bio-polymarker 1.3.2

Sign up to get free protection for your applications and to get access to all the features.
Files changed (177) hide show
  1. checksums.yaml +7 -0
  2. data/.travis.yml +24 -0
  3. data/Gemfile +23 -0
  4. data/README.md +205 -0
  5. data/Rakefile +61 -0
  6. data/SECURITY.md +16 -0
  7. data/VERSION +1 -0
  8. data/bin/bfr.rb +128 -0
  9. data/bin/blast_triads.rb +166 -0
  10. data/bin/blast_triads_promoters.rb +192 -0
  11. data/bin/count_variations.rb +36 -0
  12. data/bin/filter_blat_by_target_coverage.rb +69 -0
  13. data/bin/filter_exonerate_by_identity.rb +38 -0
  14. data/bin/find_best_blat_hit.rb +33 -0
  15. data/bin/find_best_exonerate.rb +17 -0
  16. data/bin/get_longest_hsp_blastx_triads.rb +66 -0
  17. data/bin/hexaploid_primers.rb +168 -0
  18. data/bin/homokaryot_primers.rb +183 -0
  19. data/bin/mafft_triads.rb +120 -0
  20. data/bin/mafft_triads_promoters.rb +403 -0
  21. data/bin/map_markers_to_contigs.rb +66 -0
  22. data/bin/marker_to_vcf.rb +241 -0
  23. data/bin/markers_in_region.rb +42 -0
  24. data/bin/mask_triads.rb +169 -0
  25. data/bin/polymarker.rb +410 -0
  26. data/bin/polymarker_capillary.rb +443 -0
  27. data/bin/polymarker_deletions.rb +350 -0
  28. data/bin/snp_position_to_polymarker.rb +101 -0
  29. data/bin/snps_between_bams.rb +107 -0
  30. data/bin/tag_stats.rb +75 -0
  31. data/bin/vcfLineToTable.rb +56 -0
  32. data/bin/vcfToPolyMarker.rb +82 -0
  33. data/bio-polymarker.gemspec +227 -0
  34. data/conf/defaults.rb +1 -0
  35. data/conf/primer3_config/dangle.dh +128 -0
  36. data/conf/primer3_config/dangle.ds +128 -0
  37. data/conf/primer3_config/interpretations/dangle_i.dh +131 -0
  38. data/conf/primer3_config/interpretations/dangle_i.ds +131 -0
  39. data/conf/primer3_config/interpretations/loops_i.dh +34 -0
  40. data/conf/primer3_config/interpretations/loops_i.ds +31 -0
  41. data/conf/primer3_config/interpretations/stack_i.dh +257 -0
  42. data/conf/primer3_config/interpretations/stack_i.ds +256 -0
  43. data/conf/primer3_config/interpretations/stackmm_i_mm.dh +257 -0
  44. data/conf/primer3_config/interpretations/stackmm_i_mm.ds +256 -0
  45. data/conf/primer3_config/interpretations/tetraloop_i.dh +79 -0
  46. data/conf/primer3_config/interpretations/tetraloop_i.ds +81 -0
  47. data/conf/primer3_config/interpretations/triloop_i.dh +21 -0
  48. data/conf/primer3_config/interpretations/triloop_i.ds +18 -0
  49. data/conf/primer3_config/interpretations/tstack2_i.dh +256 -0
  50. data/conf/primer3_config/interpretations/tstack2_i.ds +256 -0
  51. data/conf/primer3_config/interpretations/tstack_i.dh +256 -0
  52. data/conf/primer3_config/interpretations/tstack_i.ds +256 -0
  53. data/conf/primer3_config/interpretations/tstack_tm_inf_i.dh +256 -0
  54. data/conf/primer3_config/interpretations/tstack_tm_inf_i.ds +256 -0
  55. data/conf/primer3_config/loops.dh +30 -0
  56. data/conf/primer3_config/loops.ds +30 -0
  57. data/conf/primer3_config/stack.dh +256 -0
  58. data/conf/primer3_config/stack.ds +256 -0
  59. data/conf/primer3_config/stackmm.dh +256 -0
  60. data/conf/primer3_config/stackmm.ds +256 -0
  61. data/conf/primer3_config/tetraloop.dh +77 -0
  62. data/conf/primer3_config/tetraloop.ds +77 -0
  63. data/conf/primer3_config/triloop.dh +16 -0
  64. data/conf/primer3_config/triloop.ds +16 -0
  65. data/conf/primer3_config/tstack.dh +256 -0
  66. data/conf/primer3_config/tstack2.dh +256 -0
  67. data/conf/primer3_config/tstack2.ds +256 -0
  68. data/conf/primer3_config/tstack_tm_inf.ds +256 -0
  69. data/lib/bio/BFRTools.rb +465 -0
  70. data/lib/bio/BIOExtensions.rb +153 -0
  71. data/lib/bio/PolyploidTools/ChromosomeArm.rb +63 -0
  72. data/lib/bio/PolyploidTools/ExonContainer.rb +245 -0
  73. data/lib/bio/PolyploidTools/Marker.rb +175 -0
  74. data/lib/bio/PolyploidTools/Mask.rb +116 -0
  75. data/lib/bio/PolyploidTools/NoSNPSequence.rb +292 -0
  76. data/lib/bio/PolyploidTools/PrimerRegion.rb +30 -0
  77. data/lib/bio/PolyploidTools/SNP.rb +804 -0
  78. data/lib/bio/PolyploidTools/SNPMutant.rb +86 -0
  79. data/lib/bio/PolyploidTools/SNPSequence.rb +55 -0
  80. data/lib/bio/db/blast.rb +114 -0
  81. data/lib/bio/db/exonerate.rb +333 -0
  82. data/lib/bio/db/primer3.rb +820 -0
  83. data/lib/bio-polymarker.rb +28 -0
  84. data/test/data/7B_amplicon_test.fa +12 -0
  85. data/test/data/7B_amplicon_test.fa.fai +1 -0
  86. data/test/data/7B_amplicon_test_reference.fa +110 -0
  87. data/test/data/7B_amplicon_test_reference.fa.fai +3 -0
  88. data/test/data/7B_marker_test.txt +1 -0
  89. data/test/data/BS00068396_51.fa +2 -0
  90. data/test/data/BS00068396_51_blast.tab +4 -0
  91. data/test/data/BS00068396_51_contigs.aln +1412 -0
  92. data/test/data/BS00068396_51_contigs.dnd +7 -0
  93. data/test/data/BS00068396_51_contigs.fa +8 -0
  94. data/test/data/BS00068396_51_contigs.fa.fai +4 -0
  95. data/test/data/BS00068396_51_contigs.fa.nhr +0 -0
  96. data/test/data/BS00068396_51_contigs.fa.nin +0 -0
  97. data/test/data/BS00068396_51_contigs.fa.nsq +0 -0
  98. data/test/data/BS00068396_51_contigs.nhr +0 -0
  99. data/test/data/BS00068396_51_contigs.nin +0 -0
  100. data/test/data/BS00068396_51_contigs.nsq +0 -0
  101. data/test/data/BS00068396_51_exonerate.tab +6 -0
  102. data/test/data/BS00068396_51_for_polymarker.txt +1 -0
  103. data/test/data/BS00068396_51_genes.txt +14 -0
  104. data/test/data/IWGSC_CSS_1AL_scaff_1455974.fa +112 -0
  105. data/test/data/IWGSC_CSS_1AL_scaff_1455974_aln_contigs.fa +2304 -0
  106. data/test/data/IWGSC_CSS_1AL_scaff_1455974_aln_contigs.fa.fai +11 -0
  107. data/test/data/LIB1716.bam +0 -0
  108. data/test/data/LIB1716.bam.bai +0 -0
  109. data/test/data/LIB1719.bam +0 -0
  110. data/test/data/LIB1719.bam.bai +0 -0
  111. data/test/data/LIB1721.bam +0 -0
  112. data/test/data/LIB1721.bam.bai +0 -0
  113. data/test/data/LIB1722.bam +0 -0
  114. data/test/data/LIB1722.bam.bai +0 -0
  115. data/test/data/PST130_7067.csv +1 -0
  116. data/test/data/PST130_7067.fa +2 -0
  117. data/test/data/PST130_7067.fa.fai +1 -0
  118. data/test/data/PST130_7067.fa.ndb +0 -0
  119. data/test/data/PST130_7067.fa.nhr +0 -0
  120. data/test/data/PST130_7067.fa.nin +0 -0
  121. data/test/data/PST130_7067.fa.not +0 -0
  122. data/test/data/PST130_7067.fa.nsq +0 -0
  123. data/test/data/PST130_7067.fa.ntf +0 -0
  124. data/test/data/PST130_7067.fa.nto +0 -0
  125. data/test/data/PST130_reverse_primer.csv +1 -0
  126. data/test/data/S22380157.fa +16 -0
  127. data/test/data/S22380157.fa.fai +1 -0
  128. data/test/data/S22380157.vcf +67 -0
  129. data/test/data/S58861868/LIB1716.bam +0 -0
  130. data/test/data/S58861868/LIB1716.sam +651 -0
  131. data/test/data/S58861868/LIB1719.bam +0 -0
  132. data/test/data/S58861868/LIB1719.sam +805 -0
  133. data/test/data/S58861868/LIB1721.bam +0 -0
  134. data/test/data/S58861868/LIB1721.sam +1790 -0
  135. data/test/data/S58861868/LIB1722.bam +0 -0
  136. data/test/data/S58861868/LIB1722.sam +1271 -0
  137. data/test/data/S58861868/S58861868.fa +16 -0
  138. data/test/data/S58861868/S58861868.fa.fai +1 -0
  139. data/test/data/S58861868/S58861868.vcf +76 -0
  140. data/test/data/S58861868/header.txt +9 -0
  141. data/test/data/S58861868/merged.bam +0 -0
  142. data/test/data/S58861868/merged_reheader.bam +0 -0
  143. data/test/data/S58861868/merged_reheader.bam.bai +0 -0
  144. data/test/data/Test3Aspecific.csv +2 -0
  145. data/test/data/Test3Aspecific_contigs.fa +6 -0
  146. data/test/data/bfr_out_test.csv +5 -0
  147. data/test/data/chr1A_C1145499T/chr1A_C1145499T.csv +1 -0
  148. data/test/data/chr1A_G540414846C/chr1A_G540414846C.csv +1 -0
  149. data/test/data/chr1A_G540414846C/chr1A_G540414846C.fa +2 -0
  150. data/test/data/chr1A_T517634750C/chr1A_T517634750C.csv +1 -0
  151. data/test/data/chr2D_C112180134A/chr2D_C112180134A.csv +1 -0
  152. data/test/data/chr4D_C14473543T/chr4D_C14473543T.csv +1 -0
  153. data/test/data/chr4D_C14473543T/chr4D_C14473543T.fa +2 -0
  154. data/test/data/headerMergeed.txt +9 -0
  155. data/test/data/headerS2238015 +1 -0
  156. data/test/data/mergedLibs.bam +0 -0
  157. data/test/data/mergedLibsReheader.bam +0 -0
  158. data/test/data/mergedLibsSorted.bam +0 -0
  159. data/test/data/mergedLibsSorted.bam.bai +0 -0
  160. data/test/data/patological_cases5D.csv +1 -0
  161. data/test/data/primer_3_input_header_test +5 -0
  162. data/test/data/short_primer_design_test.csv +10 -0
  163. data/test/data/some_tests/some_tests.csv +201 -0
  164. data/test/data/test_from_mutant.csv +3 -0
  165. data/test/data/test_iselect.csv +196 -0
  166. data/test/data/test_iselect_reference.fa +1868 -0
  167. data/test/data/test_iselect_reference.fa.fai +934 -0
  168. data/test/data/test_primer3_error.csv +4 -0
  169. data/test/data/test_primer3_error_contigs.fa +10 -0
  170. data/test/test_bfr.rb +135 -0
  171. data/test/test_blast.rb +47 -0
  172. data/test/test_exon_container.rb +17 -0
  173. data/test/test_exonearate.rb +48 -0
  174. data/test/test_integration.rb +76 -0
  175. data/test/test_snp_parsing.rb +121 -0
  176. data/test/test_wrong_selection.sh +5 -0
  177. metadata +356 -0
@@ -0,0 +1,196 @@
1
+ RAC875_c8174_1034,3A,CTGATGACTTCTCCGCCTGTGTATCCTTTGGTAAGTATCAACTTTCCACC[A/G]TACCATATGGCTAAGCCATAGCTAGAGAAGAATATGAAGAAAACAGAACC
2
+ RAC875_c8183_201,1B,GTCAACCAGTCTCTACATCTTTGAAGAAGAAGAAGAAGAGAAATGCTCCA[T/C]TGACATGGCCCACTGGAGATCATTTCCTGGCTACTCCTTTGTTCCCAGCC
3
+ RAC875_c8197_810,2B,cggtccaaccagaattttgctgcaaatgtgactgtattgtgctgttgctg[T/C]TGGCCAGCTGAATGAGCTTGTTGGCTATGCGTGTAATATGACCAACAAAT
4
+ RAC875_c82073_306,5D,ACTGCCAACTGCCTTTTCGTTCATATGTTCGTGAGTGACACGATGGATCT[A/G]TGCTTGGAGGGGTGGACCAATGTATATGTCGCGCAAGAGACCAACTGATC
5
+ RAC875_c8221_649,7B,CGTACAATTTACCTGCAGAGGTTGAGAATGTCCTTTCTAGCTGCTTTGAG[T/C]ACGACTTTCGGGATCGCCCCTTGATGTCAGATATCTTACAAGCATTTGAA
6
+ RAC875_c8221_711,7B,gatcgccccttgatgtcagatatcttacaagcatttgaaagtgctaaaga[T/C]GTGGATTATGACAACAATGGCTGGGATAGTTCTGAAAACCCAAGGGCAGT
7
+ RAC875_c8234_293,4D,GGCTGTGGTCGGCGCGGACGCCTCGGGCCTCCTGTGCTCCCCTACACAGA[T/C]GAGATGAGCGGAAGAGGCTAGTCGTTAGAGCTCCCCTATATTCTTTCTAG
8
+ RAC875_c8254_1203,6B,ttcatattgctggtgatgaaggctgtgtcggttgggaggcggaaattcag[T/C]GCCGAGTTCCAGCTCGTGTTCCGGCTGCTCAAGGGGCTCATCTTCATCGT
9
+ RAC875_c8254_594,6B,TTTGTGCTCATGCAGCTTCAGTTAGCGTCCGTCTTCTTCACATTCTCCCT[T/C]GGAACCAAGACTCACTACTACGGAAAGACGCTGCTCCACGGAGGAGCCGA
10
+ RAC875_c8254_657,6B,CACTACTACGGAAAGACGCTGCTCCACGGAGGAGCCGAGTACAGAGCCAC[T/C]ggacgtggattcgtggtgttccatgccaaattcgctgagaactaccgcct
11
+ RAC875_c8254_795,6B,ATGATCCTGCTTATCGTGTTTGAGATCTTCGGGCAGTCGTACCGAGGAGC[T/C]ATCGCGTACATCTTCATCACCTTCTCCATGTGGTTCATGGTTGTCACCTG
12
+ RAC875_c8256_464,3B,AAAAAGGTGAGTGCTCCAAGACTGAAGCCAGCACCACAGGCCAAGGCCTC[A/G]TCCCTGCGCCTCTTCCTGTGTTTCTCTACAATCTTGTCCAGTGCCCGGCG
13
+ RAC875_c82649_146,1B,ATTGGGGCTCAATGCGTCAGAGTTGCGTCGGTCTTGGATGCCATTTACCA[A/G]GCTCTGTTTGCTCTTATTCTGAACTGAACCTGTGGATTCCTCTCCTCCTC
14
+ RAC875_c8271_1352,1B,TGGCCAATCCTACCATGCTGACTATTGGATTTAACATTAATCTTAACCTG[T/C]GATATCCTGCCTCTAGGATCAGATCCAGAATGTGCACCATTTATCTGCTG
15
+ RAC875_c8271_1469,1B,GACTTAACCTTCACACCATGACCAACTTGAGGCTTCCTGCTCCTGTAATC[A/G]CCTTCAGGCTGCCCTCTCTGCCAGTCACTTAAGAGATCAGCATGGCTACC
16
+ RAC875_c8271_887,1B,CTGGCCAGCCTATCACTCTCTGGTGACCTCAGTGATTCATTGGCTTTCTC[A/G]TTGCTATCATGCAATTCAGAGTTGTCATAACCATGCATGTCCAGGTTTGC
17
+ RAC875_c8282_644,1B,TCGAAGGAAGACTTCCAACGGTGTGCAAATGCTCAGATGGCTGTGTATCG[A/G]AAAGCCACATTTGGATGGGCTTACTGGTCGTACAAGCATGTTAGCAACCA
18
+ RAC875_c8286_432,2D,CCGACAGCTGCCCTGATGTCTGCCATTTACGAGGAGAACAAGGACGAGGA[T/C]GGCTTCCTCTACATGACCTACAGCGGCGAGAACACCTTCGGATTGCTCTA
19
+ RAC875_c8286_574,2A,GTAAATAAGGCGTGCCAATCAACTGTGTATATATTCCGGTTTGCCTCGTC[A/G]TAGGATCTTTAAATTGCACAACCAAGAAAACCTATTCTTATCCTGACTTA
20
+ RAC875_c82888_83,1D,TCCCGATGGGCGTGTTTGGCTCCGTGGCCCCGGTGCTCACCCTGGGATCC[A/G]TCTCCAAGAGATGGGTGGTGCCTGGATGGCGGCTTGGATGGATCGTGACC
21
+ RAC875_c829_1971,2B,CCTGACGTTGAAGGACAAAGACGGTGAATATATGACGAAAGAGGTGCAGC[A/G]CGAGGTGGAGACATCAGTGAAGAGGAGGACCGATGGCAAGGCGCCCAAGA
22
+ RAC875_c83182_90,3D,GGCTATGGAGCTTACGGGCCACCTCCTGGGATGGGCGTGCAAGGCATGTA[T/C]GACGGCGGCTACAATACCTACACAGACAGGCGCTAYRGTACGGGTGCTGG
23
+ RAC875_c83211_30,5A,GACGTGCACCGGTTCAGCTACATATCGCG[A/G]AAGGGCCTCGAGACCTTCCGAGAGCGGCTGAAACATGGTGTCATTGATCT
24
+ RAC875_c83414_707,6B,TTCAGCGGCGACACGGACTCGGTTGTCCCGGTGACAGCGACGAGGTTTTC[A/G]CTCAGCCACCTTGGTCTCAAGACTAAGATCCGCTGGTACCCATGGTACTC
25
+ RAC875_c83712_84,2B,GCATCTACTTGGAGGTGCCAGGTTTCGTTGGCCCCGTGGAACTGGAACGC[A/G]TCCCGGACGGCCATGGAGTCGGCGAGGTGGAACCACGAGCCTCCCTGGTC
26
+ RAC875_c84224_177,7D,TCCATGGGTGGAAGCCACAAGTTACATGCCATGATCCAACTGATATATCT[A/G]AGGATAATGGCATGGCATGGGCAATTGATATCCCATGCATCCCTCAGACC
27
+ RAC875_c8452_1646,5D,CGGATTGATGCCATTGATGGGGCATTGCGTAGACCTGGCCGTTTTGATCG[T/C]GAGTTCTATTTTCCTTTACCTGGCTATGAGGCACGAGCTGAAATACTGGA
28
+ RAC875_c84527_446,7A,ACGGGAGAAAAAACTTATGACATGCCCATCCACTACCTATCTTACATCGA[T/C]CATAACTTACATGAAAACAAACGTTGCCCACTATGAACACCACAACATCC
29
+ RAC875_c8459_1233,3B,AGGAAGAACTACCCTGCTGGCACTCCTAGGACAAGTCCTAGGTTTGAACC[A/G]AAGCGTGAATGTCATAACGGGTCTGTGGAAGAAATGCCAGCCAAGGTTCT
30
+ RAC875_c8459_1291,3B,AATGTCATAACGGGTCTGTGGAAGAAATGCCAGCCAAGGTTCTGACCTCT[A/G]AAGGTGGTGATGCTGAGCTGGTGAGAGGGGAAGTGAAACATTCTAGGAAG
31
+ RAC875_c8472_1174,4A,ATTGTACTGGAACAGTGAAGATGCTGACAATATCATTGGAGCATCGAGGC[A/G]TGATCAGTTGGATTGGTTTACTCTGGACCCAAGGGTGGCACAAGATCAGC
32
+ RAC875_c8481_2685,6A,caacggacctgcaccaatttagttgcttgagttgctccacattaactaga[T/G]CTCCCATATATTTGGTGCTTGGTTTAGTGTTTGATGTCGGGCAGAGGAAT
33
+ RAC875_c8503_644,1D,TTTCCAGTATCGACATGACCAAGGATGCAACAGATTGGTGAACGGAGGTC[A/G]CTAGCATTGTCAGCATCATCATCTTTAGAAGATCCTTTCTTCCCTTTCTT
34
+ RAC875_c85031_525,1A,CCTGCGCCCACCAGCAGGAACTGTGGAATCAGCATGAACACGCTGATCGG[T/C]AGCGCGGTCCCATTCGTGGCCGTGGAGGCGACGGTGAGACGCTTCTTCTC
35
+ RAC875_c85261_84,2B,gagcgcatctcaggaagtgctggtgatgtgctagaagacaatcctgtggg[A/G]AAGTTAAAGGTTTTCATATATGACTTGCCAAGAAAGTATAACAAGAAGAT
36
+ RAC875_c85778_184,1A,GTGCTACCGTGGGCGTCTTCGCCAACATCTCACGCCGGTGAACGTGTCCT[A/G]CCGGTGGTTCCTCCTGCCGTCATAACGTAAACCAGCAAAGCATGTGCGCA
37
+ RAC875_c85927_269,2B,GCAAAACGTGCCATGAATGTATATGATGAAGCTGTAAGGGCTGTTCCCAA[T/C]ACTGAAAAGATGAGTATGTATGAAATATACATTGCACGTGCTGCTGAACT
38
+ RAC875_c8624_539,6A,AACCAGTCACCCTAATGTGCATAGAAAAGATTGAAGGGTGATGCCACAAG[A/G]accgatgaggaaatcaaactgagggtatctacggttatcctattgagatc
39
+ RAC875_c8624_825,5B,CACAGGGAATGACAGGATGACCACCATCACAACCAACTGGACAGAGTTCC[A/G]CTGTCATGCAAACATGCATGAGGGTGACATCTGCGTCTTCTACTTCAGAC
40
+ RAC875_c86296_278,6B,CAGACAAAGCTAAGCTTCCTAGCATCAACTAGTGTCACTGATAGCTCTCC[A/G]ACAAAGTCCTTGTTTCCATCTTGAACATCTTGAACTAAGTCACTTGCAAC
41
+ RAC875_c864_88,1B,CTCAGGAATTGGCTTAAAGAGATTGGAGCTTGATATATTTGATGATGACC[A/G]TACCTTGCCTTATATCGACAGTTGGCTCCAGTTTGCTGTCACACCAGGGA
42
+ RAC875_c8642_231,5A,TGGCAATGTCGACGAGGCGAAGATGATGCTCCAGAGGCTGCGTGGCACGA[T/C]GGGGGTTCAGAAAGAGCTCGACGATCTGGTCACTGCCAGCAACATATCCA
43
+ RAC875_c86537_84,7D,GGAAGGACGAACAGAGTTCTACCGGTGATCCGTGTTGTCGCTGACGGTGT[A/C]ATAGGATCTGCGGTGCACGTGGACAAGGCGATGGGGCTGCCAACCTACCT
44
+ RAC875_c8662_140,3D,AGGGAAGCACCGCATAAGTCGCCAGTACTATGAGGAACCACGAGGATTTC[A/G]TGATGGTCCTCCTCCTCGACTTGCACGAGAAAGGTCTATCTCACCACGTT
45
+ RAC875_c8662_762,1B,gctgagattgagaagagaaagccacctagtttcagcggccatggagctta[T/C]GGACCACCTATGACAACTCTTGGGATGGGCTTGCAAGACATCTACAACAG
46
+ RAC875_c8662_917,1B,CTATCCGCACCCATGATTTGGGCTTTTGATCCTTGTCAGAGTTCATCACC[A/G]TCAGTACTTGTGACAAAGTTCCTATCTTAGCAGTGAAACTTGTGGTGACT
47
+ RAC875_c8684_1668,2D,TTCTCCTCCAGGGACAGAATCTGGCCCTTCAGCTTCAAGATGGTGACCGC[A/G]CTGTCGTACCGGAACTGCTGAGCCTGGTAGAACAGCACGGCCATGTCC
48
+ RAC875_c87052_193,2B,CACCGATGTTCACAATGAATGCTCCGGGTGTGGGCGTGACATCTACCCAA[T/C]GGTCCTCGTTGAAGATCTGTAGTCCGCCGACTTCATCTTGGAGGAGTACG
49
+ RAC875_c871_1345,7B,CCAGATCAAGTGATCTGATCATCTCCTGCGGACAGAATCGCCCTACGCTC[A/G]GTGTAAGTTCCCGGCCGTGCACGAACCTGTGACCGCTAGAGCAGTGGCAT
50
+ RAC875_c8714_653,4A,GAAAGTGAACATTGAAACCATTTTTGGAGTGCCATGGATTTGCTTTCAGA[T/C]GATGACAAAAAGCTTCCCCAGGTTTCAAATATGCTTCCCTTATTGAAACG
51
+ RAC875_c8721_212,6A,AGACCTGATTATTGCCTGGGGCCTCATTTGCGGCAAATGCTATCTTATGG[A/C]TGTACCCGCTTAGAAATTGGTGTTCAGAGTACATATGAGGATGTTGCACG
52
+ RAC875_c8751_378,6B,CAGGAGATGTCCCTCATGGCCAGCCTCAGCAACCCCTACATCGTCGAGTA[T/C]aaggacggatgggtcgacgaggggacctccgtttgcatcgtcacaagtta
53
+ RAC875_c8752_1079,7B,AAAACAATCAAATTGCCAAATATCAGGAGACCCAAAGAATCTGGAGCTCA[A/G]cctgcatgatcttcatcccgcctcttggtactgcgttgcgtggtatccca
54
+ RAC875_c8752_705,7B,TGTTATGGCTTGGAAGTGAAGGCACAGGATCTCCGTAGATCGAAAGGCTT[A/C]TGGAATAGTCGTTATCAGTTTAATGCCTACTTTGTGCCATATCTATCTGC
55
+ RAC875_c8754_346,7D,ATGAGACTCGACCTTGTTTTACCTTAATTATCATGGTGTGCCTTTTTTTA[T/G]AATAGCTCACCATTTTGTTAGTGGCAATAAAATGCATCTTTAGGCACACC
56
+ RAC875_c8784_503,7A,GCTGCTCATCTGTGGAGGAACCGTGGAAAGTGCCCTCTAACACCAAGTGA[A/G]ACAGCATTTATCCTCCAAGCACTAGGTATTCCTACAGAGACAAACATTTA
57
+ RAC875_c87890_234,1B,agtcgctccaggcatggggcgtccaccacagcgatttcctcaaagaagga[T/C]AGGATGATCTTCACGCACCGGATGCTTTGGCTGACAAGGCGAAGGCCAAG
58
+ RAC875_c8878_232,1B,AATTACTATTACATTCATGACCTGATGCATGACCTGGCAGAGAGTGTCTC[A/G]CGAGTTGACTGTGCAAGAGTTGAGAGTGCTGAGGAGAAGCAGATACCTCG
59
+ RAC875_c8888_802,1B,TGGGACAGCATAACCATTGCATACTTGTCAATTTTCTGCAGCTGCTGTGT[T/G]TTCGGGTGGAACGTGCAGAGGCTTGGATTCGGCAACATGTACGTCCACAT
60
+ RAC875_c8898_382,5B,TGCGGCAGGCACCTCGACCACGGTGTCCTTCTCGTCGGCTACGGGGCGTC[T/C]GGCTTCGCGCCTTCCCGCTTCAAGGAGAAGCCCTACTGGATCATCAAGAA
61
+ RAC875_c8907_453,6B,TGTCAAACCAGCCCAAACTCCGGCCAGGCCAAACACACGTGGAGCATATA[A/G]caagaccaacgatgatatcaccccaaccacaatcgtagcttgagcgacat
62
+ RAC875_c89201_221,5A,TCTTCAGAAGGGATAATAGATGACAGTGAAAGGAAAAGGAACAAACCAGA[T/C]GAAATTTGAAGTCACCTAGACCGAGCCAAGCACATCTTTTTGTACATGTA
63
+ RAC875_c8927_1434,5B,GGTTGGGCAGACATTGAGGAGGAGGGAGTCTGGAAGGGGGAGGGAGGAAA[T/G]CAGGTCAGGAGACATAAACGCCGGCAGCCCCTTGCGTGTGGACAAAAGCA
64
+ RAC875_c89312_129,7B,ATGACATTCTCCACATACCACTTGTATGTCTCGACAAGCCCCTCCTTGAG[A/G]GGAACCTTGGGCTTCCACCCCATCCCATGTATCTTGGAGCTATCCATGAG
65
+ RAC875_c89312_61,7B,TCATATCAAGATACAAACTTTAAGAGGCAAAGGAGAACATGATACCACCC[T/C]GTTACTTCTTGTCGGCGATGACATTCTCCACATACCACTTGTATGTCTCG
66
+ RAC875_c89709_124,5A,tctcaaaggcatgcaactccgagaatcggtggaaatggcagccatcgatg[A/C]GGACGACGATCCAGTTGGAGGCCGGGAGGTGGCGGTGGAACTCGAACTCC
67
+ RAC875_c899_1326,5B,TGACCAAGTAGGAGTGGGAGTCAAAATGGCGAGGGTATTGGAGAACGATG[A/C]TGTCAACTCAGCTAATGAATCAGGGAATATGATGGCATGCTTATTACCTC
68
+ RAC875_c89978_107,3D,ATGGCCGTGTGGAATGCGGCGTGGAGAGCGTCGAGGCGGTGCTTGAGCAC[A/G]TTGGGGAACCGGAGGATCATCGGAAACTGGATGTCCTTCCTCTTCTGCTT
69
+ RAC875_c89978_152,3D,AGCACGTTGGGGAACCGGAGGATCATCGGAAACTGGATGTCCTTCCTCTT[T/C]TGCTTTGCAGCTTGAATGACGTGCAGCACGTCCATCTCCTGCCCTGCCTT
70
+ RAC875_c90425_234,4B,TGCCCGACTCCGGTTACAGCTGAATGACTGCTTGTTTATCTGCTTTGAAA[A/C]CCTCGACTCATATGTGGTGTCCCTTTTTACCGCAAAACCCACACGCCGGG
71
+ RAC875_c90426_136,2D,atggctcatcatgcgacggacgtccatcagtggctctccgccacgggtgc[A/G]CTCCTGGATGAAGACACTTCGCTATGGCTGTCGCCGGGAGATAACCCGGC
72
+ RAC875_c90426_151,2D,acggacgtccatcagtggctctccgccacgggtgcgctcctggatgaaga[T/C]ACTTCGCTATGGCTGTCGCCGGGAGATAACCCGGCTGATGGTGGATTGCT
73
+ RAC875_c90431_188,1B,ATGAGGACGACGAACTCCTGGAACTGGATACCCTTGCGGCTGTCGACGTC[A/G]CAGTAGCGGTGCACGTCGTCGGCCTCCTTCTCCGACATCCGCACCTCGAG
74
+ RAC875_c90431_275,1B,ATCCGCACCTCGAGCTTGCTCAGGCAGCTCCGCAGCTCCTCGTTGTCGAT[A/C]gtcccgttggagtccgtgtcgtagtggtcgaagacgtcccggatgtcctt
75
+ RAC875_c906_657,7B,GTAGTAGTACTACAACCACCCTCACTACGTGAGCATCTCCACAACGAGTG[T/C]GTGCGTGCTTCACTTGTGTCCTGCTAGCTTCAGTTAGCTGCAGTATAGAT
76
+ RAC875_c90778_632,4D,ATGACACCGGCAATGCGTCGTGGTCCAGCTGGTCCAAGGACTTTGTGCAA[T/C]GCTTGTGGACTGATGTGGGCCAACAAGGTACAATCTCATCCTTAACATGC
77
+ RAC875_c9122_395,2B,CTTACTATAGCTAAGAACTGCCCAAATTTCACGCGATTCAGACTCTGTAT[T/C]CTTGAGCCTGGGAAGCCTGATGCCATGACAAACCAACCATTAGATGAAGG
78
+ RAC875_c9130_154,5A,CCAAGGAGCTACTACAAATGTACTCACCAGGGCTGTTCGGTGCGCAAGCA[T/C]GTGGAGAGAGCGTCGCACGATCTGAAATCCGTGATCACGACGTACGAGGG
79
+ RAC875_c9140_470,3D,GGCGGTGGTAATGTGTTCCAACTTGGACGGCGTTGCCCCCATTCTGGTGT[A/G]CGGAGCTAGAGATGTGTAGTGCTATGGATGAAAGTCATGTGCAGCTTAGG
80
+ RAC875_c91464_170,5A,CTGCTGATTTAATATGTTCTTTCTTAACAACCCCATCGCCTATTGACACA[T/C]GACCATGAGGAATGCCACCTGATGCTTCATACAACAGCTCACCGTCCAAC
81
+ RAC875_c91986_410,5B,ctatgcccggctgaatcacttaatttcacagagaacttgtatccatcagg[T/C]GGGGCAGCAGCATTCGTCAGAATCTCCGCAGGAGCATCAACAACTATCTG
82
+ RAC875_c92239_415,6B,AGGTTGAGATGAACAACAGCAAGAAGGAAGAAGAGATTCAGATTGGTGGC[A/G]TGAGGTGCAGCAAGGGACTCGTGGTAGTTATGGTGGATGGGTCGCGGTGC
83
+ RAC875_c92348_127,6B,ACATCCTTTCTTGCTCACCCAACACACGGCATTCCTGTAAGCCTCATACT[A/G]TCGAGTTGTTTGACGAGATGTGCATCAATAATTTCAGTTAATCCGTGTGC
84
+ RAC875_c92464_53,1B,GTATAATGTACGCACATGATCAATCTATGTCCATATCGTCAACATTATAA[A/G]CATTAGTGGACCGTATATGCATTTGCATGACTGAGCCATCTCAGCTAAGC
85
+ RAC875_c9309_145,7A,GGCAGGGCAAAGCAATTACCAAATGATTAACCACATGTCACCAATAGGCC[A/G]tataaagttgttcagtgaggaggactacaagattggcaccagcaacaacc
86
+ RAC875_c93097_105,5B,GGTTGGTTGAGAGGTGATGGTTGTATATCTCCAGATGTTGTTAAGATGTT[T/C]GGGCTTGCGGTTTCACTGGCTTCTATGCTGTCATCTCTAGGTGATCTAGT
87
+ RAC875_c9318_401,4A,AGAAACTCCCTGAATGACTCTGGTAACTTCTTATCAGAAGTGGATTCCTC[A/G]TTGTTAACTTGATCAAAAATCCTATACAGGTCTTGCACCAGTCTCGTAGA
88
+ RAC875_c9386_358,1A,TTTGTTGTATAGAATTCTTGGCTTCGGTTAAAGATCATTCTGATCTTGAG[T/C]GCCTATAGACATGCTGTTGTACATAGTATATACTACCGATCGCTTCTGTA
89
+ RAC875_c9412_75,6B,TCCTTGAACATTGATGATCTTGCACTATCAGCTTGACTGCGGAGCAAGTC[A/C]tgtgcctccttgctggacttcaatgcactttccagctctatctgaagccg
90
+ RAC875_c94439_63,3D,GCTTACAGCTACGGGCTGGAGGCAGGCTCCAAGCCGGAGTTGCTCATCGC[A/G]ATGAGCTGCCTCACAAAGGAGGCTAATTCCAGAGCCTTCCTGGTTTGCAA
91
+ RAC875_c94519_419,4B,ctctgttrgagytggcacctgcgcctgccgccgccatgctgattcttctg[A/C]GGCCTTTGCTTAATAGCTACTTTGGTGGCCACAGCGCTGCTCTCTTCTTG
92
+ RAC875_c9457_457,1B,GGAGTCAATGTAAGTCGTCCCCGCAGCTCCAAAGAAGCCGATGATCCGGG[T/C]GGAAACTAGCGGGACGTTGAAAGAACCCCCAGAGCCGGCAGTGCCGCCAT
93
+ RAC875_c9457_788,1B,ACTAGTGCGAAAGGAGTGTATTCGATGTCGCGAGGTTCGCCTCCATCGCC[A/G]ccccatggcccgatcttcacaggcttgctcatcttgaacctagctagcaa
94
+ RAC875_c947_383,3A,GRCATAGATATGATTCCGACGAGGATAATGTTGATCAGCTGCTTGAACTG[A/G]GAACTTTCACTGGGAAGAGGGCTATTGAATCACAATGTGGAAGCTGGTAC
95
+ RAC875_c9476_916,5D,TGGATACAGGCTGGCTCAATGCACACGGGTTGTACACAATAAGCTTGATT[A/G]CCCTTTTGGTTAGGATCTACACCAGGGTTGGAAGATTTAAGAAGTGTAGG
96
+ RAC875_c9494_651,7B,GTAACTTCTCTGGAGCGAATCCTTCCAAAGCGCTGCCGACAACATCGTCC[A/C]TGTGGCGCTGCTCCTTCCTTTTCGTGCCTTTTGCTTCATTGACCTCCTTC
97
+ RAC875_c9500_1796,2B,TTGCCCATGACACAGCTAGATTCTGTCACCTCAATCTTTGTAATCTCATC[A/G]TCTTAGGACATGCCACATCTTGCAATGTTGTGAGTAGATGACAGATAAGA
98
+ RAC875_c95103_67,7A,GTGTGCATGTTGGATGGTCACATTCTAGTGTACTAGCTAGCTAGTAAGCT[T/G]GTTTTGCTACCGGATGATTGAATGTCATCTCAGTTTGTACCTCATCTAGC
99
+ RAC875_c9523_328,2A,TCGGCGTGTTGATCCTGGAGATCGTGTGTGGCCGTAGGAACAGCTCCCTC[A/G]ttgatcacgaatggtcaatgaaccttgtgggccacgcatggacgctgtgg
100
+ RAC875_c9542_235,7A,TATTTCATCCGAGCAGGGAGAAATGCCAGTAGTTCAATATTGCCAGATGG[T/G]CAACTGTCTTATTAGGATGGAATCCCGTCCGTATAAGATTGGTGGTTCCT
101
+ RAC875_c9543_99,7B,CGGAGTAAATATATGAAACACAACGGGGAACTTGTGTTTGCTAAAATGAT[T/G]GAGCGACTACTCTGCTTTGAATATATGCAGGGCGGAAGCCTTGAGAAATA
102
+ RAC875_c95993_265,3B,GCGGCTCCATGGAAGCCGCCATCATGTTGTCCGACTAAATGTGGAGTTAC[T/C]TGTGCAAGTTCCACCATCAACAAACACAAAGTTCTGCATGCTATCATCGC
103
+ RAC875_c9601_1680,1D,CTGATGAACCAGAATGCCCATTCCTTATGAAGCGTGGGTACTGTAAACTT[A/C]gggcacaatgtaagttttatcacccagaggcttcgagcccaacagatgca
104
+ RAC875_c9617_395,5A,TCCACTTCCAGCACCCAGCCCTCCCAGATATCGAAACTATGGCTTGCAAA[T/C]acaaactccatcttcctattgatctgcaacaattttgccaccagcaacaa
105
+ RAC875_c9643_641,4B,GACTCATGGTTGAAGGTCCACTTGGAGCCCGACCACATAAAGATCCCACC[A/G]TTCTTTGAGTCTGTGTCCATATTCAAACGCATACTGGAAAATAGGCCTTG
106
+ RAC875_c9677_131,7A,TCCCCCTACAGCGACTACGTCCGCGACATGCGCAAGCTTTTCATCGTCGA[A/G]CTGCTCAGCCGCCGCCGCGTGCAGGCCGCTTGCTACGCTCGCGATACCCA
107
+ RAC875_c96815_366,7B,AGGAGTGCCGCGAGGCCATGGACGCCATCAAGGCTCAGCGCGACCACGAC[T/G]AGAGGGTCCTCGCCGACTTCAAGCGCGACGGCTACGCCTACGTCCAGGTT
108
+ RAC875_c9691_870,2A,ATGTACGGAAAGGCAGCCGAATTCTGGGCGGACTTGCGCCTTGAGCTCCT[A/G]TCAGCAGGTGAAATCTCTGGAGAAGAGAAAGGTGTTTCAAATCAAATATG
109
+ RAC875_c9697_1091,7B,GTGTATTTGCATGGTAAGTATGGAGCCGTACCTCCACTCATCTGGGTCGG[T/C]GGATCAACATCGAGGACATGACCAGGAGGGGGTGGGTGGGTGTTTGTCTG
110
+ RAC875_c97040_104,1A,CCTGGCGAGGAAAACCACATCAATGGGACACAAAATGTAGAACCCAATGA[A/G]TGGTTTCATGAGATGGCCCCGATGGCACACAGACTCCTTTCAGCTTTAAT
111
+ RAC875_c9706_2240,7A,TCACTTTCTGGTCGCACTTCCACCAGTTGTGTGATATCTTTGTTCACGAC[A/G]CTCCTCCCACCCATCTGAATCTCAACAGGCTTTGTCAGCACTTTACGTGC
112
+ RAC875_c97462_415,2B,CGCTAAAGAATTATTTCCGTGGGCAAAATGATCTATACCTGCTACAAATT[A/G]acactgccaagattgcagatggcttaatttatgaggcagctgatggctgt
113
+ RAC875_c9791_2297,1B,TTGTCAGAGGCTACACCAGCTTCGGGTGTTTGAGCAATCCAAGAAGGTAT[A/C]GTCACACAGTAACTCCAGCCTGTTTGAGGGTTATGTGGCCAGACGGTGTT
114
+ RAC875_c9795_209,3B,CAAACTAAGTTGCACGCCGTTGGGATGGTCCTCCGTGGCGACCCTCACCG[A/C]AGCATCTGCTTCCTCCAGCTCGACGTCAGTTGCTTTTTTCACACAGAAGC
115
+ RAC875_c97988_123,2B,CTTCTAGAAACACCGTTGTATTCCTCCTCGGACTGTTCCTCTCGTCCGTC[A/G]CGATGAGCAACGCGGCAAGAATGCTAGAGGAGGAGATGGCTCTGTCCAAA
116
+ RAC875_c97988_87,2B,GAAGCGTAGAACAACCATAGGCGCCCAGAAAAATGGCTTCTAGAAACACC[A/G]TTGTATTCCTCCTCGGACTGTTCCTCTCGTCCGTCGCGATGAGCAACGCG
117
+ RAC875_c982_710,6B,TGGGAGCCATAGTTGTTTGGGCAGGAGCAAAATGCCTTTGTGATGGTCGA[T/G]AGCTGGACATGGGTCTCGATGCCGATAACAGATTCAAAACCTTGTATCTT
118
+ RAC875_c98608_173,5B,CTACAGAAGATGAGATCGTCGCTGCAGACGGTGGAGGCCCTGCTCGAAGA[T/C]GCTGAGAGGCGGTCCATCACGGATCAGGCGGTGCGTCTGTGGCTGGGGCG
119
+ RAC875_c98794_101,3D,cataaatcgtcatacatatagagaggggaatccagggcaatctcagggtt[A/G]GGGAGCAATCCAGCAATGATCACCAGCACCTGAAAGTACCATGTCTCAAG
120
+ RAC875_c99286_60,6A,GCAGATTAAGGTCAGAGGAAGCATCTGCTACGAGGAACATCTTCGTCTTC[A/G]ACCTACAGGTGGAATATGCAGAGCAAGCACGGGCGTGCATCCGTGCCGCC
121
+ RAC875_c99286_90,6A,CGAGGAACATCTTCGTCTTCAACCTACAGGTGGAATATGCAGAGCAAGCA[T/C]GGGCGTGCATCCGTGCCGCCTTGGGTAGCCACCCCAGATTCGTCGTGCCC
122
+ RAC875_c9932_705,2B,TGCCGATGCAGATGTCCAGCAATGATAAGGTTGCTACGCTCAAAGAACAA[T/C]GGATGGTACATAAGCGAGCACAGGGAATTCCACAACCACTCTCTTACAGA
123
+ RAC875_c9934_252,5A,TAGAGTCGGACGCGTCGTGATGGCCGCAGCGGCCAAGCATCTGACGCCGG[T/C]CGTCTTGGAGCTCGGTGGCAAATGCCCGGTGGTTGTCGATTCAAACGTCG
124
+ RAC875_c9934_814,5A,CTCCAGAACCAGTTCGAGGGGGCCATTTCTGCAGGAGGAATGCTCTTCAA[T/C]gacaccagcatacatctcacaaacccatacctgccatttggaggagttgg
125
+ RAC875_c99584_503,4B,GGTCTTTGCCCTCGACGGCGTGATCCTTACCGGCTTCCACCGTCTCGGAC[A/G]CCTTCCCCATGGCCTCGTCGCCCATCTTTTTAGCCGCCTCGGTAGTCTCG
126
+ RAC875_c998_939,6A,TCAAAACACTCACCCTTGGTGTGTCCTTTTCTCTTGCAATGGTCACAAAG[T/C]AATTTGCTTTTATCCACCTTACCAAAGGAATTTGTAGCACGACGAGGTTG
127
+ RAC875_c999_612,2D,GACAAGTTCATGGTGCACATCGAAACCCATGGACAGCCAGAGAAGTCGCA[T/C]AGCTTCAGGGATTTCATTGATAAGTGCCTCAGCCTGCTGACCAAGGGCAA
128
+ RAC875_c9994_887,4B,TGGGGACTTGGGAGGCGATCGTAAAAGCGGTGTGCTACAGTGTAATGCAC[T/G]AGCAATATGTGAAGATTTTTTTAAGGAGGGGGTTAATAAACAATCAGAAA
129
+ RAC875_c99953_224,2B,GTCGAGACTTACGAGCTTGGGGAGAGTGGCTCACACTATGTGGATGACCA[T/C]GATGGAGAGGAACGAGTTAAAAGTGCTCTTGCACATATTGGCACTCATGC
130
+ RAC875_c9998_353,7A,GGTACACAATGTAGCAATATTGTGGAGCATTTCGGATTTACACATCTTAG[T/C]GCTGGAGAGCTGTTGCGCTCAGAAATCAAGTCTGGTTCTGACAATGGAAC
131
+ RAC875_rep_c100137_114,6B,GACCCACGGATCATTGCAGTCAGCGGCAATGCCATCAAGTCACAAATATG[T/C]GATTGTTCTGAATTGGACCAAGAGCTTGGGTCCTTGATCGTCCGGTGAAT
132
+ RAC875_rep_c101430_180,6A,GTTGAACATAGGGGTTCTTGGCCTGAGCATGCAAGTGTATGGCCGGGACA[A/G]TCGTTACGTGATTAATATGTTGGGAAAATCAGTAATGGTCGAGCAAACCG
133
+ RAC875_rep_c101664_297,2D,ggcttatggtttatcacctcaggtgccatccatctgtaggtgccagtttc[A/G]GCAGTCATATCTCCCTCTTGCGATCGTTGACGAGAGACACCAAAATCTGC
134
+ RAC875_rep_c101933_656,1B,ATTCATCCCAACCCCCCATATGTGGCATCCAGATCGTACATAGCACTAGA[T/C]GGATCCACATCTAGGTCCCCTGTGTAGTTGTAGTCATCACCATTGCTCTC
135
+ RAC875_rep_c102406_205,4D,TGAGAGGTCGACCCAGGCTACTAGGCCTAAATCTCCTTTTATGGTGATTG[T/C]CTTGTATGTGGTGAGCTGGTAGGGGACTGAATCGACATTCACCAGCACTT
136
+ RAC875_rep_c102406_390,4D,ACGAAGGTGCAGTCAGGTTTGCCATTGCTCACAATGGCAAAGGAGTGATC[A/G]TTGACTGGGTGGTCGTCGCCCGGCTGCTTGATGTGCTTGAGCTCAGGGAC
137
+ RAC875_rep_c102485_468,2B,ATGCAGACCCCACGCCGAGCCTCATGGTAGTATTTGACCAAAAGATTAAC[A/G]caatcggcctttagtatatcgttgcatccatgtcgcagtgaagtttctgt
138
+ RAC875_rep_c102601_57,2D,GGCGTCCGCATCAAGCCGTGGGAGAACTCCCCTACCAAGAGCCTCGCCGC[A/G]CGCATGCTGTTCGAGAACATGGTGATGAAGGACGTGCAGACCCCCATCAT
139
+ RAC875_rep_c102709_719,3B,TATCGCAATGCCTTTCTTTTTAAAAGATTGCCTTCTTTCGTGAGGTGTTT[A/G]cattggtctttcagtaaacagaaccttgattcactgtgctgaattttgtt
140
+ RAC875_rep_c103893_601,2D,CCATGATGAGTTAATACAACATACGCTTTGCCATTCGCCCTTTGTGGTGT[T/C]GAAGCTTGCAGTGTAGCCAATAGTATCCCATTCGTAGCTAGTTCTTATGA
141
+ RAC875_rep_c104133_1757,1B,TGTTCTTTTTCATGCTATCATGTAGGTTATTGTGATTGTAGAAAAATCTA[T/C]AGATCTGCTTAGCACTTTTAACTATCACGCCAATCTCACGAAACTTAGCA
142
+ RAC875_rep_c104133_703,1B,ATCGTCCCTCCTTGCAAGACGAGAAACTTTCCTACTTGAGTTAAGCAAAC[A/G]TATTTTCTCAAACACGGCGCTAGCAGCATCAACTCCATCCAAGATTGCAT
143
+ RAC875_rep_c104197_411,6B,ACTCTTTTGAGCATTGCAAAGCATTATGAAACCGGTGAACCTCTTCCAGA[A/G]GAAATCTATGCTAAGCTTGTGGCTGCAAAGAATTTCCGTGCTGGCACCTT
144
+ RAC875_rep_c104674_867,7B,CTTGACATTCTAGAGGGCAAACCAGACTTGATCATTGGCAACTACACTGA[T/C]GGCAACTTGGTGGCGTCCCTCATGTCAAGCAAACTAGGAGTCACACAGGG
145
+ RAC875_rep_c104893_620,6B,TTAGCGTCCGTCTTCTTCACATTCTCCCTCGGAACCAAGACTCACTACTA[T/C]GGAAAGACGCTGCTCCACGGAGGAGCCGAGTACAGAGCCACCGGACGTGG
146
+ RAC875_rep_c104943_272,7A,CTGAYYCCCCATGACACTGTTTCTGTCCTTCAAGCATGTATCCAAGTAGA[A/G]GTCGTTTACCTGGTATCTATCATCAGGAGAGAATGGATATTTGTTAAGCT
147
+ RAC875_rep_c104986_200,1A,GTCACAATGTCCAGTAAAGATATCCCTGGGGCGGAGGTCCAGGCTTACAA[T/C]GATGAAATCCCCATTAAGTTAGGTCAACTTGATGGTGATCGCATTGGCTC
148
+ RAC875_rep_c105012_111,7B,ATCCCAGGTTAGGCTAGATTTGGTAAAGCTTCTGCGACAAGATAGCGAAA[T/C]AGACAACACGTGGAAGGACAGCAAAAGGATTCCCCACAGAACAGCCAGAA
149
+ RAC875_rep_c105053_57,2A,GCATCCATCTTTCCAGTCCGTTCAACGATTGAATATTTTATAGCAATGGC[A/G]actgtagcccttgtgtttgctgctgggctagttgtgcgttccttcagagc
150
+ RAC875_rep_c105085_313,7B,GCTGATCCGGCGGGGCAGGATGGACAAGCACATCGAGATGTCCTACTGCC[A/G]CTTTGAGGGCTTCAAGGTGCTCGCCAAGAACTACCTAGATGTCATTGAGC
151
+ RAC875_rep_c105150_589,2D,GGAGGAAGAATATCCCAGTGCTCGTAGATGCTTCCAGTTTGCTTCTCTTC[A/G]TTGTCAATGAGAATGCTGTATGTGGCATCAGGGCGGATGATCAAAGTGTA
152
+ RAC875_rep_c105184_88,3B,GCATTTGAAGATGAGCATGATATACCAGAACCCGTAGAAGAAAATTATGC[T/C]GGCTATCATTCAGAAGTTGAGGATGATAGGCACAAATTTGAAGACGAAGA
153
+ RAC875_rep_c105224_352,6B,gatctcctgaagatgatcaaggaggtggcgttccctatgaacatattgct[A/G]TCCCTCGCGCTCTCCATCTTCGTTAGGGGCGACCAGGCCAACTTCGAGAT
154
+ RAC875_rep_c105265_79,4D,TCAACAGAGAACCTTTCAGCAGCTTCGTGGAGCACGAAGTATCCATATTT[A/G]TTTATGCAGTTGGGATTGGCGTGCATCCCATAGAGCTCAGGTGCCATGCC
155
+ RAC875_rep_c105375_810,5D,CCACTTGGATTCGCCAAGAAACTTGGGTTTCTTGCAGGCAGCTCAACACC[A/G]GGTCCTGTTCTTGTTGTTTGCATGGGCACTGACACGTACCGACCAGCCTC
156
+ RAC875_rep_c105380_216,6B,TGTTTTGATCCTTCTCACCGTCCACCGATGATGGCCCGACAGAAATCAGG[A/G]AAGGAGAAAAGGATGTTGTTGTCATGGTCGTCGGAACGACTTGCCGTGGA
157
+ RAC875_rep_c105400_1131,1B,AGAGCTGCTTCAGTTTGTGTTCGCCTATCGCTTTCATTTTGTAGCTGGCC[A/G]TGAATACTGTGAATTTCCTCTCTCTTCCGTTCCACATCTTTCATCAGGAT
158
+ RAC875_rep_c105462_468,4A,TTGTCCAGGACCTTGTCGACCAAGTAGCCTTCACCCTGGTCATCCTTGAT[A/G]CTGAAGATATCAGCAGTGATCTCGACCAAGAAACTGAGGAGCTCGCCCTT
159
+ RAC875_rep_c105487_241,1D,TTATCATCTGCTCCATTGTCAATAGTACTGGCAATGTCTTCACAACATGG[A/G]TCTGTCACATTTTTGTGCAAAGTGGCAGCTTGGACAGCAGAGACAGGAAT
160
+ RAC875_rep_c105500_301,6B,GTCACAAATACCATGAAAAAGGGATCGCTGCTGCAACGTTTCTTCGACGG[T/C]GATGATGAATTCCGCAATAGCAGACTGAAGCTTATACCGGCCGTTCCGAA
161
+ RAC875_rep_c105537_890,5B,ATTGCAAATGAGTGGACATTTGTTCCTGCAGTTCTTAGTTGATGCAGCAA[T/C]GTGCATTGAACAGTGGAGACTAAATTGGTACAGGACAAACCAAGGTAAGT
162
+ RAC875_rep_c105658_115,1B,agaggtgattgaatacgcttaaactcagtctgaggattctgcaagttgaa[T/G]ATCACAATATTGCGATCAGCTGTTCCCACAATCATAAGGGGATAATTCAC
163
+ RAC875_rep_c105697_366,1A,TAATGTGATGACACATCCGAAGTGCGAGATTACTCAAGCATGGGGTGTGC[A/G]CAATGAAGCGCATCCCGGCATCAGTTACCGCATGACACAATATAAGCTCG
164
+ RAC875_rep_c105718_304,4D,GGAGCTGTTGCTGTACTAGGCCTTATTGCTGCATTAGGGTTCTATTGCTA[T/C]AAGAGAAAGCAGAAGCCTTCCGGAAGGGTGCAGAGTCCACATGCTATGGT
165
+ RAC875_rep_c105718_412,4D,CCCCGGCACTCAGGGTCAGATCCTGACATGGTAAAGATCACAGTTGCTGG[T/G]GGAAATGCCAATGGTGGTGCGGCCACGAGCGAGCCATATAGCCAGGCAAG
166
+ RAC875_rep_c105718_585,4D,GTGACCAACAACTTCAGTCAGGAGAACATCCTTGGTCGTGGTGGGTTTGG[T/C]ACTGTCTACAAGGGTGAGCTCCATGATGGTACAAAAATTGCTGTGAAGCG
167
+ RAC875_rep_c105718_672,4D,ATTGCTGTGAAGCGAATGGAGTCTGGTGTTATGGGCAACAAGGGGTTAAA[T/C]GAGTTCAAATCAGAGATTTCTGTGCTGACCAAGGTCCGTCATCGGAACCT
168
+ RAC875_rep_c105803_144,7D,ACTCGTACCGGTGTTTGTTCATGTGGGACACCTTCAAGTTCTTCGTACTC[A/G]GCTGCGTCCAGTTCCCGCAAGTCATTGGGCTCAAAGAACTTTGGGAGTAG
169
+ RAC875_rep_c105881_260,4A,CTCCATTTTTCTTCTGCTCTTTCTTCTGATAAATTATCACAAGAGCCTAT[T/C]GCGTCATCTTGGCCATTAACATCAGAACCATCATTTTCAATTGATTTCCG
170
+ RAC875_rep_c105884_546,5A,TCCATGATAGCAGCAAGCACAAATCGGTTATCCAAACTCCAGACAATCAT[A/G]TTGACACCACGAGGAGTTGGCTGATGTCTTTGTCGTGGACCACCACGAAT
171
+ RAC875_rep_c105919_164,7B,atgcacagggatgaggaggtgaactacttcccttcaaggtttgatcctac[T/C]CGTCATGCTGAACAGTACCCTATCCCTCCTCGCGTTCTATCTGGCTGCCG
172
+ RAC875_rep_c105922_169,4D,GGGCCAGTGAGCCAACACCTGTTTGAGTGGAAAGAACACAATTTGCAGCC[A/G]TTGGAATGGAAGAGGCGACTCAGCATTGCGCTTGATGTTGCAAGAGGTGT
173
+ RAC875_rep_c105927_650,5B,CGAAGTTCACTGACGCTGAACCAGGATCCTCTTCGCCTCTAAGAAAAATT[A/G]TTCCTGCCAGAAGCAGTACCCCAGGGAGTGATCCTCACAAAACAGCCAAA
174
+ RAC875_rep_c105937_467,6B,CAGAGTATCAGTTCTGATGCTCATGTTAGCCATGCTATGGTGGTTCTCCG[T/C]AAGCTCTTTACGGATGCTGCTGTACCAGATCCAGTGGCGTCAGTTGTCAC
175
+ RAC875_rep_c105942_155,1B,AGGCAAAACTTAAAAACGAATGGTTCCAGGAACATAGTTCTATATCCTTG[A/C]AGATAACTGGCTATAGCAAAACGACTCAACGCCTCAGAATCAGGCCTTGG
176
+ RAC875_rep_c106035_443,7B,TCAGTCCAGTCATCCACAATCTTCTGCCACTCGAATCCAGAAGGGTTGAA[A/C]AGGAAGGGTGCAAAGAGCCAGGTGCCCACCATAAACCACATGGAAACAGT
177
+ RAC875_rep_c106039_66,5B,TTCATTCTAGTTTTTCGAATTCCTCTTCAAGCCCCAAAGAATAATGCGGC[A/G]CAGTTACAGAAACAGCAACAAAAGGTGGTCGGGGAAGATGTACAATGTGG
178
+ RAC875_rep_c106093_670,1D,ATGCCATTTCTACTCAGAAGAACCAAGGATGAAGTCTTATCGGATCTTCC[A/G]GAGAAGATTATCCAGGACAGACATTGCAATCTCAGCCACTTACAGCTGAA
179
+ RAC875_rep_c106109_130,7B,ACTGAAGATTATCCTCCTGATACTCCTAAGCCATCAGTTGTGATACGGCC[T/C]CCTGCTGAAGTAGAGAAGGATGTACCTCGTAAGAAGGTCATTATCAAGCA
180
+ RAC875_rep_c106151_123,4A,CCCATTCTCAATGGCGAGTAGAAGCCCATCATGTACAACATAATCATTGG[A/G]TGAAAATTGGTCAGCCACCCTGACTTCTGTGATGTCTTTGAATGCAGAAG
181
+ RAC875_rep_c106158_701,4A,AATGATGAGAGCTCTAATTTTATCAACTCACTAGACACCATGACCACTCC[T/G]CCAAGATACATCATCGGCCTAGAGTTGTCTGGCAAGATGGAAAGGCCCCC
182
+ RAC875_rep_c106170_204,3D,GAAATCTTTTATGTCCCCCAGCGACCATATACAGCTGTCGGAACACTTCG[T/C]GACCAGTTAATCTATCCACTTACAGCAGATCAGGAAACCGAACCACTTAG
183
+ RAC875_rep_c106177_206,4B,ATTTGCATGGTCTATGGTGGCATCAATTGCACCATCTCTTATGGCCTTGG[T/C]TACGATGCACTCCGCATCAGCAACAGGATTCTCAGTGTCTAGCCTTAGCT
184
+ RAC875_rep_c106241_304,5A,ATGATCCTTCCTACTGGAGCTGCCTCATTCAAGGAGGCAATGAAGATGGG[T/C]gttgaagtgtaccacaacttgaagtctgttatcaagaagaagtatgggca
185
+ RAC875_rep_c106322_1091,4B,TGAACTTCCCAAGATCACGAAGTGCTATAGTTTTGAGATATATGGTCTCC[A/G]TTACTAGATTAACAGTATGCAAGGACATTGGTGGATAACTGGAATGTGGA
186
+ RAC875_rep_c106400_276,2B,CCCGATCTTTGCATCGACACGATCACAAAGAACCGAACAGGATTACACGA[A/G]cattccgccctgctgtaaccctttggctttgggaagtgcacgtagggcag
187
+ RAC875_rep_c106488_130,5A,CTTGCGTTAGTCTCATGGCAGGCCACTGCTTCTGATCCTAGCCCACTCCA[A/G]gacttttgtgtcgccgacatgaattcaccagtccgtgtcaatgggtttgt
188
+ RAC875_rep_c106533_93,7A,AATCGCATCCAAGGCGACTGTGGTGCGGTTGACTTAACCATAGCACGTGT[T/C]GATGACGCAGTCATGGCGAATATTGAAGTTGCCGTGTCAGAAGTGCAGAG
189
+ RAC875_rep_c106565_185,3B,CCGACAATGAGCGAGGTCATAGAGATGCTGGAAGGTGGCTTCGATGGCCT[T/G]CAGATGCCTTCCAGGCCATTCTTCTGTGATGATGAGCACACCGCTGTTCC
190
+ RAC875_rep_c106566_197,2B,ctgaccacattcaatgaagttgacatgaccaatttgatgaagctgcggtc[T/G]GACTACAAGGATGAATTTGTCAAGAAGCATGGTGTCAAACTGGGTCTGAT
191
+ RAC875_rep_c106588_205,7D,AYGATTACATGATGGCTGAGGAAGCTCCCTCCATTTCCAGCAGCGATCAG[A/G]TCCGTGATCCAGAGGTAGCAGAACGACCCATGGCTATGGTACGACCTGCT
192
+ RAC875_rep_c106636_232,3A,CTTTAGGCATCGCCCGAGGAACGGAGTACCTGCATCAAGGTTGCAACCAG[T/C]GCATCCTCCACTTTGACATCAAACCGCACAACATCTTGCTGGACTACAAC
193
+ RAC875_rep_c106876_558,1B,ttatgatcagattaagaagatgaacaccttcggctattttctggtactta[T/C]TGCGCCTTGCATAATCTTCGTGATGAATGTGCTTTGGTTCTCCAAGATCC
194
+ RAC875_rep_c106976_263,7A,ATCACCATCTCCCTGCTGTGGGTCGCCATCAACCCGCCGTCGCAGAACTC[A/G]CAGATCGGAGGCTCCTTCCAGTTCCCCTGATCGATGAAGCTAGCTTCCTC
195
+ RAC875_rep_c107031_84,2B,AATTAGGTCTTGCAGCAGGCGCCCCACCTCCAGAATAGGAACTATGAGGT[T/G]GTTGCTGCTGCCACTGTTGGGCTCCTGCATATGGTGCAGGCTGGTAGACC
196
+ RAC875_rep_c107110_137,3B,AAGAGATAATCACCGTGGCCAAGGCGGCCAACGCTCATGAGTTCATATCG[A/G]GCTTGCCACAGGGATACAACACTAACGTTGGTGAGAGAGGAACACAACTA