galaaz 0.4.10 → 0.5.0

data/examples/latex_templates/Test-ams_article/Test-ams_article.Rmd

@@ -0,0 +1,215 @@
+---
+journal: jhm
+layout: draft
+title: Title here
+author1: Andrew N. Other
+author2: Fred T. Secondauthor
+currentaddress: "Current address: Some other place, Germany"
+affiliation: "American Meteorological Society,Boston, Massachusetts"
+exauthors: 
+  - name: Ping Lu
+    exaffiliation: Princeton University
+    correspondingauthor: "American Meteorological Society, 45 Beacon St., Boston, MA 02108."
+    email: \email{groupleader@unknown.uu}
+  - name: Miao Yu
+    exaffiliation: University of Waterloo
+    currentaddress: "Current address: Some other place, Canada"
+abstract: |
+  Enter the text of your abstract here.  This is a sample American Meteorological Society (AMS) \LaTeX\ template.  This document provides authors with instructions on the use of the AMS \LaTeX\ template.  Authors should refer to the file amspaper.tex to review the actual \LaTeX\ code used to create this document. The template.tex file should be modified by authors for their own manuscript.
+bibliography: amstest.bib
+#output: rticles::ams_article
+output:
+  ruby_template:
+    gem: gknit-draft
+    family: svm
+    template: svm_latex_beamer
+---
+
+# Introduction
+
+This document will provide authors with the basic American Meteorological Society (AMS) formatting guidelines. This document was created using \LaTeX\ and demonstrates how to use the \LaTeX\ template when submitting a manuscript to the AMS.  The following sections will outline the guidelines and formatting for text, math, figures, and tables while using \LaTeX\/ for a submission to the AMS. An attempt to compile amspaper.tex should be made before using the template. The files have been tested on Windows, Linux, and Mac OS using \TeX\ Live 2011 (available online at \url{http://www.tug.org/texlive/}). Feedback and questions should be sent to latex@ametsoc.org. Additional information is available on the AMS \LaTeX\ Submission Info web page (\url{http://www2.ametsoc.org/ams/index.cfm/publications/authors/journal-and-bams-authors/author-resources/latex-author-info/}).
+
+Authors should use the empty template.tex to begin their paper. A valuable source of \LaTeX\ information is the {TeX Frequently Asked Questions} page (available online at \url{faq.tug.org}).
+
+# Formatting text and sections
+
+The text should be divided into sections, each with a separate heading and consecutive numbering. Note, however, that single secondary, tertiary, and quaternary sections remain unnumbered. Each section heading should be placed on a separate line using the appropriate \LaTeX\ commands.
+
+## Secondary headings {-}
+
+Secondary headings labeled with letters are formatted using the `## Secondary headings {-}` for a single subsection within a section or `## Secondary headings` for multiple subsections within one section.
+
+### Tertiary headings {-}
+
+Tertiary headings are formatted using the `### Tertiary headings {-}` for single a subsubsection within a subsection or `### Tertiary headings` for multiple subsubsections within a subsection. 
+
+\paragraph*{Quaternary headings}
+Quaternary headings are formatted using the `\paragraph*{Quaternary headings}` for a single paragraph within a subsubsection or `\paragraph{Quaternary headings}` for multiple paragraphs within a subsection.
+
+# Citations
+
+Citations to standard references in text should consist of the name of the author and the year of publication, for example, @poe12 or [@poe12;@alexander:2002;@Gershunov2012] using the appropriate `@key` or `[@key]` commands, respectively. A variety of citation formats can be used with the natbib package; however, the AMS prefers that authors use only the `@key` and `[@key]` commands. References should be entered in the references.bib file. For a thorough discussion of how to enter references into the references.bib database file following AMS style, please refer to the **AMS_Refs.pdf** document included in this package.
+
+# Formatting math
+
+The following sections will outline the basic formatting rules for mathematical symbols and units.  In addition, a review of the amspaper.tex file will show how this is done with the use of \LaTeX\ commands.  The AMS template provides the American Mathematical Society math, font, symbol, and boldface packages for use in math mode.
+
+## Mathematical symbols
+
+Symbols must be of the same font style both in text discussion and in displayed equations or terms (and figures should be prepared to match). Scalar single-character symbols are set italic, Greek, or script. Examples are $u$, $L$ [note that $\upsilon$ (Greek upsilon) is used instead of *v* (italic "vee") to avoid confusion with $\nu$ (Greek nu) often used for viscosity; this is handled automatically when in \LaTeX\ math mode], $w$, $x$, $y$, $z$, $f$, $g$, $r$, indices such as $i$ or $j$, and constants such as $C_D$, $k$, or $K$. Multiple-character scalar variables, abbreviations, nondimensional numbers, and acronyms for variables are set regular nonitalic: $\mathrm{LWC}$, $\mathrm{Re}$, $\mathrm{Ro}$, $\mathrm{BT}$, $\mathrm{abs}$, $\mathrm{obs}$, $\mathrm{max}$, $\mathrm{min}$, $\mathrm{Re}$/$\mathrm{Im}$ (real/imaginary), etc. For vectors, use boldface nonitalic Times Roman as in $\mathbf{V}$, $\mathbf{v}$, or $\mathbf{x}$, and $\mathbf{i}$, $\mathbf{j}$, and $\mathbf{k}$ unit vectors. Do not use the \LaTeX\ $\backslash vec$ command to denote vectors. For matrix notation, use nonitalic boldface Arial (or sans serif) font as in $\pmb{\mathsf{A}}$, $\pmb{\mathsf{B}}$, or $\pmb{\mathsf{M}}$. Note that you will need to use the $\backslash$pmb command for boldface sans serif; the $\backslash$bm command will not work. All mathematical operator abbreviations/acronyms are set lowercase regular Roman font, except $O$ (on the order of): $\sin$, $\cos$, $\tan$, $\tanh$, $\mathrm{cov}$, $\Pr$ (for probability; note same as Prandtl number), $\mathrm{const}$ (for constant), $\mathrm{c.c.}$ (complex conjugate).
+
+## Units
+
+Units are always set on a single line with a space separating the denominator, which is set with a superscript $-1$, $-2$, and so on, rather than using a slash for "per." Examples are g kg$^{-1}$, m$^2$ s$^{-1}$, Wm$^{-2}$, g m$^{-3}$, and m s$^{-1}$ (note that ms$^{-1}$ is the unit for "per millisecond").
+
+## Equations
+
+Brief equations or terms set inline in text must be set as a single-line expression because page proofs are not double spaced, for example, $\rho^{-1}p/x$ or $(1/{\rho})p/x$ or $(a-b)/(c+d)$; that is, use a superscript $-1$ for the denominator. In case of a more complicated term or equation, it should be set as an unnumbered display equation, such as
+
+$$
+x=\frac{2b\pm\sqrt{b^{2}-4ac}}{2c}.
+$$
+
+Otherwise, numbered display equations can be entered using the appropriate equation command, such as 
+
+\begin{equation}
+x=\frac{2b\pm\sqrt{b^{2}-4ac}}{2c}.  
+\end{equation}
+
+Lists of equations are punctuated as written English, and commas, semicolons, and periods are placed where appropriate. Conjunctions such as "and", "while", "when", or "for" are also typically placed before the final element in a mathematical phrase, as befits the intended mathematical meaning.  
+
+## Figures and tables
+
+The AMS prefers that all figures and tables are placed **at the end of the document** prior to submission. A list of tables and a list of figures will appear near the end of the PDFfile, before the actual tables and figures. These lists are necessary for submission.
+
+For appendix figures and tables, special commands are needed to manually change the numbering to ensure that each appendix figure or table is numbered as part of the respective appendix and not as a continuation of the main paper. Use the command `\appendcaption{}` instead of the usual `caption{}` to adjust the  numbering; for example, for Table A1, you would use the command `\appendcaption{A1}`.
+
+Note that the normal `\ref{}` command cannot be used to cite appendix figures and tables as the numbering will be incorrect. Callouts for appendix figures and tables in the text will need to be written out as plain text, for example, Fig. A1 and Table A1.
+
+### Figures
+
+The insertion of a sample figure (Fig. \ref{f1})  
+and caption is given below (in the .tex document) and at the end of the document. Standard figure sizes are 19 (one column), 27, 33, and 39 (two columns) picas.
+
+\begin{figure}[h]
+ \centerline{\includegraphics[width=19pc]{figure01.pdf}}
+  \caption{Enter the caption for your figure here.  Repeat as
+  necessary for each of your figures.}\label{f1}
+\end{figure}
+
+```{r,echo=FALSE,fig.cap='test the rmd output',fig.align='center',fig.width=3.17}
+plot(1:10)
+```
+
+### Tables
+Each table must be numbered, provided with a caption, and mentioned specifically in the text. 
+See below (in the .tex document) and at the end of the document for the formatting of a sample table (Table
+\ref{t1}).
+
+\begin{table}[h]
+\caption{This is a sample table caption and table layout.}\label{t1}
+\begin{center}
+\begin{tabular}{ccccrrcrc}
+\topline
+$N$ & $X$ & $Y$ & $Z$\\
+\midline
+ 0000 & 0000 & 0010 & 0000 \\
+ 0005 & 0004 & 0012 & 0000 \\
+ 0010 & 0009 & 0020 & 0000 \\
+ 0015 & 0016 & 0036 & 0002 \\
+ 0020 & 0030 & 0066 & 0007 \\
+ 0025 & 0054 & 0115 & 0024 \\
+\botline
+\end{tabular}
+\end{center}
+\end{table}
+
+\acknowledgments
+Keep acknowledgments (note correct spelling: no e between the g and m) as brief as possible. In general, acknowledge only direct help in writing or research. Financial support (e.g., grant numbers) for the work done, for an author, or for the laboratory where the work was performed is best acknowledged here rather than as footnotes to the title or to an author's name. Contribution numbers (if the work has been published by the author's institution or organization) should be included as footnotes on the title page,
+not in the acknowledgments.
+
+Please use The authors thank \ldots rather than The authors would like to thank \ldots.
+
+The author thanks Mats Dahlgren for version one of \textsf{achemso}, and Donald Arseneau for the code taken from \textsf{cite} to move citations after punctuation. Many users have provided feedback on the class, which is reflected in all of the different demonstrations shown in this document.
+
+\appendix[A] 
+
+\appendixtitle{Title of Appendix}
+
+## Appendix section
+
+The AMS template allows authors to format an unlimited number of appendixes. To format a single appendix, use the `\appendix` command with no additional argument. Otherwise, add the appropriate one-letter argument to the `\appendix` command (e.g. `\appendix[A]`, `\appendix[B]`, `\appendix[C]`, etc.) corresponding to the appropriate appendix. 
+
+The title of the appendix can be formatted using the `\appendixtitle{} ` command. The `##` , `###` and `\paragraph` commands are used to create sections within the appendix. (Note that the appendix title takes the place of `#` in the appendix, so the first section should begin with `##` instead of `#`.)
+
+Equations are automatically numbered appropriately for each appendix. Here is an example of the first equation in appendix A, automatically labeled (\ref{eq:1}): 
+
+\begin{equation}
+\label{eq:1}
+x=\frac{2b\pm\sqrt{b^{2}-4ac}}{2c}.  
+\end{equation}
+
+For appendix figures and tables, special commands are needed to manually change the numbering to ensure that each appendix figure or table is numbered as part of the appendix and not as a continuation of the main paper. Use the command `\appendcaption{}` instead of the usual `\caption{}` to adjust the numbering; for example, for Table A1, you would use the command `\appendcaption{A1}`. In-text callouts for each appendix figure and table will need to be written as plain text;the usual `\ref{}` command cannot be used.
+
+\appendix[B]
+\appendixtitle{File Structure of the AMS \LaTeX\ Package}
+
+## AMS \LaTeX\ files
+You will be provided with a tarred, zipped \LaTeX\ package containing 3 files. These files are
+
+\begin{description}
+
+\item
+  your-paper-name.Rmd template for your paper
+\item
+  amstest.bib an example of a bibliographic database file.
+\item
+  figure01.pdf are sample figures.
+
+\end{description}
+
+## Help for Authors
+
+Questions and feedback concerning the use of the AMS \LaTeX\ files should be directed to latex@ametsoc.org or yufreecas@gmail.com(for rmarkdown issues). Additional information is available on the AMS \LaTeX\ Submission Info web page (\url{http://www2.ametsoc.org/ams/index.cfm/publications/authors/journal-and-bams-authors/author-resources/latex-author-info/}).
+
+\appendix[C]
+\appendixtitle{Building a PDF and Submitting Your \LaTeX\ Manuscript Files to the AMS}
+
+## Building your own PDF
+
+There are a variety of different methods and programs that will create a final PDF from your \LaTeX\ files. The easiest method is to download one of the freely available text editors/compilers such as Rstudio to compile your files into a PDF.
+
+## Submitting your files to the AMS for peer review
+
+The AMS uses the Editorial Manager system for all author submissions for peer review. Editorial Manager uses the freely available \TeX\ Live 2011 distribution. This system will automatically generate a PDF from your submitted \LaTeX\ files and figures(not Rmd file, tex files will be produced when you successful knit your Rmd file).  
+
+You should not upload your own PDF into the system. If the system does not build the PDF from your files correctly, refer to the AMS \LaTeX\ FAQ page first for possible solutions. If your PDF still does not build correctly after trying the solutions on the FAQ page, email latex@ametsoc.org for help.
+
+## Other software
+As mentioned above, there is a variety of software that can be used to edit .tex files and build a PDF.  The AMS does not support \LaTeX\/-related WYSIWYG software, such as Scientific Workplace, or WYSIWYM software, such as LyX.  \TeX\ Live (available online at \\ \url{http://www.tug.org/texlive/}) is recommended for users needing an up-to-date \LaTeX\ distribution with software that includes an editor and the ability to automatically generate a PDF.
+
+# References {-}
+\bibliography{references}
+
+\begin{table}
+\appendcaption{A1}{Here is the appendix table caption.}
+\centering
+\begin{tabular}{ccc}
+\topline
+$1$ & $2$ & $3$ \\
+\midline
+a&b&c \\
+d&e&f \\
+\botline
+\end{tabular}
+\end{table}
+
+\begin{figure}
+\centerline{(illustration here)}
+\appendcaption{A1}{Here is the appendix figure caption.}
+\end{figure}
+
+\begin{figure}
+\centerline{(illustration here)}
+\appendcaption{B1}{Here is the appendix figure caption.}
+\end{figure}

data/examples/latex_templates/Test-ams_article/amstest.bib

@@ -0,0 +1,436 @@
+%%
+% JOURNAL ABBREVIATIONS
+%
+@STRING{AMS 	= "Amer.\ Meteor.\ Soc."}
+@STRING{AGU 	= "Amer.\ Geophys.\ Union"}
+@STRING{AIP 	= "Amer. Inst. Phys."}
+@STRING{ADGEO     = "Adv.\ Geosci."}
+@STRING{AFM       = "Agric.\ For.\ Meteor."}
+@STRING{AM        = "Ann.\ Meteor."}
+@STRING{AN        = "Astrophys.\ Norv."}		% Astrophysica Norvegica
+@STRING{AO        = "Atmos.--Ocean"}			% Atmosphere--Ocean, published by Canadian Meteorological Society (CMOS)
+@STRING{AR        = "Atmos.\ Res."}			% Atmospheric Research
+@STRING{ARFM      = "Annu.\ Rev.\ Fluid Mech."}
+@STRING{AUMET     = "Aust.\ Meteor.\ Mag."}
+@STRING{BAMS      = "Bull.\ Amer.\ Meteor.\ Soc."}
+@STRING{CAP       = "Contrib.\ Atmos.\ Phys."}
+@STRING{CC        = "Climate Change"}      % Climate Change 
+@STRING{CCH       = "Climatic Change"}			% Climatic Change
+@STRING{CDYN      = "Climate Dyn."}
+@STRING{CHAOS     = "Chaos"}
+@STRING{COL       = "Collier's"}
+@STRING{CRS       = "Cont.\ Shelf Res."}
+@STRING{DAO       = "Dyn.\ Atmos.\ Oceans"}
+@STRING{ECO       = "Ecology"}
+@STRING{EI        = "Earth Interact."}
+@STRING{GA        = "Geophysica"}			% Geophysica, published by Geophysical Society of Finland 
+@STRING{GEOMAG    = "Geophys.\ Mag."}
+@STRING{GN        = "Geophys.\ Norv."}			% Geophysica Norvegica
+@STRING{GRL       = "Geophys.\ Res.\ Lett."}
+@STRING{GEOINT    = "Geofis.\ Int."}			% Geofisica Internacional (Mexican journal -- vols. 3--5 contained proceedings from a hurricane conference
+@STRING{GEOPUB    = "Geofys.\ Publ."}
+@STRING{GPC       = "Global Planet.\ Change"}
+@STRING{HP        = "Health Phys."}
+@STRING{IAOP      = "Izv.\ Atmos.\ Ocean.\ Phys.\ (Engl.\ Transl.)"}
+@STRING{IJC       = "Int.\ J.\ Climatol."}
+@STRING{JAM       = "J.\ Appl.\ Meteor."}		% renamed to name below in 2006
+@STRING{JAMC      = "J.\ Appl.\ Meteor.\ Climatol."}  	% Journal of Applied Meteorology and Climatology (this journal used to be called the Journal of Applied Meteorology before 2006)
+@STRING{JAS       = "J.\ Atmos.\ Sci."}
+@STRING{JAOT      = "J.\ Atmos.\ Oceanic Technol."}
+@STRING{JCAM      = "J.\ Climate Appl.\ Meteor."}	% from 1983--87, now JAMC
+@STRING{JCLI      = "J.\ Climate"}
+@STRING{JCR       = "J.\ Coastal Res."}
+@STRING{JFM       = "J.\ Fluid\ Mech."}
+@STRING{JEM       = "J.\ Eng.\ Math."}			% Journal of Engineering Mathematics
+@STRING{JGR       = "J.\ Geophys.\ Res."}
+@STRING{JHM       = "J.\ Hydrometeor."}
+@STRING{JMS       = "J.\ Mar.\ Syst."}
+@STRING{JM        = "J.\ Meteor."}
+@STRING{JMR       = "J.\ Mar.\ Res."}
+@STRING{JMSJ      = "J.\ Meteor.\ Soc.\ Japan"}
+@STRING{JPO       = "J.\ Phys.\ Oceanogr."}
+@STRING{JOCEAN    = "J.\ Oceanogr."}			% Journal of Oceanography
+@STRING{JOSJ      = "J.\ Oceanogr.\ Soc.\ Japan"}
+@STRING{JSE       = "J.\ Struct.\ Eng."}	% Journal of Structural Engineering at ASCE
+@STRING{JTM       = "J.\ Tropical Meteor."}
+@STRING{JWEIA     = "J.\ Wind Eng.\ Ind.\ Aerodyn."}
+@STRING{MA        = "Meteor.\ Appl."}
+@STRING{MAP       = "Meteor.\ Atmos.\ Phys."}
+@STRING{METMON    = "Meteor.\ Monogr."}
+@STRING{METZEIT   = "Meteor.\ Z."}
+@STRING{MWL       = "Mar.\ Wea.\ Log"}
+@STRING{MWR       = "Mon.\ Wea.\ Rev."}
+@STRING{NAT       = "Nature"}
+@STRING{NHR       = "Nat.\ Hazards Rev."}
+@STRING{NWD       = "Natl.\ Weather Dig."}
+@STRING{OA        = "Oceanol. Aeta"}
+@STRING{OCEAN     = "Oceanography"}                	% a quarterly journal of The Oceanography Society
+@STRING{PAG       = "Pure Appl.\ Geophys."}
+@STRING{PF        = "Phys.\ Fluids"}
+@STRING{PHYSD     = "Physica D"}
+@STRING{PMG       = "Pap.\ Meteor.\ Geophys."}	% Papers in Meteorology and Geophysics
+@STRING{PNAS      = "Proc.\ Natl.\ Acad.\ Sci.\ (USA)"}
+@STRING{PRE       = "Phys.\ Rev.\ E"}
+@STRING{PRSA      = "Proc.\ Roy.\ Soc."}
+@STRING{PT        = "Phys.\ Today"}
+@STRING{PTRS      = "Philos.\ Trans.\ Roy.\ Soc.\ London"}
+@STRING{QJRMS     = "Quart.\ J.\ Roy.\ Meteor.\ Soc."}
+@STRING{RGEO      = "Rev. Geophys."}
+@STRING{SCI       = "Science"}
+@STRING{SOLA      = "SOLA"}				% Scientific Online Letters on the Atmosphere
+@STRING{TAGU      = "Eos, Trans.\ Amer.\ Geophys.\ Union"}
+@STRING{TELLUS    = "Tellus"}
+@STRING{TCFD      = "Theor.\ Comput.\ Fluid Dyn."}
+@STRING{WEA       = "Weather"}
+@STRING{WW        = "Weatherwise"}
+@STRING{WF        = "Wea.\ Forecasting"}
+@STRING{WMOB      = "WMO Bull."}
+
+%Journal article database entry
+@ARTICLE{Hubert_Whitney1971,
+	AUTHOR = {Hubert, L. F., and Whitney, Jr., L. F.},
+	YEAR = {1971},
+	TITLE = {Wind estimation from geostationary satellite pictures},
+	JOURNAL = MWR,
+	VOLUME = {99},
+	PAGES = {665-672}
+}
+%Journal article database entry (9+ authors)
+@ARTICLE{poe12,
+         AUTHOR = {C. P{\"{o}}hlker and K. T. Wiedemann and B. Sinha and M. Shiraiwa and S. S. Gunthe and
+		M. Smith and H. Su and P. Artaxo and Q. Chen and Y. Cheng and W. Elbert and M. K. Gilles and A. L. D. Kilcoyne
+		and R. C. Moffet and M. Weigand and S. T. Martin and U. P{\"{o}}schl and M. O. Andreae},
+         TITLE = {Biogenic Potassium Salt Particles as Seeds for Secondary Organic Aerosol in the {Amazon}},
+         JOURNAL = {Science},
+         YEAR = {2012},
+         VOLUME = 337,
+         PAGES = {1075--1078}
+}
+%Journal article database entry with DOI
+@ARTICLE{alexander:2002,
+	AUTHOR = {M. A. Alexander and I. Blad{\'{e}} and M. Newman and J. R. Lanzante and N.-C. Lau and J. D. Scott},
+	TITLE = {{T}he Atmospheric Bridge: {T}he Influence of {ENSO} Teleconnections on Air--Sea Interaction over the Global Oceans},
+	JOURNAL = {J. Climate},
+	YEAR = {2002},
+	VOLUME = {15},
+	PAGES = {2205-2231},
+	DOI = {10.1175/1520-0442(2002)015<2205:tabtio>2.0.co;2}
+}
+%Journal article database entry with EID and DOI
+@ARTICLE {Gershunov2012,
+	AUTHOR = {A. Gershunov and K. Guirguis},
+	YEAR = {2012},
+	TITLE = {California heat waves in the present and future},
+	JOURNAL = GRL,
+	VOLUME = {39},
+	EID = {L18710},
+	DOI = {10.1029/2012GL052979}
+}
+%Book database entry
+@BOOK{Oke1979,
+	AUTHOR = {T. R. Oke},
+	YEAR = 1979,
+	TITLE = {Boundary Layer Climates},
+	PUBLISHER = {Wiley and Sons},
+	PAGES = {372}
+}
+%Book database entry
+@BOOK{Chorin_Marsden1993,
+	AUTHOR = {A. J. Chorin and J. E. Marsden},
+	TITLE = {A Mathematical Introduction to Fluid Dynamics},
+	YEAR = {1993},
+	PUBLISHER = {Springer-Verlag},
+	EDITION = {3},
+	PAGES = {169}
+}
+% Chapter in a book database entry
+@INCOLLECTION{Kauranne1990,
+	AUTHOR = {T. Kauranne},
+	YEAR = 1990,
+	TITLE = {An introduction to parallel processing in meteorology},
+	BOOKTITLE = {The Dawn of Massively Parallel Processing in Meteorology},
+	EDITOR = {G. R. Hoffman and D. K. Maretis},
+	PUBLISHER = {Springer-Verlag},
+	PAGES = {3-20}
+}
+%Multivolume book database entry
+@BOOK{Courant_Hilbert1953,
+	AUTHOR = {R. Courant and D. Hilbert},
+	YEAR = 1953,
+	TITLE = {Methods of Mathematical Physics},
+	VOLUME = 1,
+	PUBLISHER = {Wiley-Interscience},
+	PAGES = 560
+}
+%Multivolume book database entry
+@BOOK{Pettersson1956,
+	AUTHOR = {S. Pettersson},
+	YEAR = 1956,
+	TITLE = {Weather Analysis and Forecasting},
+	VOLUME = 2,
+	SERIES = {Motion and Motion Systems},
+	PUBLISHER = {McGraw Hill},
+	PAGES = 428
+}
+
+%Chapter in multivolume book entry
+@INCOLLECTION{Tukey1993,
+AUTHOR = {J. W. Tukey},
+	YEAR = 1993,
+	TITLE = {The problem of multiple comparisons},
+	BOOKTITLE = {{Multiple Comparisons: 1948--1983}},
+	EDITOR = {H. I. Braun},
+	VOLUME = {VIII},
+	SERIES = {\textit{The Collected Works of John W. Tukey}},
+	EDITION = {2},
+	PUBLISHER = {Chapman Hall},
+	PAGES = {1-300}}
+
+
+%Series database entry
+@BOOK{Andrews_Holton_Leovoy1987,
+	AUTHOR = {D. G. Andrews and J. R. Holton and C. B. Leovy},
+	YEAR = 1987,
+	TITLE = {Middle Atmosphere Dynamics},
+	SERIES = {International Geophysical Series},
+	VOLUME = 40,
+	PUBLISHER = {Academic Press},
+	PAGES = 489
+}
+%Chapter of a volume in a series entry
+@INCOLLECTION{Hartmann1993,
+	AUTHOR = {D. L. Hartmann},
+	YEAR = 1993,
+	TITLE = {Radiative effects of clouds on earth's climate},
+	BOOKTITLE = {{Aerosol--Cloud--Climate Interactions}},
+	EDITOR = {P. V. Hobbs},
+	SERIES = {International Geophysics Series},
+	VOLUME = {54},
+	PUBLISHER = {Academic Press},
+	PAGES = {151-173}
+}
+%Report database entry
+@TECHREPORT{Gannon1978,
+	AUTHOR = {P. T. Gannon},
+	YEAR = 1978,
+	TITLE = {Influences of earth surface and cloud properties in the south {F}lorida sea breeze},
+	TYPE = {NOAA Tech. Rep.},
+	NUMBER = {ERL402-NHELM2},
+	INSTITUTION = {NOAA},
+	ADDRESS = {Silver Spring, MD},
+	PAGES = 91,
+	NOTE = {[NTIS PB-297398.]}
+}
+%Note database entry
+@TECHREPORT{Anthes1987,
+  AUTHOR  = {R. A. Anthes and E.-Y. Hsie and Y.-H. Kuo},
+	YEAR    = 1987,
+	TITLE   = {Description of the {P}enn {S}tate/{NCAR} {M}esoscale {M}odel {V}ersion 4 ({MM4})},
+	TYPE    = {NCAR Tech. Note},
+	NUMBER  = {NCAR/TN-282+STR},
+	PAGES   = 66,
+	NOTE = {[doi:10.5065/D64B2Z90]}
+}
+%Memo database entry
+@TECHREPORT{Ferber1986,
+AUTHOR = {G.~J. Ferber and J.~L. Heffter and R.~R. Draxler and R.~J. Lagomarsino and F.~L. Thomas and R.~N. Dietz},
+	YEAR = 1986,
+	TITLE = {{Cross-Appalachian Tracer Experiment (CAPTEX ‘83) final report}},
+	TYPE = {NOAA Tech. Memo.},
+	NUMBER = {ERL ARL-142},
+	INSTITUTION = {NOAA/Air Resources Laboratory},
+	ADDRESS = {Silver Spring, MD},
+	PAGES = 60,
+	NOTE = {[Available online at \url{http://www.arl.noaa.gov/documents/reports/arl-142.pdf}.]}
+}
+%Memo database entry
+@TECHREPORT{Chen1979,
+	AUTHOR  = {T. C. Chen},
+	YEAR    = 1979,
+	TITLE   = {On the Kinetic Energy of the Divergent and Nondivergent Flow in the Atmosphere},
+	TYPE    = {Tech. {M}emo to the {N}ational {S}cience {F}oundation},
+  HOWPUBLISHED = {Grant GA-161660},
+	INSTITUTION = {Iowa State University},
+	ADDRESS = {Ames, IA},
+	PAGES   = 143
+}
+%Report database entry
+@TECHREPORT{Wentz1990,
+	AUTHOR  = {F. J. Wentz},
+	YEAR    = 1990,
+	TITLE   = {West Coast Storm Forecasting with {SSM/I}. {V}ol. {I}},
+	TYPE    = {Final {T}ech. {R}ep.},
+	INSTITUTION = {Remote Sensing Systems},
+	PAGES   = 42,
+	NOTE    = {[Available from Remote Sensing Systems, 1101 College Ave., Suite 220, Santa Rosa, CA 95404.]}
+}
+%Article in report entry
+@INPROCEEDINGS{Shibata2002,
+AUTHOR = {A. Shibata},
+	YEAR = 2002,
+	TITLE = {{AMSR/AMSR-E} sea surface wind speed algorithm},
+	BOOKTITLE = {{\rm Improving our understanding of climate change: {Observing} our water planet using {AMSR} and {AMSR-E}}},
+	PUBLISHER = {{Japan Aerospace Exploration Agency EORC Bull./Tech. Rep.}},
+	PAGES = {45-46},
+	NOTE = {[Available online at \url{http://sharaku.eorc.jaxa.jp/AMSR/doc/alg/8_alg.pdf}.]}
+}
+%Preprints database entry
+@INPROCEEDINGS{Lhermitte_Gilet1976,
+	AUTHOR  = {R. Lhermitte and M. Gilet},
+	YEAR    = 1976,
+	TITLE   = {Aquisition and Processing of Tri-{D}oppler Radar Data},
+	BOOKTITLE = {{\rm Preprints,} 17th Conf.\ on Radar Meteorology},
+	ADDRESS = {Seattle, WA},
+	ORGANIZATION = AMS,
+	PAGES   = {1-6},
+}
+%Proceeding database entry
+@INPROCEEDINGS{Liu2006,
+AUTHOR = {Y. Liu and V. Bringi and M. Maki},
+	YEAR = 2006,
+	TITLE = {Improved rain attenuation correction algorithms for radar reflectivity and differential reflectivity with adaptation to drop shape model variation},
+	BOOKTITLE = {Proc. IEEE Int. Conf. on Geoscience and Remote Sensing Symp. 2006},
+	ADDRESS = {Denver, CO},
+	ORGANIZATION = {Institute of Electrical and Electronics Engineers},
+	PAGES = {1910-1913}
+}
+%Extended Abastracts database entry
+@INPROCEEDINGS{FukutaEA1984,
+	AUTHOR  = {N. Fukuta and H. S. Chang and J. L. Sutherland and D. A. Griffith},
+	YEAR    = 1984,
+	TITLE   = {Comparative Airborne Tests of Vapor-Activated Methaldehyde and Silver Iodide Particles in Supercooled Stratus Clouds},
+	BOOKTITLE = {Extended Abstracts, Ninth Conf. on Weather Modification},
+	ADDRESS = {Park City, UT},
+	ORGANIZATION = AMS,
+	PAGES   = {6-7}
+}
+%Conference Preprints/Proceedings/Extended Abstracts online database entry
+@CONFERENCE{Kuji_Nakajima2002,
+AUTHOR = {M. Kuji and T. Nakajima},
+	YEAR = 2002,
+	TITLE = {Retrieval of cloud geometrical parameters using remote sensing data},
+	BOOKTITLE = {11th Conf. on Cloud Physics},
+	ADDRESS = {Ogden, UT},
+	ORGANIZATION = {Amer. Meteor. Soc.},
+	PAGES = {JP1.7},
+	NOTE = {[Available online at \url{http://ams.confex.com/ams/pdfpapers/39550.pdf}.]}
+}
+%Thesis Ph.D. database entry
+@PHDTHESIS{Cheng1993,
+	AUTHOR  = {X. Cheng},
+	YEAR    = 1993, 
+	TITLE   = {Linear and Nonlinear Aspects of {N}orthern {H}emisphere Wintertime Variability in the 500 mb Height Field},
+	SCHOOL  = {University of Washington},
+	PAGES   = 180,
+	NOTE    = {[Available from University Microfilm, 305 N. Zeeb Rd., Ann Arbor, MI 48106.]}
+}
+%Thesis Master's database entry
+@MASTERSTHESIS{Hirschberg1988,
+	AUTHOR  = {P. Hirschberg},
+	YEAR    = 1988, 
+	TITLE   = {The Saline Flow into the {A}tlantic},
+	DEPARTMENT = {Dept. of Oceanographic Studies},
+	SCHOOL  = {The Pennsylvania State University},
+	PAGES   = 207,
+	NOTE    = {[NTIS PH-358930-2.]}
+}
+%Thesis database entry
+@MASTERSTHESIS{Estournel1988,
+	AUTHOR  = {C. Estournel},
+	YEAR    = 1988, 
+	TITLE   = {Etude de la phase nocturne de la couche limite atmospherique},
+	TYPE    = {These doctorat d'etat 1361},
+	SCHOOL  = {Universit{\'e} Paul Sabatier},
+	PAGES   = 161,
+	NOTE    = {[Available from Universit{\'e} Paul Sabatier, 118 route de Narbonne 31062, Toulouse, France.]}
+}
+%Monograph database entry
+@INCOLLECTION{Braham1981,
+	AUTHOR  = {Braham, Jr., R. R.},
+	YEAR    = 1981,
+	TITLE = {Urban Precipitation Processes},
+	BOOKTITLE = {{Metromex: A Review and Summary}},
+	SERIES = {\textit {Meteor. Monogr.}},
+	NUMBER = 40,
+	PUBLISHER = {Amer. Meteor. Soc.},
+	PAGES = {75-116}
+}
+%Entire monograph entry (AGU)
+@BOOK{Seidov2001,
+	EDITOR = {D. Seidov and B. J. Haupt and M. Maslin},
+	YEAR = 1987,
+	TITLE = {{The Oceans and Rapid Climate Change: Past, Present, and Future}},
+	SERIES = {\textit{Geophys. Monogr.}},
+	VOLUME = 126,
+	PUBLISHER = {Amer. Geophys. Union},
+	PAGES = 294
+}
+%Entire monograph entry (AMS)
+@BOOK{Blumen1990,
+	EDITOR = {W. Blumen},
+	YEAR = 1990,
+	TITLE = {{Atmospheric Processes over Complex Terrain}},
+	SERIES = {\textit{Meteor. Monogr.}},
+	NUMBER = 45,
+	PUBLISHER = {Amer. Meteor. Soc.},
+	PAGES = 323
+}
+%Atlas database entry
+@BOOK{Levitus1982,
+	AUTHOR  = {S. Levitus},
+	YEAR    = 1982,
+	TITLE   = {Climatological Atlas of the World Ocean},
+	PUBLISHER = {National Oceanic and Atmospheric Administration},
+	PAGES   = 173
+}
+%Atlas database entry
+@INCOLLECTION{Bumpus_Lauzier1965,
+	AUTHOR = {D. F. Bumpus and L. M. Lauzier},
+	YEAR = 1965,
+	TITLE = {Surface circulation on the continental shelf off eastern {N}orth {A}merica between {N}ewfoundland and {F}lorida},
+	BOOKTITLE = {Serial Atlas of the Marine Environment},
+	PUBLISHER = {American Geographical Society},
+	NOTE = {{F}olio 7, {P}late 8, 4 pp}
+}
+%Website database entry
+@MISC{AMS2013,
+	AUTHOR = {{American Meteorological Society}},
+	YEAR = {cited 2013},
+	TITLE = {{Authors Guide: References}},
+	NOTE = {[Available online at \url{http://www2.ametsoc.org/ams/index.cfm/publications/authors/journal-and-bams-authors/journal-and-bams-authors-guide/references/}]}
+}
+%Software database entry
+@MISC{Smith1991,
+	AUTHOR  = {J. Smith},
+	YEAR    = 1991,
+	TITLE   = {{FORTRAN} {H}-extended {V}ersion 2.3},
+	NOTE    = {IBM}
+}
+%Digital media database entry
+@MISC{Jackson_Cosh,
+	AUTHOR  = {T. J. Jackson and M. H. Cosh},
+	YEAR    = 2003,
+	TITLE   = {{SMEX02} watershed soil moisture data, {W}alnut {C}reek, {I}owa},
+	PUBLISHER = {National Snow and Ice Data Center, Boulder, CO},
+	NOTE    = {digital media. [Available online at \url{http://nsidc.org/data/nsidc-0143.html}.]}
+}
+%Corrigendum database entry
+@ARTICLE{Charlton_Polvani2007,
+	AUTHOR = {A. J. Charlton and L. M. Polvani},
+	YEAR = 2007,
+	TITLE = {{A new look at stratospheric sudden warmings. Part I: Climatology and modeling benchmarks}},
+	JOURNAL = {J. Climate},
+	VOLUME = 20,
+	PAGES = {449-469},
+	DOI = {10.1175/JCLI3996.1},
+	NOTE = {{C}orrigendum, \textbf{24,} 5951, doi:10.1175/JCLI-D-11-00348.1} 
+}
+%In press database entry
+@ARTICLE{Santanello2013,
+	AUTHOR = {Santanello, Jr., J. A., and S. V. Kumar and C. D. Peters-Lidard and K. Harrison and S. Zhou},
+	YEAR = 2013,
+	TITLE = {Impact of Land Model Calibration on Coupled Land--Atmosphere Prediction},
+	JOURNAL = {J. Hydrometeor.},
+	DOI = {10.1175/JHM-D-12-0127.1},
+	NOTE = {in press}
+}