galaaz 0.4.10 → 0.5.0

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Files changed (163) hide show
  1. checksums.yaml +4 -4
  2. data/README.md +2048 -531
  3. data/Rakefile +3 -2
  4. data/bin/gknit +152 -6
  5. data/bin/gknit-draft +105 -0
  6. data/bin/gknit-draft.rb +28 -0
  7. data/bin/gknit_Rscript +127 -0
  8. data/bin/grun +27 -1
  9. data/bin/gstudio +47 -4
  10. data/bin/{gstudio.rb → gstudio_irb.rb} +0 -0
  11. data/bin/gstudio_pry.rb +7 -0
  12. data/blogs/galaaz_ggplot/galaaz_ggplot.html +10 -195
  13. data/blogs/galaaz_ggplot/galaaz_ggplot.md +404 -0
  14. data/blogs/galaaz_ggplot/galaaz_ggplot_files/figure-html/midwest_rb.png +0 -0
  15. data/blogs/galaaz_ggplot/galaaz_ggplot_files/figure-html/scatter_plot_rb.png +0 -0
  16. data/blogs/gknit/gknit.Rmd +5 -3
  17. data/blogs/gknit/gknit.pdf +0 -0
  18. data/blogs/gknit/lst.rds +0 -0
  19. data/blogs/manual/lst.rds +0 -0
  20. data/blogs/manual/manual.Rmd +826 -53
  21. data/blogs/manual/manual.html +2338 -695
  22. data/blogs/manual/manual.md +2032 -539
  23. data/blogs/manual/manual.pdf +0 -0
  24. data/blogs/manual/manual.tex +1804 -594
  25. data/blogs/manual/manual_files/figure-html/bubble-1.png +0 -0
  26. data/blogs/manual/manual_files/figure-html/diverging_bar.png +0 -0
  27. data/blogs/manual/manual_files/figure-latex/bubble-1.png +0 -0
  28. data/blogs/manual/manual_files/figure-latex/diverging_bar.pdf +0 -0
  29. data/blogs/manual/model.rb +41 -0
  30. data/blogs/nse_dplyr/nse_dplyr.Rmd +226 -73
  31. data/blogs/nse_dplyr/nse_dplyr.html +254 -336
  32. data/blogs/nse_dplyr/nse_dplyr.md +353 -158
  33. data/blogs/oh_my/oh_my.html +274 -386
  34. data/blogs/oh_my/oh_my.md +208 -205
  35. data/blogs/ruby_plot/ruby_plot.html +20 -205
  36. data/blogs/ruby_plot/ruby_plot.md +14 -15
  37. data/blogs/ruby_plot/ruby_plot_files/figure-html/dose_len.png +0 -0
  38. data/blogs/ruby_plot/ruby_plot_files/figure-html/facet_by_delivery.png +0 -0
  39. data/blogs/ruby_plot/ruby_plot_files/figure-html/facet_by_dose.png +0 -0
  40. data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_by_delivery_color.png +0 -0
  41. data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_by_delivery_color2.png +0 -0
  42. data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_with_decorations.png +0 -0
  43. data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_with_jitter.png +0 -0
  44. data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_with_points.png +0 -0
  45. data/blogs/ruby_plot/ruby_plot_files/figure-html/final_box_plot.png +0 -0
  46. data/blogs/ruby_plot/ruby_plot_files/figure-html/final_violin_plot.png +0 -0
  47. data/blogs/ruby_plot/ruby_plot_files/figure-html/violin_with_jitter.png +0 -0
  48. data/examples/Bibliography/master.bib +50 -0
  49. data/examples/Bibliography/stats.bib +72 -0
  50. data/examples/islr/x_y_rnorm.jpg +0 -0
  51. data/examples/latex_templates/Test-acm_article/Makefile +16 -0
  52. data/examples/latex_templates/Test-acm_article/Test-acm_article.Rmd +65 -0
  53. data/examples/latex_templates/Test-acm_article/acm_proc_article-sp.cls +1670 -0
  54. data/examples/latex_templates/Test-acm_article/sensys-abstract.cls +703 -0
  55. data/examples/latex_templates/Test-acm_article/sigproc.bib +59 -0
  56. data/examples/latex_templates/Test-acs_article/Test-acs_article.Rmd +260 -0
  57. data/examples/latex_templates/Test-acs_article/Test-acs_article.pdf +0 -0
  58. data/examples/latex_templates/Test-acs_article/acs-Test-acs_article.bib +11 -0
  59. data/examples/latex_templates/Test-acs_article/acs-my_output.bib +11 -0
  60. data/examples/latex_templates/Test-acs_article/acstest.bib +17 -0
  61. data/examples/latex_templates/Test-aea_article/AEA.cls +1414 -0
  62. data/{blogs/gknit/marshal.dump → examples/latex_templates/Test-aea_article/BibFile.bib} +0 -0
  63. data/examples/latex_templates/Test-aea_article/Test-aea_article.Rmd +108 -0
  64. data/examples/latex_templates/Test-aea_article/Test-aea_article.pdf +0 -0
  65. data/examples/latex_templates/Test-aea_article/aea.bst +1269 -0
  66. data/examples/latex_templates/Test-aea_article/multicol.sty +853 -0
  67. data/examples/latex_templates/Test-aea_article/references.bib +0 -0
  68. data/examples/latex_templates/Test-aea_article/setspace.sty +546 -0
  69. data/examples/latex_templates/Test-amq_article/Test-amq_article.Rmd +256 -0
  70. data/examples/latex_templates/Test-amq_article/Test-amq_article.pdf +0 -0
  71. data/examples/latex_templates/Test-amq_article/Test-amq_article.pdfsync +3397 -0
  72. data/examples/latex_templates/Test-amq_article/pics/Figure2.pdf +0 -0
  73. data/examples/latex_templates/Test-ams_article/Test-ams_article.Rmd +215 -0
  74. data/examples/latex_templates/Test-ams_article/amstest.bib +436 -0
  75. data/examples/latex_templates/Test-asa_article/Test-asa_article.Rmd +153 -0
  76. data/examples/latex_templates/Test-asa_article/Test-asa_article.pdf +0 -0
  77. data/examples/latex_templates/Test-asa_article/agsm.bst +1353 -0
  78. data/examples/latex_templates/Test-asa_article/bibliography.bib +233 -0
  79. data/examples/latex_templates/Test-ieee_article/IEEEtran.bst +2409 -0
  80. data/examples/latex_templates/Test-ieee_article/IEEEtran.cls +6346 -0
  81. data/examples/latex_templates/Test-ieee_article/Test-ieee_article.Rmd +175 -0
  82. data/examples/latex_templates/Test-ieee_article/Test-ieee_article.pdf +0 -0
  83. data/examples/latex_templates/Test-ieee_article/mybibfile.bib +20 -0
  84. data/examples/latex_templates/Test-rjournal_article/RJournal.sty +335 -0
  85. data/examples/latex_templates/Test-rjournal_article/RJreferences.bib +18 -0
  86. data/examples/latex_templates/Test-rjournal_article/RJwrapper.pdf +0 -0
  87. data/examples/latex_templates/Test-rjournal_article/Test-rjournal_article.Rmd +52 -0
  88. data/examples/latex_templates/Test-springer_article/Test-springer_article.Rmd +65 -0
  89. data/examples/latex_templates/Test-springer_article/Test-springer_article.pdf +0 -0
  90. data/examples/latex_templates/Test-springer_article/bibliography.bib +26 -0
  91. data/examples/latex_templates/Test-springer_article/spbasic.bst +1658 -0
  92. data/examples/latex_templates/Test-springer_article/spmpsci.bst +1512 -0
  93. data/examples/latex_templates/Test-springer_article/spphys.bst +1443 -0
  94. data/examples/latex_templates/Test-springer_article/svglov3.clo +113 -0
  95. data/examples/latex_templates/Test-springer_article/svjour3.cls +1431 -0
  96. data/examples/rmarkdown/svm-rmarkdown-anon-ms-example/svm-rmarkdown-anon-ms-example.Rmd +73 -0
  97. data/examples/rmarkdown/svm-rmarkdown-anon-ms-example/svm-rmarkdown-anon-ms-example.pdf +0 -0
  98. data/examples/rmarkdown/svm-rmarkdown-article-example/svm-rmarkdown-article-example.Rmd +382 -0
  99. data/examples/rmarkdown/svm-rmarkdown-article-example/svm-rmarkdown-article-example.pdf +0 -0
  100. data/examples/rmarkdown/svm-rmarkdown-beamer-example/svm-rmarkdown-beamer-example.Rmd +164 -0
  101. data/examples/rmarkdown/svm-rmarkdown-beamer-example/svm-rmarkdown-beamer-example.pdf +0 -0
  102. data/examples/rmarkdown/svm-rmarkdown-cv/svm-rmarkdown-cv.Rmd +92 -0
  103. data/examples/rmarkdown/svm-rmarkdown-cv/svm-rmarkdown-cv.pdf +0 -0
  104. data/examples/rmarkdown/svm-rmarkdown-syllabus-example/attend-grade-relationships.csv +482 -0
  105. data/examples/rmarkdown/svm-rmarkdown-syllabus-example/svm-rmarkdown-syllabus-example.Rmd +280 -0
  106. data/examples/rmarkdown/svm-rmarkdown-syllabus-example/svm-rmarkdown-syllabus-example.pdf +0 -0
  107. data/examples/rmarkdown/svm-xaringan-example/svm-xaringan-example.Rmd +386 -0
  108. data/lib/R_interface/r.rb +1 -1
  109. data/lib/R_interface/r_libs.R +1 -1
  110. data/lib/R_interface/r_methods.rb +10 -0
  111. data/lib/R_interface/rpkg.rb +1 -0
  112. data/lib/R_interface/rsupport.rb +4 -6
  113. data/lib/gknit.rb +2 -0
  114. data/lib/gknit/draft.rb +105 -0
  115. data/lib/gknit/knitr_engine.rb +0 -33
  116. data/lib/util/exec_ruby.rb +1 -27
  117. data/specs/figures/bg.jpeg +0 -0
  118. data/specs/figures/bg.png +0 -0
  119. data/specs/figures/dose_len.png +0 -0
  120. data/specs/figures/no_args.jpeg +0 -0
  121. data/specs/figures/no_args.png +0 -0
  122. data/specs/figures/width_height.jpeg +0 -0
  123. data/specs/figures/width_height.png +0 -0
  124. data/specs/figures/width_height_units1.jpeg +0 -0
  125. data/specs/figures/width_height_units1.png +0 -0
  126. data/specs/figures/width_height_units2.jpeg +0 -0
  127. data/specs/figures/width_height_units2.png +0 -0
  128. data/specs/r_dataframe.spec.rb +11 -11
  129. data/specs/ruby_expression.spec.rb +1 -0
  130. data/specs/tmp.rb +41 -20
  131. data/version.rb +1 -1
  132. metadata +73 -35
  133. data/blogs/galaaz_ggplot/galaaz_ggplot.aux +0 -41
  134. data/blogs/galaaz_ggplot/galaaz_ggplot.out +0 -10
  135. data/blogs/galaaz_ggplot/galaaz_ggplot_files/figure-latex/midwest_rb.pdf +0 -0
  136. data/blogs/galaaz_ggplot/galaaz_ggplot_files/figure-latex/scatter_plot_rb.pdf +0 -0
  137. data/blogs/gknit/gknit.md +0 -1430
  138. data/blogs/gknit/gknit.tex +0 -1358
  139. data/blogs/manual/graph.rb +0 -29
  140. data/blogs/nse_dplyr/nse_dplyr.tex +0 -1373
  141. data/blogs/ruby_plot/ruby_plot.Rmd_external_figs +0 -662
  142. data/blogs/ruby_plot/ruby_plot_files/figure-html/dose_len.svg +0 -57
  143. data/blogs/ruby_plot/ruby_plot_files/figure-html/facet_by_delivery.svg +0 -106
  144. data/blogs/ruby_plot/ruby_plot_files/figure-html/facet_by_dose.svg +0 -110
  145. data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_by_delivery_color.svg +0 -174
  146. data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_by_delivery_color2.svg +0 -236
  147. data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_with_jitter.svg +0 -296
  148. data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_with_points.svg +0 -236
  149. data/blogs/ruby_plot/ruby_plot_files/figure-html/final_box_plot.svg +0 -218
  150. data/blogs/ruby_plot/ruby_plot_files/figure-html/final_violin_plot.svg +0 -128
  151. data/blogs/ruby_plot/ruby_plot_files/figure-html/violin_with_jitter.svg +0 -150
  152. data/blogs/ruby_plot/ruby_plot_files/figure-latex/dose_len.png +0 -0
  153. data/blogs/ruby_plot/ruby_plot_files/figure-latex/facet_by_delivery.png +0 -0
  154. data/blogs/ruby_plot/ruby_plot_files/figure-latex/facet_by_dose.png +0 -0
  155. data/blogs/ruby_plot/ruby_plot_files/figure-latex/facets_by_delivery_color.png +0 -0
  156. data/blogs/ruby_plot/ruby_plot_files/figure-latex/facets_by_delivery_color2.png +0 -0
  157. data/blogs/ruby_plot/ruby_plot_files/figure-latex/facets_with_decorations.png +0 -0
  158. data/blogs/ruby_plot/ruby_plot_files/figure-latex/facets_with_jitter.png +0 -0
  159. data/blogs/ruby_plot/ruby_plot_files/figure-latex/facets_with_points.png +0 -0
  160. data/blogs/ruby_plot/ruby_plot_files/figure-latex/final_box_plot.png +0 -0
  161. data/blogs/ruby_plot/ruby_plot_files/figure-latex/final_violin_plot.png +0 -0
  162. data/blogs/ruby_plot/ruby_plot_files/figure-latex/violin_with_jitter.png +0 -0
  163. data/examples/paper/paper.rb +0 -36
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