRTGQRLRFSDGMLFGK
21
+ >Ophiactis_abyssicola
22
+ MRLQPRLVLFICALVPIIAAGTIPRRTSKELPTYNYDAMVKDQQMENEDREIEERRSGRRTYLNSGLLFGKRFGETADAFINDDDTRQQQQFTVDIRGRNKLPFHSGLMQGKRSPQQENGPDSNDWKRSRPKFHSAMLLGKRLPNFEFDAADDAQDIDEFKRKASRLRWSNGMAFGRK
23
+ >Ophiactis_resiliens
24
+ MRLIPGLVLFICALVPIIAAGTIPRRTSKELPTYNYDAMVKDQQMENEDREIEERRSGRSRTYLNSGLLFGKRFAETADDFINEDNTRQQQQFTVDIRGRNRLPFHSGLMQGKRSPEVEREPESGNRKRTRPAFHSAMLLGKRFPNFEFDAADDDLEEFKRKASRLRWSTGTTFGRK
25
+ >Ophiactis_savigyni
26
+ MRLIPGLVLFICALVPIIAAGTIPRRTSKELPTYNYDAKVKDQQMENEDREIEERRSARSRTYLNSGLLFGKRFGETADDFINEDNTRQQQQQFTVDIRGRNRLPFHSGLMQGKRNPQDEREPESSIKRGRPKFHSAMAFGKRYPNFEFDAADDDLEEFKRKASRLRWATGTQFGRK
27
+ >Ophiocantha_funebris
28
+ MRLQPVTVFFICAIVPFVAAGTIPRRTGFEVPNYNYDAMVKNQQMENEDKEVEERRSGRRTHTLNSGLLFGKRFEETDDFINDDESRQFNVDIRGRNKLPFHSGLMQGKRDSQQEISNKRSRPVFHSGFMMGKRYPPYEIDNDLEDFKRKAGQRLMWSNGISFGK
29
+ >Ophiocentrus_pilosus
30
+ MRLQPRFVFFICALVPIVLAGTIPRRGGNEVPAFNYDAMVKDKQMENEDRDIEERRSGRRTYLNSGLLFGKRFDETGDFLTDEEEDNRHFNVEIRGRNRLPFHSALMQGKRTPLEERDLMSRSKKRTRPVFHSGIMMGKRYQLYSDDAVDKRKGSRLRWSDGMLFGK
31
+ >Ophiocoma_wendtii
32
+ YAMVKDQQMANEDKEVEERRSVRKTHSINTGLLFGKRFEETDDFINDDDEARQINVDIRARSKLPFHSGLMQGKRNPQQEDEVNNNKRTRPVFHSGFLMGKRYPLETADALEDEYKRKPKA
33
+ >Ophiocreas_oedipus
34
+ MVTETRKKGITEDISVLSCKMRLQPLFVCFICALVPFVATGRIPRRLEAPQYNYAAMVKSHMEDDNKEIEERRSGRRNNPSLNSGLFFGKRFDGTDEFVNDDETRQINMEIRGRSKLPFHSGLMQGKRNQQDEEGMTEKRTRPVFHSGIMMGKRYPSIGDANDLEEFKRKAGQRLRWSNGMQFGK
35
+ >Ophiolepis_impressa
36
+ MRLQPRLVFFICALVPIIAAGTIPRRTGIEVPTFNYDAKVKDQQMENEDREIEERRSGRRTHSLNSGLLFGKRFEETEDFLNDDDTREINVEIRGRNRLPFHSALMQGKRTPQQEEENSAKKRSRPVFHSGFMMGKRFPMEYDAADDANIEEFKRKAARLRWSNGMQFGK
37
+ >Ophiolimna_perfida
38
+ SGRRTHTLNSGLLFGKRFEETDDFINDDESRQINLDIRGRNKLPFHSGLMQGKRDPQQEQREISNKRSRPVFHSGFLMGKRYPYENDNDLEEFKRKAGQRLMWSNGISFGK
39
+ >Ophiologimus_prolifer
40
+ GTIPRRTTNYNYDAMVKDQQMENEDKEIEERRSGRRTHTLNSGLLFGKRFDEIDDFINDDETRQINVDIRGRNKLPFHSGLMQG
41
+ >Ophiomoeris_obstricta
42
+ MQGKRDSQQEIDDKRSRPKFHSGFLMGKRYPQYETDNDLEEFKRKAGQRLMWSN
43
+ >Ophiomusium_lymani_1
44
+ IDEAPPWYTSIILGFQHYLTMFGATVAVPLFLAKSLCVDKDQVALGEIIGTIFFVSGIATLLQTTFGCRLPIVQGGTFSFLIPAIAILSLRGPCPAPLSENATSIERAEVTDEWQSRMRE
45
+ >Ophiomusium_lymani_2
46
+ MAPIFCYFFQMRLQPLLVFFICALVPFVATGTIPRRTGFEVPNYNYDAMVKDQQMENEDKEIEERRSGRRNPSLNSALIFGKRFEGTDDFLNDDDTRQINVDIRGRNRLPFHSGLMQGKRNPQEDVNE
47
+ >Ophionereis_reticulata
48
+ MRLQPRLVFFICALVPLVAAGTIPRRTGIEVPTFNYDAMVKNQHMENDDKEIEERRSGRRTHSLNSGLLFGKRFEETDDFINEDDDTRQINVDIRGRNRMPFHSALMQGKRTPLQQLEETSGMKRSRPKFHSGIMMGKRFPLELENNADAIEEFKRKAA
49
+ >Ophionotus_victoriae
50
+ MRLQPLLVFCICALVPFAATGTIPRRRSGFEGANYNYDVLVKDTTQLEDENKEIDERRSGRRNPSLNSGLIFGKRFEEAAEDFLNDDESRQINLVSRGRSRLPFHSGLMQGKRNPLQDNLSVKRSRPQFHTGFMMGKRFTPEADDFDLEEFKRKAGQRLRFSDGMLFGK
51
+ >Ophiopeza_cylindrica
52
+ MQGKRNPQQQEEAVNDKRSRPVFHSGFLMGKRYPSESDEDLEEFKRKA
53
+ >Ophiophragmus_filograneus
54
+ MQGKRTPLEEEDVMSRSKKRTRPVFHSGIMMGKRYPQQSDDVVVDKRKGSRL
55
+ >Ophiophrura_liodisca
56
+ MRLQPLLVFVICALVPFVAAGTIPRRTGFEVPNYNYDAMVKDQQMENEDKEIDERRSGRRTHTINSGLLFGKRFEETDDFINDDETKQINVDIRGRHKLPFHSALMQGKRNQQSGEEISAKRTRPVFHSGFMMGKRYQMESADDANLEDVKRKAGYARLRWSDGMQFGK
57
+ >Ophiophycis_johni
58
+ MRLQPLLVCFICALVPFVATGTIPRRTAFEGHNYNYDAMVKDTQMENENKEIDERRSGRRRGPALNSALIFGKRLEGTDDFLNDDETKQIKVDIRGRSRLPFHTGFMQGKRNPQQVDQSAKRTRPVFHSGFMMGKRFPTADEMDLEEFKRKAGRLRFSDGMLFGK
59
+ >Ophioplax_lamellosa
60
+ NAMKRSRPVFHSGIMMGKRYPLENNAEAIEDFKRKASRLRFHDGMLFGK
61
+ >Ophioplinthaca_plicata
62
+ MRLQPVLVFFICAIVPFVAAGTIPRRTGFEVPNYNYDAMVKNQQMENEDKEVEERRSGRRTHTLNSGLLFGKRFEETDDFINDDELRQFNVDIRGRNKLPFHSGLMQGKRDPQQGISDKRSRPAFHSGFLMGKRYPPFEADNDLEEFKRRQRLMWSNGISFGK
63
+ >Ophiothrix_angulata
64
+ MRLQARLVLFICAIIPVIAAGVVPRRASKESPTYNYDAMVKDPQMANQDKEIEERRSGRSRTYLNSGLLFGKRFEEAADDFINDENTNQQQQFTVEVRGRSKLPFHSALMQGKRSSLEDEFDSSFSKRGKQKAKFHSAMLLGKRYPEFGIDAVDGVQNIDEFKRKGSRLRWSNGMAFGRK
65
+ >Ophiothrix_caespitosa
66
+ MRLQARLVLFICALIPVIAAGVAPRRSTKELPTYNYDAMVKDPQMANQDREIEERRSGRSRTYLNSGLLFGKRFEEAADDFINDDDPNQPQQFTVEVRGRSKLPFHSALMQGKRNSLEDESDSSFNKRGKPKAKFHSAMLLGKRYPEFGINEVDDHQDIEEFKRKGSRLRWSNGISFGRK
67
+ >Ophiotreta_eximia
68
+ RRSGRRTHSLNSGLLFGKRFEETDDFINDDDETRQINVDIRGRNKLPFHSGLMQGKRNPQQEQQEISDKRSRPAFHSGFLMGKRYPYEIDDDLEEFKRKAGQRLMWSNGMQFGK
data/data/raw_data/l_type_SALMF.fa.aligned.fa ADDED
@@ -0,0 +1,170 @@
1
+ >Amphioplus_cipus
2
+ ------------------------------------------------------------
3
+ -----MVKDQ-QMENEERDIEERRSGR-RSY-LNSGLLFGKRFD--ETGDF-LTDDEEDE
4
+ DNRHFNVEIRGRNRLPFHSA---LMQ---GKRTSPLEEEELM------SSRSKKRTRPV-
5
+ -FHSGIMMGKRY-PSLFSEGA-------------------------------
6
+ >Amphioplus_ctenacantha
7
+ -----------------------MRLQPRFV-FFICALVPIVLAGTIPRRT-SGNEVPT-
8
+ FNYDAMVKDQ-QMENEDRYIEERRSGR-RSY-LNSGLLFGKRFD--EI------------
9
+ ------------------------------------------------------------
10
+ ----------------------------------------------------
11
+ >Amphipholis_squamata
12
+ ------------------------------------------------------------
13
+ ------------------------------------------------------------
14
+ ------------------------MQ---GKRTP-LEEQNVM-------SRSKKRTRPV-
15
+ -FHSGIMMGKRY-PL--QLD-ADD---INVDKRKGS---RLR----------
16
+ >Amphiura_constricta
17
+ -----------------------MRLQPRFVWFFICALVPIVLAGTIPRRNSGGKEVPTS
18
+ FHYDVLVKDQ-QMENEDRDIEERRSGRGRTY-LNSGLLFGKRFD--DTGDFLLTDDDLDE
19
+ DTRHFNVETRGRNRLPFHSA---LMQ---GKRTPPLDEEDML------TSRSKKRSRPL-
20
+ -FHSGIMMGKRY-PSLFSEDAAVD-------KRKS----RLRWSDGMLFGK-
21
+ >Asteronyx_loveni
22
+ -----------------------MRLQPLFV-CFICAIVPFVATGRLPRR----FEAPQ-
23
+ YNYAAMVKDR-TMEDDNKEIEERRSGRRNPPGLNSGLFFGKRFD--GTDDF-VN-DD---
24
+ ETRQINVDVRGRNKLPFHSG---LMQ---GKRN--QQEEQ---------GMTEKRSRPV-
25
+ -FHSGIMMGKRF-PD----------DDLEEFKRKAG--QRLRWSDGMQFGK-
26
+ >Asteroschema_bidwillae
27
+ MVHGDRDQKKKGITEDISVLSCKMRLQPLFV-CFICALVPFVATGRIPRR----LEAPQ-
28
+ YNYAAMVKS--HLEDDNKEIEERRSGRRNNPSLNSGLFFGKRFD--GTDEF-VN-DD---
29
+ ETRQINMEIRGRSKLPFHSG---LMQ---GKRN--QQEEE---------GMTEKRTRPV-
30
+ -FHSGIMMGKRY-PS------IGDANDLEEFKRKAG--QRLRWSNGMQFGK-
31
+ >Asteroschema_tubiferum
32
+ -----------------------MRLQPLFV-CFICALVPFVATGRIPRR----LEAPQ-
33
+ YNYAAMVKS--HLEDDNKEIEERRSGRRNNPSLNSGLFFGKRFD--GTDEF-VN-DD---
34
+ ETRQINMEIRGRSKLPFHSG---LMQ---GKRN--QQEEE---------GMTEKRTRPV-
35
+ -FHSGIMMGKRY-PS------IGDANDLEEFKRKAG--QRLRWSNGMQFGK-
36
+ >Bathypectinura_heros
37
+ -----------------------MRLQPLLV-FFICALVPFVVAGTIPRR---NFEVPN-
38
+ YNYDAMVKDQ-QMENEDKEVEERRSGR-RTHSLNSGLLFGKRFE--ETDDF-IN-DD---
39
+ ETRQINVDIRGRNKLPFHSG---LMQ---GKRNP-EQEE----------ADNAKRTRPI-
40
+ -FHSGFLMGKRY-P--SE---SDD--DLEEFKRKAG--ARLRWSDGMQFGK-
41
+ >Clarkcoma_canaliculata
42
+ -----------------------MRLQPLLV-FFICAIVPFVAAGTIPRR--TGFEVPN-
43
+ YNYDAMVKDQ-QMENEDKEVEERRSGR-RTHTLNSGLLFGKRFE--ETDDF-IN-DD---
44
+ ETRQINVDIRGRNKLPFHSG---LMQ---GKRNP-QQDQQ---------EISDKRSRPV-
45
+ -FHSGFLMGKRY-P--YE---IDD--DLEEFKRKAG--QRLMWSNGIQFGK-
46
+ >Glaciacantha_sp.nov
47
+ -----------------------MRLQPLLV-FCICALVPFAATGTIPRRR-SGFEGAN-
48
+ YNYDVLVKDTAQLEDEDKEIEERRSGR-RNPSLNSGLIFGRRFEETAADDF-LN-DD---
49
+ ESRQINLEIRGRSRLPFHSG---LMQ---GKRNP-QQDDL-----------SVKRSRPA-
50
+ -FHTGFLMGKRF-PE------ADDL-DLEEFKRRTG--QRLRFSDGMLFGK-
51
+ >Ophiactis_abyssicola
52
+ -----------------------MRLQPRLV-LFICALVPIIAAGTIPRR--TSKELPT-
53
+ YNYDAMVKDQ-QMENEDREIEERRSGR-RTY-LNSGLLFGKRFGE-TADAF-INDDDTR-
54
+ QQQQFTVDIRGRNKLPFHSG---LMQ---GKRSP-QQENG-----P--DSNDWKRSRPK-
55
+ -FHSAMLLGKRL-PN-FEFDAADDAQDIDEFKRKAS---RLRWSNGMAFGRK
56
+ >Ophiactis_resiliens
57
+ -----------------------MRLIPGLV-LFICALVPIIAAGTIPRR--TSKELPT-
58
+ YNYDAMVKDQ-QMENEDREIEERRSGRSRTY-LNSGLLFGKRFAE-TADDF-INEDNTR-
59
+ QQQQFTVDIRGRNRLPFHSG---LMQ---GKRSP-EVERE-----P--ESGNRKRTRPA-
60
+ -FHSAMLLGKRF-PN-FEFDAADD--DLEEFKRKAS---RLRWSTGTTFGRK
61
+ >Ophiactis_savigyni
62
+ -----------------------MRLIPGLV-LFICALVPIIAAGTIPRR--TSKELPT-
63
+ YNYDAKVKDQ-QMENEDREIEERRSARSRTY-LNSGLLFGKRFGE-TADDF-INEDNTRQ
64
+ QQQQFTVDIRGRNRLPFHSG---LMQ---GKRNP-QDERE-----P---ESSIKRGRPK-
65
+ -FHSAMAFGKRY-PN-FEFDAADD--DLEEFKRKAS---RLRWATGTQFGRK
66
+ >Ophiocantha_funebris
67
+ -----------------------MRLQPVTV-FFICAIVPFVAAGTIPRR--TGFEVPN-
68
+ YNYDAMVKNQ-QMENEDKEVEERRSGR-RTHTLNSGLLFGKRFE--ETDDF-IN-DD---
69
+ ESRQFNVDIRGRNKLPFHSG---LMQ---GKRDS-QQ------------EISNKRSRPV-
70
+ -FHSGFMMGKRY-PP-YE---IDN--DLEDFKRKAG--QRLMWSNGISFGK-
71
+ >Ophiocentrus_pilosus
72
+ -----------------------MRLQPRFV-FFICALVPIVLAGTIPRR--GGNEVPA-
73
+ FNYDAMVKDK-QMENEDRDIEERRSGR-RTY-LNSGLLFGKRFD--ETGDF-LTDEE--E
74
+ DNRHFNVEIRGRNRLPFHSA---LMQ---GKRTP-LEERDLM-------SRSKKRTRPV-
75
+ -FHSGIMMGKRY-QL-YSDDAVD--------KRKGS---RLRWSDGMLFGK-
76
+ >Ophiocoma_wendtii
77
+ ------------------------------------------------------------
78
+ --Y-AMVKDQ-QMANEDKEVEERRSVR-KTHSINTGLLFGKRFE--ETDDF-INDDD---
79
+ EARQINVDIRARSKLPFHSG---LMQ---GKRNP-QQEDE---------VNNNKRTRPV-
80
+ -FHSGFLMGKRY-PL-ETADALED-----EYKRKPK--A-------------
81
+ >Ophiocreas_oedipus
82
+ MV---TETRKKGITEDISVLSCKMRLQPLFV-CFICALVPFVATGRIPRR----LEAPQ-
83
+ YNYAAMVKS--HMEDDNKEIEERRSGRRNNPSLNSGLFFGKRFD--GTDEF-VN-DD---
84
+ ETRQINMEIRGRSKLPFHSG---LMQ---GKRN--QQDEE---------GMTEKRTRPV-
85
+ -FHSGIMMGKRY-PS------IGDANDLEEFKRKAG--QRLRWSNGMQFGK-
86
+ >Ophiolepis_impressa
87
+ -----------------------MRLQPRLV-FFICALVPIIAAGTIPRR--TGIEVPT-
88
+ FNYDAKVKDQ-QMENEDREIEERRSGR-RTHSLNSGLLFGKRFE--ETEDF-LN-DD---
89
+ DTREINVEIRGRNRLPFHSA---LMQ---GKRTP-QQEEE---------NSAKKRSRPV-
90
+ -FHSGFMMGKRF-P--MEYDAADDA-NIEEFKRKAA---RLRWSNGMQFGK-
91
+ >Ophiolimna_perfida
92
+ ------------------------------------------------------------
93
+ ------------------------SGR-RTHTLNSGLLFGKRFE--ETDDF-IN-DD---
94
+ ESRQINLDIRGRNKLPFHSG---LMQ---GKRDP-QQEQR---------EISNKRSRPV-
95
+ -FHSGFLMGKRY-P--YE---NDN--DLEEFKRKAG--QRLMWSNGISFGK-
96
+ >Ophiologimus_prolifer
97
+ --------------------------------------------GTIPRR------TTN-
98
+ YNYDAMVKDQ-QMENEDKEIEERRSGR-RTHTLNSGLLFGKRFD--EIDDF-IN-DD---
99
+ ETRQINVDIRGRNKLPFHSG---LMQ---G------------------------------
100
+ ----------------------------------------------------
101
+ >Ophiomoeris_obstricta
102
+ ------------------------------------------------------------
103
+ ------------------------------------------------------------
104
+ ------------------------MQ---GKRDS-QQEID------------DKRSRPK-
105
+ -FHSGFLMGKRY-PQ-YE---TDN--DLEEFKRKAG--QRLMWSN-------
106
+ >Ophiomusium_lymani_1
107
+ I-----------DEAPPWYTSIILGFQHYLTMFGATVAVPLFLAKSL-------------
108
+ ----CVDKDQ----------------------VALGEIIGTIF-----------------
109
+ ----------------FVSGIATLLQTTFGCRLPIVQGGTFSFLIPAIAILSLRGPCPA-
110
+ -------------PL------SENATSIERAEVTDEWQSRMRE---------
111
+ >Ophiomusium_lymani_2
112
+ M-------------APIFCYFFQMRLQPLLV-FFICALVPFVATGTIPRR--TGFEVPN-
113
+ YNYDAMVKDQ-QMENEDKEIEERRSGR-RNPSLNSALIFGKRFE--GTDDF-LN-DD---
114
+ DTRQINVDIRGRNRLPFHSG---LMQ---GKRNP-QE-----------------------
115
+ --------------------------DVNE----------------------
116
+ >Ophionereis_reticulata
117
+ -----------------------MRLQPRLV-FFICALVPLVAAGTIPRR--TGIEVPT-
118
+ FNYDAMVKNQ-HMENDDKEIEERRSGR-RTHSLNSGLLFGKRFE--ETDDF-INEDD---
119
+ DTRQINVDIRGRNRMPFHSA---LMQ---GKRTPLQQLEE---------TSGMKRSRPK-
120
+ -FHSGIMMGKRF-P--LELENNAD--AIEEFKRKAA----------------
121
+ >Ophionotus_victoriae
122
+ -----------------------MRLQPLLV-FCICALVPFAATGTIPRRR-SGFEGAN-
123
+ YNYDVLVKDTTQLEDENKEIDERRSGR-RNPSLNSGLIFGKRFEE-AAEDF-LN-DD---
124
+ ESRQINLVSRGRSRLPFHSG---LMQ---GKRNP-LQDNL-----------SVKRSRPQ-
125
+ -FHTGFMMGKRFTPE------ADDF-DLEEFKRKAG--QRLRFSDGMLFGK-
126
+ >Ophiopeza_cylindrica
127
+ ------------------------------------------------------------
128
+ ------------------------------------------------------------
129
+ ------------------------MQ---GKRNP-QQQEE---------AVNDKRSRPV-
130
+ -FHSGFLMGKRY-PS------ESDE-DLEEFKRKA-----------------
131
+ >Ophiophragmus_filograneus
132
+ ------------------------------------------------------------
133
+ ------------------------------------------------------------
134
+ ------------------------MQ---GKRTP-LEEEDVM-------SRSKKRTRPV-
135
+ -FHSGIMMGKRY-PQ--Q---SDD---VVVDKRKGS---RL-----------
136
+ >Ophiophrura_liodisca
137
+ -----------------------MRLQPLLV-FVICALVPFVAAGTIPRR--TGFEVPN-
138
+ YNYDAMVKDQ-QMENEDKEIDERRSGR-RTHTINSGLLFGKRFE--ETDDF-IN-DD---
139
+ ETKQINVDIRGRHKLPFHSA---LMQ---GKRN--QQSGE---------EISAKRTRPV-
140
+ -FHSGFMMGKRY-----QMESADDA-NLEDVKRKAGY-ARLRWSDGMQFGK-
141
+ >Ophiophycis_johni
142
+ -----------------------MRLQPLLV-CFICALVPFVATGTIPRR--TAFEGHN-
143
+ YNYDAMVKDT-QMENENKEIDERRSGRRRGPALNSALIFGKRLE--GTDDF-LN-DD---
144
+ ETKQIKVDIRGRSRLPFHTG---FMQ---GKRNP-QQVDQ-----------SAKRTRPV-
145
+ -FHSGFMMGKRF-PT------ADEM-DLEEFKRKAG---RLRFSDGMLFGK-
146
+ >Ophioplax_lamellosa
147
+ ------------------------------------------------------------
148
+ ------------------------------------------------------------
149
+ --------------------------------N------------------AMKRSRPV-
150
+ -FHSGIMMGKRY-PL------ENNAEAIEDFKRKAS---RLRFHDGMLFGK-
151
+ >Ophioplinthaca_plicata
152
+ -----------------------MRLQPVLV-FFICAIVPFVAAGTIPRR--TGFEVPN-
153
+ YNYDAMVKNQ-QMENEDKEVEERRSGR-RTHTLNSGLLFGKRFE--ETDDF-IN-DD---
154
+ ELRQFNVDIRGRNKLPFHSG---LMQ---GKRDP-QQ------------GISDKRSRPA-
155
+ -FHSGFLMGKRY-PP-FE---ADN--DLEEFKRR----QRLMWSNGISFGK-
156
+ >Ophiothrix_angulata
157
+ -----------------------MRLQARLV-LFICAIIPVIAAGVVPRR--ASKESPT-
158
+ YNYDAMVKDP-QMANQDKEIEERRSGRSRTY-LNSGLLFGKRFEE-AADDF-INDENTN-
159
+ QQQQFTVEVRGRSKLPFHSA---LMQ---GKRSSLEDEFD---------SSFSKRGKQKA
160
+ KFHSAMLLGKRY-PE-FGIDAVDGVQNIDEFKRKGS---RLRWSNGMAFGRK
161
+ >Ophiothrix_caespitosa
162
+ -----------------------MRLQARLV-LFICALIPVIAAGVAPRR--STKELPT-
163
+ YNYDAMVKDP-QMANQDREIEERRSGRSRTY-LNSGLLFGKRFEE-AADDF-INDDDPN-
164
+ QPQQFTVEVRGRSKLPFHSA---LMQ---GKRNSLEDESD---------SSFNKRGKPKA
165
+ KFHSAMLLGKRY-PE-FGINEVDDHQDIEEFKRKGS---RLRWSNGISFGRK
166
+ >Ophiotreta_eximia
167
+ ------------------------------------------------------------
168
+ ----------------------RRSGR-RTHSLNSGLLFGKRFE--ETDDF-INDDD---
169
+ ETRQINVDIRGRNKLPFHSG---LMQ---GKRNP-QQEQQ---------EISDKRSRPA-
170
+ -FHSGFLMGKRY-P--YE---IDD--DLEEFKRKAG--QRLMWSNGMQFGK-
data/data/raw_data/nmu_pyrokinin.fa ADDED
@@ -0,0 +1,18 @@
1
+ >Uniprot_NMU_Hsap
2
+ MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDDTCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVVSSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI
3
+ >Ensembl_ENSDART00000063564_Drer
4
+ MSPGNTSALMLAVLLLSFIPITTSAPMLLNPSSLEHEQLLTQITDLCSFYLSADPSFRTSDVLEDLCFLMLGSLQKSKEITARETSKRENLQGPGRIQSRGYFLYRPRNGRRSDEYV
5
+ >jgi_149279_Lgig
6
+ MEPSPVKIVACFVIFAVIGTEAMNYMAFPRLGRSGYLAFPRLGRSDGQTIQSSEFEQAECCPEGIKSHWIIIGASKPEIRSRCSPKSVCCEGLEELVGRSSDHIFYTKCTKITDEKTENTVLDRLLRKS
7
+ >jgi_231562_Lgig
8
+ MTSLTCLLCNGAPTEDSLSRVRRGGWSMLRLGRGLQMLRLGKRTHPSGLDIYLDRDLHERQVPLPRYGKDLDWQNFLERHMLGNTEMDEEKRESMLPLTDPFLSEAIDGYPHMRPAPRGGRFKRSAGRFRYYPEVRSEERAVALPRFGRLIEKELKHKDGNDESKERAVPAPRFGRNPH
9
+ >jgi_312704_Dpul
10
+ MRIAIIHSLVLVVIYLAYSDAAPPQILKSQSLIPFPRVGRSRSSFIANAVGSARSGGAGNPMMMGSGGNANGKSPNNWMMNNADIKRHLIPFPRVGKRQNLIPFPRVGRAGYYQPGFFPSTDDEEGQASIQQQFALSSEESQASAPSSFLMSGSDILGALNNGRSNSDERTAVFIPRRWMTNSQESEE
11
+ >GLEAN_08429_Tcas
12
+ MKTFLIYSACVVLFCIANCQGEPKEPKRNKLASVYALTPSLRVGRRSEGTDVKRRIGKMVSFPRIGRSESNWVPDDNSYGAQRPGANSGGMWFGPRLGRVQKRSENFTPWAYIILNGEAPIIREVHYSPRLGRESEEAYEEILDSNLDVL
13
+ >Ensembl_FBtr0085514_capability_Dmel
14
+ MKSMLVHIVLVIFIIAEFSTAETDHDKNRRGANMGLYAFPRVGRSDPSLANSLRDGLEAGVLDGIYGDASQEDYNEADFQKKASGLVAFPRVGRGDAELRKWAHLLALQQVLDKRTGPSASSGLWFGPRLGKRSVDAKSFADISKGQKELN
15
+ >Ensembl_FBtr0082639_hugin_Dmel
16
+ MCGPSYCTLLLIAASCYILVCSHAKSLQGTSKLDLGNHISAGSARGSLSPASPALSEARQKRAMGDYKELTDIIDELEENSLAQKASATMQVAAMPPQGQEFDLDTMPPLTYYLLLQKLRQLQSNGEPAYRVRTPRLGRSIDSWRLLDAEGATGMAGGEEAIGGQFMQRMVKKSVPFKPRLGKRAQVCGGD
17
+ >Ensembl_Y23B4A.2_Cele
18
+ MLLWIVATLLIFSLPVSTALDYNDFSLQRIARAPHPSSALLVPYPRVGKRSNILNNNSESQNSVQKRLYMARVGKRAFFYTPRIGK
data/data/raw_data/nmu_pyrokinin.fa.aligned.fa ADDED
@@ -0,0 +1,63 @@
1
+ >Uniprot_NMU_Hsap
2
+ MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPIL----PQGLQPEQQLQL--
3
+ ---WNEIDDTCSSFLSIDSQPQASNAL---------------EEL------CF---MIMG
4
+ MLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVVSSVVHPLLQLVPHLHERRMKRFRVDEE
5
+ FQSP-------FASQSR--------------------------------------GYFL-
6
+ ------------------------------------FRPRN------GRRSAG-------
7
+ ----FI-------------------------------------------------
8
+ >Ensembl_ENSDART00000063564_Drer
9
+ M---------SPGN----TSALMLAVLLLSFIP-ITTSAPML--LNPSSLEHEQLL----
10
+ ----TQITDLCSFYLSADPSFRTSDVL---------------EDL------CF---LMLG
11
+ SLQKSKEITARETSKR------------------------------------------EN
12
+ LQGP-------GRIQSR--------------------------------------GYFL-
13
+ ------------------------------------YRPRN------GRRSDE-------
14
+ ----YV-------------------------------------------------
15
+ >jgi_149279_Lgig
16
+ M------------------EPSPVKIV----------ACFVIFAVIGTEA----------
17
+ --------------MNYMAFPRLGRS----------------------------------
18
+ ------------------------------------------------------------
19
+ ---------------GYLAFPRLGRSDGQTIQSSEFEQAE------CCPEGIK--SHWII
20
+ -IGASKPEIRSRCS------------PKSVCCEGL---EELV-----GRSSDH----IFY
21
+ TKCTKITDEK----TENTVLDRLLR-------------KS---------------
22
+ >jgi_231562_Lgig
23
+ M------------------TS--LTCLL-------------------CNGAPTE------
24
+ -------DSLSRVRRGGWSMLRLGRGL---------------QML------------RLG
25
+ KRTHPSGLD---------------------------------------------IYLDRD
26
+ LHE------------RQVPLPRYGKD----LDWQNF---------------LE--RHML-
27
+ --GNTEMDEEKRESMLP--------LTDPFLSEAIDGYPHMRPAPRGGRFKRSAGRFRYY
28
+ P---EVRSEE----RAVA-LPRFGRLIEKELKHKDGNDESKERAVPAPRFGRNPH
29
+ >jgi_312704_Dpul
30
+ M-----------------------RIAI------IHSLVLVVIYLAYSDAAPPQIL----
31
+ ------------KSQSLIPFPRVGRSR----------SSFIANAVGSARSGGAGNPMMMG
32
+ SGGNANGKSPNN-----------------------------------------WMMNNAD
33
+ IKRHLIPFPRVGKRQNLIPFPRVGRA-----------------------------GYYQP
34
+ GFFPSTDDEEGQASIQQQFALSSEESQASAPSSFLMSGSDILGALNNGRSNSDERTAVFI
35
+ PRR-WMTNSQ----------------------------ESEE-------------
36
+ >GLEAN_08429_Tcas
37
+ M-----------------------KTFL------IYSACVVLFCIANCQGEPKEPK----
38
+ -------RNKLASVYALTPSLRVGRR----------------------------------
39
+ -------------------------------------------------------SEGTD
40
+ VKR---------RIGKMVSFPRIGRSE----------------------------SNWV-
41
+ ------PDDNSYGA-----------QRPGANSGGMWFGPRL------GRVQKRSE--NFT
42
+ PWAYIILNGEAPIIREVHYSPRLGR-------------ESEEAYEEILDSNLDVL
43
+ >Ensembl_FBtr0085514_capability_Dmel
44
+ M-----------------------KSML------VH-IVLVIFIIAEFSTAETDHD----
45
+ -------KNRRGANMGLYAFPRVGRSD----------PSL-ANSLRDGLEAGV----LDG
46
+ IYGDASQED----------------------------------------------YNEAD
47
+ FQK---------KASGLVAFPRVGRG-----------DAE-----------LRKWAHLLA
48
+ --LQQVLDKRT----------------GPSASSGLWFGPRL------GKRSVDAK--SFA
49
+ D----ISKGQ----KELN-------------------------------------
50
+ >Ensembl_FBtr0082639_hugin_Dmel
51
+ M-----------------CGPSYCTLLL------IAASCYILVCSHAKSLQGTSKLDLGN
52
+ HISAGSARGSLSPASPALSEARQKRAMGDYKELTDIIDELEENSLAQKASATM---QVAA
53
+ MPPQGQEFD-------------------------------LDTMPPL--TYYLLLQKLRQ
54
+ LQSN-------GEPAYRVRTPRLGRS----IDSWRLLDAEGATGMAGGEEAIG--GQFM-
55
+ ---------------------------QRMVKKSVPFKPRL------GKRAQ--------
56
+ -----VCGGD---------------------------------------------
57
+ >Ensembl_Y23B4A.2_Cele
58
+ M------------------LLWIVATLL------IF-SLPVSTALDYNDFSLQRIA----
59
+ -------RAPHPSSALLVPYPRVGKRS---------------NIL---------------
60
+ -------------------------------------------------------NNNSE
61
+ SQN---------SVQKRLYMARVGKR----------------------------------
62
+ ---------------------------------AFFYTPRI------GK-----------
63
+ -------------------------------------------------------
data/data/raw_data/npy_npf.fa ADDED
@@ -0,0 +1,20 @@
1
+ >Uniprot_NPY_Hsap
2
+ MLGNKRLGLSGLTLALSLLVCLGALAEAYPSKPDNPGEDAPAEDMARYYSALRHYINLITRQRYGKRSSPETLISDLLMRESTENVPRTRLEDPAMW
3
+ >Uniprot_PYY_Hsap
4
+ MVFVRRPWPALTTVLLALLVCLGALVDAYPIKPEAPREDASPEELNRYYASLRHYLNLVTRQRYGKRDGPDTLLSKTFFPDGEDRPVRSRSEGPDLW
5
+ >Uniprot_PAHO_Hsap
6
+ MAAARLCLSLLLLSTCVALLLQPLLGAQGAPLEPVYPGDNATPEQMAQYAADLRRYINMLTRPRYGKRHKEDTLAFSEWGSPHAAVPRELSPLDL
7
+ >jgi_108298_Bflo
8
+ MTSVRIFSYVCLLVLIYACVEVTRAQEEEDVEAPEEGKYYKNLANYLRLLTRQRYGRRSAPDYGSRTLYRHPPPYPQDIVHTLDMDGISLSLCISSLNL
9
+ >jgi_187115101_Skow
10
+ MDLKTILLLASLVCMVVCWDERLSARVQRDASDYQAPTAPSRGASLAEWDRYLRELSLYRQYADIQRFGRSDGGANNIHQQTQKNHRSNIWDYLSKKLALE
11
+ >jgi_204449_Ctel
12
+ MKLSQILILLLLGLSVIICSVHANTDDDDARLVMVMSQMHPPKRPEHFRNMDELNVYLDKLRQYYTILGRPRFGRRNVFSEVRVHTIVLYCFCQSRLAPIRCA
13
+ >jgi_204022_Ctel
14
+ MDAKLLLKAMFVLASCLLLLLPTSCSQDMHGMPVRPKVFRNADELRMYLKALNEYFAIVGRPRFGKRSSPSENPAFGEVDVDGNGRVNDDEFDQFAYGYRK
15
+ >jgi_229397_Ctel
16
+ MQKLVLSLLILAAVVMLEVTSQDSMLAPPDRPSEFRSPDELRRYLKALNEYYAIVGRPRFGRSVNKRSAADYLFKPSHKNDYEYLYDERDERFPSPYY
17
+ >jgi_103536_Dpul
18
+ MSSSNNSIQQFLPRSCSLAALVFLVVMAVLAVCVTTTKADGGDVMSGGEGGEMTAMADAIKYLQGLRRYDNSLVRPRFGKRGRLPYFDMEDLPLHPQVCSSSSYF
19
+ >Ensembl_FBtr0083328_NPY_Dmel
20
+ MCQTMRCILVACVALALLAAGCRVEASNSRPPRKNDVNTMADAYKFLQDLDTYYGDRARVRFGKRGSLMDILRNHEMDNINLGKNANNGGEFARGFNEEEIF
data/data/raw_data/npy_npf.fa.aligned.fa ADDED
@@ -0,0 +1,40 @@
1
+ >Uniprot_NPY_Hsap
2
+ MLGN---------KRLGLSGLTLALSLLV---CLGAL-------AE--------AYPSKP
3
+ DNPGEDAPAEDMARYYSALRHYINLITRQRYG-----------------KRSSPETLI--
4
+ ------------------SDLLMRESTENVPRTRLE-----------DP-AMW
5
+ >Uniprot_PYY_Hsap
6
+ MVFV---------RRPWPALTTVLLALLV---CLGAL-------VD--------AYPIKP
7
+ EAPREDASPEELNRYYASLRHYLNLVTRQRYG-----------------KRDGPDTLL--
8
+ ------------------SKTFFPDGEDRPVRSRSE-----------GP-DLW
9
+ >Uniprot_PAHO_Hsap
10
+ MA-----------------AARLCLSLLLLSTCVALLL-QPLLGAQ--------GAPLEP
11
+ VYPGDNATPEQMAQYAADLRRYINMLTRPRYG-----------------KRHKEDTLA--
12
+ ---------------------FSEWGSPHAAVPREL-----------SPLDL-
13
+ >jgi_108298_Bflo
14
+ MTSV---------R-----IFSYVCLLVLIYACVEVTR----AQEE--------EDVEAP
15
+ ----------EEGKYYKNLANYLRLLTRQRYG-----------------RRSAPDYGS--
16
+ ------RTLYRHPPP-YPQDIVHTLDMDGISLS--------LC---ISSLNL-
17
+ >jgi_187115101_Skow
18
+ MD---------------LKTILLLASLVCMVVCWDERL-SARVQRD-------ASDYQAP
19
+ TAPSRGASLAEWDRYLRELSLYRQYADIQRFGRSDGGANNIHQQTQKNHRSNIWDYLS--
20
+ -----------------------------------------------KKLALE
21
+ >jgi_204449_Ctel
22
+ MK-----------------LSQILILLLLGLSVIICSV-HANTDDDDARLVMVMSQMHPP
23
+ KRPEHFRNMDELNVYLDKLRQYYTILGRPRFG-----------------RRNV-------
24
+ ---------------------FSEV------RVHTIVLYC-FCQSRLAPIRCA
25
+ >jgi_204022_Ctel
26
+ MD-----------------AKLLLKAMFVLASCLLLLL-PTSCSQDMHGM---------P
27
+ VRPKVFRNADELRMYLKALNEYFAIVGRPRFG-----------------KRSSPSE----
28
+ ------------------NPAFGEVDVDGNGRVNDDEFDQ-FAYG-YRK----
29
+ >jgi_229397_Ctel
30
+ MQ-------------------KLVLSLLILAAVVMLEV----TSQD--------SMLAPP
31
+ DRPSEFRSPDELRRYLKALNEYYAIVGRPRFGRS-------------VNKRSAADYLFKP
32
+ SHKNDYEYLYDERDERFPSPYY-------------------------------
33
+ >jgi_103536_Dpul
34
+ MSSSNNSIQQFLPRSCSLAALVFLVVMAVLAVCVTTTK------AD-------GGDVMSG
35
+ GEGGEMTAMADAIKYLQGLRRYDNSLVRPRFG-----------------KRGRLPY----
36
+ ---FDMEDLPLHPQVCSSSSYF-------------------------------
37
+ >Ensembl_FBtr0083328_NPY_Dmel
38
+ MCQTM--------R-------------CILVACVALALLAAGCRVE--------ASNSRP
39
+ PRKNDVNTMADAYKFLQDLDTYYGDRARVRFG-----------------KRGSL------
40
+ ------------------MDILRNHEMDNINLGKNANNGGEFARG-FNEEEIF
data/data/raw_data/protostomian_CCAP.fa ADDED
@@ -0,0 +1,14 @@
1
+ >jgi_195692_Ctel
2
+ MNSQWVTSSLLALLLITLLCSMASTCAQEIPQDSMKKRIFCNFDGCYNKRAEAPQKSNTDLDVLMRVYKLLQSRAGGKPSSETNTIVDAEYQPNIDGPRNLLRQLHTIMRDIENN
3
+ >jgi_163724_Lgig
4
+ MICSHFHCLLLASFIVLTVSEDFSPLYLNENEDTNDLLKDTDSLPSSNNIYDSIPPARPPFPLLSLLFSKLKMEGSEKQAVIKRVFCNGFTGCGGRHRGRRRQYTARILKRPFCNNWGCGNGKRALEKVPVQPFGKNLARKRLFCNNYGGCRGGKKRTLYSNWLGKLNGVADNL
5
+ >gi_260739332_Cgig
6
+ MVSFQQSFATCVGILTILSFCQCSQYSYADELLQKNENSKLGVKKLAALLANELLSEDKDITQKDKRVFCNGFFGCSNGKKRSNSMNLNPLDYPVDAPEPETKTDFRKRLFCNTGGCFGRRKRSTSQTLERRLNNRGSKDGNQ
7
+ >gi_121425289_Acal
8
+ MTSSVLSPTSSFLLVLVLNVMLASIPLSAVTADEFFKQAAESKTTVKRSTSGESKPPRLLELIEMRDAVSSMLPVDDTPSLTRNFDGTSGVGDGLQARGSQVPRLFKRVFCNGFTGCGGRFRGRRRQLNEALGKRRLSQQRVGKRPFCNTLGCYNGGRKRHEEE
9
+ >gi_117948139_Ipar
10
+ MTMMHSTPSCVPVGFFLQPVYVLLICTLVQAASSQAQESTSQIKSSESNDLSMKIRHLILRALEQQQQQQQQQAAAADGYTDQEDIALPPYKRVFCNSFGGCRSLKRLFNDEPGSLNPASEDSVQPTGQEADIEKRVFCNSYGGCKSFKRVSANAMKNPALSKNRQR
11
+ >jgi_300598_Dpul
12
+ MTRPLFYSLLMLAWMIISLYISASSSQPLKNNQNDSDSAEEIEQWSFKEKRPFCNAFAGCGRKRSMIKDTKHPPYEKAASNHPRLPNADTKLLDKLFAKIQHQRANFVQLDDPEYY
13
+ >FBtr0084333_CCAP_Dmel
14
+ MRTSMRISLRLLALLACAICSQASLERENNEGTNMANHKLSGVIQWKYEKRPFCNAFTGCGRKRTYPSYPPFSLFKRNEVEEKPYNNEYLSEGLSDLIDINAEPAVENVQKQIMSQAKIFEAIKEASKEIFRQKNKQKMLQNEKEMQQLEERESK
data/data/raw_data/protostomian_CCAP.fa.aligned.fa ADDED
@@ -0,0 +1,42 @@
1
+ >jgi_195692_Ctel
2
+ ---MNSQWVTSS----LLA--LLLITLLCSMASTC--------AQEIPQDSMK-------
3
+ ------------------------------------------------------------
4
+ --KRIFCN-FDGCY-----NKRAEAPQKSNTDLDVLMRVYKL-LQSRAGGKPSSETN---
5
+ -------TIVDAEYQP----------------NIDGPR-------NLLRQLHTIMRDI--
6
+ --------------------ENN
7
+ >jgi_163724_Lgig
8
+ ---MICSHFHCL----LLASFIVLTV---SEDFSP----LYLNENEDTNDLLKDTDSLP-
9
+ -------------------------SSNNIYDSIPPARPPFPLLSLLFSKLKMEGSEKQA
10
+ VIKRVFCNGFTGCGGRHRGRRRQY--------------------TARILKRPFCNNW---
11
+ GCGNGKRALEKVPVQPFGKNLARKRLFCNNYGGCRGGKKRTLYS-NWLGKLNGVA-----
12
+ --------------------DNL
13
+ >gi_260739332_Cgig
14
+ MVSFQQSFATCVG---ILT---ILSFCQCSQYSYA---DELLQKNENSKLGVKKLAAL--
15
+ ----------------------------------------------LANELLSEDKDITQ
16
+ KDKRVFCNGFFGCS---NGKKRSNSMNLNPLDYPVDAPEPET--KTDFRKRLFCNTG---
17
+ GCF--------------------------------GRRKRSTSQ-TLERRLNNRGSKD--
18
+ --------------------GNQ
19
+ >gi_121425289_Acal
20
+ ---MTSSVLSPTSS-FLLV--LVLNVMLASIPLSAVTADEFFKQAAESKTTVKRSTSGES
21
+ KPPRLLELI----------EMRDAVSSMLPVDDTPSLTRNFDGTSGVGDGLQARGSQVPR
22
+ LFKRVFCNGFTGCGGRFRGRRRQLNEALGKRRLS----------QQRVGKRPFCNTL---
23
+ GCYN-------------------------------GGRKRHEEE----------------
24
+ -----------------------
25
+ >gi_117948139_Ipar
26
+ MT-MMHSTPSCVPVGFFLQPVYVLLICTLVQAASS--------QAQESTSQIKSSESND-
27
+ LSMKIRHLILRALEQQQQQQQQQAAAADGYTDQEDIALPPY-------------------
28
+ --KRVFCNSFGGC----RSLKRLFNDEPGSLNPASEDSVQPTGQEADIEKRVFCNSY--G
29
+ GCKSFKRVSANAMKNP----------------ALSKNRQR--------------------
30
+ -----------------------
31
+ >jgi_300598_Dpul
32
+ ---MTRPLFYSLL---MLA-WMIISLYISASSSQP------LKNNQNDSDSAEEIE----
33
+ -QWSFKE-----------------------------------------------------
34
+ --KRPFCNAFAGCG-----RKRSMIKDTKHPPY----------------EKAASN-----
35
+ --------------HP----------------RLPNADTKLLD--KLFAKIQ--------
36
+ --------HQRANFVQLDDPEYY
37
+ >FBtr0084333_CCAP_Dmel
38
+ ---MRTSMRISLR---LLA---LLACAICSQASLE------RENNEGTNMANHKLSGV--
39
+ IQWKY-E-----------------------------------------------------
40
+ --KRPFCNAFTGCG-----RKRTY---PSYPPFSLFK-------RNEVEEKPYNNEYLSE
41
+ GLSD----LIDINAEP----------------AVENVQKQIMSQAKIFEAIKEASKEIFR
42
+ QKNKQKMLQNEKEMQQLEERESK