bio-polymarker 1.3.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (177) hide show
  1. checksums.yaml +7 -0
  2. data/.travis.yml +24 -0
  3. data/Gemfile +23 -0
  4. data/README.md +205 -0
  5. data/Rakefile +61 -0
  6. data/SECURITY.md +16 -0
  7. data/VERSION +1 -0
  8. data/bin/bfr.rb +128 -0
  9. data/bin/blast_triads.rb +166 -0
  10. data/bin/blast_triads_promoters.rb +192 -0
  11. data/bin/count_variations.rb +36 -0
  12. data/bin/filter_blat_by_target_coverage.rb +69 -0
  13. data/bin/filter_exonerate_by_identity.rb +38 -0
  14. data/bin/find_best_blat_hit.rb +33 -0
  15. data/bin/find_best_exonerate.rb +17 -0
  16. data/bin/get_longest_hsp_blastx_triads.rb +66 -0
  17. data/bin/hexaploid_primers.rb +168 -0
  18. data/bin/homokaryot_primers.rb +183 -0
  19. data/bin/mafft_triads.rb +120 -0
  20. data/bin/mafft_triads_promoters.rb +403 -0
  21. data/bin/map_markers_to_contigs.rb +66 -0
  22. data/bin/marker_to_vcf.rb +241 -0
  23. data/bin/markers_in_region.rb +42 -0
  24. data/bin/mask_triads.rb +169 -0
  25. data/bin/polymarker.rb +410 -0
  26. data/bin/polymarker_capillary.rb +443 -0
  27. data/bin/polymarker_deletions.rb +350 -0
  28. data/bin/snp_position_to_polymarker.rb +101 -0
  29. data/bin/snps_between_bams.rb +107 -0
  30. data/bin/tag_stats.rb +75 -0
  31. data/bin/vcfLineToTable.rb +56 -0
  32. data/bin/vcfToPolyMarker.rb +82 -0
  33. data/bio-polymarker.gemspec +227 -0
  34. data/conf/defaults.rb +1 -0
  35. data/conf/primer3_config/dangle.dh +128 -0
  36. data/conf/primer3_config/dangle.ds +128 -0
  37. data/conf/primer3_config/interpretations/dangle_i.dh +131 -0
  38. data/conf/primer3_config/interpretations/dangle_i.ds +131 -0
  39. data/conf/primer3_config/interpretations/loops_i.dh +34 -0
  40. data/conf/primer3_config/interpretations/loops_i.ds +31 -0
  41. data/conf/primer3_config/interpretations/stack_i.dh +257 -0
  42. data/conf/primer3_config/interpretations/stack_i.ds +256 -0
  43. data/conf/primer3_config/interpretations/stackmm_i_mm.dh +257 -0
  44. data/conf/primer3_config/interpretations/stackmm_i_mm.ds +256 -0
  45. data/conf/primer3_config/interpretations/tetraloop_i.dh +79 -0
  46. data/conf/primer3_config/interpretations/tetraloop_i.ds +81 -0
  47. data/conf/primer3_config/interpretations/triloop_i.dh +21 -0
  48. data/conf/primer3_config/interpretations/triloop_i.ds +18 -0
  49. data/conf/primer3_config/interpretations/tstack2_i.dh +256 -0
  50. data/conf/primer3_config/interpretations/tstack2_i.ds +256 -0
  51. data/conf/primer3_config/interpretations/tstack_i.dh +256 -0
  52. data/conf/primer3_config/interpretations/tstack_i.ds +256 -0
  53. data/conf/primer3_config/interpretations/tstack_tm_inf_i.dh +256 -0
  54. data/conf/primer3_config/interpretations/tstack_tm_inf_i.ds +256 -0
  55. data/conf/primer3_config/loops.dh +30 -0
  56. data/conf/primer3_config/loops.ds +30 -0
  57. data/conf/primer3_config/stack.dh +256 -0
  58. data/conf/primer3_config/stack.ds +256 -0
  59. data/conf/primer3_config/stackmm.dh +256 -0
  60. data/conf/primer3_config/stackmm.ds +256 -0
  61. data/conf/primer3_config/tetraloop.dh +77 -0
  62. data/conf/primer3_config/tetraloop.ds +77 -0
  63. data/conf/primer3_config/triloop.dh +16 -0
  64. data/conf/primer3_config/triloop.ds +16 -0
  65. data/conf/primer3_config/tstack.dh +256 -0
  66. data/conf/primer3_config/tstack2.dh +256 -0
  67. data/conf/primer3_config/tstack2.ds +256 -0
  68. data/conf/primer3_config/tstack_tm_inf.ds +256 -0
  69. data/lib/bio/BFRTools.rb +465 -0
  70. data/lib/bio/BIOExtensions.rb +153 -0
  71. data/lib/bio/PolyploidTools/ChromosomeArm.rb +63 -0
  72. data/lib/bio/PolyploidTools/ExonContainer.rb +245 -0
  73. data/lib/bio/PolyploidTools/Marker.rb +175 -0
  74. data/lib/bio/PolyploidTools/Mask.rb +116 -0
  75. data/lib/bio/PolyploidTools/NoSNPSequence.rb +292 -0
  76. data/lib/bio/PolyploidTools/PrimerRegion.rb +30 -0
  77. data/lib/bio/PolyploidTools/SNP.rb +804 -0
  78. data/lib/bio/PolyploidTools/SNPMutant.rb +86 -0
  79. data/lib/bio/PolyploidTools/SNPSequence.rb +55 -0
  80. data/lib/bio/db/blast.rb +114 -0
  81. data/lib/bio/db/exonerate.rb +333 -0
  82. data/lib/bio/db/primer3.rb +820 -0
  83. data/lib/bio-polymarker.rb +28 -0
  84. data/test/data/7B_amplicon_test.fa +12 -0
  85. data/test/data/7B_amplicon_test.fa.fai +1 -0
  86. data/test/data/7B_amplicon_test_reference.fa +110 -0
  87. data/test/data/7B_amplicon_test_reference.fa.fai +3 -0
  88. data/test/data/7B_marker_test.txt +1 -0
  89. data/test/data/BS00068396_51.fa +2 -0
  90. data/test/data/BS00068396_51_blast.tab +4 -0
  91. data/test/data/BS00068396_51_contigs.aln +1412 -0
  92. data/test/data/BS00068396_51_contigs.dnd +7 -0
  93. data/test/data/BS00068396_51_contigs.fa +8 -0
  94. data/test/data/BS00068396_51_contigs.fa.fai +4 -0
  95. data/test/data/BS00068396_51_contigs.fa.nhr +0 -0
  96. data/test/data/BS00068396_51_contigs.fa.nin +0 -0
  97. data/test/data/BS00068396_51_contigs.fa.nsq +0 -0
  98. data/test/data/BS00068396_51_contigs.nhr +0 -0
  99. data/test/data/BS00068396_51_contigs.nin +0 -0
  100. data/test/data/BS00068396_51_contigs.nsq +0 -0
  101. data/test/data/BS00068396_51_exonerate.tab +6 -0
  102. data/test/data/BS00068396_51_for_polymarker.txt +1 -0
  103. data/test/data/BS00068396_51_genes.txt +14 -0
  104. data/test/data/IWGSC_CSS_1AL_scaff_1455974.fa +112 -0
  105. data/test/data/IWGSC_CSS_1AL_scaff_1455974_aln_contigs.fa +2304 -0
  106. data/test/data/IWGSC_CSS_1AL_scaff_1455974_aln_contigs.fa.fai +11 -0
  107. data/test/data/LIB1716.bam +0 -0
  108. data/test/data/LIB1716.bam.bai +0 -0
  109. data/test/data/LIB1719.bam +0 -0
  110. data/test/data/LIB1719.bam.bai +0 -0
  111. data/test/data/LIB1721.bam +0 -0
  112. data/test/data/LIB1721.bam.bai +0 -0
  113. data/test/data/LIB1722.bam +0 -0
  114. data/test/data/LIB1722.bam.bai +0 -0
  115. data/test/data/PST130_7067.csv +1 -0
  116. data/test/data/PST130_7067.fa +2 -0
  117. data/test/data/PST130_7067.fa.fai +1 -0
  118. data/test/data/PST130_7067.fa.ndb +0 -0
  119. data/test/data/PST130_7067.fa.nhr +0 -0
  120. data/test/data/PST130_7067.fa.nin +0 -0
  121. data/test/data/PST130_7067.fa.not +0 -0
  122. data/test/data/PST130_7067.fa.nsq +0 -0
  123. data/test/data/PST130_7067.fa.ntf +0 -0
  124. data/test/data/PST130_7067.fa.nto +0 -0
  125. data/test/data/PST130_reverse_primer.csv +1 -0
  126. data/test/data/S22380157.fa +16 -0
  127. data/test/data/S22380157.fa.fai +1 -0
  128. data/test/data/S22380157.vcf +67 -0
  129. data/test/data/S58861868/LIB1716.bam +0 -0
  130. data/test/data/S58861868/LIB1716.sam +651 -0
  131. data/test/data/S58861868/LIB1719.bam +0 -0
  132. data/test/data/S58861868/LIB1719.sam +805 -0
  133. data/test/data/S58861868/LIB1721.bam +0 -0
  134. data/test/data/S58861868/LIB1721.sam +1790 -0
  135. data/test/data/S58861868/LIB1722.bam +0 -0
  136. data/test/data/S58861868/LIB1722.sam +1271 -0
  137. data/test/data/S58861868/S58861868.fa +16 -0
  138. data/test/data/S58861868/S58861868.fa.fai +1 -0
  139. data/test/data/S58861868/S58861868.vcf +76 -0
  140. data/test/data/S58861868/header.txt +9 -0
  141. data/test/data/S58861868/merged.bam +0 -0
  142. data/test/data/S58861868/merged_reheader.bam +0 -0
  143. data/test/data/S58861868/merged_reheader.bam.bai +0 -0
  144. data/test/data/Test3Aspecific.csv +2 -0
  145. data/test/data/Test3Aspecific_contigs.fa +6 -0
  146. data/test/data/bfr_out_test.csv +5 -0
  147. data/test/data/chr1A_C1145499T/chr1A_C1145499T.csv +1 -0
  148. data/test/data/chr1A_G540414846C/chr1A_G540414846C.csv +1 -0
  149. data/test/data/chr1A_G540414846C/chr1A_G540414846C.fa +2 -0
  150. data/test/data/chr1A_T517634750C/chr1A_T517634750C.csv +1 -0
  151. data/test/data/chr2D_C112180134A/chr2D_C112180134A.csv +1 -0
  152. data/test/data/chr4D_C14473543T/chr4D_C14473543T.csv +1 -0
  153. data/test/data/chr4D_C14473543T/chr4D_C14473543T.fa +2 -0
  154. data/test/data/headerMergeed.txt +9 -0
  155. data/test/data/headerS2238015 +1 -0
  156. data/test/data/mergedLibs.bam +0 -0
  157. data/test/data/mergedLibsReheader.bam +0 -0
  158. data/test/data/mergedLibsSorted.bam +0 -0
  159. data/test/data/mergedLibsSorted.bam.bai +0 -0
  160. data/test/data/patological_cases5D.csv +1 -0
  161. data/test/data/primer_3_input_header_test +5 -0
  162. data/test/data/short_primer_design_test.csv +10 -0
  163. data/test/data/some_tests/some_tests.csv +201 -0
  164. data/test/data/test_from_mutant.csv +3 -0
  165. data/test/data/test_iselect.csv +196 -0
  166. data/test/data/test_iselect_reference.fa +1868 -0
  167. data/test/data/test_iselect_reference.fa.fai +934 -0
  168. data/test/data/test_primer3_error.csv +4 -0
  169. data/test/data/test_primer3_error_contigs.fa +10 -0
  170. data/test/test_bfr.rb +135 -0
  171. data/test/test_blast.rb +47 -0
  172. data/test/test_exon_container.rb +17 -0
  173. data/test/test_exonearate.rb +48 -0
  174. data/test/test_integration.rb +76 -0
  175. data/test/test_snp_parsing.rb +121 -0
  176. data/test/test_wrong_selection.sh +5 -0
  177. metadata +356 -0
@@ -0,0 +1,196 @@
1
+ RAC875_c8174_1034,3A,CTGATGACTTCTCCGCCTGTGTATCCTTTGGTAAGTATCAACTTTCCACC[A/G]TACCATATGGCTAAGCCATAGCTAGAGAAGAATATGAAGAAAACAGAACC
2
+ RAC875_c8183_201,1B,GTCAACCAGTCTCTACATCTTTGAAGAAGAAGAAGAAGAGAAATGCTCCA[T/C]TGACATGGCCCACTGGAGATCATTTCCTGGCTACTCCTTTGTTCCCAGCC
3
+ RAC875_c8197_810,2B,cggtccaaccagaattttgctgcaaatgtgactgtattgtgctgttgctg[T/C]TGGCCAGCTGAATGAGCTTGTTGGCTATGCGTGTAATATGACCAACAAAT
4
+ RAC875_c82073_306,5D,ACTGCCAACTGCCTTTTCGTTCATATGTTCGTGAGTGACACGATGGATCT[A/G]TGCTTGGAGGGGTGGACCAATGTATATGTCGCGCAAGAGACCAACTGATC
5
+ RAC875_c8221_649,7B,CGTACAATTTACCTGCAGAGGTTGAGAATGTCCTTTCTAGCTGCTTTGAG[T/C]ACGACTTTCGGGATCGCCCCTTGATGTCAGATATCTTACAAGCATTTGAA
6
+ RAC875_c8221_711,7B,gatcgccccttgatgtcagatatcttacaagcatttgaaagtgctaaaga[T/C]GTGGATTATGACAACAATGGCTGGGATAGTTCTGAAAACCCAAGGGCAGT
7
+ RAC875_c8234_293,4D,GGCTGTGGTCGGCGCGGACGCCTCGGGCCTCCTGTGCTCCCCTACACAGA[T/C]GAGATGAGCGGAAGAGGCTAGTCGTTAGAGCTCCCCTATATTCTTTCTAG
8
+ RAC875_c8254_1203,6B,ttcatattgctggtgatgaaggctgtgtcggttgggaggcggaaattcag[T/C]GCCGAGTTCCAGCTCGTGTTCCGGCTGCTCAAGGGGCTCATCTTCATCGT
9
+ RAC875_c8254_594,6B,TTTGTGCTCATGCAGCTTCAGTTAGCGTCCGTCTTCTTCACATTCTCCCT[T/C]GGAACCAAGACTCACTACTACGGAAAGACGCTGCTCCACGGAGGAGCCGA
10
+ RAC875_c8254_657,6B,CACTACTACGGAAAGACGCTGCTCCACGGAGGAGCCGAGTACAGAGCCAC[T/C]ggacgtggattcgtggtgttccatgccaaattcgctgagaactaccgcct
11
+ RAC875_c8254_795,6B,ATGATCCTGCTTATCGTGTTTGAGATCTTCGGGCAGTCGTACCGAGGAGC[T/C]ATCGCGTACATCTTCATCACCTTCTCCATGTGGTTCATGGTTGTCACCTG
12
+ RAC875_c8256_464,3B,AAAAAGGTGAGTGCTCCAAGACTGAAGCCAGCACCACAGGCCAAGGCCTC[A/G]TCCCTGCGCCTCTTCCTGTGTTTCTCTACAATCTTGTCCAGTGCCCGGCG
13
+ RAC875_c82649_146,1B,ATTGGGGCTCAATGCGTCAGAGTTGCGTCGGTCTTGGATGCCATTTACCA[A/G]GCTCTGTTTGCTCTTATTCTGAACTGAACCTGTGGATTCCTCTCCTCCTC
14
+ RAC875_c8271_1352,1B,TGGCCAATCCTACCATGCTGACTATTGGATTTAACATTAATCTTAACCTG[T/C]GATATCCTGCCTCTAGGATCAGATCCAGAATGTGCACCATTTATCTGCTG
15
+ RAC875_c8271_1469,1B,GACTTAACCTTCACACCATGACCAACTTGAGGCTTCCTGCTCCTGTAATC[A/G]CCTTCAGGCTGCCCTCTCTGCCAGTCACTTAAGAGATCAGCATGGCTACC
16
+ RAC875_c8271_887,1B,CTGGCCAGCCTATCACTCTCTGGTGACCTCAGTGATTCATTGGCTTTCTC[A/G]TTGCTATCATGCAATTCAGAGTTGTCATAACCATGCATGTCCAGGTTTGC
17
+ RAC875_c8282_644,1B,TCGAAGGAAGACTTCCAACGGTGTGCAAATGCTCAGATGGCTGTGTATCG[A/G]AAAGCCACATTTGGATGGGCTTACTGGTCGTACAAGCATGTTAGCAACCA
18
+ RAC875_c8286_432,2D,CCGACAGCTGCCCTGATGTCTGCCATTTACGAGGAGAACAAGGACGAGGA[T/C]GGCTTCCTCTACATGACCTACAGCGGCGAGAACACCTTCGGATTGCTCTA
19
+ RAC875_c8286_574,2A,GTAAATAAGGCGTGCCAATCAACTGTGTATATATTCCGGTTTGCCTCGTC[A/G]TAGGATCTTTAAATTGCACAACCAAGAAAACCTATTCTTATCCTGACTTA
20
+ RAC875_c82888_83,1D,TCCCGATGGGCGTGTTTGGCTCCGTGGCCCCGGTGCTCACCCTGGGATCC[A/G]TCTCCAAGAGATGGGTGGTGCCTGGATGGCGGCTTGGATGGATCGTGACC
21
+ RAC875_c829_1971,2B,CCTGACGTTGAAGGACAAAGACGGTGAATATATGACGAAAGAGGTGCAGC[A/G]CGAGGTGGAGACATCAGTGAAGAGGAGGACCGATGGCAAGGCGCCCAAGA
22
+ RAC875_c83182_90,3D,GGCTATGGAGCTTACGGGCCACCTCCTGGGATGGGCGTGCAAGGCATGTA[T/C]GACGGCGGCTACAATACCTACACAGACAGGCGCTAYRGTACGGGTGCTGG
23
+ RAC875_c83211_30,5A,GACGTGCACCGGTTCAGCTACATATCGCG[A/G]AAGGGCCTCGAGACCTTCCGAGAGCGGCTGAAACATGGTGTCATTGATCT
24
+ RAC875_c83414_707,6B,TTCAGCGGCGACACGGACTCGGTTGTCCCGGTGACAGCGACGAGGTTTTC[A/G]CTCAGCCACCTTGGTCTCAAGACTAAGATCCGCTGGTACCCATGGTACTC
25
+ RAC875_c83712_84,2B,GCATCTACTTGGAGGTGCCAGGTTTCGTTGGCCCCGTGGAACTGGAACGC[A/G]TCCCGGACGGCCATGGAGTCGGCGAGGTGGAACCACGAGCCTCCCTGGTC
26
+ RAC875_c84224_177,7D,TCCATGGGTGGAAGCCACAAGTTACATGCCATGATCCAACTGATATATCT[A/G]AGGATAATGGCATGGCATGGGCAATTGATATCCCATGCATCCCTCAGACC
27
+ RAC875_c8452_1646,5D,CGGATTGATGCCATTGATGGGGCATTGCGTAGACCTGGCCGTTTTGATCG[T/C]GAGTTCTATTTTCCTTTACCTGGCTATGAGGCACGAGCTGAAATACTGGA
28
+ RAC875_c84527_446,7A,ACGGGAGAAAAAACTTATGACATGCCCATCCACTACCTATCTTACATCGA[T/C]CATAACTTACATGAAAACAAACGTTGCCCACTATGAACACCACAACATCC
29
+ RAC875_c8459_1233,3B,AGGAAGAACTACCCTGCTGGCACTCCTAGGACAAGTCCTAGGTTTGAACC[A/G]AAGCGTGAATGTCATAACGGGTCTGTGGAAGAAATGCCAGCCAAGGTTCT
30
+ RAC875_c8459_1291,3B,AATGTCATAACGGGTCTGTGGAAGAAATGCCAGCCAAGGTTCTGACCTCT[A/G]AAGGTGGTGATGCTGAGCTGGTGAGAGGGGAAGTGAAACATTCTAGGAAG
31
+ RAC875_c8472_1174,4A,ATTGTACTGGAACAGTGAAGATGCTGACAATATCATTGGAGCATCGAGGC[A/G]TGATCAGTTGGATTGGTTTACTCTGGACCCAAGGGTGGCACAAGATCAGC
32
+ RAC875_c8481_2685,6A,caacggacctgcaccaatttagttgcttgagttgctccacattaactaga[T/G]CTCCCATATATTTGGTGCTTGGTTTAGTGTTTGATGTCGGGCAGAGGAAT
33
+ RAC875_c8503_644,1D,TTTCCAGTATCGACATGACCAAGGATGCAACAGATTGGTGAACGGAGGTC[A/G]CTAGCATTGTCAGCATCATCATCTTTAGAAGATCCTTTCTTCCCTTTCTT
34
+ RAC875_c85031_525,1A,CCTGCGCCCACCAGCAGGAACTGTGGAATCAGCATGAACACGCTGATCGG[T/C]AGCGCGGTCCCATTCGTGGCCGTGGAGGCGACGGTGAGACGCTTCTTCTC
35
+ RAC875_c85261_84,2B,gagcgcatctcaggaagtgctggtgatgtgctagaagacaatcctgtggg[A/G]AAGTTAAAGGTTTTCATATATGACTTGCCAAGAAAGTATAACAAGAAGAT
36
+ RAC875_c85778_184,1A,GTGCTACCGTGGGCGTCTTCGCCAACATCTCACGCCGGTGAACGTGTCCT[A/G]CCGGTGGTTCCTCCTGCCGTCATAACGTAAACCAGCAAAGCATGTGCGCA
37
+ RAC875_c85927_269,2B,GCAAAACGTGCCATGAATGTATATGATGAAGCTGTAAGGGCTGTTCCCAA[T/C]ACTGAAAAGATGAGTATGTATGAAATATACATTGCACGTGCTGCTGAACT
38
+ RAC875_c8624_539,6A,AACCAGTCACCCTAATGTGCATAGAAAAGATTGAAGGGTGATGCCACAAG[A/G]accgatgaggaaatcaaactgagggtatctacggttatcctattgagatc
39
+ RAC875_c8624_825,5B,CACAGGGAATGACAGGATGACCACCATCACAACCAACTGGACAGAGTTCC[A/G]CTGTCATGCAAACATGCATGAGGGTGACATCTGCGTCTTCTACTTCAGAC
40
+ RAC875_c86296_278,6B,CAGACAAAGCTAAGCTTCCTAGCATCAACTAGTGTCACTGATAGCTCTCC[A/G]ACAAAGTCCTTGTTTCCATCTTGAACATCTTGAACTAAGTCACTTGCAAC
41
+ RAC875_c864_88,1B,CTCAGGAATTGGCTTAAAGAGATTGGAGCTTGATATATTTGATGATGACC[A/G]TACCTTGCCTTATATCGACAGTTGGCTCCAGTTTGCTGTCACACCAGGGA
42
+ RAC875_c8642_231,5A,TGGCAATGTCGACGAGGCGAAGATGATGCTCCAGAGGCTGCGTGGCACGA[T/C]GGGGGTTCAGAAAGAGCTCGACGATCTGGTCACTGCCAGCAACATATCCA
43
+ RAC875_c86537_84,7D,GGAAGGACGAACAGAGTTCTACCGGTGATCCGTGTTGTCGCTGACGGTGT[A/C]ATAGGATCTGCGGTGCACGTGGACAAGGCGATGGGGCTGCCAACCTACCT
44
+ RAC875_c8662_140,3D,AGGGAAGCACCGCATAAGTCGCCAGTACTATGAGGAACCACGAGGATTTC[A/G]TGATGGTCCTCCTCCTCGACTTGCACGAGAAAGGTCTATCTCACCACGTT
45
+ RAC875_c8662_762,1B,gctgagattgagaagagaaagccacctagtttcagcggccatggagctta[T/C]GGACCACCTATGACAACTCTTGGGATGGGCTTGCAAGACATCTACAACAG
46
+ RAC875_c8662_917,1B,CTATCCGCACCCATGATTTGGGCTTTTGATCCTTGTCAGAGTTCATCACC[A/G]TCAGTACTTGTGACAAAGTTCCTATCTTAGCAGTGAAACTTGTGGTGACT
47
+ RAC875_c8684_1668,2D,TTCTCCTCCAGGGACAGAATCTGGCCCTTCAGCTTCAAGATGGTGACCGC[A/G]CTGTCGTACCGGAACTGCTGAGCCTGGTAGAACAGCACGGCCATGTCC
48
+ RAC875_c87052_193,2B,CACCGATGTTCACAATGAATGCTCCGGGTGTGGGCGTGACATCTACCCAA[T/C]GGTCCTCGTTGAAGATCTGTAGTCCGCCGACTTCATCTTGGAGGAGTACG
49
+ RAC875_c871_1345,7B,CCAGATCAAGTGATCTGATCATCTCCTGCGGACAGAATCGCCCTACGCTC[A/G]GTGTAAGTTCCCGGCCGTGCACGAACCTGTGACCGCTAGAGCAGTGGCAT
50
+ RAC875_c8714_653,4A,GAAAGTGAACATTGAAACCATTTTTGGAGTGCCATGGATTTGCTTTCAGA[T/C]GATGACAAAAAGCTTCCCCAGGTTTCAAATATGCTTCCCTTATTGAAACG
51
+ RAC875_c8721_212,6A,AGACCTGATTATTGCCTGGGGCCTCATTTGCGGCAAATGCTATCTTATGG[A/C]TGTACCCGCTTAGAAATTGGTGTTCAGAGTACATATGAGGATGTTGCACG
52
+ RAC875_c8751_378,6B,CAGGAGATGTCCCTCATGGCCAGCCTCAGCAACCCCTACATCGTCGAGTA[T/C]aaggacggatgggtcgacgaggggacctccgtttgcatcgtcacaagtta
53
+ RAC875_c8752_1079,7B,AAAACAATCAAATTGCCAAATATCAGGAGACCCAAAGAATCTGGAGCTCA[A/G]cctgcatgatcttcatcccgcctcttggtactgcgttgcgtggtatccca
54
+ RAC875_c8752_705,7B,TGTTATGGCTTGGAAGTGAAGGCACAGGATCTCCGTAGATCGAAAGGCTT[A/C]TGGAATAGTCGTTATCAGTTTAATGCCTACTTTGTGCCATATCTATCTGC
55
+ RAC875_c8754_346,7D,ATGAGACTCGACCTTGTTTTACCTTAATTATCATGGTGTGCCTTTTTTTA[T/G]AATAGCTCACCATTTTGTTAGTGGCAATAAAATGCATCTTTAGGCACACC
56
+ RAC875_c8784_503,7A,GCTGCTCATCTGTGGAGGAACCGTGGAAAGTGCCCTCTAACACCAAGTGA[A/G]ACAGCATTTATCCTCCAAGCACTAGGTATTCCTACAGAGACAAACATTTA
57
+ RAC875_c87890_234,1B,agtcgctccaggcatggggcgtccaccacagcgatttcctcaaagaagga[T/C]AGGATGATCTTCACGCACCGGATGCTTTGGCTGACAAGGCGAAGGCCAAG
58
+ RAC875_c8878_232,1B,AATTACTATTACATTCATGACCTGATGCATGACCTGGCAGAGAGTGTCTC[A/G]CGAGTTGACTGTGCAAGAGTTGAGAGTGCTGAGGAGAAGCAGATACCTCG
59
+ RAC875_c8888_802,1B,TGGGACAGCATAACCATTGCATACTTGTCAATTTTCTGCAGCTGCTGTGT[T/G]TTCGGGTGGAACGTGCAGAGGCTTGGATTCGGCAACATGTACGTCCACAT
60
+ RAC875_c8898_382,5B,TGCGGCAGGCACCTCGACCACGGTGTCCTTCTCGTCGGCTACGGGGCGTC[T/C]GGCTTCGCGCCTTCCCGCTTCAAGGAGAAGCCCTACTGGATCATCAAGAA
61
+ RAC875_c8907_453,6B,TGTCAAACCAGCCCAAACTCCGGCCAGGCCAAACACACGTGGAGCATATA[A/G]caagaccaacgatgatatcaccccaaccacaatcgtagcttgagcgacat
62
+ RAC875_c89201_221,5A,TCTTCAGAAGGGATAATAGATGACAGTGAAAGGAAAAGGAACAAACCAGA[T/C]GAAATTTGAAGTCACCTAGACCGAGCCAAGCACATCTTTTTGTACATGTA
63
+ RAC875_c8927_1434,5B,GGTTGGGCAGACATTGAGGAGGAGGGAGTCTGGAAGGGGGAGGGAGGAAA[T/G]CAGGTCAGGAGACATAAACGCCGGCAGCCCCTTGCGTGTGGACAAAAGCA
64
+ RAC875_c89312_129,7B,ATGACATTCTCCACATACCACTTGTATGTCTCGACAAGCCCCTCCTTGAG[A/G]GGAACCTTGGGCTTCCACCCCATCCCATGTATCTTGGAGCTATCCATGAG
65
+ RAC875_c89312_61,7B,TCATATCAAGATACAAACTTTAAGAGGCAAAGGAGAACATGATACCACCC[T/C]GTTACTTCTTGTCGGCGATGACATTCTCCACATACCACTTGTATGTCTCG
66
+ RAC875_c89709_124,5A,tctcaaaggcatgcaactccgagaatcggtggaaatggcagccatcgatg[A/C]GGACGACGATCCAGTTGGAGGCCGGGAGGTGGCGGTGGAACTCGAACTCC
67
+ RAC875_c899_1326,5B,TGACCAAGTAGGAGTGGGAGTCAAAATGGCGAGGGTATTGGAGAACGATG[A/C]TGTCAACTCAGCTAATGAATCAGGGAATATGATGGCATGCTTATTACCTC
68
+ RAC875_c89978_107,3D,ATGGCCGTGTGGAATGCGGCGTGGAGAGCGTCGAGGCGGTGCTTGAGCAC[A/G]TTGGGGAACCGGAGGATCATCGGAAACTGGATGTCCTTCCTCTTCTGCTT
69
+ RAC875_c89978_152,3D,AGCACGTTGGGGAACCGGAGGATCATCGGAAACTGGATGTCCTTCCTCTT[T/C]TGCTTTGCAGCTTGAATGACGTGCAGCACGTCCATCTCCTGCCCTGCCTT
70
+ RAC875_c90425_234,4B,TGCCCGACTCCGGTTACAGCTGAATGACTGCTTGTTTATCTGCTTTGAAA[A/C]CCTCGACTCATATGTGGTGTCCCTTTTTACCGCAAAACCCACACGCCGGG
71
+ RAC875_c90426_136,2D,atggctcatcatgcgacggacgtccatcagtggctctccgccacgggtgc[A/G]CTCCTGGATGAAGACACTTCGCTATGGCTGTCGCCGGGAGATAACCCGGC
72
+ RAC875_c90426_151,2D,acggacgtccatcagtggctctccgccacgggtgcgctcctggatgaaga[T/C]ACTTCGCTATGGCTGTCGCCGGGAGATAACCCGGCTGATGGTGGATTGCT
73
+ RAC875_c90431_188,1B,ATGAGGACGACGAACTCCTGGAACTGGATACCCTTGCGGCTGTCGACGTC[A/G]CAGTAGCGGTGCACGTCGTCGGCCTCCTTCTCCGACATCCGCACCTCGAG
74
+ RAC875_c90431_275,1B,ATCCGCACCTCGAGCTTGCTCAGGCAGCTCCGCAGCTCCTCGTTGTCGAT[A/C]gtcccgttggagtccgtgtcgtagtggtcgaagacgtcccggatgtcctt
75
+ RAC875_c906_657,7B,GTAGTAGTACTACAACCACCCTCACTACGTGAGCATCTCCACAACGAGTG[T/C]GTGCGTGCTTCACTTGTGTCCTGCTAGCTTCAGTTAGCTGCAGTATAGAT
76
+ RAC875_c90778_632,4D,ATGACACCGGCAATGCGTCGTGGTCCAGCTGGTCCAAGGACTTTGTGCAA[T/C]GCTTGTGGACTGATGTGGGCCAACAAGGTACAATCTCATCCTTAACATGC
77
+ RAC875_c9122_395,2B,CTTACTATAGCTAAGAACTGCCCAAATTTCACGCGATTCAGACTCTGTAT[T/C]CTTGAGCCTGGGAAGCCTGATGCCATGACAAACCAACCATTAGATGAAGG
78
+ RAC875_c9130_154,5A,CCAAGGAGCTACTACAAATGTACTCACCAGGGCTGTTCGGTGCGCAAGCA[T/C]GTGGAGAGAGCGTCGCACGATCTGAAATCCGTGATCACGACGTACGAGGG
79
+ RAC875_c9140_470,3D,GGCGGTGGTAATGTGTTCCAACTTGGACGGCGTTGCCCCCATTCTGGTGT[A/G]CGGAGCTAGAGATGTGTAGTGCTATGGATGAAAGTCATGTGCAGCTTAGG
80
+ RAC875_c91464_170,5A,CTGCTGATTTAATATGTTCTTTCTTAACAACCCCATCGCCTATTGACACA[T/C]GACCATGAGGAATGCCACCTGATGCTTCATACAACAGCTCACCGTCCAAC
81
+ RAC875_c91986_410,5B,ctatgcccggctgaatcacttaatttcacagagaacttgtatccatcagg[T/C]GGGGCAGCAGCATTCGTCAGAATCTCCGCAGGAGCATCAACAACTATCTG
82
+ RAC875_c92239_415,6B,AGGTTGAGATGAACAACAGCAAGAAGGAAGAAGAGATTCAGATTGGTGGC[A/G]TGAGGTGCAGCAAGGGACTCGTGGTAGTTATGGTGGATGGGTCGCGGTGC
83
+ RAC875_c92348_127,6B,ACATCCTTTCTTGCTCACCCAACACACGGCATTCCTGTAAGCCTCATACT[A/G]TCGAGTTGTTTGACGAGATGTGCATCAATAATTTCAGTTAATCCGTGTGC
84
+ RAC875_c92464_53,1B,GTATAATGTACGCACATGATCAATCTATGTCCATATCGTCAACATTATAA[A/G]CATTAGTGGACCGTATATGCATTTGCATGACTGAGCCATCTCAGCTAAGC
85
+ RAC875_c9309_145,7A,GGCAGGGCAAAGCAATTACCAAATGATTAACCACATGTCACCAATAGGCC[A/G]tataaagttgttcagtgaggaggactacaagattggcaccagcaacaacc
86
+ RAC875_c93097_105,5B,GGTTGGTTGAGAGGTGATGGTTGTATATCTCCAGATGTTGTTAAGATGTT[T/C]GGGCTTGCGGTTTCACTGGCTTCTATGCTGTCATCTCTAGGTGATCTAGT
87
+ RAC875_c9318_401,4A,AGAAACTCCCTGAATGACTCTGGTAACTTCTTATCAGAAGTGGATTCCTC[A/G]TTGTTAACTTGATCAAAAATCCTATACAGGTCTTGCACCAGTCTCGTAGA
88
+ RAC875_c9386_358,1A,TTTGTTGTATAGAATTCTTGGCTTCGGTTAAAGATCATTCTGATCTTGAG[T/C]GCCTATAGACATGCTGTTGTACATAGTATATACTACCGATCGCTTCTGTA
89
+ RAC875_c9412_75,6B,TCCTTGAACATTGATGATCTTGCACTATCAGCTTGACTGCGGAGCAAGTC[A/C]tgtgcctccttgctggacttcaatgcactttccagctctatctgaagccg
90
+ RAC875_c94439_63,3D,GCTTACAGCTACGGGCTGGAGGCAGGCTCCAAGCCGGAGTTGCTCATCGC[A/G]ATGAGCTGCCTCACAAAGGAGGCTAATTCCAGAGCCTTCCTGGTTTGCAA
91
+ RAC875_c94519_419,4B,ctctgttrgagytggcacctgcgcctgccgccgccatgctgattcttctg[A/C]GGCCTTTGCTTAATAGCTACTTTGGTGGCCACAGCGCTGCTCTCTTCTTG
92
+ RAC875_c9457_457,1B,GGAGTCAATGTAAGTCGTCCCCGCAGCTCCAAAGAAGCCGATGATCCGGG[T/C]GGAAACTAGCGGGACGTTGAAAGAACCCCCAGAGCCGGCAGTGCCGCCAT
93
+ RAC875_c9457_788,1B,ACTAGTGCGAAAGGAGTGTATTCGATGTCGCGAGGTTCGCCTCCATCGCC[A/G]ccccatggcccgatcttcacaggcttgctcatcttgaacctagctagcaa
94
+ RAC875_c947_383,3A,GRCATAGATATGATTCCGACGAGGATAATGTTGATCAGCTGCTTGAACTG[A/G]GAACTTTCACTGGGAAGAGGGCTATTGAATCACAATGTGGAAGCTGGTAC
95
+ RAC875_c9476_916,5D,TGGATACAGGCTGGCTCAATGCACACGGGTTGTACACAATAAGCTTGATT[A/G]CCCTTTTGGTTAGGATCTACACCAGGGTTGGAAGATTTAAGAAGTGTAGG
96
+ RAC875_c9494_651,7B,GTAACTTCTCTGGAGCGAATCCTTCCAAAGCGCTGCCGACAACATCGTCC[A/C]TGTGGCGCTGCTCCTTCCTTTTCGTGCCTTTTGCTTCATTGACCTCCTTC
97
+ RAC875_c9500_1796,2B,TTGCCCATGACACAGCTAGATTCTGTCACCTCAATCTTTGTAATCTCATC[A/G]TCTTAGGACATGCCACATCTTGCAATGTTGTGAGTAGATGACAGATAAGA
98
+ RAC875_c95103_67,7A,GTGTGCATGTTGGATGGTCACATTCTAGTGTACTAGCTAGCTAGTAAGCT[T/G]GTTTTGCTACCGGATGATTGAATGTCATCTCAGTTTGTACCTCATCTAGC
99
+ RAC875_c9523_328,2A,TCGGCGTGTTGATCCTGGAGATCGTGTGTGGCCGTAGGAACAGCTCCCTC[A/G]ttgatcacgaatggtcaatgaaccttgtgggccacgcatggacgctgtgg
100
+ RAC875_c9542_235,7A,TATTTCATCCGAGCAGGGAGAAATGCCAGTAGTTCAATATTGCCAGATGG[T/G]CAACTGTCTTATTAGGATGGAATCCCGTCCGTATAAGATTGGTGGTTCCT
101
+ RAC875_c9543_99,7B,CGGAGTAAATATATGAAACACAACGGGGAACTTGTGTTTGCTAAAATGAT[T/G]GAGCGACTACTCTGCTTTGAATATATGCAGGGCGGAAGCCTTGAGAAATA
102
+ RAC875_c95993_265,3B,GCGGCTCCATGGAAGCCGCCATCATGTTGTCCGACTAAATGTGGAGTTAC[T/C]TGTGCAAGTTCCACCATCAACAAACACAAAGTTCTGCATGCTATCATCGC
103
+ RAC875_c9601_1680,1D,CTGATGAACCAGAATGCCCATTCCTTATGAAGCGTGGGTACTGTAAACTT[A/C]gggcacaatgtaagttttatcacccagaggcttcgagcccaacagatgca
104
+ RAC875_c9617_395,5A,TCCACTTCCAGCACCCAGCCCTCCCAGATATCGAAACTATGGCTTGCAAA[T/C]acaaactccatcttcctattgatctgcaacaattttgccaccagcaacaa
105
+ RAC875_c9643_641,4B,GACTCATGGTTGAAGGTCCACTTGGAGCCCGACCACATAAAGATCCCACC[A/G]TTCTTTGAGTCTGTGTCCATATTCAAACGCATACTGGAAAATAGGCCTTG
106
+ RAC875_c9677_131,7A,TCCCCCTACAGCGACTACGTCCGCGACATGCGCAAGCTTTTCATCGTCGA[A/G]CTGCTCAGCCGCCGCCGCGTGCAGGCCGCTTGCTACGCTCGCGATACCCA
107
+ RAC875_c96815_366,7B,AGGAGTGCCGCGAGGCCATGGACGCCATCAAGGCTCAGCGCGACCACGAC[T/G]AGAGGGTCCTCGCCGACTTCAAGCGCGACGGCTACGCCTACGTCCAGGTT
108
+ RAC875_c9691_870,2A,ATGTACGGAAAGGCAGCCGAATTCTGGGCGGACTTGCGCCTTGAGCTCCT[A/G]TCAGCAGGTGAAATCTCTGGAGAAGAGAAAGGTGTTTCAAATCAAATATG
109
+ RAC875_c9697_1091,7B,GTGTATTTGCATGGTAAGTATGGAGCCGTACCTCCACTCATCTGGGTCGG[T/C]GGATCAACATCGAGGACATGACCAGGAGGGGGTGGGTGGGTGTTTGTCTG
110
+ RAC875_c97040_104,1A,CCTGGCGAGGAAAACCACATCAATGGGACACAAAATGTAGAACCCAATGA[A/G]TGGTTTCATGAGATGGCCCCGATGGCACACAGACTCCTTTCAGCTTTAAT
111
+ RAC875_c9706_2240,7A,TCACTTTCTGGTCGCACTTCCACCAGTTGTGTGATATCTTTGTTCACGAC[A/G]CTCCTCCCACCCATCTGAATCTCAACAGGCTTTGTCAGCACTTTACGTGC
112
+ RAC875_c97462_415,2B,CGCTAAAGAATTATTTCCGTGGGCAAAATGATCTATACCTGCTACAAATT[A/G]acactgccaagattgcagatggcttaatttatgaggcagctgatggctgt
113
+ RAC875_c9791_2297,1B,TTGTCAGAGGCTACACCAGCTTCGGGTGTTTGAGCAATCCAAGAAGGTAT[A/C]GTCACACAGTAACTCCAGCCTGTTTGAGGGTTATGTGGCCAGACGGTGTT
114
+ RAC875_c9795_209,3B,CAAACTAAGTTGCACGCCGTTGGGATGGTCCTCCGTGGCGACCCTCACCG[A/C]AGCATCTGCTTCCTCCAGCTCGACGTCAGTTGCTTTTTTCACACAGAAGC
115
+ RAC875_c97988_123,2B,CTTCTAGAAACACCGTTGTATTCCTCCTCGGACTGTTCCTCTCGTCCGTC[A/G]CGATGAGCAACGCGGCAAGAATGCTAGAGGAGGAGATGGCTCTGTCCAAA
116
+ RAC875_c97988_87,2B,GAAGCGTAGAACAACCATAGGCGCCCAGAAAAATGGCTTCTAGAAACACC[A/G]TTGTATTCCTCCTCGGACTGTTCCTCTCGTCCGTCGCGATGAGCAACGCG
117
+ RAC875_c982_710,6B,TGGGAGCCATAGTTGTTTGGGCAGGAGCAAAATGCCTTTGTGATGGTCGA[T/G]AGCTGGACATGGGTCTCGATGCCGATAACAGATTCAAAACCTTGTATCTT
118
+ RAC875_c98608_173,5B,CTACAGAAGATGAGATCGTCGCTGCAGACGGTGGAGGCCCTGCTCGAAGA[T/C]GCTGAGAGGCGGTCCATCACGGATCAGGCGGTGCGTCTGTGGCTGGGGCG
119
+ RAC875_c98794_101,3D,cataaatcgtcatacatatagagaggggaatccagggcaatctcagggtt[A/G]GGGAGCAATCCAGCAATGATCACCAGCACCTGAAAGTACCATGTCTCAAG
120
+ RAC875_c99286_60,6A,GCAGATTAAGGTCAGAGGAAGCATCTGCTACGAGGAACATCTTCGTCTTC[A/G]ACCTACAGGTGGAATATGCAGAGCAAGCACGGGCGTGCATCCGTGCCGCC
121
+ RAC875_c99286_90,6A,CGAGGAACATCTTCGTCTTCAACCTACAGGTGGAATATGCAGAGCAAGCA[T/C]GGGCGTGCATCCGTGCCGCCTTGGGTAGCCACCCCAGATTCGTCGTGCCC
122
+ RAC875_c9932_705,2B,TGCCGATGCAGATGTCCAGCAATGATAAGGTTGCTACGCTCAAAGAACAA[T/C]GGATGGTACATAAGCGAGCACAGGGAATTCCACAACCACTCTCTTACAGA
123
+ RAC875_c9934_252,5A,TAGAGTCGGACGCGTCGTGATGGCCGCAGCGGCCAAGCATCTGACGCCGG[T/C]CGTCTTGGAGCTCGGTGGCAAATGCCCGGTGGTTGTCGATTCAAACGTCG
124
+ RAC875_c9934_814,5A,CTCCAGAACCAGTTCGAGGGGGCCATTTCTGCAGGAGGAATGCTCTTCAA[T/C]gacaccagcatacatctcacaaacccatacctgccatttggaggagttgg
125
+ RAC875_c99584_503,4B,GGTCTTTGCCCTCGACGGCGTGATCCTTACCGGCTTCCACCGTCTCGGAC[A/G]CCTTCCCCATGGCCTCGTCGCCCATCTTTTTAGCCGCCTCGGTAGTCTCG
126
+ RAC875_c998_939,6A,TCAAAACACTCACCCTTGGTGTGTCCTTTTCTCTTGCAATGGTCACAAAG[T/C]AATTTGCTTTTATCCACCTTACCAAAGGAATTTGTAGCACGACGAGGTTG
127
+ RAC875_c999_612,2D,GACAAGTTCATGGTGCACATCGAAACCCATGGACAGCCAGAGAAGTCGCA[T/C]AGCTTCAGGGATTTCATTGATAAGTGCCTCAGCCTGCTGACCAAGGGCAA
128
+ RAC875_c9994_887,4B,TGGGGACTTGGGAGGCGATCGTAAAAGCGGTGTGCTACAGTGTAATGCAC[T/G]AGCAATATGTGAAGATTTTTTTAAGGAGGGGGTTAATAAACAATCAGAAA
129
+ RAC875_c99953_224,2B,GTCGAGACTTACGAGCTTGGGGAGAGTGGCTCACACTATGTGGATGACCA[T/C]GATGGAGAGGAACGAGTTAAAAGTGCTCTTGCACATATTGGCACTCATGC
130
+ RAC875_c9998_353,7A,GGTACACAATGTAGCAATATTGTGGAGCATTTCGGATTTACACATCTTAG[T/C]GCTGGAGAGCTGTTGCGCTCAGAAATCAAGTCTGGTTCTGACAATGGAAC
131
+ RAC875_rep_c100137_114,6B,GACCCACGGATCATTGCAGTCAGCGGCAATGCCATCAAGTCACAAATATG[T/C]GATTGTTCTGAATTGGACCAAGAGCTTGGGTCCTTGATCGTCCGGTGAAT
132
+ RAC875_rep_c101430_180,6A,GTTGAACATAGGGGTTCTTGGCCTGAGCATGCAAGTGTATGGCCGGGACA[A/G]TCGTTACGTGATTAATATGTTGGGAAAATCAGTAATGGTCGAGCAAACCG
133
+ RAC875_rep_c101664_297,2D,ggcttatggtttatcacctcaggtgccatccatctgtaggtgccagtttc[A/G]GCAGTCATATCTCCCTCTTGCGATCGTTGACGAGAGACACCAAAATCTGC
134
+ RAC875_rep_c101933_656,1B,ATTCATCCCAACCCCCCATATGTGGCATCCAGATCGTACATAGCACTAGA[T/C]GGATCCACATCTAGGTCCCCTGTGTAGTTGTAGTCATCACCATTGCTCTC
135
+ RAC875_rep_c102406_205,4D,TGAGAGGTCGACCCAGGCTACTAGGCCTAAATCTCCTTTTATGGTGATTG[T/C]CTTGTATGTGGTGAGCTGGTAGGGGACTGAATCGACATTCACCAGCACTT
136
+ RAC875_rep_c102406_390,4D,ACGAAGGTGCAGTCAGGTTTGCCATTGCTCACAATGGCAAAGGAGTGATC[A/G]TTGACTGGGTGGTCGTCGCCCGGCTGCTTGATGTGCTTGAGCTCAGGGAC
137
+ RAC875_rep_c102485_468,2B,ATGCAGACCCCACGCCGAGCCTCATGGTAGTATTTGACCAAAAGATTAAC[A/G]caatcggcctttagtatatcgttgcatccatgtcgcagtgaagtttctgt
138
+ RAC875_rep_c102601_57,2D,GGCGTCCGCATCAAGCCGTGGGAGAACTCCCCTACCAAGAGCCTCGCCGC[A/G]CGCATGCTGTTCGAGAACATGGTGATGAAGGACGTGCAGACCCCCATCAT
139
+ RAC875_rep_c102709_719,3B,TATCGCAATGCCTTTCTTTTTAAAAGATTGCCTTCTTTCGTGAGGTGTTT[A/G]cattggtctttcagtaaacagaaccttgattcactgtgctgaattttgtt
140
+ RAC875_rep_c103893_601,2D,CCATGATGAGTTAATACAACATACGCTTTGCCATTCGCCCTTTGTGGTGT[T/C]GAAGCTTGCAGTGTAGCCAATAGTATCCCATTCGTAGCTAGTTCTTATGA
141
+ RAC875_rep_c104133_1757,1B,TGTTCTTTTTCATGCTATCATGTAGGTTATTGTGATTGTAGAAAAATCTA[T/C]AGATCTGCTTAGCACTTTTAACTATCACGCCAATCTCACGAAACTTAGCA
142
+ RAC875_rep_c104133_703,1B,ATCGTCCCTCCTTGCAAGACGAGAAACTTTCCTACTTGAGTTAAGCAAAC[A/G]TATTTTCTCAAACACGGCGCTAGCAGCATCAACTCCATCCAAGATTGCAT
143
+ RAC875_rep_c104197_411,6B,ACTCTTTTGAGCATTGCAAAGCATTATGAAACCGGTGAACCTCTTCCAGA[A/G]GAAATCTATGCTAAGCTTGTGGCTGCAAAGAATTTCCGTGCTGGCACCTT
144
+ RAC875_rep_c104674_867,7B,CTTGACATTCTAGAGGGCAAACCAGACTTGATCATTGGCAACTACACTGA[T/C]GGCAACTTGGTGGCGTCCCTCATGTCAAGCAAACTAGGAGTCACACAGGG
145
+ RAC875_rep_c104893_620,6B,TTAGCGTCCGTCTTCTTCACATTCTCCCTCGGAACCAAGACTCACTACTA[T/C]GGAAAGACGCTGCTCCACGGAGGAGCCGAGTACAGAGCCACCGGACGTGG
146
+ RAC875_rep_c104943_272,7A,CTGAYYCCCCATGACACTGTTTCTGTCCTTCAAGCATGTATCCAAGTAGA[A/G]GTCGTTTACCTGGTATCTATCATCAGGAGAGAATGGATATTTGTTAAGCT
147
+ RAC875_rep_c104986_200,1A,GTCACAATGTCCAGTAAAGATATCCCTGGGGCGGAGGTCCAGGCTTACAA[T/C]GATGAAATCCCCATTAAGTTAGGTCAACTTGATGGTGATCGCATTGGCTC
148
+ RAC875_rep_c105012_111,7B,ATCCCAGGTTAGGCTAGATTTGGTAAAGCTTCTGCGACAAGATAGCGAAA[T/C]AGACAACACGTGGAAGGACAGCAAAAGGATTCCCCACAGAACAGCCAGAA
149
+ RAC875_rep_c105053_57,2A,GCATCCATCTTTCCAGTCCGTTCAACGATTGAATATTTTATAGCAATGGC[A/G]actgtagcccttgtgtttgctgctgggctagttgtgcgttccttcagagc
150
+ RAC875_rep_c105085_313,7B,GCTGATCCGGCGGGGCAGGATGGACAAGCACATCGAGATGTCCTACTGCC[A/G]CTTTGAGGGCTTCAAGGTGCTCGCCAAGAACTACCTAGATGTCATTGAGC
151
+ RAC875_rep_c105150_589,2D,GGAGGAAGAATATCCCAGTGCTCGTAGATGCTTCCAGTTTGCTTCTCTTC[A/G]TTGTCAATGAGAATGCTGTATGTGGCATCAGGGCGGATGATCAAAGTGTA
152
+ RAC875_rep_c105184_88,3B,GCATTTGAAGATGAGCATGATATACCAGAACCCGTAGAAGAAAATTATGC[T/C]GGCTATCATTCAGAAGTTGAGGATGATAGGCACAAATTTGAAGACGAAGA
153
+ RAC875_rep_c105224_352,6B,gatctcctgaagatgatcaaggaggtggcgttccctatgaacatattgct[A/G]TCCCTCGCGCTCTCCATCTTCGTTAGGGGCGACCAGGCCAACTTCGAGAT
154
+ RAC875_rep_c105265_79,4D,TCAACAGAGAACCTTTCAGCAGCTTCGTGGAGCACGAAGTATCCATATTT[A/G]TTTATGCAGTTGGGATTGGCGTGCATCCCATAGAGCTCAGGTGCCATGCC
155
+ RAC875_rep_c105375_810,5D,CCACTTGGATTCGCCAAGAAACTTGGGTTTCTTGCAGGCAGCTCAACACC[A/G]GGTCCTGTTCTTGTTGTTTGCATGGGCACTGACACGTACCGACCAGCCTC
156
+ RAC875_rep_c105380_216,6B,TGTTTTGATCCTTCTCACCGTCCACCGATGATGGCCCGACAGAAATCAGG[A/G]AAGGAGAAAAGGATGTTGTTGTCATGGTCGTCGGAACGACTTGCCGTGGA
157
+ RAC875_rep_c105400_1131,1B,AGAGCTGCTTCAGTTTGTGTTCGCCTATCGCTTTCATTTTGTAGCTGGCC[A/G]TGAATACTGTGAATTTCCTCTCTCTTCCGTTCCACATCTTTCATCAGGAT
158
+ RAC875_rep_c105462_468,4A,TTGTCCAGGACCTTGTCGACCAAGTAGCCTTCACCCTGGTCATCCTTGAT[A/G]CTGAAGATATCAGCAGTGATCTCGACCAAGAAACTGAGGAGCTCGCCCTT
159
+ RAC875_rep_c105487_241,1D,TTATCATCTGCTCCATTGTCAATAGTACTGGCAATGTCTTCACAACATGG[A/G]TCTGTCACATTTTTGTGCAAAGTGGCAGCTTGGACAGCAGAGACAGGAAT
160
+ RAC875_rep_c105500_301,6B,GTCACAAATACCATGAAAAAGGGATCGCTGCTGCAACGTTTCTTCGACGG[T/C]GATGATGAATTCCGCAATAGCAGACTGAAGCTTATACCGGCCGTTCCGAA
161
+ RAC875_rep_c105537_890,5B,ATTGCAAATGAGTGGACATTTGTTCCTGCAGTTCTTAGTTGATGCAGCAA[T/C]GTGCATTGAACAGTGGAGACTAAATTGGTACAGGACAAACCAAGGTAAGT
162
+ RAC875_rep_c105658_115,1B,agaggtgattgaatacgcttaaactcagtctgaggattctgcaagttgaa[T/G]ATCACAATATTGCGATCAGCTGTTCCCACAATCATAAGGGGATAATTCAC
163
+ RAC875_rep_c105697_366,1A,TAATGTGATGACACATCCGAAGTGCGAGATTACTCAAGCATGGGGTGTGC[A/G]CAATGAAGCGCATCCCGGCATCAGTTACCGCATGACACAATATAAGCTCG
164
+ RAC875_rep_c105718_304,4D,GGAGCTGTTGCTGTACTAGGCCTTATTGCTGCATTAGGGTTCTATTGCTA[T/C]AAGAGAAAGCAGAAGCCTTCCGGAAGGGTGCAGAGTCCACATGCTATGGT
165
+ RAC875_rep_c105718_412,4D,CCCCGGCACTCAGGGTCAGATCCTGACATGGTAAAGATCACAGTTGCTGG[T/G]GGAAATGCCAATGGTGGTGCGGCCACGAGCGAGCCATATAGCCAGGCAAG
166
+ RAC875_rep_c105718_585,4D,GTGACCAACAACTTCAGTCAGGAGAACATCCTTGGTCGTGGTGGGTTTGG[T/C]ACTGTCTACAAGGGTGAGCTCCATGATGGTACAAAAATTGCTGTGAAGCG
167
+ RAC875_rep_c105718_672,4D,ATTGCTGTGAAGCGAATGGAGTCTGGTGTTATGGGCAACAAGGGGTTAAA[T/C]GAGTTCAAATCAGAGATTTCTGTGCTGACCAAGGTCCGTCATCGGAACCT
168
+ RAC875_rep_c105803_144,7D,ACTCGTACCGGTGTTTGTTCATGTGGGACACCTTCAAGTTCTTCGTACTC[A/G]GCTGCGTCCAGTTCCCGCAAGTCATTGGGCTCAAAGAACTTTGGGAGTAG
169
+ RAC875_rep_c105881_260,4A,CTCCATTTTTCTTCTGCTCTTTCTTCTGATAAATTATCACAAGAGCCTAT[T/C]GCGTCATCTTGGCCATTAACATCAGAACCATCATTTTCAATTGATTTCCG
170
+ RAC875_rep_c105884_546,5A,TCCATGATAGCAGCAAGCACAAATCGGTTATCCAAACTCCAGACAATCAT[A/G]TTGACACCACGAGGAGTTGGCTGATGTCTTTGTCGTGGACCACCACGAAT
171
+ RAC875_rep_c105919_164,7B,atgcacagggatgaggaggtgaactacttcccttcaaggtttgatcctac[T/C]CGTCATGCTGAACAGTACCCTATCCCTCCTCGCGTTCTATCTGGCTGCCG
172
+ RAC875_rep_c105922_169,4D,GGGCCAGTGAGCCAACACCTGTTTGAGTGGAAAGAACACAATTTGCAGCC[A/G]TTGGAATGGAAGAGGCGACTCAGCATTGCGCTTGATGTTGCAAGAGGTGT
173
+ RAC875_rep_c105927_650,5B,CGAAGTTCACTGACGCTGAACCAGGATCCTCTTCGCCTCTAAGAAAAATT[A/G]TTCCTGCCAGAAGCAGTACCCCAGGGAGTGATCCTCACAAAACAGCCAAA
174
+ RAC875_rep_c105937_467,6B,CAGAGTATCAGTTCTGATGCTCATGTTAGCCATGCTATGGTGGTTCTCCG[T/C]AAGCTCTTTACGGATGCTGCTGTACCAGATCCAGTGGCGTCAGTTGTCAC
175
+ RAC875_rep_c105942_155,1B,AGGCAAAACTTAAAAACGAATGGTTCCAGGAACATAGTTCTATATCCTTG[A/C]AGATAACTGGCTATAGCAAAACGACTCAACGCCTCAGAATCAGGCCTTGG
176
+ RAC875_rep_c106035_443,7B,TCAGTCCAGTCATCCACAATCTTCTGCCACTCGAATCCAGAAGGGTTGAA[A/C]AGGAAGGGTGCAAAGAGCCAGGTGCCCACCATAAACCACATGGAAACAGT
177
+ RAC875_rep_c106039_66,5B,TTCATTCTAGTTTTTCGAATTCCTCTTCAAGCCCCAAAGAATAATGCGGC[A/G]CAGTTACAGAAACAGCAACAAAAGGTGGTCGGGGAAGATGTACAATGTGG
178
+ RAC875_rep_c106093_670,1D,ATGCCATTTCTACTCAGAAGAACCAAGGATGAAGTCTTATCGGATCTTCC[A/G]GAGAAGATTATCCAGGACAGACATTGCAATCTCAGCCACTTACAGCTGAA
179
+ RAC875_rep_c106109_130,7B,ACTGAAGATTATCCTCCTGATACTCCTAAGCCATCAGTTGTGATACGGCC[T/C]CCTGCTGAAGTAGAGAAGGATGTACCTCGTAAGAAGGTCATTATCAAGCA
180
+ RAC875_rep_c106151_123,4A,CCCATTCTCAATGGCGAGTAGAAGCCCATCATGTACAACATAATCATTGG[A/G]TGAAAATTGGTCAGCCACCCTGACTTCTGTGATGTCTTTGAATGCAGAAG
181
+ RAC875_rep_c106158_701,4A,AATGATGAGAGCTCTAATTTTATCAACTCACTAGACACCATGACCACTCC[T/G]CCAAGATACATCATCGGCCTAGAGTTGTCTGGCAAGATGGAAAGGCCCCC
182
+ RAC875_rep_c106170_204,3D,GAAATCTTTTATGTCCCCCAGCGACCATATACAGCTGTCGGAACACTTCG[T/C]GACCAGTTAATCTATCCACTTACAGCAGATCAGGAAACCGAACCACTTAG
183
+ RAC875_rep_c106177_206,4B,ATTTGCATGGTCTATGGTGGCATCAATTGCACCATCTCTTATGGCCTTGG[T/C]TACGATGCACTCCGCATCAGCAACAGGATTCTCAGTGTCTAGCCTTAGCT
184
+ RAC875_rep_c106241_304,5A,ATGATCCTTCCTACTGGAGCTGCCTCATTCAAGGAGGCAATGAAGATGGG[T/C]gttgaagtgtaccacaacttgaagtctgttatcaagaagaagtatgggca
185
+ RAC875_rep_c106322_1091,4B,TGAACTTCCCAAGATCACGAAGTGCTATAGTTTTGAGATATATGGTCTCC[A/G]TTACTAGATTAACAGTATGCAAGGACATTGGTGGATAACTGGAATGTGGA
186
+ RAC875_rep_c106400_276,2B,CCCGATCTTTGCATCGACACGATCACAAAGAACCGAACAGGATTACACGA[A/G]cattccgccctgctgtaaccctttggctttgggaagtgcacgtagggcag
187
+ RAC875_rep_c106488_130,5A,CTTGCGTTAGTCTCATGGCAGGCCACTGCTTCTGATCCTAGCCCACTCCA[A/G]gacttttgtgtcgccgacatgaattcaccagtccgtgtcaatgggtttgt
188
+ RAC875_rep_c106533_93,7A,AATCGCATCCAAGGCGACTGTGGTGCGGTTGACTTAACCATAGCACGTGT[T/C]GATGACGCAGTCATGGCGAATATTGAAGTTGCCGTGTCAGAAGTGCAGAG
189
+ RAC875_rep_c106565_185,3B,CCGACAATGAGCGAGGTCATAGAGATGCTGGAAGGTGGCTTCGATGGCCT[T/G]CAGATGCCTTCCAGGCCATTCTTCTGTGATGATGAGCACACCGCTGTTCC
190
+ RAC875_rep_c106566_197,2B,ctgaccacattcaatgaagttgacatgaccaatttgatgaagctgcggtc[T/G]GACTACAAGGATGAATTTGTCAAGAAGCATGGTGTCAAACTGGGTCTGAT
191
+ RAC875_rep_c106588_205,7D,AYGATTACATGATGGCTGAGGAAGCTCCCTCCATTTCCAGCAGCGATCAG[A/G]TCCGTGATCCAGAGGTAGCAGAACGACCCATGGCTATGGTACGACCTGCT
192
+ RAC875_rep_c106636_232,3A,CTTTAGGCATCGCCCGAGGAACGGAGTACCTGCATCAAGGTTGCAACCAG[T/C]GCATCCTCCACTTTGACATCAAACCGCACAACATCTTGCTGGACTACAAC
193
+ RAC875_rep_c106876_558,1B,ttatgatcagattaagaagatgaacaccttcggctattttctggtactta[T/C]TGCGCCTTGCATAATCTTCGTGATGAATGTGCTTTGGTTCTCCAAGATCC
194
+ RAC875_rep_c106976_263,7A,ATCACCATCTCCCTGCTGTGGGTCGCCATCAACCCGCCGTCGCAGAACTC[A/G]CAGATCGGAGGCTCCTTCCAGTTCCCCTGATCGATGAAGCTAGCTTCCTC
195
+ RAC875_rep_c107031_84,2B,AATTAGGTCTTGCAGCAGGCGCCCCACCTCCAGAATAGGAACTATGAGGT[T/G]GTTGCTGCTGCCACTGTTGGGCTCCTGCATATGGTGCAGGCTGGTAGACC
196
+ RAC875_rep_c107110_137,3B,AAGAGATAATCACCGTGGCCAAGGCGGCCAACGCTCATGAGTTCATATCG[A/G]GCTTGCCACAGGGATACAACACTAACGTTGGTGAGAGAGGAACACAACTA