bio 0.7.0

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  1. data/bin/bioruby +107 -0
  2. data/bin/br_biofetch.rb +59 -0
  3. data/bin/br_bioflat.rb +294 -0
  4. data/bin/br_biogetseq.rb +57 -0
  5. data/bin/br_pmfetch.rb +431 -0
  6. data/doc/BioRuby.rd.ja +225 -0
  7. data/doc/Changes-0.7.rd +236 -0
  8. data/doc/Design.rd.ja +341 -0
  9. data/doc/KEGG_API.rd +1437 -0
  10. data/doc/KEGG_API.rd.ja +1399 -0
  11. data/doc/TODO.rd.ja +138 -0
  12. data/doc/Tutorial.rd +1138 -0
  13. data/doc/Tutorial.rd.ja +2110 -0
  14. data/etc/bioinformatics/seqdatabase.ini +210 -0
  15. data/lib/bio.rb +256 -0
  16. data/lib/bio/alignment.rb +1906 -0
  17. data/lib/bio/appl/bl2seq/report.rb +350 -0
  18. data/lib/bio/appl/blast.rb +269 -0
  19. data/lib/bio/appl/blast/format0.rb +1402 -0
  20. data/lib/bio/appl/blast/format8.rb +95 -0
  21. data/lib/bio/appl/blast/report.rb +652 -0
  22. data/lib/bio/appl/blast/rexml.rb +151 -0
  23. data/lib/bio/appl/blast/wublast.rb +553 -0
  24. data/lib/bio/appl/blast/xmlparser.rb +222 -0
  25. data/lib/bio/appl/blat/report.rb +392 -0
  26. data/lib/bio/appl/clustalw.rb +191 -0
  27. data/lib/bio/appl/clustalw/report.rb +154 -0
  28. data/lib/bio/appl/emboss.rb +68 -0
  29. data/lib/bio/appl/fasta.rb +262 -0
  30. data/lib/bio/appl/fasta/format10.rb +428 -0
  31. data/lib/bio/appl/fasta/format6.rb +37 -0
  32. data/lib/bio/appl/genscan/report.rb +570 -0
  33. data/lib/bio/appl/hmmer.rb +129 -0
  34. data/lib/bio/appl/hmmer/report.rb +556 -0
  35. data/lib/bio/appl/mafft.rb +222 -0
  36. data/lib/bio/appl/mafft/report.rb +119 -0
  37. data/lib/bio/appl/psort.rb +555 -0
  38. data/lib/bio/appl/psort/report.rb +473 -0
  39. data/lib/bio/appl/sim4.rb +134 -0
  40. data/lib/bio/appl/sim4/report.rb +501 -0
  41. data/lib/bio/appl/sosui/report.rb +166 -0
  42. data/lib/bio/appl/spidey/report.rb +604 -0
  43. data/lib/bio/appl/targetp/report.rb +283 -0
  44. data/lib/bio/appl/tmhmm/report.rb +238 -0
  45. data/lib/bio/command.rb +166 -0
  46. data/lib/bio/data/aa.rb +354 -0
  47. data/lib/bio/data/codontable.rb +740 -0
  48. data/lib/bio/data/na.rb +226 -0
  49. data/lib/bio/db.rb +340 -0
  50. data/lib/bio/db/aaindex.rb +280 -0
  51. data/lib/bio/db/embl/common.rb +332 -0
  52. data/lib/bio/db/embl/embl.rb +446 -0
  53. data/lib/bio/db/embl/sptr.rb +954 -0
  54. data/lib/bio/db/embl/swissprot.rb +32 -0
  55. data/lib/bio/db/embl/trembl.rb +31 -0
  56. data/lib/bio/db/embl/uniprot.rb +32 -0
  57. data/lib/bio/db/fantom.rb +604 -0
  58. data/lib/bio/db/fasta.rb +869 -0
  59. data/lib/bio/db/genbank/common.rb +299 -0
  60. data/lib/bio/db/genbank/ddbj.rb +34 -0
  61. data/lib/bio/db/genbank/genbank.rb +354 -0
  62. data/lib/bio/db/genbank/genpept.rb +73 -0
  63. data/lib/bio/db/genbank/refseq.rb +31 -0
  64. data/lib/bio/db/gff.rb +106 -0
  65. data/lib/bio/db/go.rb +497 -0
  66. data/lib/bio/db/kegg/brite.rb +51 -0
  67. data/lib/bio/db/kegg/cell.rb +88 -0
  68. data/lib/bio/db/kegg/compound.rb +130 -0
  69. data/lib/bio/db/kegg/enzyme.rb +125 -0
  70. data/lib/bio/db/kegg/expression.rb +173 -0
  71. data/lib/bio/db/kegg/genes.rb +293 -0
  72. data/lib/bio/db/kegg/genome.rb +362 -0
  73. data/lib/bio/db/kegg/glycan.rb +213 -0
  74. data/lib/bio/db/kegg/keggtab.rb +418 -0
  75. data/lib/bio/db/kegg/kgml.rb +299 -0
  76. data/lib/bio/db/kegg/ko.rb +178 -0
  77. data/lib/bio/db/kegg/reaction.rb +97 -0
  78. data/lib/bio/db/litdb.rb +131 -0
  79. data/lib/bio/db/medline.rb +317 -0
  80. data/lib/bio/db/nbrf.rb +199 -0
  81. data/lib/bio/db/pdb.rb +38 -0
  82. data/lib/bio/db/pdb/atom.rb +60 -0
  83. data/lib/bio/db/pdb/chain.rb +117 -0
  84. data/lib/bio/db/pdb/model.rb +106 -0
  85. data/lib/bio/db/pdb/pdb.rb +1682 -0
  86. data/lib/bio/db/pdb/residue.rb +122 -0
  87. data/lib/bio/db/pdb/utils.rb +234 -0
  88. data/lib/bio/db/prosite.rb +616 -0
  89. data/lib/bio/db/rebase.rb +417 -0
  90. data/lib/bio/db/transfac.rb +387 -0
  91. data/lib/bio/feature.rb +201 -0
  92. data/lib/bio/io/brdb.rb +103 -0
  93. data/lib/bio/io/das.rb +471 -0
  94. data/lib/bio/io/dbget.rb +212 -0
  95. data/lib/bio/io/ddbjxml.rb +614 -0
  96. data/lib/bio/io/fastacmd.rb +123 -0
  97. data/lib/bio/io/fetch.rb +114 -0
  98. data/lib/bio/io/flatfile.rb +496 -0
  99. data/lib/bio/io/flatfile/bdb.rb +266 -0
  100. data/lib/bio/io/flatfile/index.rb +1308 -0
  101. data/lib/bio/io/flatfile/indexer.rb +778 -0
  102. data/lib/bio/io/higet.rb +92 -0
  103. data/lib/bio/io/keggapi.rb +863 -0
  104. data/lib/bio/io/pubmed.rb +189 -0
  105. data/lib/bio/io/registry.rb +308 -0
  106. data/lib/bio/io/soapwsdl.rb +114 -0
  107. data/lib/bio/io/sql.rb +428 -0
  108. data/lib/bio/location.rb +650 -0
  109. data/lib/bio/pathway.rb +991 -0
  110. data/lib/bio/reference.rb +308 -0
  111. data/lib/bio/sequence.rb +593 -0
  112. data/lib/bio/shell.rb +51 -0
  113. data/lib/bio/shell/core.rb +512 -0
  114. data/lib/bio/shell/plugin/codon.rb +228 -0
  115. data/lib/bio/shell/plugin/entry.rb +85 -0
  116. data/lib/bio/shell/plugin/flatfile.rb +119 -0
  117. data/lib/bio/shell/plugin/keggapi.rb +187 -0
  118. data/lib/bio/shell/plugin/midi.rb +448 -0
  119. data/lib/bio/shell/plugin/obda.rb +63 -0
  120. data/lib/bio/shell/plugin/seq.rb +238 -0
  121. data/lib/bio/shell/session.rb +214 -0
  122. data/lib/bio/util/color_scheme.rb +214 -0
  123. data/lib/bio/util/color_scheme/buried.rb +78 -0
  124. data/lib/bio/util/color_scheme/helix.rb +78 -0
  125. data/lib/bio/util/color_scheme/hydropathy.rb +83 -0
  126. data/lib/bio/util/color_scheme/nucleotide.rb +50 -0
  127. data/lib/bio/util/color_scheme/strand.rb +78 -0
  128. data/lib/bio/util/color_scheme/taylor.rb +69 -0
  129. data/lib/bio/util/color_scheme/turn.rb +78 -0
  130. data/lib/bio/util/color_scheme/zappo.rb +69 -0
  131. data/lib/bio/util/contingency_table.rb +337 -0
  132. data/lib/bio/util/sirna.rb +306 -0
  133. data/lib/bioruby.rb +34 -0
  134. data/sample/biofetch.rb +475 -0
  135. data/sample/color_scheme_na.rb +99 -0
  136. data/sample/dbget +37 -0
  137. data/sample/fasta2tab.rb +99 -0
  138. data/sample/fsplit.rb +51 -0
  139. data/sample/gb2fasta.rb +31 -0
  140. data/sample/gb2tab.rb +325 -0
  141. data/sample/gbtab2mysql.rb +161 -0
  142. data/sample/genes2nuc.rb +33 -0
  143. data/sample/genes2pep.rb +33 -0
  144. data/sample/genes2tab.rb +81 -0
  145. data/sample/genome2rb.rb +29 -0
  146. data/sample/genome2tab.rb +76 -0
  147. data/sample/goslim.rb +311 -0
  148. data/sample/gt2fasta.rb +47 -0
  149. data/sample/pmfetch.rb +42 -0
  150. data/sample/pmsearch.rb +42 -0
  151. data/sample/psortplot_html.rb +222 -0
  152. data/sample/ssearch2tab.rb +96 -0
  153. data/sample/tdiary.rb +158 -0
  154. data/sample/tfastx2tab.rb +100 -0
  155. data/sample/vs-genes.rb +212 -0
  156. data/test/data/SOSUI/sample.report +11 -0
  157. data/test/data/TMHMM/sample.report +21 -0
  158. data/test/data/blast/eco:b0002.faa +15 -0
  159. data/test/data/blast/eco:b0002.faa.m0 +128 -0
  160. data/test/data/blast/eco:b0002.faa.m7 +65 -0
  161. data/test/data/blast/eco:b0002.faa.m8 +1 -0
  162. data/test/data/embl/AB090716.embl +65 -0
  163. data/test/data/genscan/sample.report +63 -0
  164. data/test/data/prosite/prosite.dat +2233 -0
  165. data/test/data/refseq/nm_126355.entret +64 -0
  166. data/test/data/uniprot/p53_human.uniprot +1456 -0
  167. data/test/runner.rb +10 -0
  168. data/test/unit/bio/appl/blast/test_report.rb +427 -0
  169. data/test/unit/bio/appl/blast/test_xmlparser.rb +400 -0
  170. data/test/unit/bio/appl/genscan/test_report.rb +195 -0
  171. data/test/unit/bio/appl/sosui/test_report.rb +94 -0
  172. data/test/unit/bio/appl/targetp/test_report.rb +159 -0
  173. data/test/unit/bio/appl/test_blast.rb +159 -0
  174. data/test/unit/bio/appl/test_fasta.rb +142 -0
  175. data/test/unit/bio/appl/tmhmm/test_report.rb +139 -0
  176. data/test/unit/bio/data/test_aa.rb +103 -0
  177. data/test/unit/bio/data/test_codontable.rb +120 -0
  178. data/test/unit/bio/data/test_na.rb +89 -0
  179. data/test/unit/bio/db/embl/test_common.rb +130 -0
  180. data/test/unit/bio/db/embl/test_embl.rb +227 -0
  181. data/test/unit/bio/db/embl/test_sptr.rb +268 -0
  182. data/test/unit/bio/db/embl/test_uniprot.rb +44 -0
  183. data/test/unit/bio/db/kegg/test_genes.rb +58 -0
  184. data/test/unit/bio/db/test_fasta.rb +263 -0
  185. data/test/unit/bio/db/test_gff.rb +140 -0
  186. data/test/unit/bio/db/test_prosite.rb +1450 -0
  187. data/test/unit/bio/io/test_ddbjxml.rb +87 -0
  188. data/test/unit/bio/io/test_soapwsdl.rb +45 -0
  189. data/test/unit/bio/shell/plugin/test_seq.rb +175 -0
  190. data/test/unit/bio/test_alignment.rb +1028 -0
  191. data/test/unit/bio/test_command.rb +71 -0
  192. data/test/unit/bio/test_db.rb +109 -0
  193. data/test/unit/bio/test_feature.rb +128 -0
  194. data/test/unit/bio/test_location.rb +51 -0
  195. data/test/unit/bio/test_pathway.rb +485 -0
  196. data/test/unit/bio/test_sequence.rb +386 -0
  197. data/test/unit/bio/test_shell.rb +31 -0
  198. data/test/unit/bio/util/test_color_scheme.rb +45 -0
  199. data/test/unit/bio/util/test_contingency_table.rb +106 -0
  200. data/test/unit/bio/util/test_sirna.rb +258 -0
  201. metadata +295 -0
@@ -0,0 +1,64 @@
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+ LOCUS NM_126355 615 bp mRNA linear PLN 25-JAN-2005
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+ DEFINITION Arabidopsis thaliana Toll-Interleukin-Resistance (TIR)
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+ domain-containing protein (At2g03030) mRNA, complete cds.
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+ ACCESSION NM_126355
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+ VERSION NM_126355.1 GI:18395472
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+ KEYWORDS .
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+ SOURCE Arabidopsis thaliana (thale cress)
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+ ORGANISM Arabidopsis thaliana
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+ Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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+ Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons;
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+ rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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+ COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
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+ NCBI review. This record is derived from an annotated genomic
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+ sequence (NC_003071). The reference sequence was derived from
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+ mrna.At2g03030.1.
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+ FEATURES Location/Qualifiers
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+ source 1..615
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+ /organism="Arabidopsis thaliana"
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+ /mol_type="mRNA"
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+ /db_xref="taxon:3702"
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+ /chromosome="2"
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+ /map="unknown"
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+ /clone="CHR2v01212004"
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+ /ecotype="Columbia"
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+ gene 1..615
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+ /locus_tag="At2g03030"
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+ /note="synonym: T17M13.20; Toll-Interleukin-Resistance
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+ (TIR) domain-containing protein"
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+ /db_xref="GeneID:814832"
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+ CDS 1..615
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+ /locus_tag="At2g03030"
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+ /note="domain signature TIR exists, suggestive of a
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+ disease resistance protein;
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+ go_function: defense/immunity protein activity [goid
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+ 0003793];
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+ go_process: defense response signaling pathway,
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+ resistance-gene dependent [goid 0009870]"
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+ /codon_start=1
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+ /product="Toll-Interleukin-Resistance (TIR)
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+ domain-containing protein"
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+ /protein_id="NP_178403.1"
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+ /db_xref="GI:15227520"
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+ /db_xref="GeneID:814832"
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+ /translation="MTFFSPTQVFLNYRGEQLRRSFVSHLIDAFERNEINFFVDKYEQ
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+ RGKDLKNLFLRIQESKIALAIFSTRYTESSWCLDELVKIKKLADKKKLHVIPIFYKVK
46
+ VEDVRKQTGEFGDNFWTLAKVSSGDQIKKWKEALECIPNKMGLSLGDKSSEADFIKEV
47
+ VKAVQCVVATIGLEEEEENHFGKKKRKDCKCELPDLKKSRTKKL"
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+ misc_feature 22..423
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+ /locus_tag="At2g03030"
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+ /note="TIR; Region: Toll - interleukin 1 - resistance"
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+ /db_xref="CDD:22729"
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+ ORIGIN
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+ 1 atgacattct tctctcccac tcaggtgttt ttgaactaca ggggagaaca actgcgtcgc
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+ 61 agcttcgtga gccacctcat tgatgccttt gaaaggaatg agatcaactt cttcgtagac
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+ 121 aaatacgaac agagaggcaa agacctcaaa aatctctttc ttaggatcca agagtcgaag
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+ 181 atcgcgcttg ccatcttctc aaccagatac acggagtcaa gctggtgttt ggatgagttg
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+ 241 gtgaagataa agaaacttgc tgataaaaaa aaactccatg tcattccaat tttctacaag
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+ 301 gtgaaggtag aagacgttcg aaaacagaca ggtgagtttg gtgacaactt ctggacgctg
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+ 361 gcaaaggttt caagtggtga tcagatcaag aaatggaaag aagccttgga atgtatcccc
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+ 421 aacaagatgg gtttgtcgtt gggagacaag agttctgaag cagatttcat caaggaagtt
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+ 481 gttaaggcgg ttcagtgtgt tgtagcaacg attggacttg aggaagaaga agagaatcat
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+ 541 tttgggaaaa agaagagaaa ggattgcaaa tgtgagcttc ctgatttgaa gaaaagcaga
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+ 601 accaaaaagt tgtga
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+ //
@@ -0,0 +1,1456 @@
1
+ ID P53_HUMAN STANDARD; PRT; 393 AA.
2
+ AC P04637; Q15086; Q15087; Q15088; Q16535; Q16807; Q16808; Q16809;
3
+ AC Q16810; Q16811; Q16848; Q86UG1; Q8J016; Q99659; Q9BTM4; Q9HAQ8;
4
+ AC Q9NP68; Q9NPJ2; Q9NZD0; Q9UBI2; Q9UQ61;
5
+ DT 13-AUG-1987 (Rel. 05, Created)
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+ DT 01-MAR-1989 (Rel. 10, Last sequence update)
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+ DT 13-SEP-2005 (Rel. 48, Last annotation update)
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+ DE Cellular tumor antigen p53 (Tumor suppressor p53) (Phosphoprotein p53)
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+ DE (Antigen NY-CO-13).
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+ GN Name=TP53; Synonyms=P53;
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+ OS Homo sapiens (Human).
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+ OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
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+ OC Mammalia; Eutheria; Euarchontoglires; Primates; Catarrhini; Hominidae;
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+ OC Homo.
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+ OX NCBI_TaxID=9606;
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+ RN [1]
17
+ RP NUCLEOTIDE SEQUENCE.
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+ RX MEDLINE=85230577; PubMed=4006916;
19
+ RA Zakut-Houri R., Bienz-Tadmor B., Givol D., Oren M.;
20
+ RT "Human p53 cellular tumor antigen: cDNA sequence and expression in COS
21
+ RT cells.";
22
+ RL EMBO J. 4:1251-1255(1985).
23
+ RN [2]
24
+ RP NUCLEOTIDE SEQUENCE.
25
+ RX MEDLINE=87064416; PubMed=2946935;
26
+ RA Lamb P., Crawford L.;
27
+ RT "Characterization of the human p53 gene.";
28
+ RL Mol. Cell. Biol. 6:1379-1385(1986).
29
+ RN [3]
30
+ RP NUCLEOTIDE SEQUENCE.
31
+ RX MEDLINE=85267676; PubMed=3894933;
32
+ RA Harlow E., Williamson N.M., Ralston R., Helfman D.M., Adams T.E.;
33
+ RT "Molecular cloning and in vitro expression of a cDNA clone for human
34
+ RT cellular tumor antigen p53.";
35
+ RL Mol. Cell. Biol. 5:1601-1610(1985).
36
+ RN [4]
37
+ RP NUCLEOTIDE SEQUENCE.
38
+ RX MEDLINE=87089826; PubMed=3025664;
39
+ RA Harris N., Brill E., Shohat O., Prokocimer M., Wolf D., Arai N.,
40
+ RA Rotter V.;
41
+ RT "Molecular basis for heterogeneity of the human p53 protein.";
42
+ RL Mol. Cell. Biol. 6:4650-4656(1986).
43
+ RN [5]
44
+ RP NUCLEOTIDE SEQUENCE.
45
+ RX MEDLINE=89108008; PubMed=2905688; DOI=10.1016/0378-1119(88)90196-5;
46
+ RA Buchman V.L., Chumakov P.M., Ninkina N.N., Samarina O.P.,
47
+ RA Georgiev G.P.;
48
+ RT "A variation in the structure of the protein-coding region of the
49
+ RT human p53 gene.";
50
+ RL Gene 70:245-252(1988).
51
+ RN [6]
52
+ RP NUCLEOTIDE SEQUENCE OF 101-393.
53
+ RX MEDLINE=85126934; PubMed=6396087;
54
+ RA Matlashewski G., Lamb P., Pim D., Peacock J., Crawford L.,
55
+ RA Benchimol S.;
56
+ RT "Isolation and characterization of a human p53 cDNA clone: expression
57
+ RT of the human p53 gene.";
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+ RL EMBO J. 3:3257-3262(1984).
59
+ RN [7]
60
+ RP NUCLEOTIDE SEQUENCE, VARIANTS BURKITT'S LYMPHOMA, AND VARIANT ARG-72.
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+ RX MEDLINE=92007731; PubMed=1915267;
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+ RA Farrell P.J., Allan G., Shanahan F., Vousden K.H., Crook T.;
63
+ RT "p53 is frequently mutated in Burkitt's lymphoma cell lines.";
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+ RL EMBO J. 10:2879-2887(1991).
65
+ RN [8]
66
+ RP NUCLEOTIDE SEQUENCE, AND VARIANTS ARG-72 AND LYS-286.
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+ RX MEDLINE=93303270; PubMed=8316628;
68
+ RA Allalunis-Turner M.J., Barron G.M., Day R.S. III, Dobler K.D.,
69
+ RA Mirzayans R.;
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+ RT "Isolation of two cell lines from a human malignant glioma specimen
71
+ RT differing in sensitivity to radiation and chemotherapeutic drugs.";
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+ RL Radiat. Res. 134:349-354(1993).
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+ RN [9]
74
+ RP NUCLEOTIDE SEQUENCE, AND VARIANT ARG-72.
75
+ RX MEDLINE=21264809; PubMed=11058590; DOI=10.1074/jbc.M007140200;
76
+ RA Chang N.-S., Pratt N., Heath J., Schultz L., Sleve D., Carey G.B.,
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+ RA Zevotek N.;
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+ RT "Hyaluronidase induction of a WW domain-containing oxidoreductase that
79
+ RT enhances tumor necrosis factor cytotoxicity.";
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+ RL J. Biol. Chem. 276:3361-3370(2001).
81
+ RN [10]
82
+ RP NUCLEOTIDE SEQUENCE.
83
+ RA Chumakov P.M., Almazov V.P., Jenkins J.R.;
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+ RL Submitted (JUN-1991) to the EMBL/GenBank/DDBJ databases.
85
+ RN [11]
86
+ RP NUCLEOTIDE SEQUENCE.
87
+ RA Rozemuller E.H., Tilanus M.G.J.;
88
+ RT "P53 genomic sequence. Corrections and polymorphism.";
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+ RL Submitted (MAR-1997) to the EMBL/GenBank/DDBJ databases.
90
+ RN [12]
91
+ RP NUCLEOTIDE SEQUENCE, AND VARIANTS SER-47; ARG-72; LYS-339 AND ALA-366.
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+ RA Livingston R.J., Rieder M.J., Chung M.-W., Ritchie T.K., Olson A.N.,
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+ RA Nguyen C.P., Gildersleeve H., Cassidy C.M., Johnson E.J.,
94
+ RA Swanson J.E., McFarland I., Yool B., Park C., Nickerson D.A.;
95
+ RT "NIEHS-SNPs, environmental genome project, NIEHS ES15478, Department
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+ RT of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu).";
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+ RL Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases.
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+ RN [13]
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+ RP NUCLEOTIDE SEQUENCE, AND VARIANTS ARG-72 AND LYS-286.
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+ RX PubMed=11023613;
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+ RA Anderson C.W., Allalunis-Turner M.J.;
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+ RT "Human TP53 from the malignant glioma-derived cell lines M059J and
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+ RT M059K has a cancer-associated mutation in exon 8.";
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+ RL Radiat. Res. 154:473-476(2000).
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+ RN [14]
106
+ RP NUCLEOTIDE SEQUENCE, AND VARIANTS ARG-72; HIS-273 AND SER-309.
107
+ RA Azuma K., Shichijo S., Itoh K.;
108
+ RT "Identification of a tumor-rejection antigen recognized by HLA-B46
109
+ RT restricted CTL.";
110
+ RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
111
+ RN [15]
112
+ RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND VARIANTS ARG-72 AND
113
+ RP ALA-278.
114
+ RC TISSUE=Kidney;
115
+ RX MEDLINE=22388257; PubMed=12477932; DOI=10.1073/pnas.242603899;
116
+ RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G.,
117
+ RA Klausner R.D., Collins F.S., Wagner L., Shenmen C.M., Schuler G.D.,
118
+ RA Altschul S.F., Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K.,
119
+ RA Hopkins R.F., Jordan H., Moore T., Max S.I., Wang J., Hsieh F.,
120
+ RA Diatchenko L., Marusina K., Farmer A.A., Rubin G.M., Hong L.,
121
+ RA Stapleton M., Soares M.B., Bonaldo M.F., Casavant T.L., Scheetz T.E.,
122
+ RA Brownstein M.J., Usdin T.B., Toshiyuki S., Carninci P., Prange C.,
123
+ RA Raha S.S., Loquellano N.A., Peters G.J., Abramson R.D., Mullahy S.J.,
124
+ RA Bosak S.A., McEwan P.J., McKernan K.J., Malek J.A., Gunaratne P.H.,
125
+ RA Richards S., Worley K.C., Hale S., Garcia A.M., Gay L.J., Hulyk S.W.,
126
+ RA Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., Gibbs R.A.,
127
+ RA Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A.,
128
+ RA Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
129
+ RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C.,
130
+ RA Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M.,
131
+ RA Butterfield Y.S.N., Krzywinski M.I., Skalska U., Smailus D.E.,
132
+ RA Schnerch A., Schein J.E., Jones S.J.M., Marra M.A.;
133
+ RT "Generation and initial analysis of more than 15,000 full-length human
134
+ RT and mouse cDNA sequences.";
135
+ RL Proc. Natl. Acad. Sci. U.S.A. 99:16899-16903(2002).
136
+ RN [16]
137
+ RP NUCLEOTIDE SEQUENCE OF 1-379, AND VARIANTS ARG-72 AND ASN-139.
138
+ RC TISSUE=Lung carcinoma;
139
+ RX PubMed=14660794; DOI=10.1073/pnas.2536558100;
140
+ RA Kanashiro C.A., Schally A.V., Groot K., Armatis P., Bernardino A.L.,
141
+ RA Varga J.L.;
142
+ RT "Inhibition of mutant p53 expression and growth of DMS-153 small cell
143
+ RT lung carcinoma by antagonists of growth hormone-releasing hormone and
144
+ RT bombesin.";
145
+ RL Proc. Natl. Acad. Sci. U.S.A. 100:15836-15841(2003).
146
+ RN [17]
147
+ RP NUCLEOTIDE SEQUENCE OF 126-185.
148
+ RA Pan X.L., Zhang A.H.;
149
+ RT "Study on the effect of tumor suppressor gene p53 in arsenism
150
+ RT patients.";
151
+ RL Submitted (SEP-2003) to the EMBL/GenBank/DDBJ databases.
152
+ RN [18]
153
+ RP NUCLEOTIDE SEQUENCE OF 261-298.
154
+ RC TISSUE=Blood;
155
+ RA Nimri L.F., Owais W., Momani E.;
156
+ RT "Detection of P53 gene mutations and serum p53 antibodies associated
157
+ RT with cigarette smoking.";
158
+ RL Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases.
159
+ RN [19]
160
+ RP NUCLEOTIDE SEQUENCE OF 262-306.
161
+ RC TISSUE=Ovarian adenocarcinoma;
162
+ RA Filippini G., Soldati G.;
163
+ RL Submitted (JUL-1996) to the EMBL/GenBank/DDBJ databases.
164
+ RN [20]
165
+ RP NUCLEOTIDE SEQUENCE OF 225-260.
166
+ RC TISSUE=Glial cell, and Glial tumor;
167
+ RA Thompson-Hehir J., Davies M.P.A., Green J.A., Halliwell N.,
168
+ RA Joyce K.A., Salisbury J., Sibson D.R., Vergote I., Walker C.;
169
+ RT "Mutation detection utilizing a novel PCR approach for amplification
170
+ RT of the p53 gene from microdissected tissue: application to archival
171
+ RT tumor samples.";
172
+ RL Submitted (DEC-1999) to the EMBL/GenBank/DDBJ databases.
173
+ RN [21]
174
+ RP NUCLEOTIDE SEQUENCE OF 225-260.
175
+ RA Yavuz A.S., Farner N.L., Yavuz S., Grammer A.C., Girschick H.J.,
176
+ RA Lipsky P.E.;
177
+ RT "Bcl6 and P53 gene mutations in tonsillar B cells.";
178
+ RL Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases.
179
+ RN [22]
180
+ RP NUCLEOTIDE SEQUENCE OF 332-366.
181
+ RA Pinto E.M., Mendonca B.B., Latronico A.C.;
182
+ RT "Allelic variant in intron 9 of TP53 gene.";
183
+ RL Submitted (APR-2003) to the EMBL/GenBank/DDBJ databases.
184
+ RN [23]
185
+ RP RNA-BINDING.
186
+ RX MEDLINE=91141509; PubMed=1705009;
187
+ RA Samad A., Carroll R.B.;
188
+ RT "The tumor suppressor p53 is bound to RNA by a stable covalent
189
+ RT linkage.";
190
+ RL Mol. Cell. Biol. 11:1598-1606(1991).
191
+ RN [24]
192
+ RP ALTERNATIVE SPLICING.
193
+ RX MEDLINE=96197761; PubMed=8632903;
194
+ RA Flaman J.-M., Waridel F., Estreicher A., Vannier A., Limacher J.-M.,
195
+ RA Gilbert D., Iggo R., Frebourg T.;
196
+ RT "The human tumour suppressor gene p53 is alternatively spliced in
197
+ RT normal cells.";
198
+ RL Oncogene 12:813-818(1996).
199
+ RN [25]
200
+ RP NUCLEAR LOCALIZATION SIGNAL.
201
+ RX MEDLINE=90191730; PubMed=2156209;
202
+ RA Addison C., Jenkins J.R., Sturzbecher H.-W.;
203
+ RT "The p53 nuclear localisation signal is structurally linked to a
204
+ RT p34cdc2 kinase motif.";
205
+ RL Oncogene 5:423-426(1990).
206
+ RN [26]
207
+ RP MINIMAL REPRESSION DOMAIN.
208
+ RX MEDLINE=21125692; PubMed=11007800; DOI=10.1074/jbc.M008231200;
209
+ RA Hong T.M., Chen J.J., Peck K., Yang P.C., Wu C.W.;
210
+ RT "p53 amino acids 339-346 represent the minimal p53 repression
211
+ RT domain.";
212
+ RL J. Biol. Chem. 276:1510-1515(2001).
213
+ RN [27]
214
+ RP INTERACTION WITH ING4.
215
+ RX MEDLINE=22635239; PubMed=12750254;
216
+ RA Shiseki M., Nagashima M., Pedeux R.M., Kitahama-Shiseki M., Miura K.,
217
+ RA Okamura S., Onogi H., Higashimoto Y., Appella E., Yokota J.,
218
+ RA Harris C.C.;
219
+ RT "p29ING4 and p28ING5 bind to p53 and p300, and enhance p53 activity.";
220
+ RL Cancer Res. 63:2373-2378(2003).
221
+ RN [28]
222
+ RP PHOSPHORYLATION BY P60/CDC2 AND CYCLIN B/CDC2.
223
+ RX MEDLINE=90280456; PubMed=2141171;
224
+ RA Bischoff J.R., Friedman P.N., Marshak D.R., Prives C., Beach D.;
225
+ RT "Human p53 is phosphorylated by p60-cdc2 and cyclin B-cdc2.";
226
+ RL Proc. Natl. Acad. Sci. U.S.A. 87:4766-4770(1990).
227
+ RN [29]
228
+ RP DEPHOSPHORYLATION BY PP2A.
229
+ RX MEDLINE=91172186; PubMed=1848668;
230
+ RA Scheidtmann K.H., Mumby M.C., Rundell K., Walter G.;
231
+ RT "Dephosphorylation of simian virus 40 large-T antigen and p53 protein
232
+ RT by protein phosphatase 2A: inhibition by small-t antigen.";
233
+ RL Mol. Cell. Biol. 11:1996-2003(1991).
234
+ RN [30]
235
+ RP O-GLYCOSYLATION.
236
+ RX MEDLINE=96197773; PubMed=8632915;
237
+ RA Shaw P., Freeman J., Bovey R., Iggo R.;
238
+ RT "Regulation of specific DNA binding by p53: evidence for a role for O-
239
+ RT glycosylation and charged residues at the carboxy-terminus.";
240
+ RL Oncogene 12:921-930(1996).
241
+ RN [31]
242
+ RP PHOSPHORYLATION BY PRPK.
243
+ RX MEDLINE=21570176; PubMed=11546806; DOI=10.1074/jbc.M105669200;
244
+ RA Abe Y., Matsumoto S., Wei S., Nezu K., Miyoshi A., Kito K., Ueda N.,
245
+ RA Shigemoto K., Hitsumoto Y., Nikawa J.-I., Enomoto Y.;
246
+ RT "Cloning and characterization of a p53-related protein kinase
247
+ RT expressed in interleukin-2-activated cytotoxic T-cells, epithelial
248
+ RT tumor cell lines, and the testes.";
249
+ RL J. Biol. Chem. 276:44003-44011(2001).
250
+ RN [32]
251
+ RP PHOSPHORYLATION SITE THR-18.
252
+ RX MEDLINE=20406546; PubMed=10951572; DOI=10.1038/sj.onc.1203709;
253
+ RA Lopez-Borges S., Lazo P.A.;
254
+ RT "The human vaccinia-related kinase 1 (VRK1) phosphorylates threonine-
255
+ RT 18 within the mdm-2 binding site of the p53 tumour suppressor
256
+ RT protein.";
257
+ RL Oncogene 19:3656-3664(2000).
258
+ RN [33]
259
+ RP IDENTIFICATION IN A COMPLEX WITH CABLES1 AND TP73.
260
+ RX MEDLINE=21659718; PubMed=11706030; DOI=10.1074/jbc.M108535200;
261
+ RA Tsuji K., Mizumoto K., Yamochi T., Nishimoto I., Matsuoka M.;
262
+ RT "Differential effect of ik3-1/cables on p53- and p73-induced cell
263
+ RT death.";
264
+ RL J. Biol. Chem. 277:2951-2957(2002).
265
+ RN [34]
266
+ RP PHOSPHORYLATION SITE THR-55, MUTAGENESIS OF THR-55, AND INTERACTION
267
+ RP WITH TAF1.
268
+ RX PubMed=15053879; DOI=10.1016/S1097-2765(04)00123-6;
269
+ RA Li H.-H., Li A.G., Sheppard H.M., Liu X.;
270
+ RT "Phosphorylation on Thr-55 by TAF1 mediates degradation of p53: a role
271
+ RT for TAF1 in cell G1 progression.";
272
+ RL Mol. Cell 13:867-878(2004).
273
+ RN [35]
274
+ RP ACETYLATION SITE LYS-305.
275
+ RX MEDLINE=22726738; PubMed=12724314; DOI=10.1074/jbc.M212574200;
276
+ RA Wang Y.H., Tsay Y.G., Tan B.C., Lo W.Y., Lee S.C.;
277
+ RT "Identification and characterization of a novel p300-mediated p53
278
+ RT acetylation site, lysine 305.";
279
+ RL J. Biol. Chem. 278:25568-25576(2003).
280
+ RN [36]
281
+ RP ACETYLATION SITES LYS-373 AND LYS-382.
282
+ RX MEDLINE=20123976; PubMed=10656795; DOI=10.1006/jmbi.1999.3415;
283
+ RA Abraham J., Kelly J., Thibault P., Benchimol S.;
284
+ RT "Post-translational modification of p53 protein in response to
285
+ RT ionizing radiation analyzed by mass spectrometry.";
286
+ RL J. Mol. Biol. 295:853-864(2000).
287
+ RN [37]
288
+ RP DEACETYLATION OF LYS-382 BY SIRT1.
289
+ RX MEDLINE=21526627; PubMed=11672523; DOI=10.1016/S0092-8674(01)00527-X;
290
+ RA Vaziri H., Dessain S.K., Ng Eaton E., Imai S.-I., Frye R.A.,
291
+ RA Pandita T.K., Guarente L., Weinberg R.A.;
292
+ RT "hSIR2(SIRT1) functions as an NAD-dependent p53 deacetylase.";
293
+ RL Cell 107:149-159(2001).
294
+ RN [38]
295
+ RP INTERACTION WITH HIPK2.
296
+ RX MEDLINE=22191252; PubMed=11925430; DOI=10.1074/jbc.M200153200;
297
+ RA Kim E.-J., Park J.-S., Um S.-J.;
298
+ RT "Identification and characterization of HIPK2 interacting with p73 and
299
+ RT modulating functions of the p53 family in vivo.";
300
+ RL J. Biol. Chem. 277:32020-32028(2002).
301
+ RN [39]
302
+ RP INTERACTION WITH HIPK2, PHOSPHORYLATION SITE SER-46, AND MUTAGENESIS
303
+ RP OF SER-46 AND LYS-382.
304
+ RX MEDLINE=21638685; PubMed=11740489; DOI=10.1038/ncb715;
305
+ RA Hofmann T.G., Moeller A., Sirma H., Zentgraf H., Taya Y., Droege W.,
306
+ RA Will H., Schmitz M.L.;
307
+ RT "Regulation of p53 activity by its interaction with homeodomain-
308
+ RT interacting protein kinase-2.";
309
+ RL Nat. Cell Biol. 4:1-10(2002).
310
+ RN [40]
311
+ RP INTERACTION WITH HIPK2, AND PHOSPHORYLATION SITE SER-46.
312
+ RX MEDLINE=21638694; PubMed=11780126; DOI=10.1038/ncb714;
313
+ RA D'Orazi G., Cecchinelli B., Bruno T., Manni I., Higashimoto Y.,
314
+ RA Saito S., Gostissa M., Coen S., Marchetti A., Del Sal G., Piaggio G.,
315
+ RA Fanciulli M., Appella E., Soddu S.;
316
+ RT "Homeodomain-interacting protein kinase-2 phosphorylates p53 at Ser 46
317
+ RT and mediates apoptosis.";
318
+ RL Nat. Cell Biol. 4:11-19(2002).
319
+ RN [41]
320
+ RP INTERACTION WITH P53DINP1.
321
+ RX MEDLINE=22863074; PubMed=12851404; DOI=10.1074/jbc.M301979200;
322
+ RA Tomasini R., Samir A.A., Carrier A., Isnardon D., Cecchinelli B.,
323
+ RA Soddu S., Malissen B., Dagorn J.-C., Iovanna J.L., Dusetti N.J.;
324
+ RT "TP53INP1s and homeodomain-interacting protein kinase-2 (HIPK2) are
325
+ RT partners in regulating p53 activity.";
326
+ RL J. Biol. Chem. 278:37722-37729(2003).
327
+ RN [42]
328
+ RP INTERACTION WITH HIPK1.
329
+ RX MEDLINE=22608637; PubMed=12702766; DOI=10.1073/pnas.0530308100;
330
+ RA Kondo S., Lu Y., Debbas M., Lin A.W., Sarosi I., Itie A., Wakeham A.,
331
+ RA Tuan J., Saris C., Elliott G., Ma W., Benchimol S., Lowe S.W.,
332
+ RA Mak T.W., Thukral S.K.;
333
+ RT "Characterization of cells and gene-targeted mice deficient for the
334
+ RT p53-binding kinase homeodomain-interacting protein kinase 1 (HIPK1).";
335
+ RL Proc. Natl. Acad. Sci. U.S.A. 100:5431-5436(2003).
336
+ RN [43]
337
+ RP INTERACTIONS WITH HRMT1L2; EP300 AND CARM1, AND FUNCTION.
338
+ RX PubMed=15186775; DOI=10.1016/j.cell.2004.05.009;
339
+ RA An W., Kim J., Roeder R.G.;
340
+ RT "Ordered cooperative functions of PRMT1, p300, and CARM1 in
341
+ RT transcriptional activation by p53.";
342
+ RL Cell 117:735-748(2004).
343
+ RN [44]
344
+ RP NUCLEOCYTOPLASMIC SHUTTLING, AND NUCLEAR EXPORT SIGNAL.
345
+ RX MEDLINE=22825602; PubMed=12944468;
346
+ RX DOI=10.1128/MCB.23.18.6396-6405.2003;
347
+ RA O'Keefe K., Li H., Zhang Y.;
348
+ RT "Nucleocytoplasmic shuttling of p53 is essential for MDM2-mediated
349
+ RT cytoplasmic degradation but not ubiquitination.";
350
+ RL Mol. Cell. Biol. 23:6396-6405(2003).
351
+ RN [45]
352
+ RP REVIEW ON ZINC-BINDING PROPERTIES.
353
+ RX MEDLINE=21438235; PubMed=11554448; DOI=10.1089/15230860152542961;
354
+ RA Hainaut P., Mann K.;
355
+ RT "Zinc binding and redox control of p53 structure and function.";
356
+ RL Antioxid. Redox Signal. 3:611-623(2001).
357
+ RN [46]
358
+ RP STRUCTURE BY NMR OF 319-360.
359
+ RX MEDLINE=94294808; PubMed=8023159;
360
+ RA Clore G.M., Omichinski J.G., Sakaguchi K., Zambrano N., Sakamoto H.,
361
+ RA Appella E., Gronenborn A.M.;
362
+ RT "High-resolution structure of the oligomerization domain of p53 by
363
+ RT multidimensional NMR.";
364
+ RL Science 265:386-391(1994).
365
+ RN [47]
366
+ RP STRUCTURE BY NMR OF 325-355.
367
+ RX MEDLINE=95292092; PubMed=7773777;
368
+ RA Lee W., Harvey T.S., Yin Y., Yau P., Litchfield D., Arrowsmith C.H.;
369
+ RT "Solution structure of the tetrameric minimum transforming domain of
370
+ RT p53.";
371
+ RL Nat. Struct. Biol. 1:877-890(1994).
372
+ RN [48]
373
+ RP STRUCTURE BY NMR OF 326-354.
374
+ RX MEDLINE=98026899; PubMed=9321402; DOI=10.1093/emboj/16.20.6230;
375
+ RA McCoy M., Stavridi E.S., Waterman J.L., Wieczorek A.M., Opella S.J.,
376
+ RA Halazonetis T.D.;
377
+ RT "Hydrophobic side-chain size is a determinant of the three-dimensional
378
+ RT structure of the p53 oligomerization domain.";
379
+ RL EMBO J. 16:6230-6236(1997).
380
+ RN [49]
381
+ RP X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS) OF 94-289.
382
+ RX MEDLINE=94294806; PubMed=8023157;
383
+ RA Cho Y., Gorina S., Jeffrey P.D., Pavletich N.P.;
384
+ RT "Crystal structure of a p53 tumor suppressor-DNA complex:
385
+ RT understanding tumorigenic mutations.";
386
+ RL Science 265:346-355(1994).
387
+ RN [50]
388
+ RP X-RAY CRYSTALLOGRAPHY (1.7 ANGSTROMS) OF 325-356.
389
+ RX MEDLINE=95184011; PubMed=7878469;
390
+ RA Jeffrey P.D., Gorina S., Pavletich N.P.;
391
+ RT "Crystal structure of the tetramerization domain of the p53 tumor
392
+ RT suppressor at 1.7 angstroms.";
393
+ RL Science 267:1498-1502(1995).
394
+ RN [51]
395
+ RP X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) OF 13-29 IN COMPLEX WITH MDM2.
396
+ RX MEDLINE=97081050; PubMed=8875929; DOI=10.1126/science.274.5289.948;
397
+ RA Kussie P.H., Gorina S., Marechal V., Elenbaas B., Moreau J.,
398
+ RA Levine A.J., Pavletich N.P.;
399
+ RT "Structure of the MDM2 oncoprotein bound to the p53 tumor suppressor
400
+ RT transactivation domain.";
401
+ RL Science 274:948-953(1996).
402
+ RN [52]
403
+ RP X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS) OF 97-287 IN COMPLEX WITH 53BP2.
404
+ RX MEDLINE=97035414; PubMed=8875926; DOI=10.1126/science.274.5289.1001;
405
+ RA Gorina S., Pavletich N.P.;
406
+ RT "Structure of the p53 tumor suppressor bound to the ankyrin and SH3
407
+ RT domains of 53BP2.";
408
+ RL Science 274:1001-1005(1996).
409
+ RN [53]
410
+ RP REVIEW.
411
+ RX MEDLINE=94090335; PubMed=8266092;
412
+ RA Harris C.C.;
413
+ RT "p53: at the crossroads of molecular carcinogenesis and risk
414
+ RT assessment.";
415
+ RL Science 262:1980-1981(1993).
416
+ RN [54]
417
+ RP REVIEW ON VARIANTS.
418
+ RX MEDLINE=91289156; PubMed=1905840;
419
+ RA Hoolstein M., Sidransky D., Vogelstein B., Harris C.C.;
420
+ RT "p53 mutations in human cancers.";
421
+ RL Science 253:49-53(1991).
422
+ RN [55]
423
+ RP REVIEW ON VARIANTS.
424
+ RX MEDLINE=96271983; PubMed=8829653;
425
+ RX DOI=10.1002/(SICI)1098-1004(1996)7:3<202::AID-HUMU4>3.3.CO;2-5;
426
+ RA de Vries E.M.G., Ricke D.O., de Vries T.N., Hartmann A., Blaszyk H.,
427
+ RA Liao D., Soussi T., Kovach J.S., Sommer S.S.;
428
+ RT "Database of mutations in the p53 and APC tumor suppressor genes
429
+ RT designed to facilitate molecular epidemiological analyses.";
430
+ RL Hum. Mutat. 7:202-213(1996).
431
+ RN [56]
432
+ RP VARIANT ARG-72.
433
+ RX MEDLINE=91153807; PubMed=1999338; DOI=10.1007/BF00201836;
434
+ RA Olschwang S., Laurent-Puig P., Vassal A., Salmon R.-J., Thomas G.;
435
+ RT "Characterization of a frequent polymorphism in the coding sequence of
436
+ RT the Tp53 gene in colonic cancer patients and a control population.";
437
+ RL Hum. Genet. 86:369-370(1991).
438
+ RN [57]
439
+ RP VARIANT LFS THR-133.
440
+ RX MEDLINE=92034774; PubMed=1933902;
441
+ RA Law J.C., Strong L.C., Chidambaram A., Ferrell R.E.;
442
+ RT "A germ line mutation in exon 5 of the p53 gene in an extended cancer
443
+ RT family.";
444
+ RL Cancer Res. 51:6385-6387(1991).
445
+ RN [58]
446
+ RP VARIANTS LFS CYS-245; TRP-248; PRO-252 AND LYS-258.
447
+ RX MEDLINE=91057657; PubMed=1978757;
448
+ RA Malkin D., Li F.P., Strong L.C., Fraumeni J.F. Jr., Nelson C.E.,
449
+ RA Kim D.H., Kassel J., Gryka M.A., Bischoff F.Z., Tainsky M.A.,
450
+ RA Friend S.H.;
451
+ RT "Germ line p53 mutations in a familial syndrome of breast cancer,
452
+ RT sarcomas, and other neoplasms.";
453
+ RL Science 250:1233-1238(1990).
454
+ RN [59]
455
+ RP VARIANT LFS ASP-245.
456
+ RX MEDLINE=91080929; PubMed=2259385; DOI=10.1038/348747a0;
457
+ RA Srivastava S., Zou Z., Pirollo K., Blattner W., Chang E.H.;
458
+ RT "Germ-line transmission of a mutated p53 gene in a cancer-prone family
459
+ RT with Li-Fraumeni syndrome.";
460
+ RL Nature 348:747-749(1990).
461
+ RN [60]
462
+ RP VARIANT LFS LEU-272.
463
+ RX MEDLINE=92147883; PubMed=1737852;
464
+ RA Felix C.A., Nau M.M., Takahashi T., Mitsudomi T., Chiba I.,
465
+ RA Poplack D.G., Reaman G.H., Cole D.E., Letterio J.J., Whang-Peng J.,
466
+ RA Knutsen T., Minna J.D.;
467
+ RT "Hereditary and acquired p53 gene mutations in childhood acute
468
+ RT lymphoblastic leukemia.";
469
+ RL J. Clin. Invest. 89:640-647(1992).
470
+ RN [61]
471
+ RP VARIANTS LFS HIS-273 AND VAL-325.
472
+ RX MEDLINE=92228023; PubMed=1565144;
473
+ RA Malkin D., Jolly K.W., Barbier N., Look A.T., Friend S.H.,
474
+ RA Gebhardt M.C., Andersen T.I., Boerresen A.-L., Li F.P., Garber J.,
475
+ RA Strong L.C.;
476
+ RT "Germline mutations of the p53 tumor-suppressor gene in children and
477
+ RT young adults with second malignant neoplasms.";
478
+ RL N. Engl. J. Med. 326:1309-1315(1992).
479
+ RN [62]
480
+ RP VARIANTS BREAST TUMORS GLN-132; SER-249; LYS-280 AND LYS-285.
481
+ RX MEDLINE=90295284; PubMed=1694291;
482
+ RA Bartek J., Iggo R., Gannon J., Lane D.P.;
483
+ RT "Genetic and immunochemical analysis of mutant p53 in human breast
484
+ RT cancer cell lines.";
485
+ RL Oncogene 5:893-899(1990).
486
+ RN [63]
487
+ RP VARIANTS COLON TUMORS PHE-241 AND HIS-273.
488
+ RX MEDLINE=91017544; PubMed=1699228;
489
+ RA Rodrigues N.R., Rowan A., Smith M.E.F., Kerr I.B., Bodmer W.F.,
490
+ RA Gannon J.V., Lane D.P.;
491
+ RT "p53 mutations in colorectal cancer.";
492
+ RL Proc. Natl. Acad. Sci. U.S.A. 87:7555-7559(1990).
493
+ RN [64]
494
+ RP VARIANTS ESOPHAGUS TUMOR VAL-154; VAL-245; GLN-248; LEU-278 AND
495
+ RP SER-278.
496
+ RX MEDLINE=91088630; PubMed=2263646;
497
+ RA Hollstein M.C., Metcalf R.A., Welsh J.A., Montesano R., Harris C.C.;
498
+ RT "Frequent mutation of the p53 gene in human esophageal cancer.";
499
+ RL Proc. Natl. Acad. Sci. U.S.A. 87:9958-9961(1990).
500
+ RN [65]
501
+ RP VARIANTS COLORECTAL CANCER MUTATIONS.
502
+ RX MEDLINE=91282784; PubMed=1647768;
503
+ RA Ishioka C., Sato T., Gamoh M., Suzuki T., Shibata H., Kanamaru R.,
504
+ RA Wakui A., Yamazaki T.;
505
+ RT "Mutations of the P53 gene, including an intronic point mutation, in
506
+ RT colorectal tumors.";
507
+ RL Biochem. Biophys. Res. Commun. 177:901-906(1991).
508
+ RN [66]
509
+ RP VARIANTS ESOPHAGUS TUMORS LEU-152; ALA-155; HIS-175; PHE-176 AND
510
+ RP HIS-273.
511
+ RX MEDLINE=91330175; PubMed=1868473;
512
+ RA Casson A.G., Mukhopadhyay T., Cleary K.R., Ro J.Y., Levin B.,
513
+ RA Roth J.A.;
514
+ RT "p53 gene mutations in Barrett's epithelium and esophageal cancer.";
515
+ RL Cancer Res. 51:4495-4499(1991).
516
+ RN [67]
517
+ RP VARIANTS HEPATOCELLULAR CARCINOMAS MUTATIONS IN CHINA.
518
+ RX MEDLINE=91187113; PubMed=1849234; DOI=10.1038/350427a0;
519
+ RA Hsu I.C., Metcalf R.A., Sun T., Welsh J.A., Wang N.J., Harris C.C.;
520
+ RT "Mutational hotspot in the p53 gene in human hepatocellular
521
+ RT carcinomas.";
522
+ RL Nature 350:427-428(1991).
523
+ RN [68]
524
+ RP VARIANTS HEPATOCELLULAR CARCINOMAS MUTATIONS IN SOUTH AFRICA.
525
+ RX MEDLINE=91187114; PubMed=1672732; DOI=10.1038/350429a0;
526
+ RA Bressac B., Kew M., Wands J., Ozturk M.;
527
+ RT "Selective G to T mutations of p53 gene in hepatocellular carcinoma
528
+ RT from southern Africa.";
529
+ RL Nature 350:429-431(1991).
530
+ RN [69]
531
+ RP VARIANTS HNSCC PHE-176; PHE-242; CYS-245; LEU-248 AND HIS-273.
532
+ RX MEDLINE=93007999; PubMed=1394225;
533
+ RA Somers K.D., Merrick M.A., Lopez M.E., Incognito L.S., Schechter G.L.,
534
+ RA Casey G.;
535
+ RT "Frequent p53 mutations in head and neck cancer.";
536
+ RL Cancer Res. 52:5997-6000(1992).
537
+ RN [70]
538
+ RP VARIANTS ANOGENITAL CARCINOMAS.
539
+ RX MEDLINE=93010989; PubMed=1327751;
540
+ RA Crook T., Vousden K.H.;
541
+ RT "Properties of p53 mutations detected in primary and secondary
542
+ RT cervical cancers suggest mechanisms of metastasis and involvement of
543
+ RT environmental carcinogens.";
544
+ RL EMBO J. 11:3935-3940(1992).
545
+ RN [71]
546
+ RP VARIANTS ORAL SQUAMOUS CELL CARCINOMA CYS-205; GLU-281 AND LYS-285.
547
+ RX MEDLINE=93093790; PubMed=1459726;
548
+ RA Sakai E., Rikimaru K., Ueda M., Matsumoto Y., Ishii N., Enomoto S.,
549
+ RA Yamamoto H., Tsuchida N.;
550
+ RT "The p53 tumor-suppressor gene and ras oncogene mutations in oral
551
+ RT squamous-cell carcinoma.";
552
+ RL Int. J. Cancer 52:867-872(1992).
553
+ RN [72]
554
+ RP VARIANT PRO-HIS-PRO-178 INS.
555
+ RX MEDLINE=93265016; PubMed=1303181;
556
+ RA Bhatia K., Guiterrez M.I., Magrath I.T.;
557
+ RT "A novel mutation in the p53 gene in a Burkitt's lymphoma cell line.";
558
+ RL Hum. Mol. Genet. 1:207-208(1992).
559
+ RN [73]
560
+ RP VARIANTS BURKITT'S LYMPHOMAS.
561
+ RX MEDLINE=93064692; PubMed=1437144;
562
+ RA Duthu A., Debuire B., Romano J.W., Ehrhart J.C., Fiscella M., May E.,
563
+ RA Appella E., May P.;
564
+ RT "p53 mutations in Raji cells: characterization and localization
565
+ RT relative to other Burkitt's lymphomas.";
566
+ RL Oncogene 7:2161-2167(1992).
567
+ RN [74]
568
+ RP VARIANT NASOPHARYNGEAL CARCINOMA THR-280.
569
+ RX MEDLINE=92335329; PubMed=1631151;
570
+ RA Sun Y., Hegamyer G., Heng Y.-J., Hildesheim A., Chen J.-Y., Cao Y.,
571
+ RA Yao K.-T., Colburn N.H.;
572
+ RT "An infrequent point mutation of the p53 gene in human nasopharyngeal
573
+ RT carcinoma.";
574
+ RL Proc. Natl. Acad. Sci. U.S.A. 89:6516-6520(1992).
575
+ RN [75]
576
+ RP VARIANTS HNSCC.
577
+ RX MEDLINE=93235942; PubMed=7682763;
578
+ RA Caamano J., Zhang S.Y., Rosvold E.A., Bauer B., Klein-Szanto A.J.P.;
579
+ RT "p53 alterations in human squamous cell carcinomas and carcinoma cell
580
+ RT lines.";
581
+ RL Am. J. Pathol. 142:1131-1139(1993).
582
+ RN [76]
583
+ RP VARIANTS HNSCC.
584
+ RX MEDLINE=94006220; PubMed=8402617;
585
+ RA Boyle J.O., Hakim J., Koch W., van der Riet P., Hruban R.H., Roa R.A.,
586
+ RA Correo R., Eby Y.J., Ruppert J.M., Sidransky D.;
587
+ RT "The incidence of p53 mutations increases with progression of head and
588
+ RT neck cancer.";
589
+ RL Cancer Res. 53:4477-4480(1993).
590
+ RN [77]
591
+ RP VARIANTS COLON TUMORS.
592
+ RX MEDLINE=93330562; PubMed=8336944;
593
+ RA Hamelin R., Jego N., Laurent-Puig P., Vidaud M., Thomas G.;
594
+ RT "Efficient screening of p53 mutations by denaturing gradient gel
595
+ RT electrophoresis in colorectal tumors.";
596
+ RL Oncogene 8:2213-2220(1993).
597
+ RN [78]
598
+ RP CHARACTERIZATION OF VARIANT ALA-143.
599
+ RX MEDLINE=94283378; PubMed=8013454;
600
+ RA Zhang W., Guo X.-Y., Hu G.-Y., Liu W.-B., Shay J.W., Deisseroth A.B.;
601
+ RT "A temperature-sensitive mutant of human p53.";
602
+ RL EMBO J. 13:2535-2544(1994).
603
+ RN [79]
604
+ RP VARIANTS LFS HIS-175; ARG-193; GLN-248; CYS-273 AND TYR-275.
605
+ RX MEDLINE=95193787; PubMed=7887414;
606
+ RA Frebourg T., Barbier N., Yan Y.-X., Garber J.E., Dreyfus M.,
607
+ RA Fraumeni J.F. Jr., Li F.P., Friend S.H.;
608
+ RT "Germ-line p53 mutations in 15 families with Li-Fraumeni syndrome.";
609
+ RL Am. J. Hum. Genet. 56:608-615(1995).
610
+ RN [80]
611
+ RP VARIANT LFS HIS-175.
612
+ RX MEDLINE=96423319; PubMed=8825920;
613
+ RA Varley J.M., McGrown G., Thorncroft M., Tricker K.J., Teare M.D.,
614
+ RA Santibanez-Koref M.F., Houlston R.S., Martin J., Birch J.M.,
615
+ RA Evans D.G.R.;
616
+ RT "An extended Li-Fraumeni kindred with gastric carcinoma and a codon
617
+ RT 175 mutation in TP53.";
618
+ RL J. Med. Genet. 32:942-945(1995).
619
+ RN [81]
620
+ RP VARIANTS ESOPHAGEAL ADENOCARCINOMA PHE-176; SER-245; TRP-248; TRP-282
621
+ RP AND GLN-286.
622
+ RX MEDLINE=96233927; PubMed=8829627;
623
+ RX DOI=10.1002/(SICI)1098-1004(1996)7:2<109::AID-HUMU4>3.3.CO;2-0;
624
+ RA Audrezet M.-P., Robaszkiewicz M., Mercier B., Nousbaum J.-B.,
625
+ RA Hardy E., Bail J.-P., Volant A., Lozac'H P., Gouerou H., Ferec C.;
626
+ RT "Molecular analysis of the TP53 gene in Barrett's adenocarcinoma.";
627
+ RL Hum. Mutat. 7:109-113(1996).
628
+ RN [82]
629
+ RP VARIANTS COLORECTAL TUMORS.
630
+ RX MEDLINE=97255965; PubMed=9101296;
631
+ RX DOI=10.1002/(SICI)1098-1004(1997)9:4<348::AID-HUMU8>3.3.CO;2-7;
632
+ RA Guldberg P., Nedergaard T., Nielsen H.J., Olsen A.C., Ahrenkiel V.,
633
+ RA Zeuthen J.;
634
+ RT "Single-step DGGE-based mutation scanning of the p53 gene: application
635
+ RT to genetic diagnosis of colorectal cancer.";
636
+ RL Hum. Mutat. 9:348-355(1997).
637
+ RN [83]
638
+ RP VARIANT COLORECTAL CARCINOMA ILE-157.
639
+ RX MEDLINE=98080146; PubMed=9419979; DOI=10.1038/sj.onc.1201668;
640
+ RA Miyaki M., Nishio J., Konishi M., Kikuchi-Yanoshita R., Tanaka K.,
641
+ RA Muraoka M., Nagato M., Chong J.-M., Koike M., Terada T., Kawahara Y.,
642
+ RA Fukutome A., Tomiyama J., Chuganji Y., Momoi M., Utsunomiya J.;
643
+ RT "Drastic genetic instability of tumors and normal tissues in Turcot
644
+ RT syndrome.";
645
+ RL Oncogene 15:2877-2881(1997).
646
+ RN [84]
647
+ RP VARIANTS SER-152; ILE-169; PHE-176; THR-195; CYS-220; ILE-230; CYS-273
648
+ RP AND SER-278.
649
+ RX MEDLINE=98111377; PubMed=9450901;
650
+ RX DOI=10.1002/(SICI)1098-1004(1998)11:1<39::AID-HUMU6>3.0.CO;2-G;
651
+ RA van Rensburg E.J., Engelbrecht S., van Heerden W.F.P., Kotze M.J.,
652
+ RA Raubenheimer E.J.;
653
+ RT "Detection of p53 gene mutations in oral squamous cell carcinomas of a
654
+ RT black African population sample.";
655
+ RL Hum. Mutat. 11:39-44(1998).
656
+ RN [85]
657
+ RP VARIANT NONCLASSICAL LFS CYS-337.
658
+ RX MEDLINE=98112421; PubMed=9452042;
659
+ RA Luca J.W., Strong L.C., Hansen M.F.;
660
+ RT "A germline missense mutation R337C in exon 10 of the human p53
661
+ RT gene.";
662
+ RL Hum. Mutat. Suppl. 1:S58-S61(1998).
663
+ RN [86]
664
+ RP VARIANT LFS ILE-292.
665
+ RX MEDLINE=99414637; PubMed=10484981; DOI=10.1016/S0165-4608(98)00276-3;
666
+ RA Gueran S., Tunca Y., Imirzalioglu N.;
667
+ RT "Hereditary TP53 codon 292 and somatic P16INK4A codon 94 mutations in
668
+ RT a Li-Fraumeni syndrome family.";
669
+ RL Cancer Genet. Cytogenet. 113:145-151(1999).
670
+ RN [87]
671
+ RP INVOLVEMENT IN CHOROID PLEXUS PAPILLOMA.
672
+ RX MEDLINE=22079076; PubMed=12085209; DOI=10.1038/sj/bjc/6600269;
673
+ RA Rutherford J., Chu C.E., Duddy P.M., Charlton R.S., Chumas P.,
674
+ RA Taylor G.R., Lu X., Barnes D.M., Camplejohn R.S.;
675
+ RT "Investigations on a clinically and functionally unusual and novel
676
+ RT germline p53 mutation.";
677
+ RL Br. J. Cancer 86:1592-1596(2002).
678
+ CC -!- FUNCTION: Acts as a tumor suppressor in many tumor types; induces
679
+ CC growth arrest or apoptosis depending on the physiological
680
+ CC circumstances and cell type. Involved in cell cycle regulation as
681
+ CC a trans-activator that acts to negatively regulate cell division
682
+ CC by controlling a set of genes required for this process. One of
683
+ CC the activated genes is an inhibitor of cyclin-dependent kinases.
684
+ CC Apoptosis induction seems to be mediated either by stimulation of
685
+ CC BAX and FAS antigen expression, or by repression of Bcl-2
686
+ CC expression.
687
+ CC -!- COFACTOR: Binds 1 zinc ion per subunit.
688
+ CC -!- SUBUNIT: Interacts with AXIN1. Probably part of a complex
689
+ CC consisiting of TP53, HIPK2 and AXIN1 (By similarity). Binds DNA as
690
+ CC a homotetramer. Interacts with histone acetyltransferases EP300
691
+ CC and methyltransferases HRMT1L2 and CARM1, and recruits them to
692
+ CC promoters. In vitro, the interaction of TP53 with cancer-
693
+ CC associated/HPV (E6) viral proteins leads to ubiquitination and
694
+ CC degradation of TP53 giving a possible model for cell growth
695
+ CC regulation. This complex formation requires an additional factor,
696
+ CC E6-AP, which stably associates with TP53 in the presence of E6. C-
697
+ CC terminus interacts with TAF1, when TAF1 is part of the TFIID
698
+ CC complex. Interacts with ING4 and this interaction may be indirect.
699
+ CC Found in a complex with CABLES1 and TP73. Interacts with HIPK1,
700
+ CC HIPK2, and P53DINP1.
701
+ CC -!- INTERACTION:
702
+ CC Q8TDN4:CABLES1; NbExp=1; IntAct=EBI-366083, EBI-604615;
703
+ CC Q9ESJ1:Cables1 (xeno); NbExp=1; IntAct=EBI-366083, EBI-604411;
704
+ CC Q92793:CREBBP; NbExp=3; IntAct=EBI-366083, EBI-81215;
705
+ CC P42858:HD; NbExp=2; IntAct=EBI-366083, EBI-466029;
706
+ CC P09429:HMGB1; NbExp=1; IntAct=EBI-366083, EBI-389432;
707
+ CC P56273:MDM2 (xeno); NbExp=1; IntAct=EBI-366083, EBI-541233;
708
+ CC Q00987:MDM2; NbExp=1; IntAct=EBI-366083, EBI-389668;
709
+ CC P06748:NPM1; NbExp=3; IntAct=EBI-366083, EBI-78579;
710
+ CC P06748-1:NPM1; NbExp=1; IntAct=EBI-366083, EBI-354150;
711
+ CC Q06609:RAD51; NbExp=1; IntAct=EBI-366083, EBI-297202;
712
+ CC Q96ST3:SIN3A; NbExp=2; IntAct=EBI-366083, EBI-347218;
713
+ CC P20226:TBP; NbExp=1; IntAct=EBI-366083, EBI-355371;
714
+ CC Q7Z6Z7:UREB1; NbExp=2; IntAct=EBI-366083, EBI-625934;
715
+ CC -!- SUBCELLULAR LOCATION: Cytoplasmic and nuclear.
716
+ CC -!- ALTERNATIVE PRODUCTS:
717
+ CC Event=Alternative splicing; Named isoforms=2;
718
+ CC Name=1;
719
+ CC IsoId=P04637-1; Sequence=Displayed;
720
+ CC Name=2; Synonyms=I9RET;
721
+ CC IsoId=P04637-2; Sequence=VSP_006535, VSP_006536;
722
+ CC Note=Seems to be non-functional. Expressed in quiescent
723
+ CC lymphocytes;
724
+ CC -!- DOMAIN: The nuclear export signal acts as a transcriptional
725
+ CC repression domain.
726
+ CC -!- PTM: Acetylated. Acetylation of Lys-382 by CREBBP enhances
727
+ CC transcriptional activity. Deacetylation of Lys-382 by SIRT1
728
+ CC impairs its ability to induce proapoptotic program and modulate
729
+ CC cell senescence.
730
+ CC -!- PTM: Phosphorylated. Phosphorylation on Ser residues mediates
731
+ CC transcriptional activation. Phosphorylated by HIPK1 (By
732
+ CC similarity). Phosphorylated on Thr-18 by VRK1, which may prevent
733
+ CC the interaction with MDM2. Phosphorylated on Thr-55 by TAF1, which
734
+ CC promotes MDM2-mediated degradation. Phosphorylated on Ser-46 by
735
+ CC HIPK2 upon UV irradiation. Phosphorylation on Ser-46 is required
736
+ CC for acetylation by CREBBP.
737
+ CC -!- PTM: Dephosphorylated by PP2A. SV40 small T antigen inhibits the
738
+ CC dephosphorylation by the AC form of PP2A.
739
+ CC -!- PTM: May be O-glycosylated in the C-terminal basic region. Studied
740
+ CC in EB-1 cell line.
741
+ CC -!- DISEASE: TP53 is found in increased amounts in a wide variety of
742
+ CC transformed cells. TP53 is frequently mutated or inactivated in
743
+ CC about 60% of cancers.
744
+ CC -!- DISEASE: Defects in TP53 are involved in esophageal squamous cell
745
+ CC carcinoma (ESCC) [MIM:133239]. ESCC is a tumor of the esophagus.
746
+ CC -!- DISEASE: Defects in TP53 are a cause of Li-Fraumeni syndrome (LFS)
747
+ CC [MIM:151623]. LFS is an autosomal dominant familial cancer
748
+ CC syndrome that in its classic form is defined by the existence of
749
+ CC both a proband with a sarcoma and two other first-degree relatives
750
+ CC with a cancer by age 45 years. In these families the affected
751
+ CC relatives develop a diverse set of malignancies at unusually early
752
+ CC ages. The spectrum of cancers in LFS includes breast carcinomas,
753
+ CC soft-tissue sarcomas, brain tumors, osteosarcoma, leukemia and
754
+ CC adreno-cortical carcinoma. Other possible component tumors of LFS
755
+ CC are melanoma, gonadal cell tumors and carcinomas of the lung,
756
+ CC pancreas and prostate.
757
+ CC -!- DISEASE: Defects in TP53 are found in Barrett metaplasia; also
758
+ CC known as Barrett esophagus. It is a condition in which the
759
+ CC normally stratified squamous epithelium of the lower esophagus is
760
+ CC replaced by a metaplastic columnar epithelium. The condition
761
+ CC develops as a complication in approximately 10% of patients with
762
+ CC chronic gastroesophageal reflux disease and predisposes to the
763
+ CC development of esophageal adenocarcinoma.
764
+ CC -!- DISEASE: Defects in TP53 are involved in head and neck squamous
765
+ CC cell carcinomas (HNSCC) [MIM:275355].
766
+ CC -!- DISEASE: Defects in TP53 are involved in oral squamous cell
767
+ CC carcinoma (OSCC). Cigarette smoke is a prime mutagenic agent in
768
+ CC cancer of the aerodigestive tract.
769
+ CC -!- DISEASE: Defects in TP53 are a cause of lung cancer [MIM:211980].
770
+ CC -!- DISEASE: Defects in TP53 are a cause of choroid plexus papilloma
771
+ CC [MIM:260500]. Choroid plexus papilloma is a slow-growing benign
772
+ CC tumor of the choroid plexus that often invades the leptomeninges.
773
+ CC In children it is usually in a lateral ventricle but in adults it
774
+ CC is more often in the fourth ventricle. Hydrocephalus is common,
775
+ CC either from obstruction or from tumor secretion of cerebrospinal
776
+ CC fluid. If it undergoes malignant transformation it is called a
777
+ CC choroid plexus carcinoma. Primary choroid plexus tumors are rare
778
+ CC and usually occur in early childhood.
779
+ CC -!- SIMILARITY: Belongs to the p53 family.
780
+ CC -!- DATABASE: NAME=IARC TP53 mutation database;
781
+ CC NOTE=IARC db of somatic p53 mutations;
782
+ CC WWW="http://www.iarc.fr/p53/".
783
+ CC -!- DATABASE: NAME=Tokyo p53;
784
+ CC NOTE=University of Tokyo db of p53 mutations;
785
+ CC WWW="http://p53.genome.ad.jp/".
786
+ CC -!- DATABASE: NAME=p53 web site at the Institut Curie;
787
+ CC WWW="http://p53.curie.fr/".
788
+ CC -!- DATABASE: NAME=Atlas Genet. Cytogenet. Oncol. Haematol.;
789
+ CC WWW="http://www.infobiogen.fr/services/chromcancer/Genes/P53ID88.html".
790
+ CC --------------------------------------------------------------------------
791
+ CC This Swiss-Prot entry is copyright. It is produced through a collaboration
792
+ CC between the Swiss Institute of Bioinformatics and the EMBL outstation -
793
+ CC the European Bioinformatics Institute. There are no restrictions on its
794
+ CC use as long as its content is in no way modified and this statement is not
795
+ CC removed.
796
+ CC --------------------------------------------------------------------------
797
+ DR EMBL; X02469; CAA26306.1; -; mRNA.
798
+ DR EMBL; M13121; AAA59987.1; -; Genomic_DNA.
799
+ DR EMBL; M13112; AAA59987.1; JOINED; Genomic_DNA.
800
+ DR EMBL; M13113; AAA59987.1; JOINED; Genomic_DNA.
801
+ DR EMBL; M13114; AAA59987.1; JOINED; Genomic_DNA.
802
+ DR EMBL; M13115; AAA59987.1; JOINED; Genomic_DNA.
803
+ DR EMBL; M13116; AAA59987.1; JOINED; Genomic_DNA.
804
+ DR EMBL; M13117; AAA59987.1; JOINED; Genomic_DNA.
805
+ DR EMBL; M13118; AAA59987.1; JOINED; Genomic_DNA.
806
+ DR EMBL; M13119; AAA59987.1; JOINED; Genomic_DNA.
807
+ DR EMBL; M13120; AAA59987.1; JOINED; Genomic_DNA.
808
+ DR EMBL; K03199; AAA59989.1; -; mRNA.
809
+ DR EMBL; M14694; AAA61211.1; -; mRNA.
810
+ DR EMBL; M14695; AAA61212.1; -; mRNA.
811
+ DR EMBL; M22898; AAA59988.1; -; Genomic_DNA.
812
+ DR EMBL; M22882; AAA59988.1; JOINED; Genomic_DNA.
813
+ DR EMBL; M22883; AAA59988.1; JOINED; Genomic_DNA.
814
+ DR EMBL; M22884; AAA59988.1; JOINED; Genomic_DNA.
815
+ DR EMBL; M22887; AAA59988.1; JOINED; Genomic_DNA.
816
+ DR EMBL; M22888; AAA59988.1; JOINED; Genomic_DNA.
817
+ DR EMBL; M22894; AAA59988.1; JOINED; Genomic_DNA.
818
+ DR EMBL; M22895; AAA59988.1; JOINED; Genomic_DNA.
819
+ DR EMBL; M22896; AAA59988.1; JOINED; Genomic_DNA.
820
+ DR EMBL; M22897; AAA59988.1; JOINED; Genomic_DNA.
821
+ DR EMBL; X01405; CAA25652.1; -; mRNA.
822
+ DR EMBL; X60011; CAA42626.1; -; mRNA.
823
+ DR EMBL; X60012; CAA42627.1; ALT_TERM; mRNA.
824
+ DR EMBL; X60013; CAA42628.1; -; mRNA.
825
+ DR EMBL; X60014; CAA42629.1; -; mRNA.
826
+ DR EMBL; X60015; CAA42630.1; -; mRNA.
827
+ DR EMBL; X60016; CAA42631.1; -; mRNA.
828
+ DR EMBL; X60017; CAA42632.1; -; mRNA.
829
+ DR EMBL; X60018; CAA42633.1; -; mRNA.
830
+ DR EMBL; X60019; CAA42634.1; -; mRNA.
831
+ DR EMBL; X60020; CAA42635.1; -; mRNA.
832
+ DR EMBL; AF135121; AAD28535.1; -; Genomic_DNA.
833
+ DR EMBL; AF135120; AAD28535.1; JOINED; Genomic_DNA.
834
+ DR EMBL; AF307851; AAG28785.1; -; mRNA.
835
+ DR EMBL; X54156; CAA38095.1; -; Genomic_DNA.
836
+ DR EMBL; U94788; AAC12971.1; -; Genomic_DNA.
837
+ DR EMBL; AF136271; AAD28628.1; -; Genomic_DNA.
838
+ DR EMBL; AF136270; AAD28628.1; JOINED; Genomic_DNA.
839
+ DR EMBL; AB082923; BAC16799.1; -; mRNA.
840
+ DR EMBL; AY838896; AAV80424.1; -; Genomic_DNA.
841
+ DR EMBL; BC003596; AAH03596.1; -; mRNA.
842
+ DR EMBL; AY429684; AAR10356.1; -; mRNA.
843
+ DR EMBL; AY390341; AAQ90158.1; -; Genomic_DNA.
844
+ DR EMBL; AY359814; AAR13239.1; -; Genomic_DNA.
845
+ DR EMBL; U63714; AAB39322.1; -; Genomic_DNA.
846
+ DR EMBL; AF209136; AAF36362.1; -; Genomic_DNA.
847
+ DR EMBL; AF209128; AAF36354.1; -; Genomic_DNA.
848
+ DR EMBL; AF209129; AAF36355.1; -; Genomic_DNA.
849
+ DR EMBL; AF209130; AAF36356.1; -; Genomic_DNA.
850
+ DR EMBL; AF209131; AAF36357.1; -; Genomic_DNA.
851
+ DR EMBL; AF209132; AAF36358.1; -; Genomic_DNA.
852
+ DR EMBL; AF209133; AAF36359.1; -; Genomic_DNA.
853
+ DR EMBL; AF209134; AAF36360.1; -; Genomic_DNA.
854
+ DR EMBL; AF209135; AAF36361.1; -; Genomic_DNA.
855
+ DR EMBL; AF209148; AAF36374.1; -; Genomic_DNA.
856
+ DR EMBL; AF209149; AAF36375.1; -; Genomic_DNA.
857
+ DR EMBL; AF209150; AAF36376.1; -; Genomic_DNA.
858
+ DR EMBL; AF209151; AAF36377.1; -; Genomic_DNA.
859
+ DR EMBL; AF209152; AAF36378.1; -; Genomic_DNA.
860
+ DR EMBL; AF209153; AAF36379.1; -; Genomic_DNA.
861
+ DR EMBL; AF209154; AAF36380.1; -; Genomic_DNA.
862
+ DR EMBL; AF209155; AAF36381.1; -; Genomic_DNA.
863
+ DR EMBL; AF209156; AAF36382.1; -; Genomic_DNA.
864
+ DR EMBL; AF210309; AAF63442.1; -; Genomic_DNA.
865
+ DR EMBL; AF210308; AAF63442.1; JOINED; Genomic_DNA.
866
+ DR EMBL; AF210310; AAF63443.1; -; Genomic_DNA.
867
+ DR EMBL; AF240684; AAK76358.1; -; Genomic_DNA.
868
+ DR EMBL; AF240685; AAK76359.1; -; Genomic_DNA.
869
+ DR EMBL; AY270155; AAP30003.1; -; Genomic_DNA.
870
+ DR PIR; A25224; DNHU53.
871
+ DR PDB; 1A1U; NMR; A/C=324-358.
872
+ DR PDB; 1AIE; X-ray; @=326-356.
873
+ DR PDB; 1C26; X-ray; A=325-356.
874
+ DR PDB; 1DT7; NMR; X/Y=367-388.
875
+ DR PDB; 1GZH; X-ray; A/C=-.
876
+ DR PDB; 1H26; X-ray; E=376-386.
877
+ DR PDB; 1HS5; NMR; A/B=324-357.
878
+ DR PDB; 1KZY; X-ray; A/B=95-289.
879
+ DR PDB; 1OLG; NMR; A/B/C/D=319-360.
880
+ DR PDB; 1OLH; NMR; A/B/C/D=319-360.
881
+ DR PDB; 1PES; NMR; A/B/C/D=325-355.
882
+ DR PDB; 1PET; NMR; A/B/C/D=325-355.
883
+ DR PDB; 1SAE; NMR; A/B/C/D=319-360.
884
+ DR PDB; 1SAF; NMR; A/B/C/D=319-360.
885
+ DR PDB; 1SAG; NMR; A/B/C/D=319-360.
886
+ DR PDB; 1SAH; NMR; A/B/C/D=319-360.
887
+ DR PDB; 1SAI; NMR; A/B/C/D=319-360.
888
+ DR PDB; 1SAJ; NMR; A/B/C/D=319-360.
889
+ DR PDB; 1SAK; NMR; A/B/C/D=319-360.
890
+ DR PDB; 1SAL; NMR; A/B/C/D=319-360.
891
+ DR PDB; 1TSR; X-ray; A/B/C=94-312.
892
+ DR PDB; 1TUP; X-ray; A/B/C=94-312.
893
+ DR PDB; 1UOL; X-ray; A/B=94-312.
894
+ DR PDB; 1YCQ; X-ray; B=13-29.
895
+ DR PDB; 1YCR; X-ray; B=15-29.
896
+ DR PDB; 1YCS; X-ray; A=94-292.
897
+ DR PDB; 2BIM; X-ray; A/B=94-312.
898
+ DR PDB; 2BIN; X-ray; A=94-312.
899
+ DR PDB; 2BIO; X-ray; A=94-312.
900
+ DR PDB; 2BIP; X-ray; A=94-312.
901
+ DR PDB; 2BIQ; X-ray; A=94-312.
902
+ DR PDB; 3SAK; NMR; A/B/C/D=319-360.
903
+ DR IntAct; P04637; -.
904
+ DR TRANSFAC; T00671; -.
905
+ DR SWISS-2DPAGE; P04637; HUMAN.
906
+ DR Ensembl; ENSG00000141510; Homo sapiens.
907
+ DR HGNC; HGNC:11998; TP53.
908
+ DR H-InvDB; HIX0013510; -.
909
+ DR Reactome; P04637; -.
910
+ DR MIM; 191170; -.
911
+ DR MIM; 133239; -.
912
+ DR MIM; 151623; -.
913
+ DR MIM; 275355; -.
914
+ DR MIM; 211980; -.
915
+ DR MIM; 260500; -.
916
+ DR GO; GO:0005739; C:mitochondrion; IDA.
917
+ DR GO; GO:0005730; C:nucleolus; IDA.
918
+ DR GO; GO:0005524; F:ATP binding; IDA.
919
+ DR GO; GO:0005507; F:copper ion binding; IDA.
920
+ DR GO; GO:0000739; F:DNA strand annealing activity; IDA.
921
+ DR GO; GO:0004518; F:nuclease activity; TAS.
922
+ DR GO; GO:0005515; F:protein binding; IPI.
923
+ DR GO; GO:0046982; F:protein heterodimerization activity; IPI.
924
+ DR GO; GO:0003700; F:transcription factor activity; IDA.
925
+ DR GO; GO:0008270; F:zinc ion binding; TAS.
926
+ DR GO; GO:0006915; P:apoptosis; IDA.
927
+ DR GO; GO:0006284; P:base-excision repair; TAS.
928
+ DR GO; GO:0008635; P:caspase activation via cytochrome c; IDA.
929
+ DR GO; GO:0007569; P:cell aging; IMP.
930
+ DR GO; GO:0007050; P:cell cycle arrest; TAS.
931
+ DR GO; GO:0000075; P:cell cycle checkpoint; TAS.
932
+ DR GO; GO:0030154; P:cell differentiation; TAS.
933
+ DR GO; GO:0008283; P:cell proliferation; TAS.
934
+ DR GO; GO:0008630; P:DNA damage response, signal transduction re...; TAS.
935
+ DR GO; GO:0006310; P:DNA recombination; TAS.
936
+ DR GO; GO:0008628; P:induction of apoptosis by hormones; TAS.
937
+ DR GO; GO:0030308; P:negative regulation of cell growth; IMP.
938
+ DR GO; GO:0051097; P:negative regulation of helicase activity; TAS.
939
+ DR GO; GO:0006289; P:nucleotide-excision repair; IMP.
940
+ DR GO; GO:0051262; P:protein tetramerization; TAS.
941
+ DR GO; GO:0046902; P:regulation of mitochondrial membrane permea...; TAS.
942
+ DR GO; GO:0006355; P:regulation of transcription, DNA-dependent; IDA.
943
+ DR InterPro; IPR002117; P53.
944
+ DR InterPro; IPR011615; P53_DNA_bd.
945
+ DR InterPro; IPR012346; P53_RUNT_DNA_bd.
946
+ DR InterPro; IPR010991; p53_tetrameristn.
947
+ DR Pfam; PF00870; P53; 1.
948
+ DR Pfam; PF07710; P53_tetramer; 1.
949
+ DR PRINTS; PR00386; P53SUPPRESSR.
950
+ DR ProDom; PD002681; P53; 1.
951
+ DR PROSITE; PS00348; P53; 1.
952
+ KW 3D-structure; Acetylation; Activator; Alternative splicing;
953
+ KW Anti-oncogene; Apoptosis; Cell cycle; Disease mutation; DNA-binding;
954
+ KW Glycoprotein; Li-Fraumeni syndrome; Metal-binding; Nuclear protein;
955
+ KW Phosphorylation; Polymorphism; Transcription;
956
+ KW Transcription regulation; Zinc.
957
+ FT DNA_BIND 102 292
958
+ FT REGION 1 83 Interaction with HRMT1L2.
959
+ FT REGION 1 44 Transcription activation (acidic).
960
+ FT REGION 100 370 Interaction with HIPK1 (By similarity).
961
+ FT REGION 116 292 Interaction with AXIN1 (By similarity).
962
+ FT REGION 241 248 Interacts with the 53BP2 SH3 domain.
963
+ FT REGION 300 393 Interaction with CARM1.
964
+ FT REGION 319 360 Interaction with HIPK2.
965
+ FT REGION 325 356 Oligomerization.
966
+ FT REGION 368 387 Basic (repression of DNA-binding).
967
+ FT MOTIF 305 321 Bipartite nuclear localization signal.
968
+ FT MOTIF 339 350 Nuclear export signal.
969
+ FT METAL 176 176 Zinc.
970
+ FT METAL 179 179 Zinc.
971
+ FT METAL 238 238 Zinc.
972
+ FT METAL 242 242 Zinc.
973
+ FT BINDING 392 392 5'-phospho-RNA (covalent).
974
+ FT MOD_RES 15 15 Phosphoserine (by PRPK).
975
+ FT MOD_RES 18 18 Phosphothreonine (by VRK1).
976
+ FT MOD_RES 46 46 Phosphoserine (by HIPK2).
977
+ FT MOD_RES 55 55 Phosphothreonine (by TAF1).
978
+ FT MOD_RES 305 305 N6-acetyllysine.
979
+ FT MOD_RES 315 315 Phosphoserine (by CDC2).
980
+ FT MOD_RES 373 373 N6-acetyllysine.
981
+ FT MOD_RES 382 382 N6-acetyllysine.
982
+ FT VARSPLIC 332 341 IRGRERFEMF -> DGTSFQKENC (in isoform 2).
983
+ FT /FTId=VSP_006535.
984
+ FT VARSPLIC 342 393 Missing (in isoform 2).
985
+ FT /FTId=VSP_006536.
986
+ FT VARIANT 7 7 D -> H (in a skin tumor).
987
+ FT /FTId=VAR_005851.
988
+ FT VARIANT 35 35 L -> F (in a liver tumor).
989
+ FT /FTId=VAR_005852.
990
+ FT VARIANT 43 43 L -> S (in a renal tumor).
991
+ FT /FTId=VAR_005853.
992
+ FT VARIANT 47 47 P -> S (in dbSNP:1800371).
993
+ FT /FTId=VAR_014632.
994
+ FT VARIANT 53 53 W -> C (in a leukemia and a lymphoma).
995
+ FT /FTId=VAR_005854.
996
+ FT VARIANT 60 60 P -> S (in a leukemia and a lymphoma).
997
+ FT /FTId=VAR_005855.
998
+ FT VARIANT 72 72 P -> R (in dbSNP:1042522).
999
+ FT /FTId=VAR_005856.
1000
+ FT VARIANT 79 79 A -> T (in clone P53-H-1).
1001
+ FT /FTId=VAR_005857.
1002
+ FT VARIANT 87 87 P -> Q (in a brain tumor).
1003
+ FT /FTId=VAR_005858.
1004
+ FT VARIANT 94 94 S -> T (in a colon tumor).
1005
+ FT /FTId=VAR_005859.
1006
+ FT VARIANT 110 110 R -> C (in a liver and an uterus tumor).
1007
+ FT /FTId=VAR_005860.
1008
+ FT VARIANT 110 110 R -> L (in a liver tumor).
1009
+ FT /FTId=VAR_005861.
1010
+ FT VARIANT 110 110 R -> P (in a breast tumor).
1011
+ FT /FTId=VAR_005862.
1012
+ FT VARIANT 113 113 F -> C (in a lung tumor).
1013
+ FT /FTId=VAR_005863.
1014
+ FT VARIANT 125 125 T -> M (in a lung tumor).
1015
+ FT /FTId=VAR_005864.
1016
+ FT VARIANT 126 126 Y -> D (in a colorectal tumor).
1017
+ FT /FTId=VAR_005865.
1018
+ FT VARIANT 126 126 Y -> N (in a leukemia and a lymphoma).
1019
+ FT /FTId=VAR_005866.
1020
+ FT VARIANT 127 127 S -> F (in a lung tumor).
1021
+ FT /FTId=VAR_005867.
1022
+ FT VARIANT 128 128 P -> S (in a breast tumor).
1023
+ FT /FTId=VAR_005868.
1024
+ FT VARIANT 129 129 A -> D (in a sarcoma).
1025
+ FT /FTId=VAR_005869.
1026
+ FT VARIANT 130 130 L -> R (in a liver tumor).
1027
+ FT /FTId=VAR_005870.
1028
+ FT VARIANT 131 131 N -> K (in a colon tumor).
1029
+ FT /FTId=VAR_005872.
1030
+ FT VARIANT 131 131 N -> S (in a liver tumor).
1031
+ FT /FTId=VAR_005871.
1032
+ FT VARIANT 132 132 K -> M (in a sarcoma).
1033
+ FT /FTId=VAR_005873.
1034
+ FT VARIANT 132 132 K -> Q (in a breast tumor).
1035
+ FT /FTId=VAR_005874.
1036
+ FT VARIANT 133 133 M -> T (in LFS).
1037
+ FT /FTId=VAR_005875.
1038
+ FT VARIANT 135 135 C -> F (in a colon tumor).
1039
+ FT /FTId=VAR_005877.
1040
+ FT VARIANT 135 135 C -> S (in a colon tumor).
1041
+ FT /FTId=VAR_005876.
1042
+ FT VARIANT 136 136 Q -> E (in a breast tumor).
1043
+ FT /FTId=VAR_005878.
1044
+ FT VARIANT 136 136 Q -> K (in a colon tumor).
1045
+ FT /FTId=VAR_005879.
1046
+ FT VARIANT 137 137 L -> Q (in a liver tumor).
1047
+ FT /FTId=VAR_005880.
1048
+ FT VARIANT 138 138 A -> P (in a lung tumor).
1049
+ FT /FTId=VAR_005881.
1050
+ FT VARIANT 139 139 K -> N (in a breast, an ovary tumor, a
1051
+ FT leukemia and a lymphoma).
1052
+ FT /FTId=VAR_005882.
1053
+ FT VARIANT 140 140 T -> Y (in a leukemia and a lymphoma).
1054
+ FT /FTId=VAR_005883.
1055
+ FT VARIANT 141 141 C -> F (in a breast tumor).
1056
+ FT /FTId=VAR_005885.
1057
+ FT VARIANT 141 141 C -> G (in an ovary tumor).
1058
+ FT /FTId=VAR_005884.
1059
+ FT VARIANT 141 141 C -> Y (in many types of tumors).
1060
+ FT /FTId=VAR_005886.
1061
+ FT VARIANT 143 143 V -> A (in a colon tumor; strong DNA
1062
+ FT binding ability at 32.5 degrees Celsius;
1063
+ FT strong reduction of transcriptional
1064
+ FT activity at 37.5 degrees Celsius).
1065
+ FT /FTId=VAR_005887.
1066
+ FT VARIANT 144 144 Q -> P (in a leukemia and a lymphoma).
1067
+ FT /FTId=VAR_005888.
1068
+ FT VARIANT 145 145 L -> P (in a brain tumor).
1069
+ FT /FTId=VAR_005889.
1070
+ FT VARIANT 145 145 L -> Q (in an esophagus tumor).
1071
+ FT /FTId=VAR_005890.
1072
+ FT VARIANT 147 147 V -> D (in an ovary tumor).
1073
+ FT /FTId=VAR_005891.
1074
+ FT VARIANT 147 147 V -> G (in a prostate tumor).
1075
+ FT /FTId=VAR_005892.
1076
+ FT VARIANT 149 149 S -> P (in a breast tumor).
1077
+ FT /FTId=VAR_005893.
1078
+ FT VARIANT 151 151 P -> A (in a brain and a colon tumor).
1079
+ FT /FTId=VAR_005894.
1080
+ FT VARIANT 151 151 P -> S (in many types of tumors).
1081
+ FT /FTId=VAR_005895.
1082
+ FT VARIANT 151 151 P -> T (in a breast tumor).
1083
+ FT /FTId=VAR_005896.
1084
+ FT VARIANT 152 152 P -> L (in an esophagus tumor).
1085
+ FT /FTId=VAR_005897.
1086
+ FT VARIANT 152 152 P -> S (in oral squamous cell carcinoma).
1087
+ FT /FTId=VAR_005898.
1088
+ FT VARIANT 153 153 P -> T (in a colon tumor).
1089
+ FT /FTId=VAR_005899.
1090
+ FT VARIANT 154 154 G -> V (in esophagus tumor).
1091
+ FT /FTId=VAR_005900.
1092
+ FT VARIANT 155 155 T -> A (in an esophagus tumor).
1093
+ FT /FTId=VAR_005901.
1094
+ FT VARIANT 156 156 R -> P (in an osteosarcoma cell line).
1095
+ FT /FTId=VAR_005902.
1096
+ FT VARIANT 157 157 V -> D (in a liver tumor).
1097
+ FT /FTId=VAR_005903.
1098
+ FT VARIANT 157 157 V -> I (in colorectal carcinoma; from a
1099
+ FT patient with Turcot syndrome).
1100
+ FT /FTId=VAR_012977.
1101
+ FT VARIANT 157 157 V -> S (in a S. African hepatocellular
1102
+ FT carcinoma).
1103
+ FT /FTId=VAR_005904.
1104
+ FT VARIANT 158 158 R -> C (in a noninvasive head and neck
1105
+ FT tumor).
1106
+ FT /FTId=VAR_005905.
1107
+ FT VARIANT 158 158 R -> G (in a brain and a lung tumor).
1108
+ FT /FTId=VAR_005906.
1109
+ FT VARIANT 158 158 R -> H (in many types of tumors).
1110
+ FT /FTId=VAR_005907.
1111
+ FT VARIANT 160 160 M -> I (in a lung and a skin tumor).
1112
+ FT /FTId=VAR_005908.
1113
+ FT VARIANT 161 161 A -> S (in a brain tumor).
1114
+ FT /FTId=VAR_005909.
1115
+ FT VARIANT 162 162 I -> S (in a brain tumor).
1116
+ FT /FTId=VAR_005910.
1117
+ FT VARIANT 162 162 I -> V (in an ovary tumor).
1118
+ FT /FTId=VAR_005911.
1119
+ FT VARIANT 163 163 Y -> H (in HNSCC).
1120
+ FT /FTId=VAR_005912.
1121
+ FT VARIANT 164 164 K -> N (in a lung tumor).
1122
+ FT /FTId=VAR_005913.
1123
+ FT VARIANT 164 164 K -> Q (in a breast tumor).
1124
+ FT /FTId=VAR_005914.
1125
+ FT VARIANT 165 165 Q -> L (in a breast tumor).
1126
+ FT /FTId=VAR_005915.
1127
+ FT VARIANT 165 165 Q -> R (in an ovary tumor).
1128
+ FT /FTId=VAR_005916.
1129
+ FT VARIANT 166 166 S -> L (in a lung tumor).
1130
+ FT /FTId=VAR_005917.
1131
+ FT VARIANT 168 168 H -> R (in a brain tumor).
1132
+ FT /FTId=VAR_005918.
1133
+ FT VARIANT 169 169 M -> I (in oral squamous cell carcinoma).
1134
+ FT /FTId=VAR_005919.
1135
+ FT VARIANT 169 169 M -> T (in a noninvasive head and neck
1136
+ FT tumor).
1137
+ FT /FTId=VAR_005920.
1138
+ FT VARIANT 170 170 T -> M (in a colon tumor).
1139
+ FT /FTId=VAR_005921.
1140
+ FT VARIANT 170 170 T -> S (in a colon tumor).
1141
+ FT /FTId=VAR_005922.
1142
+ FT VARIANT 172 172 V -> A (in a prostate tumor).
1143
+ FT /FTId=VAR_005923.
1144
+ FT VARIANT 173 173 V -> E (in a colon tumor).
1145
+ FT /FTId=VAR_005924.
1146
+ FT VARIANT 173 173 V -> L (in a cervical carcinoma).
1147
+ FT /FTId=VAR_005925.
1148
+ FT VARIANT 173 173 V -> M (in a colon tumor).
1149
+ FT /FTId=VAR_005926.
1150
+ FT VARIANT 174 174 R -> H (in the cell line Detroit 562 of
1151
+ FT squamous cell carcinoma).
1152
+ FT /FTId=VAR_005927.
1153
+ FT VARIANT 175 175 R -> C (in a colon and an uterus tumor).
1154
+ FT /FTId=VAR_005928.
1155
+ FT VARIANT 175 175 R -> G (in a brain tumor).
1156
+ FT /FTId=VAR_005929.
1157
+ FT VARIANT 175 175 R -> H (in LFS and colon/esophagus/
1158
+ FT gastric tumors).
1159
+ FT /FTId=VAR_005932.
1160
+ FT VARIANT 175 175 R -> L (in a breast and a colon tumor).
1161
+ FT /FTId=VAR_005930.
1162
+ FT VARIANT 175 175 R -> P (in a cervical carcinoma).
1163
+ FT /FTId=VAR_005931.
1164
+ FT VARIANT 176 176 C -> F (in esophagus tumors and many
1165
+ FT types of tumors).
1166
+ FT /FTId=VAR_005933.
1167
+ FT VARIANT 176 176 C -> W (in a lung tumor).
1168
+ FT /FTId=VAR_005934.
1169
+ FT VARIANT 177 177 P -> L (in a skin tumor).
1170
+ FT /FTId=VAR_005935.
1171
+ FT VARIANT 178 178 H -> HPHP (in a Burkitt's lymphoma).
1172
+ FT /FTId=VAR_005936.
1173
+ FT VARIANT 181 181 R -> L (in a cervical carcinoma).
1174
+ FT /FTId=VAR_005937.
1175
+ FT VARIANT 182 182 C -> S (in a stomach tumor).
1176
+ FT /FTId=VAR_005938.
1177
+ FT VARIANT 184 184 D -> Y (in a leukemia and a lymphoma).
1178
+ FT /FTId=VAR_005939.
1179
+ FT VARIANT 186 186 D -> Y (in a breast tumor).
1180
+ FT /FTId=VAR_005940.
1181
+ FT VARIANT 187 187 G -> C (in a breast tumor).
1182
+ FT /FTId=VAR_005941.
1183
+ FT VARIANT 187 187 G -> S (in a leukemia and a lymphoma).
1184
+ FT /FTId=VAR_005942.
1185
+ FT VARIANT 189 189 A -> P (in an ovary tumor).
1186
+ FT /FTId=VAR_005943.
1187
+ FT VARIANT 190 190 P -> L (in a colorectal tumor).
1188
+ FT /FTId=VAR_005944.
1189
+ FT VARIANT 191 191 P -> T (in a colon tumor).
1190
+ FT /FTId=VAR_005945.
1191
+ FT VARIANT 192 192 Q -> R (in a colon tumor).
1192
+ FT /FTId=VAR_005946.
1193
+ FT VARIANT 193 193 H -> D (in an uterus tumor).
1194
+ FT /FTId=VAR_005947.
1195
+ FT VARIANT 193 193 H -> R (in LFS).
1196
+ FT /FTId=VAR_005948.
1197
+ FT VARIANT 194 194 L -> P (in a colon tumor).
1198
+ FT /FTId=VAR_005949.
1199
+ FT VARIANT 194 194 L -> R (in the cell line HU 281 of
1200
+ FT squamous cell carcinoma).
1201
+ FT /FTId=VAR_005950.
1202
+ FT VARIANT 195 195 I -> T (in oral squamous cell carcinoma).
1203
+ FT /FTId=VAR_005951.
1204
+ FT VARIANT 198 198 E -> K (in HNSCC).
1205
+ FT /FTId=VAR_005952.
1206
+ FT VARIANT 205 205 Y -> C (in oral squamous cell carcinoma).
1207
+ FT /FTId=VAR_005953.
1208
+ FT VARIANT 205 205 Y -> D (in HNSCC).
1209
+ FT /FTId=VAR_005954.
1210
+ FT VARIANT 213 213 R -> Q (in a Burkitt's lymphoma and a
1211
+ FT colorectal tumor).
1212
+ FT /FTId=VAR_005955.
1213
+ FT VARIANT 216 216 V -> M (in HNSCC).
1214
+ FT /FTId=VAR_005956.
1215
+ FT VARIANT 220 220 Y -> C (in oral squamous cell carcinoma).
1216
+ FT /FTId=VAR_005957.
1217
+ FT VARIANT 220 220 Y -> H (in a colon tumor).
1218
+ FT /FTId=VAR_005958.
1219
+ FT VARIANT 220 220 Y -> S (in HNSCC).
1220
+ FT /FTId=VAR_005959.
1221
+ FT VARIANT 228 228 D -> E (in HNSCC).
1222
+ FT /FTId=VAR_005960.
1223
+ FT VARIANT 230 230 T -> I (in oral squamous cell carcinoma).
1224
+ FT /FTId=VAR_005961.
1225
+ FT VARIANT 232 232 I -> T (in an anal tumor).
1226
+ FT /FTId=VAR_005962.
1227
+ FT VARIANT 234 234 Y -> C (in HNSCC).
1228
+ FT /FTId=VAR_005963.
1229
+ FT VARIANT 234 234 Y -> H (in a Burkitt's lymphoma).
1230
+ FT /FTId=VAR_005964.
1231
+ FT VARIANT 237 237 M -> I (in a colon tumor).
1232
+ FT /FTId=VAR_005965.
1233
+ FT VARIANT 238 238 C -> F (in an anal tumor).
1234
+ FT /FTId=VAR_005966.
1235
+ FT VARIANT 238 238 C -> Y (in a colorectal tumor).
1236
+ FT /FTId=VAR_005967.
1237
+ FT VARIANT 240 240 S -> I (in an anal tumor).
1238
+ FT /FTId=VAR_005968.
1239
+ FT VARIANT 241 241 S -> F (in a colon tumor).
1240
+ FT /FTId=VAR_005969.
1241
+ FT VARIANT 242 242 C -> F (in a skin tumor).
1242
+ FT /FTId=VAR_005970.
1243
+ FT VARIANT 245 245 G -> A (in a renal tumor).
1244
+ FT /FTId=VAR_005971.
1245
+ FT VARIANT 245 245 G -> C (in LFS, colon and larynx tumors).
1246
+ FT /FTId=VAR_005972.
1247
+ FT VARIANT 245 245 G -> D (in LFS and a colon tumor).
1248
+ FT /FTId=VAR_005973.
1249
+ FT VARIANT 245 245 G -> S (in esophageal adenocarcinoma and
1250
+ FT many types of tumors).
1251
+ FT /FTId=VAR_005974.
1252
+ FT VARIANT 245 245 G -> V (in HNSCC).
1253
+ FT /FTId=VAR_005975.
1254
+ FT VARIANT 246 246 M -> R (in a liver tumor).
1255
+ FT /FTId=VAR_005976.
1256
+ FT VARIANT 246 246 M -> T (in a leukemia and a lymphoma).
1257
+ FT /FTId=VAR_005977.
1258
+ FT VARIANT 246 246 M -> V (in many types of tumors).
1259
+ FT /FTId=VAR_005978.
1260
+ FT VARIANT 247 247 N -> I (in a lung tumor).
1261
+ FT /FTId=VAR_005980.
1262
+ FT VARIANT 247 247 N -> W (in a skin tumor).
1263
+ FT /FTId=VAR_005979.
1264
+ FT VARIANT 248 248 R -> G (in an endocrine tumor).
1265
+ FT /FTId=VAR_005981.
1266
+ FT VARIANT 248 248 R -> L (in tumors of hypopharynx, larynx
1267
+ FT and tonsil).
1268
+ FT /FTId=VAR_005982.
1269
+ FT VARIANT 248 248 R -> Q (in LFS and many types of tumors).
1270
+ FT /FTId=VAR_005983.
1271
+ FT VARIANT 248 248 R -> W (in LFS, esophageal adenocarcinoma
1272
+ FT and many types of tumors).
1273
+ FT /FTId=VAR_005984.
1274
+ FT VARIANT 249 249 R -> G (in a breast tumor).
1275
+ FT /FTId=VAR_005985.
1276
+ FT VARIANT 249 249 R -> S (in many types of tumors).
1277
+ FT /FTId=VAR_005986.
1278
+ FT VARIANT 251 251 I -> N (in HNSCC).
1279
+ FT /FTId=VAR_005987.
1280
+ FT VARIANT 252 252 L -> P (in LFS and many types of tumors).
1281
+ FT /FTId=VAR_005988.
1282
+ FT VARIANT 254 254 I -> N (in a breast tumor).
1283
+ FT /FTId=VAR_017908.
1284
+ FT VARIANT 254 254 I -> T (in a colon tumor).
1285
+ FT /FTId=VAR_017909.
1286
+ FT VARIANT 257 257 L -> P (in HNSCC).
1287
+ FT /FTId=VAR_005989.
1288
+ FT VARIANT 258 258 E -> D (in a colorectal tumor).
1289
+ FT /FTId=VAR_005990.
1290
+ FT VARIANT 258 258 E -> K (in LFS).
1291
+ FT /FTId=VAR_005991.
1292
+ FT VARIANT 272 272 V -> L (in LFS).
1293
+ FT /FTId=VAR_005992.
1294
+ FT VARIANT 273 273 R -> C (in LFS, colorectal tumor and oral
1295
+ FT squamous cell carcinoma).
1296
+ FT /FTId=VAR_005993.
1297
+ FT VARIANT 273 273 R -> G (in HNSCC).
1298
+ FT /FTId=VAR_005994.
1299
+ FT VARIANT 273 273 R -> H (in LFS, colon and esophagus
1300
+ FT tumors).
1301
+ FT /FTId=VAR_005995.
1302
+ FT VARIANT 274 274 V -> F (in a colorectal tumor).
1303
+ FT /FTId=VAR_005997.
1304
+ FT VARIANT 275 275 C -> W (in a breast and a stomach tumor).
1305
+ FT /FTId=VAR_005999.
1306
+ FT VARIANT 275 275 C -> Y (in LFS and tumors of brain, lung,
1307
+ FT kidney, stomach).
1308
+ FT /FTId=VAR_005998.
1309
+ FT VARIANT 277 277 C -> G (in a lung tumor).
1310
+ FT /FTId=VAR_006000.
1311
+ FT VARIANT 278 278 P -> A (in a breast tumor).
1312
+ FT /FTId=VAR_006001.
1313
+ FT VARIANT 278 278 P -> H (in a leukemia and a lymphoma).
1314
+ FT /FTId=VAR_006002.
1315
+ FT VARIANT 278 278 P -> L (in an esophagus and a lung
1316
+ FT tumor).
1317
+ FT /FTId=VAR_006003.
1318
+ FT VARIANT 278 278 P -> S (in oral squamous cell carcinoma).
1319
+ FT /FTId=VAR_006004.
1320
+ FT VARIANT 278 278 P -> T (in HNSCC; same patient as
1321
+ FT mutation His-281).
1322
+ FT /FTId=VAR_006005.
1323
+ FT VARIANT 279 279 G -> E (in a colorectal tumor).
1324
+ FT /FTId=VAR_006006.
1325
+ FT VARIANT 280 280 R -> I (in a colorectal tumor).
1326
+ FT /FTId=VAR_006008.
1327
+ FT VARIANT 280 280 R -> K (in a breast tumor).
1328
+ FT /FTId=VAR_006007.
1329
+ FT VARIANT 280 280 R -> T (in nasopharyngeal carcinoma).
1330
+ FT /FTId=VAR_006009.
1331
+ FT VARIANT 281 281 D -> A (in a leukemia and a lymphoma).
1332
+ FT /FTId=VAR_006010.
1333
+ FT VARIANT 281 281 D -> E (in many types of tumors).
1334
+ FT /FTId=VAR_006011.
1335
+ FT VARIANT 281 281 D -> G (in many types of tumors).
1336
+ FT /FTId=VAR_006012.
1337
+ FT VARIANT 281 281 D -> H (in HNSCC; same patient as
1338
+ FT mutation Thr-278).
1339
+ FT /FTId=VAR_006013.
1340
+ FT VARIANT 281 281 D -> V (in a colorectal tumor).
1341
+ FT /FTId=VAR_006014.
1342
+ FT VARIANT 282 282 R -> L (in a breast tumor).
1343
+ FT /FTId=VAR_006015.
1344
+ FT VARIANT 282 282 R -> W (in esophageal adenocarcinoma and
1345
+ FT many types of tumors).
1346
+ FT /FTId=VAR_006016.
1347
+ FT VARIANT 283 283 R -> C (in a colon tumor).
1348
+ FT /FTId=VAR_006017.
1349
+ FT VARIANT 283 283 R -> G (in a lung tumor).
1350
+ FT /FTId=VAR_006018.
1351
+ FT VARIANT 283 283 R -> H (in a colon tumor).
1352
+ FT /FTId=VAR_006019.
1353
+ FT VARIANT 283 283 R -> P (in a breast and a lung tumor).
1354
+ FT /FTId=VAR_006020.
1355
+ FT VARIANT 284 284 T -> A (in a colorectal tumor).
1356
+ FT /FTId=VAR_006021.
1357
+ FT VARIANT 284 284 T -> P (in a lung tumor).
1358
+ FT /FTId=VAR_006022.
1359
+ FT VARIANT 285 285 E -> K (in many types of tumors).
1360
+ FT /FTId=VAR_006023.
1361
+ FT VARIANT 285 285 E -> Q (in an uterus tumor).
1362
+ FT /FTId=VAR_006024.
1363
+ FT VARIANT 285 285 E -> V (in a liver tumor).
1364
+ FT /FTId=VAR_006025.
1365
+ FT VARIANT 286 286 E -> A (in LFS).
1366
+ FT /FTId=VAR_006026.
1367
+ FT VARIANT 286 286 E -> D (in a liver tumor).
1368
+ FT /FTId=VAR_006027.
1369
+ FT VARIANT 286 286 E -> G (in tumors of colon, lung, head
1370
+ FT and neck).
1371
+ FT /FTId=VAR_006028.
1372
+ FT VARIANT 286 286 E -> K (in many types of tumors).
1373
+ FT /FTId=VAR_006029.
1374
+ FT VARIANT 286 286 E -> Q (in esophageal adenocarcinoma).
1375
+ FT /FTId=VAR_006030.
1376
+ FT VARIANT 292 292 K -> I (in LFS).
1377
+ FT /FTId=VAR_015819.
1378
+ FT VARIANT 296 296 H -> P (in HNSCC).
1379
+ FT /FTId=VAR_006031.
1380
+ FT VARIANT 300 300 P -> R (in a skin tumor).
1381
+ FT /FTId=VAR_006032.
1382
+ FT VARIANT 301 301 P -> L (in a colon tumor).
1383
+ FT /FTId=VAR_006033.
1384
+ FT VARIANT 302 302 G -> E (in a colon tumor).
1385
+ FT /FTId=VAR_006034.
1386
+ FT VARIANT 302 302 G -> V (in a colon tumor).
1387
+ FT /FTId=VAR_006035.
1388
+ FT VARIANT 306 306 R -> Q (in a sarcoma).
1389
+ FT /FTId=VAR_006036.
1390
+ FT VARIANT 307 307 A -> T (in a breast tumor).
1391
+ FT /FTId=VAR_006037.
1392
+ FT VARIANT 309 309 P -> S (in a colon tumor).
1393
+ FT /FTId=VAR_006038.
1394
+ FT VARIANT 325 325 G -> V (in LFS).
1395
+ FT /FTId=VAR_006039.
1396
+ FT VARIANT 334 334 G -> V (in a lung tumor).
1397
+ FT /FTId=VAR_006040.
1398
+ FT VARIANT 337 337 R -> C (in LFS; nonclassical form; also
1399
+ FT found in a liver tumor).
1400
+ FT /FTId=VAR_006041.
1401
+ FT VARIANT 339 339 E -> K.
1402
+ FT /FTId=VAR_022316.
1403
+ FT VARIANT 366 366 S -> A.
1404
+ FT /FTId=VAR_022317.
1405
+ FT MUTAGEN 46 46 S->A: Abolishes phosphorylation by HIPK2
1406
+ FT and acetylation of K-382 by CREBBP.
1407
+ FT MUTAGEN 55 55 T->A: Blocks phosphorylation by TAF1.
1408
+ FT MUTAGEN 135 135 C->Y: Decreased E6-mediated binding to
1409
+ FT E6-AP.
1410
+ FT MUTAGEN 382 382 K->A: Abolishes acetylation by CREBBP.
1411
+ FT CONFLICT 76 76 A -> G (in Ref. 2; AAA59987).
1412
+ FT CONFLICT 155 155 T -> P (in Ref. 16).
1413
+ FT CONFLICT 254 254 I -> D (in Ref. 7; CAA42635).
1414
+ FT CONFLICT 262 262 G -> V (in Ref. 19).
1415
+ FT CONFLICT 282 282 R -> Q (in Ref. 18).
1416
+ FT STRAND 103 103
1417
+ FT HELIX 105 107
1418
+ FT TURN 108 108
1419
+ FT STRAND 110 112
1420
+ FT TURN 120 121
1421
+ FT STRAND 124 127
1422
+ FT TURN 128 131
1423
+ FT STRAND 132 135
1424
+ FT TURN 137 138
1425
+ FT STRAND 141 146
1426
+ FT TURN 153 154
1427
+ FT STRAND 156 163
1428
+ FT TURN 166 170
1429
+ FT HELIX 177 181
1430
+ FT TURN 191 192
1431
+ FT STRAND 195 197
1432
+ FT TURN 201 202
1433
+ FT STRAND 204 207
1434
+ FT TURN 209 211
1435
+ FT STRAND 214 219
1436
+ FT TURN 225 226
1437
+ FT STRAND 230 236
1438
+ FT TURN 240 241
1439
+ FT TURN 243 248
1440
+ FT STRAND 251 258
1441
+ FT TURN 260 261
1442
+ FT STRAND 264 274
1443
+ FT HELIX 278 286
1444
+ FT HELIX 335 354
1445
+ FT HELIX 376 378
1446
+ FT HELIX 379 384
1447
+ FT TURN 385 386
1448
+ SQ SEQUENCE 393 AA; 43653 MW; AD5C149FD8106131 CRC64;
1449
+ MEEPQSDPSV EPPLSQETFS DLWKLLPENN VLSPLPSQAM DDLMLSPDDI EQWFTEDPGP
1450
+ DEAPRMPEAA PPVAPAPAAP TPAAPAPAPS WPLSSSVPSQ KTYQGSYGFR LGFLHSGTAK
1451
+ SVTCTYSPAL NKMFCQLAKT CPVQLWVDST PPPGTRVRAM AIYKQSQHMT EVVRRCPHHE
1452
+ RCSDSDGLAP PQHLIRVEGN LRVEYLDDRN TFRHSVVVPY EPPEVGSDCT TIHYNYMCNS
1453
+ SCMGGMNRRP ILTIITLEDS SGNLLGRNSF EVRVCACPGR DRRTEEENLR KKGEPHHELP
1454
+ PGSTKRALPN NTSSSPQPKK KPLDGEYFTL QIRGRERFEM FRELNEALEL KDAQAGKEPG
1455
+ GSRAHSSHLK SKKGQSTSRH KKLMFKTEGP DSD
1456
+ //