bio-polymarker 1.3.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (177) hide show
  1. checksums.yaml +7 -0
  2. data/.travis.yml +24 -0
  3. data/Gemfile +23 -0
  4. data/README.md +205 -0
  5. data/Rakefile +61 -0
  6. data/SECURITY.md +16 -0
  7. data/VERSION +1 -0
  8. data/bin/bfr.rb +128 -0
  9. data/bin/blast_triads.rb +166 -0
  10. data/bin/blast_triads_promoters.rb +192 -0
  11. data/bin/count_variations.rb +36 -0
  12. data/bin/filter_blat_by_target_coverage.rb +69 -0
  13. data/bin/filter_exonerate_by_identity.rb +38 -0
  14. data/bin/find_best_blat_hit.rb +33 -0
  15. data/bin/find_best_exonerate.rb +17 -0
  16. data/bin/get_longest_hsp_blastx_triads.rb +66 -0
  17. data/bin/hexaploid_primers.rb +168 -0
  18. data/bin/homokaryot_primers.rb +183 -0
  19. data/bin/mafft_triads.rb +120 -0
  20. data/bin/mafft_triads_promoters.rb +403 -0
  21. data/bin/map_markers_to_contigs.rb +66 -0
  22. data/bin/marker_to_vcf.rb +241 -0
  23. data/bin/markers_in_region.rb +42 -0
  24. data/bin/mask_triads.rb +169 -0
  25. data/bin/polymarker.rb +410 -0
  26. data/bin/polymarker_capillary.rb +443 -0
  27. data/bin/polymarker_deletions.rb +350 -0
  28. data/bin/snp_position_to_polymarker.rb +101 -0
  29. data/bin/snps_between_bams.rb +107 -0
  30. data/bin/tag_stats.rb +75 -0
  31. data/bin/vcfLineToTable.rb +56 -0
  32. data/bin/vcfToPolyMarker.rb +82 -0
  33. data/bio-polymarker.gemspec +227 -0
  34. data/conf/defaults.rb +1 -0
  35. data/conf/primer3_config/dangle.dh +128 -0
  36. data/conf/primer3_config/dangle.ds +128 -0
  37. data/conf/primer3_config/interpretations/dangle_i.dh +131 -0
  38. data/conf/primer3_config/interpretations/dangle_i.ds +131 -0
  39. data/conf/primer3_config/interpretations/loops_i.dh +34 -0
  40. data/conf/primer3_config/interpretations/loops_i.ds +31 -0
  41. data/conf/primer3_config/interpretations/stack_i.dh +257 -0
  42. data/conf/primer3_config/interpretations/stack_i.ds +256 -0
  43. data/conf/primer3_config/interpretations/stackmm_i_mm.dh +257 -0
  44. data/conf/primer3_config/interpretations/stackmm_i_mm.ds +256 -0
  45. data/conf/primer3_config/interpretations/tetraloop_i.dh +79 -0
  46. data/conf/primer3_config/interpretations/tetraloop_i.ds +81 -0
  47. data/conf/primer3_config/interpretations/triloop_i.dh +21 -0
  48. data/conf/primer3_config/interpretations/triloop_i.ds +18 -0
  49. data/conf/primer3_config/interpretations/tstack2_i.dh +256 -0
  50. data/conf/primer3_config/interpretations/tstack2_i.ds +256 -0
  51. data/conf/primer3_config/interpretations/tstack_i.dh +256 -0
  52. data/conf/primer3_config/interpretations/tstack_i.ds +256 -0
  53. data/conf/primer3_config/interpretations/tstack_tm_inf_i.dh +256 -0
  54. data/conf/primer3_config/interpretations/tstack_tm_inf_i.ds +256 -0
  55. data/conf/primer3_config/loops.dh +30 -0
  56. data/conf/primer3_config/loops.ds +30 -0
  57. data/conf/primer3_config/stack.dh +256 -0
  58. data/conf/primer3_config/stack.ds +256 -0
  59. data/conf/primer3_config/stackmm.dh +256 -0
  60. data/conf/primer3_config/stackmm.ds +256 -0
  61. data/conf/primer3_config/tetraloop.dh +77 -0
  62. data/conf/primer3_config/tetraloop.ds +77 -0
  63. data/conf/primer3_config/triloop.dh +16 -0
  64. data/conf/primer3_config/triloop.ds +16 -0
  65. data/conf/primer3_config/tstack.dh +256 -0
  66. data/conf/primer3_config/tstack2.dh +256 -0
  67. data/conf/primer3_config/tstack2.ds +256 -0
  68. data/conf/primer3_config/tstack_tm_inf.ds +256 -0
  69. data/lib/bio/BFRTools.rb +465 -0
  70. data/lib/bio/BIOExtensions.rb +153 -0
  71. data/lib/bio/PolyploidTools/ChromosomeArm.rb +63 -0
  72. data/lib/bio/PolyploidTools/ExonContainer.rb +245 -0
  73. data/lib/bio/PolyploidTools/Marker.rb +175 -0
  74. data/lib/bio/PolyploidTools/Mask.rb +116 -0
  75. data/lib/bio/PolyploidTools/NoSNPSequence.rb +292 -0
  76. data/lib/bio/PolyploidTools/PrimerRegion.rb +30 -0
  77. data/lib/bio/PolyploidTools/SNP.rb +804 -0
  78. data/lib/bio/PolyploidTools/SNPMutant.rb +86 -0
  79. data/lib/bio/PolyploidTools/SNPSequence.rb +55 -0
  80. data/lib/bio/db/blast.rb +114 -0
  81. data/lib/bio/db/exonerate.rb +333 -0
  82. data/lib/bio/db/primer3.rb +820 -0
  83. data/lib/bio-polymarker.rb +28 -0
  84. data/test/data/7B_amplicon_test.fa +12 -0
  85. data/test/data/7B_amplicon_test.fa.fai +1 -0
  86. data/test/data/7B_amplicon_test_reference.fa +110 -0
  87. data/test/data/7B_amplicon_test_reference.fa.fai +3 -0
  88. data/test/data/7B_marker_test.txt +1 -0
  89. data/test/data/BS00068396_51.fa +2 -0
  90. data/test/data/BS00068396_51_blast.tab +4 -0
  91. data/test/data/BS00068396_51_contigs.aln +1412 -0
  92. data/test/data/BS00068396_51_contigs.dnd +7 -0
  93. data/test/data/BS00068396_51_contigs.fa +8 -0
  94. data/test/data/BS00068396_51_contigs.fa.fai +4 -0
  95. data/test/data/BS00068396_51_contigs.fa.nhr +0 -0
  96. data/test/data/BS00068396_51_contigs.fa.nin +0 -0
  97. data/test/data/BS00068396_51_contigs.fa.nsq +0 -0
  98. data/test/data/BS00068396_51_contigs.nhr +0 -0
  99. data/test/data/BS00068396_51_contigs.nin +0 -0
  100. data/test/data/BS00068396_51_contigs.nsq +0 -0
  101. data/test/data/BS00068396_51_exonerate.tab +6 -0
  102. data/test/data/BS00068396_51_for_polymarker.txt +1 -0
  103. data/test/data/BS00068396_51_genes.txt +14 -0
  104. data/test/data/IWGSC_CSS_1AL_scaff_1455974.fa +112 -0
  105. data/test/data/IWGSC_CSS_1AL_scaff_1455974_aln_contigs.fa +2304 -0
  106. data/test/data/IWGSC_CSS_1AL_scaff_1455974_aln_contigs.fa.fai +11 -0
  107. data/test/data/LIB1716.bam +0 -0
  108. data/test/data/LIB1716.bam.bai +0 -0
  109. data/test/data/LIB1719.bam +0 -0
  110. data/test/data/LIB1719.bam.bai +0 -0
  111. data/test/data/LIB1721.bam +0 -0
  112. data/test/data/LIB1721.bam.bai +0 -0
  113. data/test/data/LIB1722.bam +0 -0
  114. data/test/data/LIB1722.bam.bai +0 -0
  115. data/test/data/PST130_7067.csv +1 -0
  116. data/test/data/PST130_7067.fa +2 -0
  117. data/test/data/PST130_7067.fa.fai +1 -0
  118. data/test/data/PST130_7067.fa.ndb +0 -0
  119. data/test/data/PST130_7067.fa.nhr +0 -0
  120. data/test/data/PST130_7067.fa.nin +0 -0
  121. data/test/data/PST130_7067.fa.not +0 -0
  122. data/test/data/PST130_7067.fa.nsq +0 -0
  123. data/test/data/PST130_7067.fa.ntf +0 -0
  124. data/test/data/PST130_7067.fa.nto +0 -0
  125. data/test/data/PST130_reverse_primer.csv +1 -0
  126. data/test/data/S22380157.fa +16 -0
  127. data/test/data/S22380157.fa.fai +1 -0
  128. data/test/data/S22380157.vcf +67 -0
  129. data/test/data/S58861868/LIB1716.bam +0 -0
  130. data/test/data/S58861868/LIB1716.sam +651 -0
  131. data/test/data/S58861868/LIB1719.bam +0 -0
  132. data/test/data/S58861868/LIB1719.sam +805 -0
  133. data/test/data/S58861868/LIB1721.bam +0 -0
  134. data/test/data/S58861868/LIB1721.sam +1790 -0
  135. data/test/data/S58861868/LIB1722.bam +0 -0
  136. data/test/data/S58861868/LIB1722.sam +1271 -0
  137. data/test/data/S58861868/S58861868.fa +16 -0
  138. data/test/data/S58861868/S58861868.fa.fai +1 -0
  139. data/test/data/S58861868/S58861868.vcf +76 -0
  140. data/test/data/S58861868/header.txt +9 -0
  141. data/test/data/S58861868/merged.bam +0 -0
  142. data/test/data/S58861868/merged_reheader.bam +0 -0
  143. data/test/data/S58861868/merged_reheader.bam.bai +0 -0
  144. data/test/data/Test3Aspecific.csv +2 -0
  145. data/test/data/Test3Aspecific_contigs.fa +6 -0
  146. data/test/data/bfr_out_test.csv +5 -0
  147. data/test/data/chr1A_C1145499T/chr1A_C1145499T.csv +1 -0
  148. data/test/data/chr1A_G540414846C/chr1A_G540414846C.csv +1 -0
  149. data/test/data/chr1A_G540414846C/chr1A_G540414846C.fa +2 -0
  150. data/test/data/chr1A_T517634750C/chr1A_T517634750C.csv +1 -0
  151. data/test/data/chr2D_C112180134A/chr2D_C112180134A.csv +1 -0
  152. data/test/data/chr4D_C14473543T/chr4D_C14473543T.csv +1 -0
  153. data/test/data/chr4D_C14473543T/chr4D_C14473543T.fa +2 -0
  154. data/test/data/headerMergeed.txt +9 -0
  155. data/test/data/headerS2238015 +1 -0
  156. data/test/data/mergedLibs.bam +0 -0
  157. data/test/data/mergedLibsReheader.bam +0 -0
  158. data/test/data/mergedLibsSorted.bam +0 -0
  159. data/test/data/mergedLibsSorted.bam.bai +0 -0
  160. data/test/data/patological_cases5D.csv +1 -0
  161. data/test/data/primer_3_input_header_test +5 -0
  162. data/test/data/short_primer_design_test.csv +10 -0
  163. data/test/data/some_tests/some_tests.csv +201 -0
  164. data/test/data/test_from_mutant.csv +3 -0
  165. data/test/data/test_iselect.csv +196 -0
  166. data/test/data/test_iselect_reference.fa +1868 -0
  167. data/test/data/test_iselect_reference.fa.fai +934 -0
  168. data/test/data/test_primer3_error.csv +4 -0
  169. data/test/data/test_primer3_error_contigs.fa +10 -0
  170. data/test/test_bfr.rb +135 -0
  171. data/test/test_blast.rb +47 -0
  172. data/test/test_exon_container.rb +17 -0
  173. data/test/test_exonearate.rb +48 -0
  174. data/test/test_integration.rb +76 -0
  175. data/test/test_snp_parsing.rb +121 -0
  176. data/test/test_wrong_selection.sh +5 -0
  177. metadata +356 -0
data/test/data/BS00068396_51_contigs.aln ADDED
@@ -0,0 +1,1412 @@
1
+ CLUSTAL 2.1 multiple sequence alignment
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+
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+
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+ 2BS_5245544 ------------------------------------------------------------
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+ 2DS_5334799 ------------------------------------------------------------
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+ 2AS_5222932 ------------------------------------------------------------
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+ 2BS_5163353 ATGTAGTGGTGGTGTGTGAGCGACATTTGAATAGTTTCTGTAATATATGTGTGGATGTGA
8
+
9
+
10
+ 2BS_5245544 ------------------------------------------------------------
11
+ 2DS_5334799 ------------------------------------------------------------
12
+ 2AS_5222932 ------------------------------------------------------------
13
+ 2BS_5163353 ACCTACTTAGGCGTGACAGCAGATATGTTTTTTATATTTATCATTATTACTGTGGTTTCA
14
+
15
+
16
+ 2BS_5245544 ------------------------------------------------------------
17
+ 2DS_5334799 ------------------------------------------------------------
18
+ 2AS_5222932 ------------------------------------------------------------
19
+ 2BS_5163353 TCGTTTGTATCACCCGTTTGCTGTTTTGAATGCATCACGATGTTTTAAAACATGGCAAAT
20
+
21
+
22
+ 2BS_5245544 ------------------------------------------------------------
23
+ 2DS_5334799 ------------------------------------------------------------
24
+ 2AS_5222932 ------------------------------------------------------------
25
+ 2BS_5163353 GTAGTTCATCAGACATGGTTAGCGAAAGTCATCGTCATTGTTCATTTGGACATTTTGCTT
26
+
27
+
28
+ 2BS_5245544 ------------------------------------------------------------
29
+ 2DS_5334799 ------------------------------------------------------------
30
+ 2AS_5222932 ------------------------------------------------------------
31
+ 2BS_5163353 CTCCTATTTCATCACTAACTTCACCGGCTAGCATGGTAGGTTGATCATGGAGCCACAACC
32
+
33
+
34
+ 2BS_5245544 ------------------------------------------------------------
35
+ 2DS_5334799 ------------------------------------------------------------
36
+ 2AS_5222932 ------------------------------------------------------------
37
+ 2BS_5163353 TTTGATGCGGTTTATGCACATTACGCTTTTTCTAACTTGTTTCCCATATATTGCACACAA
38
+
39
+
40
+ 2BS_5245544 ------------------------------------------------------------
41
+ 2DS_5334799 ------------------------------------------------------------
42
+ 2AS_5222932 ------------------------------------------------------------
43
+ 2BS_5163353 CACAATATGTGTCACTAAACCGCGTCGATTTTGTCATATAAATATATGCGATGCAGAGTC
44
+
45
+
46
+ 2BS_5245544 ------------------------------------------------------------
47
+ 2DS_5334799 ------------------------------------------------------------
48
+ 2AS_5222932 ------------------------------------------------------------
49
+ 2BS_5163353 ATTACAAATACCATGGCATATTTTCAGTACAGCTAACATGGCAGATCCAGTACAAACAAC
50
+
51
+
52
+ 2BS_5245544 ------------------------------------------------------------
53
+ 2DS_5334799 ------------------------------------------------------------
54
+ 2AS_5222932 ------------------------------------------------------------
55
+ 2BS_5163353 ACGGCAGATCCAGCATAATTAACATGGCAGATCCAGCATAACTAACATGGCAAATCCAGT
56
+
57
+
58
+ 2BS_5245544 ------------------------------------------------------------
59
+ 2DS_5334799 ------------------------------------------------------------
60
+ 2AS_5222932 ------------------------------------------------------------
61
+ 2BS_5163353 ACAACTAACATGGCAGATCCAGTGCAACTAGCATTGCATATTTTTCAGTATAAAATAGTA
62
+
63
+
64
+ 2BS_5245544 ------------------------------------------------------------
65
+ 2DS_5334799 ------------------------------------------------------------
66
+ 2AS_5222932 ------------------------------------------------------------
67
+ 2BS_5163353 TGGCATATTTTTAGTACAAAATAGCATGGCATATTTTTAGTATAAAATAGCATGGCAGAT
68
+
69
+
70
+ 2BS_5245544 ------------------------------------------------------------
71
+ 2DS_5334799 ------------------------------------------------------------
72
+ 2AS_5222932 ------------------------------------------------------------
73
+ 2BS_5163353 TAACTACATATAACATGGCAGATTAAGTACCCATACCATGGCAAATTAAGTACCCATAAC
74
+
75
+
76
+ 2BS_5245544 ------------------------------------------------------------
77
+ 2DS_5334799 ------------------------------------------------------------
78
+ 2AS_5222932 ------------------------------------------------------------
79
+ 2BS_5163353 ATGGCAGATTAAGTACCAACAATATGGCAACTACATTTACCCATTCAATGCATTCTCCTT
80
+
81
+
82
+ 2BS_5245544 ------------------------------------------------------------
83
+ 2DS_5334799 ------------------------------------------------------------
84
+ 2AS_5222932 ------------------------------------------------------------
85
+ 2BS_5163353 CAACTTCTGAAGCCCCTCTAGAGTCATTATCCCAAATCAAAAAAGTTCACAGCATATAGG
86
+
87
+
88
+ 2BS_5245544 ------------------------------------------------------------
89
+ 2DS_5334799 ------------------------------------------------------------
90
+ 2AS_5222932 ------------------------------------------------------------
91
+ 2BS_5163353 GTACAAAACAAATGTCCACAATGACCATGTCACAGTGCCCCAACTTTTGCTTACGGATTG
92
+
93
+
94
+ 2BS_5245544 ------------------------------------------------------------
95
+ 2DS_5334799 ------------------------------------------------------------
96
+ 2AS_5222932 ------------------------------------------------------------
97
+ 2BS_5163353 CCCGTCCCTTTCTTCGTTTTCTTGTGTTTTGCTTGAATCTCCAATCCCGATTTTTACCTT
98
+
99
+
100
+ 2BS_5245544 ------------------------------------------------------------
101
+ 2DS_5334799 ------------------------------------------------------------
102
+ 2AS_5222932 ------------------------------------------------------------
103
+ 2BS_5163353 ATCTCTCTTGGACGACCCTTTGTGATGGAACGGGGTGGGTTCCTGACCTGGGTTTGTGTG
104
+
105
+
106
+ 2BS_5245544 ------------------------------------------------------------
107
+ 2DS_5334799 ------------------------------------------------------------
108
+ 2AS_5222932 ------------------------------------------------------------
109
+ 2BS_5163353 CTTGCTGTTCCAGATCCTATCTCAGAGTTTTCAAATGATGGCCCCATGGATGAAGGCACA
110
+
111
+
112
+ 2BS_5245544 ------------------------------------------------------------
113
+ 2DS_5334799 ------------------------------------------------------------
114
+ 2AS_5222932 ------------------------------------------------------------
115
+ 2BS_5163353 CTTGATGTGCGGGGGAACCGGTGTAAGGCTTCCTCAGCTTTCCTCTTCTTGATCTCATCA
116
+
117
+
118
+ 2BS_5245544 ------------------------------------------------------------
119
+ 2DS_5334799 ------------------------------------------------------------
120
+ 2AS_5222932 ------------------------------------------------------------
121
+ 2BS_5163353 AGCTCTCTTTTCAGGGCCTTCCTGTGTTTTTCTGCGACTCTCGTTGTCTCATCACTCTTG
122
+
123
+
124
+ 2BS_5245544 ------------------------------------------------------------
125
+ 2DS_5334799 ------------------------------------------------------------
126
+ 2AS_5222932 ------------------------------------------------------------
127
+ 2BS_5163353 CACGCTTCATCAATTAGCTCAGCATAGTTCTTTGTCAACACAACATGCCTCACGGCTTCC
128
+
129
+
130
+ 2BS_5245544 ------------------------------------------------------------
131
+ 2DS_5334799 ------------------------------------------------------------
132
+ 2AS_5222932 ------------------------------------------------------------
133
+ 2BS_5163353 ATGGTTGCCTCAGGTCTCTCGTCATGCACAGCCAGAACTGCATTTGTTGTCTGCGGCGCA
134
+
135
+
136
+ 2BS_5245544 ------------------------------------------------------------
137
+ 2DS_5334799 ------------------------------------------------------------
138
+ 2AS_5222932 ------------------------------------------------------------
139
+ 2BS_5163353 AACGCGTCGTCAGCGTCCCAAGTCCATCGCCACCTTATGAAATGGCGGGGCATGCGTGTC
140
+
141
+
142
+ 2BS_5245544 ------------------------------------------------------------
143
+ 2DS_5334799 ------------------------------------------------------------
144
+ 2AS_5222932 ------------------------------------------------------------
145
+ 2BS_5163353 ACAGCGTTCTCCATTACTTTCAGTATGTGACAACACACAATGTCGTCCCGTTCAAACTTG
146
+
147
+
148
+ 2BS_5245544 ------------------------------------------------------------
149
+ 2DS_5334799 ------------------------------------------------------------
150
+ 2AS_5222932 ------------------------------------------------------------
151
+ 2BS_5163353 CAGCATTGGCAGTAGTATTGCCTTGTTCGATTGAGGCTTTCACGAAGTAGTTCCTTCCTT
152
+
153
+
154
+ 2BS_5245544 ------------------------------------------------------------
155
+ 2DS_5334799 ------------------------------------------------------------
156
+ 2AS_5222932 ------------------------------------------------------------
157
+ 2BS_5163353 TGTCCGGGTCTTCAGGTTCTGAATCCGACATGCCCAAAATAGAACACACCTTGAACGTAT
158
+
159
+
160
+ 2BS_5245544 ------------------------------------------------------------
161
+ 2DS_5334799 ------------------------------------------------------------
162
+ 2AS_5222932 ------------------------------------------------------------
163
+ 2BS_5163353 GTTCGTCCGCCTGGAAAGCCGTGAACATGCTGGCACGCTTTATTTCTTCCTTGAATCTGC
164
+
165
+
166
+ 2BS_5245544 ------------------------------------------------------------
167
+ 2DS_5334799 ------------------------------------------------------------
168
+ 2AS_5222932 ------------------------------------------------------------
169
+ 2BS_5163353 AAGTTTTGTGTGTTTTCTATTAAACTATCGTGTGATCTTTTTTTGTAGCATCTTATGTTG
170
+
171
+
172
+ 2BS_5245544 ------------------------------------------------------------
173
+ 2DS_5334799 ------------------------------------------------------------
174
+ 2AS_5222932 ------------------------------------------------------------
175
+ 2BS_5163353 TCATGGAAATAGAAATAGATTTTTGTTTGAACATGGCAAACATAGTATACTAAACATGGC
176
+
177
+
178
+ 2BS_5245544 ------------------------------------------------------------
179
+ 2DS_5334799 ------------------------------------------------------------
180
+ 2AS_5222932 ------------------------------------------------------------
181
+ 2BS_5163353 AAACATAGTGCACTAAACATGGCAAACATAGTACACTGAACATGGCAACTGCAGTAAACT
182
+
183
+
184
+ 2BS_5245544 ------------------------------------------------------------
185
+ 2DS_5334799 ------------------------------------------------------------
186
+ 2AS_5222932 ------------------------------------------------------------
187
+ 2BS_5163353 ATACAAGGCAACTGTATTGCATTTTCAACTGACCATTGTCATTTCCACACCAACACTCCT
188
+
189
+
190
+ 2BS_5245544 ------------------------------------------------------------
191
+ 2DS_5334799 ------------------------------------------------------------
192
+ 2AS_5222932 ------------------------------------------------------------
193
+ 2BS_5163353 CACTGGAAGCCCTTTGCATAAAACATGGCAACTGAATTTTTATTGAACATGGCATCTACA
194
+
195
+
196
+ 2BS_5245544 ------------------------------------------------------------
197
+ 2DS_5334799 ------------------------------------------------------------
198
+ 2AS_5222932 ------------------------------------------------------------
199
+ 2BS_5163353 GTTGAGTAAACATGGCAACTGCATTTTTCAACAAACATGGAAGTTTTGCATTTTTAGAAA
200
+
201
+
202
+ 2BS_5245544 ------------------------------------------------------------
203
+ 2DS_5334799 ------------------------------------------------------------
204
+ 2AS_5222932 ------------------------------------------------------------
205
+ 2BS_5163353 ACATGGCAACTGCATTTCATCAAATGTGTCTAGAATATAACGTTTTTCAGTTGACATTGG
206
+
207
+
208
+ 2BS_5245544 ------------------------------------------------------------
209
+ 2DS_5334799 ------------------------------------------------------------
210
+ 2AS_5222932 ------------------------------------------------------------
211
+ 2BS_5163353 CATTTGCATACCAACATGCCCCAATGGCAGTACAGTGCATTAAACATGGCAACTGCACTT
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+
213
+
214
+ 2BS_5245544 ------------------------------------------------------------
215
+ 2DS_5334799 ------------------------------------------------------------
216
+ 2AS_5222932 ------------------------------------------------------------
217
+ 2BS_5163353 CATTAAACATGACAAACAAATTTTTCATTAAACATGGCAACTGCAATTGAGTAAGCATGG
218
+
219
+
220
+ 2BS_5245544 ------------------------------------------------------------
221
+ 2DS_5334799 ------------------------------------------------------------
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+ 2AS_5222932 ------------------------------------------------------------
223
+ 2BS_5163353 CAAACAGTATTTCATTACACATGGCAACTGCATATCATGGCAACTGCATTGCACCCTATA
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+
225
+
226
+ 2BS_5245544 ------------------------------------------------------------
227
+ 2DS_5334799 ------------------------------------------------------------
228
+ 2AS_5222932 ------------------------------------------------------------
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+ 2BS_5163353 AGGCACCTACTGCCTTAGTGCTTTTTTTGCAAATAAGACTGTAATGCAACTGACTTACTT
230
+
231
+
232
+ 2BS_5245544 ------------------------------------------------------------
233
+ 2DS_5334799 ------------------------------------------------------------
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+ 2AS_5222932 ------------------------------------------------------------
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+ 2BS_5163353 GTTAAAGATCTTGTTTGTGTATATCTTGCTCATTTGCCTCTCCATCGGTAAATACGTTAG
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+
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+
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+ 2BS_5245544 ------------------------------------------------------------
239
+ 2DS_5334799 -------------------------------------GCGACACCTGGACCAGCGGCGAG
240
+ 2AS_5222932 ------------------------------------------------------------
241
+ 2BS_5163353 CAATTTTGGCTGCTTTAGCGCGGTGGTAGCTTCTTGCTGCAGCTCAGATCCCAGAATTTT
242
+
243
+
244
+ 2BS_5245544 ------------------------------------------------------------
245
+ 2DS_5334799 TTGTACCGCAGGCCGGGGCCGGGCGGCGCCTCCGTCCCCTGCTCCTGCTCCTGCGGGGAC
246
+ 2AS_5222932 ------------------------------------------------------------
247
+ 2BS_5163353 TTGTTGCAAAGCTGTGTACTGCTTGACAAACTGTAGCAATGAGTTGCCAGGGCTCACGTA
248
+
249
+
250
+ 2BS_5245544 ------------------------------------------------------------
251
+ 2DS_5334799 CCGGCCTCCGGCAGCTCCGTCGACACGGCCATTTCGTCACTCTGAACGGGCGGGCCGGCG
252
+ 2AS_5222932 ------------------------------------------------------------
253
+ 2BS_5163353 CCGCTTCAAAACAGCATTGAACCCCTCGCTGCACTGCGTAGTCTGCAGAAAGGGAAAGAA
254
+
255
+
256
+ 2BS_5245544 ------------------------------------------------------------
257
+ 2DS_5334799 GAGGGGAGTGAGGACGGCAGGTGGGTGGGTGGAGACAAATCGGCGGAGACGAAGGCGAGG
258
+ 2AS_5222932 ------------------------------------------------------------
259
+ 2BS_5163353 GCACTGCATGAAGTAGACTGGCACCCAGTACATTCGCTTCTCCCACAGGTTAGCAAGCAT
260
+
261
+
262
+ 2BS_5245544 ------------------------------------------------------------
263
+ 2DS_5334799 TGGAAGACGATCGGCGGAGGTGGCGGTATTTATAGATGGGATCTTGGTGGCTCCTCTGTT
264
+ 2AS_5222932 ------------------------------------------------------------
265
+ 2BS_5163353 CTTGTTGTCTTGGACTTGATATGTTTCAATCATGGCCATCCAGCTCCTTTCAAACTCCTC
266
+
267
+
268
+ 2BS_5245544 ------------------------------------------------------------
269
+ 2DS_5334799 TGATTCTGTTGCCAAGGGGGAGAAAGAGACGGCGACATTGAGGACGAGCAGAGGGCGACA
270
+ 2AS_5222932 ------------------------------------------------------------
271
+ 2BS_5163353 CACCGTCAAGTTGTGGTCCATGCACAGCTCGAACGCCTTGTGGAGCTCTGGACGGTCAGC
272
+
273
+
274
+ 2BS_5245544 ------------------------------------------------------------
275
+ 2DS_5334799 TTTGGAGCATCATTAGTCAGTGATGATTGCATTTAATCAGTATATTTGGGAATTTAATTA
276
+ 2AS_5222932 ------------------------------------------------------------
277
+ 2BS_5163353 AAAGAACGGTCCTAGCGTCTCTTCAGCCCTCTTTATAATGTGCCACCTGCAGTGCCTGTG
278
+
279
+
280
+ 2BS_5245544 ------------------------------------------------------------
281
+ 2DS_5334799 CTGCCCATTTATCAGTTCAGATATGTACATCGTCTTTAATGTGGATATTTATTTGAGGGA
282
+ 2AS_5222932 ------------------------------------------------------------
283
+ 2BS_5163353 CACTGCCAACGGAAATACCTCCTATATGCCTGCACGCATGCTGAAATCCTGGTCTGTTAT
284
+
285
+
286
+ 2BS_5245544 ------------------------------------------------------------
287
+ 2DS_5334799 GTAATAAGCAAAGATTGTTACAGAGTTTTTCCTTTTTTTTTTGAAATTTTCGAAAATATG
288
+ 2AS_5222932 ------------------------------------------------------------
289
+ 2BS_5163353 TATGTTCATCGGAGCAAGTCCATCCATGCACTCCAAGAAGGTCTTGAACAACCAAACGTA
290
+
291
+
292
+ 2BS_5245544 ------------------------------------------------------------
293
+ 2DS_5334799 TTCGACGTGGCAAAAAAAAAGACCGTAATAGCTGGCGAACGTTCGTTGTGAGGGGTGGTA
294
+ 2AS_5222932 ------------------------------------------------------------
295
+ 2BS_5163353 CCCATCCGTGTCTTCGTTCCGAACGAGCCCGCAGCCGAACTGCAATGACTGATTGTGGTT
296
+
297
+
298
+ 2BS_5245544 ------------------------------------------------------------
299
+ 2DS_5334799 TTGCGAACATTTTTGCTGACAGTTTTTTCAGAGACACATGACAATTTTTTTAGATACGCA
300
+ 2AS_5222932 ------------------------------------------------------------
301
+ 2BS_5163353 ATTTATTCCTATGAACGGAGCGCATGGCATCTTGTACATATTAGTCAGATACATCGCGTC
302
+
303
+
304
+ 2BS_5245544 ------------------------------------------------------------
305
+ 2DS_5334799 TGACGGTTTCTGGAAAGAAGACTGCGGCAAAAACAAGCAGAATTAGCCATCTCCTACCAC
306
+ 2AS_5222932 ------------------------------------------------------------
307
+ 2BS_5163353 GAATGAAATGCAATCTCGAAAATGTTTGTAGGCTCTCCTTGCAGCACCATCCACCCAATA
308
+
309
+
310
+ 2BS_5245544 ------------------------------------------------------------
311
+ 2DS_5334799 CTAAAAATGCCTTAAGAAATTGTTCGCTTGTCACCCTCCTCCCAGGAAACGTTCGCTTGT
312
+ 2AS_5222932 ------------------------------------------------------------
313
+ 2BS_5163353 CATGTTCCTGACACGGTCCTCATCGTCCAATCTTATCCTGTAGAAGAAATCTGGATCTTC
314
+
315
+
316
+ 2BS_5245544 ------------------------------------------------------------
317
+ 2DS_5334799 TAGTATTTTTGAAAGAAAAGGGCCCCACTCAAATTTTGGATCTTTTTGTTTCCATTCATT
318
+ 2AS_5222932 ------------------------------------------------------------
319
+ 2BS_5163353 CTTCGCTTTCTCATCGAAGTAGGCCATTGTGACCTCTATGTCAGCAAGCTTGCTCTCTCT
320
+
321
+
322
+ 2BS_5245544 ------------------------------------------------------------
323
+ 2DS_5334799 CGTTTTGGAGCGGTGTAGGGGAGACAGACGAATTTTGAAGATAGAATTTGTGACATTTGG
324
+ 2AS_5222932 ------------------------------------------------------------
325
+ 2BS_5163353 ATGGTACTTGGCCTGTAGGTTTGTGACGTCAGCTGGTATGTACGGCATGCTACTCAGTTT
326
+
327
+
328
+ 2BS_5245544 ------------------------------------------------------------
329
+ 2DS_5334799 TTTGGAGCATCATCATCATCGCCAATTGGAATGCACACTGAATTAAATTTTGCGAGATAT
330
+ 2AS_5222932 ------------------------------------------------------------
331
+ 2BS_5163353 CCCCTTTTTGCTGGATGAGTGATAGTATCTGGACCATTCTTGATGGACCGATGTTACAAT
332
+
333
+
334
+ 2BS_5245544 ------------------------------------------------------------
335
+ 2DS_5334799 GGCATTCTATTTTCATAAGTTCTTATTACAAATCATCATGATCTCCATAACACATACGCG
336
+ 2AS_5222932 ------------------------------------------------------------
337
+ 2BS_5163353 CATGTAGCAGCTTTACGAATTGCCTTTCGACTGGGGTGAACCCTCTGTGGGCGGTCAGAA
338
+
339
+
340
+ 2BS_5245544 ------------------------------------------------------------
341
+ 2DS_5334799 AGTTGGAAGGAGA-------TTTGTGCACACACGAGATGAGCCGACAGAGATGAGAAGGG
342
+ 2AS_5222932 ------------------------------------------------------------
343
+ 2BS_5163353 ATTTGACCAGATCAAACTTCTTTATGAGTTTGTGGTTGTGCTCGTCAAAATACTCAGTGA
344
+
345
+
346
+ 2BS_5245544 ------------------------------------------------------------
347
+ 2DS_5334799 GTGAAAGATAGGAGAGTCGAATATGCCGATTTGAAGAATCACCAAACTACATATAGTAAA
348
+ 2AS_5222932 ------------------------------------------------------------
349
+ 2BS_5163353 CCACATATTGTGTTCCATCTATGTTTAGCTTACACCGGACAGGGCAACCCGTCTTGAGAA
350
+
351
+
352
+ 2BS_5245544 ------------------------------------------------------------
353
+ 2DS_5334799 CAATTATTAATTTTCATGAGGGATATTCCGGCATTTTAACAATGGTTGCTAGGTACTAAG
354
+ 2AS_5222932 ------------------------------------------------------------
355
+ 2BS_5163353 TGATCCCTCTCTTTCGTTTCGGAACGACAGGCGCAACACCTTTCCCTTTCTTGTTCCTTC
356
+
357
+
358
+ 2BS_5245544 ------------------------------------------------------------
359
+ 2DS_5334799 GATTTCTTTTCTGTGGGACTTGGCAGTCCTTCCACTCAATTTGTTCAACACACAAGTGGG
360
+ 2AS_5222932 ------------------------------------------------------------
361
+ 2BS_5163353 GTACCTTGTGGCACCACATCTCACCTCTGTTGTACTCATTAGTTTTCTTAATTTTTCTAT
362
+
363
+
364
+ 2BS_5245544 ------------------------------------------------------------
365
+ 2DS_5334799 TATATATATGGCAGATACGGTAT--AATATAAGACACAAAGGCACAGAAGAGGATTTGTG
366
+ 2AS_5222932 ------------------------------------------------------------
367
+ 2BS_5163353 GGTATTCGGTGTTGACGGCAAACCCATGAAACTTTGCATATGTCTGGTAGAATTCCTTTG
368
+
369
+
370
+ 2BS_5245544 ------------------------------------------------------------
371
+ 2DS_5334799 GCTCTCGGGTGCCACGCACCCCTATATGAATATAGCATTAAAAACATATTGCAAATTTTA
372
+ 2AS_5222932 ------------------------------------------------------------
373
+ 2BS_5163353 CTTCTGCAAACGATTCAAATCTTTGCCCAACATATGGTGGCTGAGGTACCATGATATCTG
374
+
375
+
376
+ 2BS_5245544 ------------------------------------------------------------
377
+ 2DS_5334799 AAAAATTCTAAAATTTTGGAATATGAACCTGGGTGCCTGTTGTACACTCGTCTTCAACTT
378
+ 2AS_5222932 ------------------------------------------------------------
379
+ 2BS_5163353 GTTGCCCATCATCTTCATCCCCTTATGCCTCGTCGTCAGTTTCATCATTCATTTCAGTAT
380
+
381
+
382
+ 2BS_5245544 ------------------------------------------------------------
383
+ 2DS_5334799 CGTGGGGAATGAGTGCCCGTGTTCATCTCAGTAAAAAGGACAAAAAAAATCGTATGTATA
384
+ 2AS_5222932 ------------------------------------------------------------
385
+ 2BS_5163353 CGGCAGCAGTTTCATCGATTCAAAGGGGTGGCTGTGGGAATTGCTGGAATGATTGCCATT
386
+
387
+
388
+ 2BS_5245544 ------------------------------------------------------------
389
+ 2DS_5334799 GAAAAAGATAATTGGATGTAATGTATGTCAGACCGGAACTCCAGTGCCATGGATACCACG
390
+ 2AS_5222932 ------------------------------------------------------------
391
+ 2BS_5163353 TCTGACACTGACTCGGCATTATTTGCGGCATGATTGTCTGCTGGCTGGGGGAACGCGTCT
392
+
393
+
394
+ 2BS_5245544 ------------------------------------------------------------
395
+ 2DS_5334799 GGCAACCATTCCCAGCGAAAATGAAACAAGTGTGCAATCAATGGTCACCTAGGTTTGATA
396
+ 2AS_5222932 ------------------------------------------------------------
397
+ 2BS_5163353 TCTGTGCGCTCAGAGCTTCCCGCAGTAGATGTGCCCGCGCCGCTGTTCACTGTAGTTGTA
398
+
399
+
400
+ 2BS_5245544 ------------------------------------------------------------
401
+ 2DS_5334799 TCCTAAAATATCTGATTTTTGTGAAATTTTCTGATATTTTCTTAATGCTAGTTTCATATA
402
+ 2AS_5222932 ------------------------------------------------------------
403
+ 2BS_5163353 GGCCCTGTAATGGAAAAAACAGGTACGGGAGTAAGATTTTTTGTTTGAATAACATGTTTA
404
+
405
+
406
+ 2BS_5245544 ------------------------------------------------------------
407
+ 2DS_5334799 GGGGTACGTGACACTCGGGTGCTCCAATGCATTTCCCACAAGGGCACACGACCTTATCCC
408
+ 2AS_5222932 ------------------------------------------------------------
409
+ 2BS_5163353 TCGCAACGGATGACATTAACGTCGAGTGATTTGGCATTACATCATTCGAATAGCAAGATG
410
+
411
+
412
+ 2BS_5245544 ------------------------------------------------------------
413
+ 2DS_5334799 TGTCAAAAGACTCATCCTACATTGATAAATATGACTTGGCAGTGGGGCCAGCAACAGCAA
414
+ 2AS_5222932 ------------------------------------------------------------
415
+ 2BS_5163353 TCAGTTTGCGCGTGGACATGTGTAGCAAATGTAGCTGTCTAGTCATGGCAGTTACAGTTC
416
+
417
+
418
+ 2BS_5245544 ------------------------------------------------------------
419
+ 2DS_5334799 GATGAGCGTCCCAACATCCCCTTGTTCTTTCTTTGGAGGATCGATGTTCCTCCATCCAAC
420
+ 2AS_5222932 ------------------------------------------------------------
421
+ 2BS_5163353 AACAAACATGGCAACCACTGTTTGCCAATGCACGACAACAAGCTCCTTTTTTTAGTACGA
422
+
423
+
424
+ 2BS_5245544 ------------------------------------------------------------
425
+ 2DS_5334799 ATTGCTTGGTTGATTGCCACAAGGACGCAGGGCTGAGATTCTCGGTCCTGGGATTTTGGA
426
+ 2AS_5222932 ------------------------------------------------------------
427
+ 2BS_5163353 AGACTTGGGTTCTATATGCATGGCAGCTGCAGTCCTGCATTCATGCAAACACTGCTACCA
428
+
429
+
430
+ 2BS_5245544 ------------------------------------------------------------
431
+ 2DS_5334799 ATTTTGCTCGCAACTTGCAGCGCAGCTGCGTCCCTGTCCTTCCTAGTGAATCACCTTCGC
432
+ 2AS_5222932 ------------------------------------------------------------
433
+ 2BS_5163353 ACAAATGGCAATCACTGTGTTCTAGCAACAAAACTACTGCATTATAAGATTGATCTCACT
434
+
435
+
436
+ 2BS_5245544 ------------------------------------------------------------
437
+ 2DS_5334799 CCGTTGTTTGGGGCATAGGACAAATACACCCAGCTAATCATAGATTCATAGGGAGGGGGT
438
+ 2AS_5222932 ------------------------------------------------------------
439
+ 2BS_5163353 AGGCGAAATGTGTTCAACCATTAGTGATGCATACATGCTTTTAGCAGTTGGCAATTTTTC
440
+
441
+
442
+ 2BS_5245544 ------------------------------------------------------------
443
+ 2DS_5334799 CATAATCCTGGCTAGCTTTCACCGTTAGCGGCAGCTAGCTGGTTAATCATGCAGGCTCAC
444
+ 2AS_5222932 ------------------------------------------------------------
445
+ 2BS_5163353 AAAGACAATACATGACTCATTTTGCACGCAACCACTTTTCAGTGTTTTATGCTTCGTTCT
446
+
447
+
448
+ 2BS_5245544 ------------------------------------------------------------
449
+ 2DS_5334799 ACGAGGCTAGCGGCCCCCTAGTAGAGTCCAAAATGGACCTTTCCTCTGTTTTACCATCTC
450
+ 2AS_5222932 ---------------------------USERSRAMIREZRDOCUMENTSPHDDATABASE
451
+ 2BS_5163353 TGTCCACCATCACTGCTTCAATTCTTTTTTTGGCACGTGCTTTTTTTTGCCACCAAAACA
452
+
453
+
454
+ 2BS_5245544 ------------------------------------------------------------
455
+ 2DS_5334799 CGTCTGAGAAAGTGACAAGATGTGGCATCTTAGTAGTTGTTGTTAACTGCAGAATGCTCC
456
+ 2AS_5222932 SIWGCSAS-AB-K-CONTIGSFALONGERTHANFA-CAACAACAACAACAACAACAACAA
457
+ 2BS_5163353 AATGT-AGTGCTG-TTTTGTGGTTCAGTTTTTTTCCTTACCTTGTTGTGCTGCATGTGAC
458
+
459
+
460
+ 2BS_5245544 ------------------------------------------------------------
461
+ 2DS_5334799 CACCATGAAACCTTTGATTTTCATTCTAAAAGGACACCTTCGATTTTCCGAAAAAATGAC
462
+ 2AS_5222932 CAACAACAACAA-CAACAACAACAACAACAACAACAACAACAACAACTAAAAGATATCG-
463
+ 2BS_5163353 CATCTTGTGTGGTCTGTGACACCAAAATGACGTGCTCCACCTGCAATTTGTGAATCTTGC
464
+
465
+
466
+ 2BS_5245544 ------------------------------------------------------------
467
+ 2DS_5334799 ATTGCGATATTTCCTCCCTTTGCGAAAGTGGGGGCGATTTGGGGATGTGTTCGTAGGATC
468
+ 2AS_5222932 -GGGAGGCGGATACACAGCTTACATCACACCCCGTGC-T---ACAAGCA-ACTAAAGATT
469
+ 2BS_5163353 CACGAGACGTTTGCCCGGTTACCACCACTGTAATAACGT---GTAAGCATAGTAGTGGTT
470
+
471
+
472
+ 2BS_5245544 ------------------------------------------------------------
473
+ 2DS_5334799 AGCAGAGTGCGAGTGTCCTCACTACTTAGTGGACTAGGAACACCAATTACCATTCAGCAT
474
+ 2AS_5222932 GGAAAA-----AGAGAAGCCCGGTCGCA-TAGTGAGAAGTCTTCCATCTCGAAACATGTG
475
+ 2BS_5163353 GGTCAATTCATGGCAAATGCAGTTTGTGCTAGCACGGGAACTGTAGTTGCCCCTGATGTG
476
+
477
+
478
+ 2BS_5245544 ------------------------------------------------------------
479
+ 2DS_5334799 GGATGGTGGGCTATCTC--AAAAACAATGAACAAAGACTAGGAACACCAATTTTTAGGAG
480
+ 2AS_5222932 CGAAGAAGAAGATCGC---CAAGGGAAATGCCA----ACTGACTTGGCAACAAAC----T
481
+ 2BS_5163353 GCAACTGCAATTTTCCTGGCATGGCAACTGTAGTTGCATTGGTATGGCAACTGCAGTTGT
482
+
483
+
484
+ 2BS_5245544 ------------------------------------------------------------
485
+ 2DS_5334799 TGTCAGCTAGCTGGTTAATCATGCAGGCCAACACGAGGTTAGGAGCTCCCTAGAGTCTAG
486
+ 2AS_5222932 CCCCGTACGCCGACCCTGAGACACAAGAAGACGCCACACCCCCTACACCCTCACTGAAGG
487
+ 2BS_5163353 TCCTCCATGGCAACTACAATTGTCATGGCATAACAACTGCAGTTACACTGGCATGGCAAC
488
+
489
+
490
+ 2BS_5245544 ------------------------------------------------------------
491
+ 2DS_5334799 AATAGATCATTTTCTCCGTTTCACTACCTTTATCTCACAACACAAAACATTTTTAAGAGT
492
+ 2AS_5222932 AGGACTTTACCCCTCGTCCTAGCT---------CAAAGGACGCCGCACCATTGAGCGAGG
493
+ 2BS_5163353 TGCAGTTCTTCCTCCGTGGCAACTGCGGTTGTCCATAGATGGCAACAACAGTTGTCCAGG
494
+
495
+
496
+ 2BS_5245544 ------------------------------------------------------------
497
+ 2DS_5334799 CGTAATGATCGGAAGACGAATGCCACACATGACACCCTTGTTTTTCCTTGCGAAATACA-
498
+ 2AS_5222932 GATGTGTTCAAC-----CTAGAACAGGAATGGTGTGGTCTTGAGGTCACAGGAGCCGAG-
499
+ 2BS_5163353 GATGACAACTGCAGTTATTTAACCATGTCAATTGTAGATGTCCAGTCATGGAAAGTGCAA
500
+
501
+
502
+ 2BS_5245544 ----------CGCCACTGCCTCCAATTCA-------CACATTCATGAAGTTCCGGATGTA
503
+ 2DS_5334799 -CATGACATTCGAGCCCCCCTCCAACTCA-------CACATTAATGAAGTTCCAGGTATA
504
+ 2AS_5222932 ----CACATACACGCGACCCGCCACACCGCAGCGGGCAAACCATGGTGGCCATGAAGAAA
505
+ 2BS_5163353 TTGTCAACCATGCTCCTTCTGCTAATTGAGCATCCGCAACTTCACTTTTTTATGGACTCA
506
+ * * * ** *
507
+
508
+ 2BS_5245544 GTTTTGGTCAAGTTTGAACCCATTTTT-----CCCTTTCAAAAGTCTTCATTACAAGTGT
509
+ 2DS_5334799 GTTTTGGTCAAGTTTGAACCCATTTTT-----CCCTTTCAAAAGTCTTCATTACACGTGT
510
+ 2AS_5222932 CGTCCGCACAATGCCTGGAACAAGAAGGGGGAACCTGTAGGAGAGGTTCACGGAAATCGA
511
+ 2BS_5163353 CCTGTGTATGACGTCGATGGCAGGTACATGGGTGCTGCCTGAT-GCCACGTGCTGCATGA
512
+ * * * ** ** * * *
513
+
514
+ 2BS_5245544 GAAGATCTCTGTCTATA--------GATTTGCCTAAAATGTACATTCATACATTCTGCTA
515
+ 2DS_5334799 AAAGATCAGTATCTATA--------GATT-GTCTAAAATATACTCGTAAAGA--------
516
+ 2AS_5222932 AGAAGCGGCAAGCT-CAAGGCGGACAACAAGCACACAATATAAGCACAAGGAAGAAGGAC
517
+ 2BS_5163353 AGGCTCTGCATTTTTCACCCCTGATAACTCGTGAGTCCTTTTGCCATTTTTTTGCATGTT
518
+ * * * * * *
519
+
520
+ 2BS_5245544 GGTTCTACTCCCTCCGTCTCAAAATAAGTGACTCAACTTTGTACTAGCTCTAGTATAAAT
521
+ 2DS_5334799 --------------------AATATAAG------AGCGTTACAGAGG-----GAGCACAT
522
+ 2AS_5222932 CGGGTAACTACATGCCGCCACGAACAAACGTCGGGAAGGGGAACCCTTTCCCCTC-CCAC
523
+ 2BS_5163353 CATTT---TTCATGTCCACACCAATATGTGCTCTTTTTTCGTATGCATTACCTTGATTAG
524
+ * * * *
525
+
526
+ 2BS_5245544 TTGTACTAAGCTCAAGACACTTATTCTGGGACGAAGGGACTATAATGTAATTATATATTG
527
+ 2DS_5334799 TCATA----------------TATTCTGTTAGG---------TTTTATAGTTATATATCG
528
+ 2AS_5222932 CCAGGTTCAAGGGT--------GATGAACCACCGACGAATAGGGCAGCG--AATACCTC-
529
+ 2BS_5163353 CCATATTAGCTAGTTG-----AAGTTGGCTACCCGTACATTTGTCAGTGTTAGCGCCTTG
530
+ * * *
531
+
532
+ 2BS_5245544 CGGGAGAAAATAATAGTCACATTTATGTGTG-TCTTTTTT--CCGCGGGGGCACATTTTA
533
+ 2DS_5334799 TGGTAGAAAGTAATAGTCACATTTATGTGTG-TGTTTTTTTGTTGCGGGGGCACATTT-A
534
+ 2AS_5222932 --ACTGAAGATAGTATACTCAACGCTTCACA-CAAACTGTCGCTCGAAACCCACAACAAC
535
+ 2BS_5163353 TGACTGAACTTGCCACGGGGGCCCCCTGAGAGTGTTTTGGTCATAAGAACCTGCGAAAAA
536
+ *** * * * *
537
+
538
+ 2BS_5245544 TGTTT-TCTTGATTGTGTGGATGTGCAAAACGCCATCTTTTTTCGGAGACAAGCACTTCA
539
+ 2DS_5334799 TGTTT-TCTTGATTGTGTGGATGTGCAAAACACCATCTTTTTT-GGAGACAAACACTTCA
540
+ 2AS_5222932 CACAA-AATTAACCACATGGCACCACACACCAGCCTC-TCCTTGCCAA-------ACGAC
541
+ 2BS_5163353 AATGACAATGCATGACATAA-GTAGAATGTCATCTTCATCGTTACGAAGATGGCAACTGT
542
+ * * * * * * ** * ** *
543
+
544
+ 2BS_5245544 ACTCCCCCTCTTTTGGGGGGATGGAAAGATATAGATGAGAAATT----TTTGGCTGGCTA
545
+ 2DS_5334799 ACTTCCCCTCTTTTTGGGGGATGGAAAGATATAAATGAGAAATT----TTTGGCTGGCTA
546
+ 2AS_5222932 TCCCCCAGGGAGGTAACAACACCGAGCGTCGCCGCCGCCGCATC--CACAGGGATAACAG
547
+ 2BS_5163353 TCTCTTCTTTTTGTTATCACGCGTCATACCAATGTCTGCATATTGTTCTAGTAGTGGCAG
548
+ * * ** * *
549
+
550
+ 2BS_5245544 TGACATGCCCGG----------------TTGGAGTTTTGCTCCCCAAAAGTCTTCACATG
551
+ 2DS_5334799 TGACATGCCCGGATG----AAGGCCCCGTTGGAGTTTTGCTCCTCAAAAGTCTTCACATG
552
+ 2AS_5222932 GAATTAACCTTGGGTCAAAGAAGAGGGGTAAGGAGAAGGGATCACGTCGGTGCCTCCAAG
553
+ 2BS_5163353 CAAC-GGCCCTGCAGAGATGAGTTGACTGTACTCTGATGCATCCCAAGGGGGCGTTTCTG
554
+ * ** * * * * * *
555
+
556
+ 2BS_5245544 ACCTC-----ACTCCATGGAGTCATGGCAGCT---TGGTGCAGTCGATGCCGACGTTGCT
557
+ 2DS_5334799 ACCTC-----ACGCCATGGACTCATGGTAGCT---TGGTCCAGTCGATGCCGACGTTGCT
558
+ 2AS_5222932 GAGGGGAGCAGCGCCAGCAGGCGGTGTCACCGACGTGGTCGGCCAAGCCACCAAAGGATT
559
+ 2BS_5163353 GCCTTTGAGAACCCCAAGTATCAGCGCCATCTTTGTGATTCATTCTTTCCGTGTCTCACT
560
+ * *** * * * ** * *
561
+
562
+ 2BS_5245544 CGTGACGAATCATCTTTCTCTCCATGCCTAGATTCCAACACAAATTTCAGGTTCACCTCA
563
+ 2DS_5334799 CATGATGAATCATCTTTTTCTCCATGCCTAGATTCCAACACAAATTTCAGGTTCACCTCA
564
+ 2AS_5222932 TCTCTCGAACCCAACTCACACCAC--CATGCCCGGCGATACAAGATC--ACCAC-CACGA
565
+ 2BS_5163353 TCTTTCCAATATGTTCTCAATCACTGCATGATCAAGAACGCATCAAC--AATCCACAAGA
566
+ * ** * * * * ** * * *
567
+
568
+ 2BS_5245544 ACCTCTTCATTCCCCGGATTATGTGCGTGCGATCGAGACAGTTTTCACATGCCCGGATTA
569
+ 2DS_5334799 ACCTCTTCATTCCCCGGATTATGTGCGTGCGATCGAGACAGTTTTCACA-----------
570
+ 2AS_5222932 GATCCGGCCGGAAGTGGAC--CAAATGGGAAAAAGGAGTGACCTTCAGATATGACGCCAG
571
+ 2BS_5163353 ATTGTATTCTTCTGCTGCTTGCAGATAGGGATGGCAAGCAACAGGTCAACTAGGTGGCAG
572
+ * * *
573
+
574
+ 2BS_5245544 TGTACCTAGCCAAAAAAATAATAATAACGCTG--CGATTTTTCCGCGTTTCGCGATCATC
575
+ 2DS_5334799 ------------AAAAAAT---------GTTG--CGATATTTCCGCGTAT----------
576
+ 2AS_5222932 -----AAGAACCGCCGGAGCAGACCGCCGAC---CATGAACCGCACCTG-TCGTCGCCGC
577
+ 2BS_5163353 CTATTGACAACGAAAGGTGGCAACTGTCGTTGTACACAAGTGGCAATTAATTTTTCCCAC
578
+ * * * *
579
+
580
+ 2BS_5245544 TATGTTGCCTTCGCGTGTGTGTTCATATCAATTTCGCGTGTTCCACTCGCAATCATGCGT
581
+ 2DS_5334799 ------------------------------------------------------------
582
+ 2AS_5222932 ACTGCCCACACGGCTGAGGACGCCGACCCTCTCGTGTGAGCATCGCCAGCCGCGAAGACG
583
+ 2BS_5163353 CCCCTTTATTCCAAAATTGTCCTTCCTCTCCTTTTTTAGGGATTCCTACTCATCCATTTG
584
+
585
+
586
+ 2BS_5245544 GC--TGCCTTTGCATATATTCCAATCGAATTCGTGTGTTCCATTCCTAGGATCCAAAGAG
587
+ 2DS_5334799 ----TGCCTTTGCATATATTCCAATCGAATTCATGGGTTCCTTTCCTATGATCCAAGGAG
588
+ 2AS_5222932 GCGTCGCCTCTCCAAGAAGGTTCGCCGC-C---TGGAGCCCAAAGCCCTCCGCCGAGACC
589
+ 2BS_5163353 CC--TACCCAACTACTTGTGTCAATCAAAC---TAGGAACTTAAGTTAATCTCAACACGT
590
+ ** * * * * *
591
+
592
+ 2BS_5245544 GCCCTCCGAGAAGTCCACCTGTCAGCGCGACGATGACGATGACGACACGCCGGCTCTGTA
593
+ 2DS_5334799 GCCCTCAGGGAAGTCCACCTGTCAGCGCGACGACGACGACGATGATGCGCCGGCTCTGTA
594
+ 2AS_5222932 GGAGCGACGAAATCCCCGTTGCCACCTTCACCGTAG--GCTGCG-CGGGGTTGCCCGGCA
595
+ 2BS_5163353 AGATCACAAAACTACTGGATCTCAGAACTACTGGTGTTGCCACC-CCCTATAGCATGG-A
596
+ * * * ** ** ** * *
597
+
598
+ 2BS_5245544 GCAAGTGCCAGGTGCCCGCGCTCCATGGCTTGCAAGGCGATGATGCAGGCAAGAAAAATG
599
+ 2DS_5334799 GCAAGTGCCAGGTGTCCACGCTCCATGGCTTGCAAGGCGATGATGCAGGCAAGATAAATG
600
+ 2AS_5222932 ACCAGTGGCGGACCTAGAA---TCATAGGCTTGGGGGTGCCATAGTTCAATGTTCACATT
601
+ 2BS_5163353 TCCAGTACAAGATCGGGGAGATTTTCAGCCTGAAGGATGAGAAGGATGA--GATCGGGAG
602
+ * *** * * * * * *
603
+
604
+ 2BS_5245544 A---------GTCAATAGTAGCAGAGCTTTCTCCTCCCGTGGAGTGCACAGACAGACAAT
605
+ 2DS_5334799 AATAGCACAAGTCAACAGTAGCAGAGCTTTCTCCTCCCGTGGAGTGCATAGACAAACAAT
606
+ 2AS_5222932 AA------ACGTCATCA-TAATCTCAATAAATAGTCTTAAAATAGCAACAACTTGATGAA
607
+ 2BS_5163353 AT------TTTTCACC--TGATTTTAGCTGATCGTCTCTGAAGGGCTGGATTGGAGTGGG
608
+ * *** * * ** *
609
+
610
+ 2BS_5245544 CTTTTGGAAACGGGGAGTTTTTAGATTAGACTTGGCGTGCAAGCGCCGGCGCTCCACATT
611
+ 2DS_5334799 CTTTTGGAGATGGTGAGTTTTCAGATTAGACTTCGCGTGCAAGCGCCGGCGCTCCACACT
612
+ 2AS_5222932 TATGTAGCGT----GAGGTATAGAGTAAAATTTATTTTACA---ACTTTGAAGGGGTGCC
613
+ 2BS_5163353 GGGCTGGGGCTGGGGAGGGTTGGGGTGTGGTTTGCGGTGGGTTTGCCCTACGAATCTGCT
614
+ * * *** * * ** * *
615
+
616
+ 2BS_5245544 TTTTTTTTCTTTCAAGATCGCATCAGCTAAACCTAAACGGCCGGTCAAGAACTGACAAAA
617
+ 2DS_5334799 TTTGTTT-----CAAGATCGCATCAGCTA---CTAAACGGCCGGTCAACAACTGACAAAA
618
+ 2AS_5222932 T-GGCACCC-------ACGGCCTCAAATTAGTTATGGCGGT-GGCCAAGGTTTGATATCA
619
+ 2BS_5163353 TTGGTTTCC-------ATGGCAACCAGAGAAGGCCGGCGAC-GGAGGTAGGTGTTTGAGA
620
+ * * ** * ** ** *
621
+
622
+ 2BS_5245544 ACACGCCGGCGGTTCACACTAACTAAATCCAAACGTACACTCTCTTTTCCCTTGAGTCAA
623
+ 2DS_5334799 ACACGCCGGCAGTTCACATTAACTAAATCCAAACGTACACTGCTTTTTTCCTTCAGTCAA
624
+ 2AS_5222932 TCTTGGAATC-GTCCACGGGAGC--GATTCGG-TGACCAAGGTCTTTTCTGTAAACTAAA
625
+ 2BS_5163353 GGTGGGGGAC-GATGGCGGCAGTCGAGAGAGG-CGATCGAGCGAGGACGGGAACGGCTGG
626
+ * * * * * * *
627
+
628
+ 2BS_5245544 ATCACTAGTTTATCGAACGCCTGCAGTTCTCACCTCGTATACAAATAGCAGATTGTCACC
629
+ 2DS_5334799 ATCACTAGTTTATCGGACGCCTGCAGTTCTCACCTCTTATCTGAG-AATAGAT-------
630
+ 2AS_5222932 CTTATTCCCTATGCTGGC-CTTATCAATTCCGAGTTAATCAAACCCATCAAAATCGA---
631
+ 2BS_5163353 GTCGTGCGGGCAGCGGGT-CGTGTGG--CCCGGATGGAGCAGTGCGGACGGGGTTGCCAC
632
+ * * * * * *
633
+
634
+ 2BS_5245544 AGACAAGCACGGCGCACATACAACAATATCATATTCTAGTAAAAAAAACAACAACAGGGC
635
+ 2DS_5334799 ---------------ATATACAAA------------TAGCAAA-----------------
636
+ 2AS_5222932 --ATTGAAGGAGCAAATTGATAAAATACGATTTTCTGCTTTGACACATCATCA-----TT
637
+ 2BS_5163353 ACACCGGACGTGCGGGCTGTGCAATTGCGCGCCCGGACGCGGTCGTGCGGGCGGGTTCCT
638
+ *
639
+
640
+ 2BS_5245544 AGGCATATACTCCCTCCGTCCAAAAATACTTGTCATCAAAATAGATAAAAGAGATGTATC
641
+ 2DS_5334799 -----------------------------TCGTCACCA-----GGCAAGCACGGCGCACA
642
+ 2AS_5222932 GTTCTCCTTTGATGGAACATCTTGACCATCAAACATCCAC---ATTTAACCCCTTAAAAG
643
+ 2BS_5163353 GTTCACGCCACACGAGGCGTGTGGGCGGGTTCGTATCCAT---GCCACACGTGTGGCAGT
644
+ * * *
645
+
646
+ 2BS_5245544 TAGAACTAAAATATGTCCCATTTTGATGACAAGTATTTCCAGACGGAGGGAGTATA-TTG
647
+ 2DS_5334799 TACAATTA-----TATCATATTCTGGT---------------------------------
648
+ 2AS_5222932 AA-CAC-ATTCTACATTTAA-GCTAGCGCTTT---CTTCTG--------TCTTGC--CCC
649
+ 2BS_5163353 TATCGC-AACCCATAAAAAATACTAACAATTTATGCTTTTGACAATTCATCATGCTTCCC
650
+ * * * *
651
+
652
+ 2BS_5245544 TTAGGGTGTTGGAAGAAAAATATCATTGTAGCAGTATTGCT---GCCATACCAGCGTATC
653
+ 2DS_5334799 ------------AAGAAAAATATCGTCGTAGCAGTTTTGCTGCTGCCATACCAGCGTGTC
654
+ 2AS_5222932 CTTGCCAAAAACACAAGATATTCCACGCTGCCAAACACACCAATCGGAAAAAGGCAATTT
655
+ 2BS_5163353 CTTGCTAAAAGCACAAGATATTCCACGCTGCCTGACACGCGAAGCGGAAAA-GGCATTTT
656
+ * * * ** * * * * * * ** *
657
+
658
+ 2BS_5245544 ATGCGCTATACCGTGGCGCGCGACGGGAGC--GTGAGGGTTAGGGTTTATCATAGCGGGC
659
+ 2DS_5334799 ATGGGTTATACCGTGGCGCACGACGAGAGC--GTGAGGGTAAGGGTTTATCATAGCAGGC
660
+ 2AS_5222932 TCACT---TTTCATCGATTAGAAGCAGCTCCGAAAAGGAAAAGAAGCAACCATCTCTCCC
661
+ 2BS_5163353 TTTTTCACTTTCATCGATTAGAAGCAGCTCCGAAAAGGAAAAGAAACGACGAACTCTCCC
662
+ * * * * * * * *** ** * * * *
663
+
664
+ 2BS_5245544 TGAGC-GTTTCACCGGGGGCCCTCTGTTTTCACAGGCATGGACCGTGTATCAGAATATGT
665
+ 2DS_5334799 TGGGC-GTTTCACCAGTGGCCCTCTGTTTTCACAGGCATAGACCGTGTATCAGAATATGT
666
+ 2AS_5222932 CACCCCACCCCGGCCCTGCTCCCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
667
+ 2BS_5163353 CGT-----CCCGGCCCCGCTCCCCGCCACGCCAAGTCGACGGCCGCTCGCCGCCGCCCCT
668
+ * * * ** *
669
+
670
+ 2BS_5245544 ACAATTATTATGCCAAGACATGTAAAAGTAAATAAGGAAAGGAAGAGAATTTCCGCCAGG
671
+ 2DS_5334799 ACAATTATTGTGCTAAGAGATGTAAAAGTAAA-AGGAAAGAAAAGAGTATTTCCGCCAGG
672
+ 2AS_5222932 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN
673
+ 2BS_5163353 CCCTCCGCCGACCTCGGCCGTTCGGCCCCTCCCGCGGCTGGGGTGAACGGCGA-GCCCCC
674
+
675
+
676
+ 2BS_5245544 CGTAACTCTGATTCCCCC-GGCTCCTGCGGAAGACGA--CGACAGCCTCCTCATAGCCTG
677
+ 2DS_5334799 CGCAATTCTAATTCCCTCAGGCTCCTGCGGAAGACGA--CGACAGCCTCCTCATAGCCTG
678
+ 2AS_5222932 NNNNNNNNNNNNNNNNGTGGGCGGGGGTGAGTGGCGAGCCTCCCTCGCCGCCTTGCGCTG
679
+ 2BS_5163353 CTTGCTTCTCCTCTGTC------------------------------CTGCCCTGCACGG
680
+ * * * *
681
+
682
+ 2BS_5245544 CA----AACAGGGCGAAA-CGGTCAAATCATTGCAACTCTCTTTTACTTA------TTAT
683
+ 2DS_5334799 CA----AACAGGGCGAAA-CGGTCAAATGATTGCAACTCTCTTTTGTACAGGTAGTGCAT
684
+ 2AS_5222932 CACAGGAACAAGGCGAGAGCGATCGG--CGTCGGGATGCTGAGGCGGCGG-----CTGAG
685
+ 2BS_5163353 CA----AGCAAGGCGGGAGCGATCGG--CGTCGGGATGCTGAGGCGGCGG-----CTGAG
686
+ ** * ** **** * ** ** * * * ** *
687
+
688
+ 2BS_5245544 ATTAGATAGAAGAAGATGCCGGTATTGCTTAGTCA--AACGTGTCGAGAAACTAGCTACA
689
+ 2DS_5334799 CTTCATTAGAAGAAGATGCTGGTATTGCTTAGTCA--AACGTGTCAAGAAACTAGCTACA
690
+ 2AS_5222932 CTCCCTTCTCCTCCGATCCCCGTGCTCCTCCTCCGCCGTCGCTTCCTCCTACCAGCAGCA
691
+ 2BS_5163353 CTCCCTTCTCCTCCGATCCCCGTGCTCCTCCGCCGTCGCTTCCTCCTGCCACCACCAGCA
692
+ * * *** * ** * ** * ** ** * * **
693
+
694
+ 2BS_5245544 TGGAAAGGGTTCGGCGAGTCAGCTAGATGACAAAGTTAGCTACGTTGCAACCCCCTGGAC
695
+ 2DS_5334799 -GGCGAGGGTTCGGCGACTCAGCAAGATGACAAAGTTCGCAACGTAGCATCCTCCCGGAC
696
+ 2AS_5222932 --GCAGCACCTCCTCCTCCCCACCC-ACGCCGAGGTAACCCCCACGGTTCCCCTTTC-TT
697
+ 2BS_5163353 --GCACCACCTCCTCCTCCCCACCC-ACGCCGAGGTAACCCC-ACGGTTCCCCTTTCCTT
698
+ * ** * * * * * * * ** * * **
699
+
700
+ 2BS_5245544 CTCTTCTTCCTTATC-CATCAATCAACAAG---GCAGATGCTACTTTGTTCATTC--ATT
701
+ 2DS_5334799 CTCTTCTCCCTTATC-CATCAATCAACAAG---ACAAATGCTACTCTGCTCATT------
702
+ 2AS_5222932 TCCCTCCCGCGCATTTCGTCGAACGCCTCGCGCGCGCGCACAACGTGGCCGGACCGGATC
703
+ 2BS_5163353 TTCCTCCTGCGCATTTCGTCGAACGCCTCGCACGCGCGCACAACGTGGCCGGACCGGATC
704
+ * ** * ** * ** * * * * * * ** *
705
+
706
+ 2BS_5245544 TTGCTTGCCAGTTTGTCTTTCTTTATTGTGCACAATGAACACAAATGGCAAGGAT-CAGA
707
+ 2DS_5334799 TTGCTTGTCAGTTTGTCTTTCTTTATTGTGCGCAGTGAACACAAATGGCGAAGATTCAGA
708
+ 2AS_5222932 TGGCCTGCACTCCTTTCTCGCTCCGTTTGGT----TCAATGCGTGCCTGCCGTTCCTAGA
709
+ 2BS_5163353 TGGCGTGCTCGCCTCTCTCGCTCCATTGGGGG---TCAATACGTTCCTCTCGCTCCTAGA
710
+ * ** ** * *** ** ** * * ** * ***
711
+
712
+ 2BS_5245544 AATTCAGTCTCTTTCTACC----TACAAGCAATATCCTTTTGCTTATAGCGACGGCCTGC
713
+ 2DS_5334799 AATTCAATCCCTTGCCACCTACGTACAAGCAATACCCTTTTGCTTATAA--ATGTCCTAC
714
+ 2AS_5222932 TGCTCATCCGCCTG--ACTGTTTTCCTCGCAGAAACCGCCGGCCCTGAA------TCTGC
715
+ 2BS_5163353 TGCTCATCCGCCTG--ACTGTTCTCTTCGCAGAAACCGCCGGCCCCGAA------TCTGC
716
+ *** * * * ** * *** * ** ** * ** *
717
+
718
+ 2BS_5245544 CCTAGCTGCAATGGCAGGCTTGGTATAAA-GAACTCGTCATCACTTGTTAATGTATTGAA
719
+ 2DS_5334799 CCTGGCTGCAACGGCAGGCTTAGTATAAAAGAACTTGCCGTCACTTGTTAATGTATTGAA
720
+ 2AS_5222932 TCAGGCTCT--TCACATCCCTAGC-TGTACGTTTGTTCCCAAACCCGCATTCTTATTATT
721
+ 2BS_5163353 TCAGGCTCT--TCACGTCCCTAGC-TGTACGTTCGTTCCCAAGCCTGCATTCTTATTATT
722
+ * *** * * * * * * * * * * ****
723
+
724
+ 2BS_5245544 AAGTGTGGGTGCTGCAGCTTAGGCATT--TAATTGGAAGGGTTAGGATATGCTAAATATG
725
+ 2DS_5334799 AAGTGTGGGTGCTGCAACTTGGGCATT--TAATTGGAAGGGTTGGGATATGCTAAATATG
726
+ 2AS_5222932 TGTGACAACTAT-GCAGACTGCATGTGAATAATT-GGTGGTGTGTCCTCTGTTCATTCTG
727
+ 2BS_5163353 TGTGACAAATCTTGCAGAGTTCTTGTGAATAATTTGGCGATGTGCCGTCTGTTCATTCTG
728
+ * *** * * ***** * * * * ** * * * **
729
+
730
+ 2BS_5245544 TGAAGACTGAAAA-CTTTCAGAACTA----ATTTGGCACTAGAAAATGATATGCAAGCAA
731
+ 2DS_5334799 TGAGGACTGAAAAGCTTTCAGAACTTCAGTAATTGGGACTAGAAAATGATATGCAAGCAA
732
+ 2AS_5222932 TAGGGAACCGATGGGGACAGGCCGTTCATCGCTTTTGTCTTGGGTAGTTTTTCCCTGCTT
733
+ 2BS_5163353 TAGGGAAGCGATGGTGACAGGCCGTTCATCGCTTTCGTCTTAGGTAATTCTTCCCTGCTT
734
+ * ** * * * ** ** * * * **
735
+
736
+ 2BS_5245544 TCAGAAATCAGATGATGCAAGAATGTGCACCTCCTTCAGGAGAGCGGACATAGTCACAGT
737
+ 2DS_5334799 TCAGAAATCAGATAATGCAAGAATGTGCACCTCCTTCAGGAGAGCGGACATAGTCACAGA
738
+ 2AS_5222932 TTACTCCCAAAATGTAGCAGGATTGTTGTTTTCGTTCTTCGAAACGGAGGGCAAAGCTTT
739
+ 2BS_5163353 TTACTCCCAGAATGT---------------------------------------------
740
+ * * **
741
+
742
+ 2BS_5245544 ATATGAGAGGAATTCCGTGTCTTGAACATCAGGATTTACCTTAAGGTGGAAAACAA----
743
+ 2DS_5334799 ATATGAGAGGAGTCTCGTGTCTTAAGCATCAGGATTTACCTTAAGGAGGAAAACAA----
744
+ 2AS_5222932 GCAGGGTCGGTTTTACATTTATAAAGTTCCATGCATATCTGTGTAGAGTAAACCGAGGAA
745
+ 2BS_5163353 ------------------------------------------------------------
746
+
747
+
748
+ 2BS_5245544 --CTTGC--------------GAACTGCTTCAAA---------GATTTCATCTTCAGT--
749
+ 2DS_5334799 --CTTGC--------------GAACTGCTTCAAA---------GATTTCATCTTCAGT--
750
+ 2AS_5222932 CCCTTGCCTCAATGATAATCAGTGCTGTTTCACATTTATAATCGCTTTCGTCTTAGGTAA
751
+ 2BS_5163353 ------------------------------------------------------------
752
+
753
+
754
+ 2BS_5245544 ---------TCCCGTTGCGTTTATCTG----CATGGAGTTCAACAAGTACTCTTAGACAC
755
+ 2DS_5334799 ---------TCCCGTTGCGTTTATCTG----CATGGAGATCAACAAGTAGTCTTAGACAC
756
+ 2AS_5222932 AAAAATAAATCTACTAGTACTCCCCCAATATTGCAGGGTTGGTTTCACATTTACATACTC
757
+ 2BS_5163353 -------------------------------TGCAGGGTTGGTTTCACATTTATAAATTC
758
+ * * * * * * * *
759
+
760
+ 2BS_5245544 CCTAAAGGTCAAGTCTCGAAAATAAATAAGACATCCTACAGATCCTGAATACGAGTGATA
761
+ 2DS_5334799 CCTAAAGGTCAAGTCTCGAAAATAAATAAGACATCCTACAGATCCTGAATATGAGTGATA
762
+ 2AS_5222932 CATGCATAACCTGTGTAGAGTAAATTGAGGATCACTTCTATCA-ATGATAACCAGTGCTG
763
+ 2BS_5163353 CATGCATATCCTGTGTAGAGTAAACTGTGGATCCCTTCCCTCCCATGACAATAAGTGCTG
764
+ * * * * ** * ** * * ** * * *** * **** *
765
+
766
+ 2BS_5245544 TACAGAATATGTTACTGTGTTATATCCCTGATATGT-ACCCCTTCTGAAGAGATTAGCAA
767
+ 2DS_5334799 TACAGAATATGTTACTATGTTATATCCCTGATATGT-ACCCCTTCTGAAGAGATTAGCAA
768
+ 2AS_5222932 TTTCAAGTTGG--ATTGTGTTGTGGCGCTCAAATTTCAGTTGTTCACACGA-CTAATCAA
769
+ 2BS_5163353 TTTCAAGTTGG--ATTGTGTTGTGGCGCTCAAATTTCAAATGTTCACATGATCTAATCAA
770
+ * * * * * * **** * * ** * ** * * *** * ** * * ***
771
+
772
+ 2BS_5245544 TCTCTTCCAAAATGAGTGAATTGCAGACACTCATCTAATATCAAATAAATAGGCAGATCT
773
+ 2DS_5334799 TCTCTTCCAAGATGAGTGAATTACAGACACTCATCTAATATCAAATAAATAGGCAGATCT
774
+ 2AS_5222932 GATCCTGCATATAGGGGGACCTGGGAGTGGGAAAGGAACG-CAATGTAGTAGGATCGCTT
775
+ 2BS_5163353 GATCCTGCATGTAGGGGGACCTGGGAGTGGGAAAGGAACG-CAATGTAGTAGGATCGCTT
776
+ ** * ** * * ** * * ** *** * **** *
777
+
778
+ 2BS_5245544 CTGATCTCAC-TCCCCTCCCCACACCATAGAAAAATGGTCTTACGGTTATATGAATTCAG
779
+ 2DS_5334799 CTGATCTCAC-TCCCCTCCCCACAACATAGAAAAATGGTCTTACGGTTATATGAATTCAG
780
+ 2AS_5222932 CGGATTTTGGATTTGCTCATGTGAGTGCTGGTGACCTTCTACGGAATGAAATAGCTTCTG
781
+ 2BS_5163353 CGGATTTTGGATTTTCTCATGTGAGTGCTGGTGACCTTCTGCGCAATGAAATATCTTCGG
782
+ * *** * * *** * * * * * ** *** *
783
+
784
+ 2BS_5245544 AACATGA----GGGAATCGCATCCTGGC-TCTACCCCTCTG------TCCTATGACTCCC
785
+ 2DS_5334799 AACACGA----GGGAATCGCATCCTGGC-TCTGCCTCTCTG------TCCTATGATTCCC
786
+ 2AS_5222932 GCACTGATCATGGGTAATTCTTCTTTCCGTTTGATCCTCTGACA--GCCTTATAATGACC
787
+ 2BS_5163353 GCACTGATCATGGGTAATACCTCTTTCCGTTCAATCCTCTGATATAGCCTTATAATGACC
788
+ ** *** * * ** * * * ***** * *** * **
789
+
790
+ 2BS_5245544 AGGACATACTATCCTGCTATTTATACTTAGGTGACCCATATGTTTGAGGTTTCT---GAA
791
+ 2DS_5334799 TGGAAACACTATCCTGCTATTTATACATTGGTAACCCATATGTTTGATGTTTCT---GAA
792
+ 2AS_5222932 CACACGCACATGCATGGT-TCGGTGAATTGATTTTTCAGTTTCATGGCATTTGCCAGGGA
793
+ 2BS_5163353 CACACGCACATGCATGGT-TCGGTCAATTGATATGTCAGTGCCATGGCATTTGCCAGGGA
794
+ * ** * ** * * * * * * ** ** *** * *
795
+
796
+ 2BS_5245544 ATATATATTGGCATTTGTACATGTTCAAGAGAATAAGCCAGGTATAGTTTAATGCTGCAC
797
+ 2DS_5334799 ATATATATTGGCATTTGTAAAAGTTCAAGAAAATAAGCCAGGTATAGTTTAATGCTGCAC
798
+ 2AS_5222932 GTGGATCCTAGAGATAATAAGGGAA-GGGAGGATTGTTCCATCAGAGATAACTGTTGAAC
799
+ 2BS_5163353 GTGGATCCTAGAGATAATAAGGGAA-GGGAGGATTGTTCCATCAGAGATAACTGTTGAGC
800
+ * ** * * * ** * ** ** * * ** * * ** ** *
801
+
802
+ 2BS_5245544 C--TTAAGAGACCTTTTTAATCAACTTCTAGAACAAAGGGTAGAGCT--CTGTTTCC---
803
+ 2DS_5334799 A--TTAAGAAGCCTTTTAAATCAACTTCTAGAATAAAGGGTAGAGCT--CTGTTTCC---
804
+ 2AS_5222932 TCGTCAGAAAAGCAATTGAATCAAGCTCTGCTAAAAGGGTTCTTATTGATGGTTTCCCAA
805
+ 2BS_5163353 TTGTCAGAAAAGCAATTGAATCAAGCTCTGCTAAAAGGGTTCTTATTGATGGTTTCCCAA
806
+ * * * * ** ****** *** * ** ** * * ******
807
+
808
+ 2BS_5245544 -GTGTGAAGGAAATAAGAAAATGCATGTCAAAAA-GTAAAGGTACGGTTCA---TAAAAG
809
+ 2DS_5334799 -GTGTAAAGGAAATAGGAAAATGCACGTCAAAAAAGTAAAGGTACGGTTCA---TAAAAG
810
+ 2AS_5222932 GGTGTGAGGAAAACAGAATTGCCTTTGAAAAAATAGTAAGTTTTCTGTTTGGCTTGCATT
811
+ 2BS_5163353 GGTGTGAGGAAAACAGAATTGCCTTTGAAAAAATAGTAAGTTTTCTGTTTGGCTTGCATT
812
+ **** * * *** * * * **** **** * * *** * *
813
+
814
+ 2BS_5245544 AAAGGTACAAGAAGTGCTCCTGTCCAGGACACTCTGCG-TAAAATAAATAGATTAATTAC
815
+ 2DS_5334799 AAAGGTACAAGAAGTGCTCCTGTCCAGGACACTCTGCG-TAAAATAAATAGATTAATTAC
816
+ 2AS_5222932 ACTGGTCCAGAACTTTCTATTGATTGAAATAGTATGTGATGAGATGGATAAGTCCATGCT
817
+ 2BS_5163353 ACTGGTCCAGAACTTTCTATTAATTGAAATAGTATGTGATGAGATGGATAAGTCCATGAT
818
+ * *** ** * * ** * * * * ** * * * ** *** * **
819
+
820
+ 2BS_5245544 CTTGT---GTGCCTTTCCCCTTGAAGAGTAGTACTCAACAACAGGAAGAT--TCAAACTC
821
+ 2DS_5334799 CTTGT---GTGCCTTTCCCCTTGAAGAGTAGTACTCAACAACAGGAAGAT--TCAAACTC
822
+ 2AS_5222932 GTTCATCAGTTTCTGTTCAATTTTTGGGAAGG--CTAATAACAGGTGAATCTTCACGTTT
823
+ 2BS_5163353 GTTCAACAGTTTCTGTTCAGTTTTCGGGAAGG--CTGATAACAGGTGAATCTTCAAGTTT
824
+ ** ** ** * * ** * * ** * ****** ** *** *
825
+
826
+ 2BS_5245544 TCGAACACTTTTAGACGC-------------TTCTTGATTGTCTCAATGTTATC---ATC
827
+ 2DS_5334799 TCGAACACTTTTAGACGC-------------TTCTTGATTGTCTCAATGTTATC---ATC
828
+ 2AS_5222932 TCTAGCGCTCTTGGCTGTAACCATTTGTGTATACACACTTGTCTTTACATTTTT-ACGCC
829
+ 2BS_5163353 TGTAGCTCTTGTGACTGTAAC-ATTTGTGTATACACACTTGTCTTTACATTTTTTATGCC
830
+ * * * ** * * * * ****** * ** * *
831
+
832
+ 2BS_5245544 AACTCGT---CCCTAAGACGCATACATGAGATAATCGAAAAAAACAGAAACAAATAGAGA
833
+ 2DS_5334799 AACTCGT---CCCTAAGACGCATGCATGAGATAATCGAAAAAA-CAGAAACAAATAGAGA
834
+ 2AS_5222932 AATATGCTGGCCCAAAACTGCCAGTGTACAGTA--TGCAATCAGCAGTTTCTTATGCATG
835
+ 2BS_5163353 AATATGCTGGCCCAAAACTGCCAGTGTACGGTA--TGCAATCAGCAGTTTCTTATGTATG
836
+ ** * *** ** ** * ** * ** * *** * ** *
837
+
838
+ 2BS_5245544 GATCAATTTAATGTGATATATT-----TTATTTATTATTTTTAAAGGAAACTCCACTAGA
839
+ 2DS_5334799 GATCAATTTAATGTGATATATT-----TTATT-ATTATTTTTAAAGGAAACTCCACTAGA
840
+ 2AS_5222932 TATTTTCTTTTAGTAGCAAATCAGTAACTATGTCCTGCTCTAGAGTGATGCACTTTTAGG
841
+ 2BS_5163353 TATTTT-TTTTAGTAGCAAATCAATAACTATGTCCTGCTCTAGAGTGATGCACTTTTAGG
842
+ ** ** ** * ** *** * * * * ** * * ***
843
+
844
+ 2BS_5245544 GCATTAATGAATCTCCCATTATGATATGCACGAGCTACACTGATGAGATTAGTGTTTCTT
845
+ 2DS_5334799 GCATTAATCAACCTCCCATTATGATATGCACGAACTACACTGATGAGATTAGTGTTTCTT
846
+ 2AS_5222932 AT-TTATGCAGTAGTCCACAGT--TATGTCAGCCCCACTATGGTGGATGTATAGTTGCAT
847
+ 2BS_5163353 TT-TTATGCAGTAGTCCACAGT--TATGTTAGCCCCACTATGGTGGATGTATGGTTGCAT
848
+ *** * *** * **** * * ** ** ** ** *** * *
849
+
850
+ 2BS_5245544 CTCTTCAATTTAAATGA-CATATGAAGAAGAAAGAGCTACACTGATGAGATTAGTGTTTC
851
+ 2DS_5334799 CTCTTCAATTTAAATGA-CATATGAAGAAGAAA---------------------------
852
+ 2AS_5222932 CTCAACAACTACTACAAGCATTTATATCAAAGAA---------TGTGTGTGCTGTGGTCG
853
+ 2BS_5163353 CTCAACAACTAATACAAGCATTTATATCAAAGAAAA-------TGTGTGTTCTGTGGTCG
854
+ *** *** * * * *** * * * * *
855
+
856
+ 2BS_5245544 TTCTCTTCAATTTAGATGACATATGAAGAAGAAAATCATTTGTGGCAATCCAC--AAGGA
857
+ 2DS_5334799 ----------------------------------ATCATTTGTGGCAAACCAC--AAGGA
858
+ 2AS_5222932 GGCAATTAGAAGACACTGGCATACCAACTAAGATATGTTTCATTGTTGTCCACTCAATAA
859
+ 2BS_5163353 GGCAATAAGAAGACACTGGCATACCAACTAAGATATGTTTCATTGTTGTCCACTCAATAA
860
+ ** ** * * **** ** *
861
+
862
+ 2BS_5245544 ATATCCTTTAGGAATGTTAATATTTCATGTTA--GTTAAGAGAGAGGGAGTAATAAGAAG
863
+ 2DS_5334799 CTATCCTTTAGGAATGCTA-TATTTCATGTTA--GTTAAGAGAGAGGGAGTAATAAGAAG
864
+ 2AS_5222932 TTGCTAGTCAGATAGATGTAGATTGCATGATCCTGTTCTGATATGTTGACTCATAAATTT
865
+ 2BS_5163353 TTGTTAGTCAGATAAATGTAGATTGCATGGTCCTGTTCTGATATGTTGACTAATAAATTT
866
+ * * ** * *** **** * *** ** * ** * ****
867
+
868
+ 2BS_5245544 ATAATTGTCA--AAGCCGAAAGTAACGGCTGGGAAATAAAATCTTAGAAAAACACATATC
869
+ 2DS_5334799 ATGATTGTCA--AAGCCGAAAGTAACGGCTGGGAAATTAAGTCTTAGAAAAACACATATC
870
+ 2AS_5222932 CAGACTGGAACTGAACCAGACCTTGTGCTTTTCTTTGACTGTCCTGAGGATGAGATGGTT
871
+ 2BS_5163353 CAGACTGGAACTGAACCAGACCTTGTGCTTTTCTTTGACTGTCCTGAGGATGAGATGGTT
872
+ * ** * * ** * * * * ** * * *
873
+
874
+ 2BS_5245544 AAGTAAGTTCCGAATAAGAATTGAAAAATGTACAGTACT-TATATAGTGTATAAATA---
875
+ 2DS_5334799 GAGTAAGTTTCGAATAAGCATTGGGAAATGTACAATACT-TATATAGTGTATATATATCT
876
+ 2AS_5222932 AAACGTCTCCTAAGCCGTAACCAGGTTGGTCTTCGTATTATCTCTGGAGTAAATTGTGCT
877
+ 2BS_5163353 AAACGTCTCCTAAGCCGTAACCAGGTTGGTCTTTGTACTATCTCTGGAGTAAATTGTGCT
878
+ * * * * ** * * * * * *** *
879
+
880
+ 2BS_5245544 -GCACAATTTACTCCAGAGATAGTACAAAGACCAACCTGGTTACGGCTTAGGAGACGTTT
881
+ 2DS_5334799 AGCACAATTTACTCCAGAGATAGTACAACGACCAACCTGGTTACGGCTTAGGAGACGTTT
882
+ 2AS_5222932 AGATATATATACACTATATG-AGTACTGTACATTTCCCAATTCTTATTCGGAACTTACTC
883
+ 2BS_5163353 A----TTTATACACTATATA-AGTACTGTACATTTTTCAATTCTTATTCGGAACTTACTT
884
+ * *** * * * ***** ** * * * *
885
+
886
+ 2BS_5245544 AACCATCTCATCCTCAGGACAGTCAAAGAAAAGCACAAGGTCTGGTTCAGTTCCAGTCTG
887
+ 2DS_5334799 AACCATCTCATCCTCAGGACAGTCAAAGAAAAGCACAAGGTCTGGTTCAGTTCCAGTCTG
888
+ 2AS_5222932 CATATGTGATTTTCTGAGATTTTATTTCCCAGCCGTTACTTTCGGCTTTG--ACAATTAT
889
+ 2BS_5163353 GATATGTGTTTTTCTAAGATTTTATTTCCCAGCCGTTACTTTCGGCTTTG--ACAATTAT
890
+ * * ** * * * * * ** * * ** *
891
+
892
+ 2BS_5245544 AAATTTATTAGTCAACATATCAGAACAGGACCATGCAATCTACATTTATCTGACTAACAA
893
+ 2DS_5334799 AAATTTATTCATCAACATATCAGAACAGGACCATGCAATCTACATTTATCTGACTAGCAA
894
+ 2AS_5222932 CTTCTTATTACTCCCTCTCT--TAACTAA--CATGAAATAT-AGCATTCCTAAAGGATAG
895
+ 2BS_5163353 CTTCTTATTACTCCCTCTCTCTTAACTAA--CATGAAATATTAACATTCCTAAAGGATAT
896
+ ***** ** * * *** **** *** * * ** * *
897
+
898
+ 2BS_5245544 TTATTGAGTGGACAACAATGAAACATATCTTAGTTGGTATGCCAGTGTCTTCTTATTGCC
899
+ 2DS_5334799 TTATTGAGCGGACAACAATGAAACATATCTTAGTTGGTATGCCAGTGTCTTCTTATTGCT
900
+ 2AS_5222932 TCCTTG--TGGATTGCCACAAATGATTTTCTTCTTCATATGTCAT---------------
901
+ 2BS_5163353 TCCTTG--TGGATTGCCACAAATGATTTTCTTCTTCATATGTCATC--TAAATTGAAGAG
902
+ * *** *** * * ** ** * * ** **** **
903
+
904
+ 2BS_5245544 CGACCACAGAACACACATTTTCTTTGATATAAATGCTTGTATTAGTTGTTGAGATGCAAC
905
+ 2DS_5334799 TGACCACAGCACACACATTTTCTTTGATATAAATGCTTGTAGTAGTTGTTGAGTTGCAAC
906
+ 2AS_5222932 ------------------------------------------------TTAAATTGAAGA
907
+ 2BS_5163353 AAGAAACACTAATCTCATCAGTGTAGCTCTTTCTTCTTCATATGTCATTTAAATTGAAGA
908
+ ** * ** *
909
+
910
+ 2BS_5245544 CATACATCCACCATAGTGGGGCTAACAT-AACTGTGGACTACTGCATAAAACCTAAAAGT
911
+ 2DS_5334799 CATACATCCACCATAGTGGGGCTAACATTAACTGTGGACTACTGCATAAAACCTAAAAGT
912
+ 2AS_5222932 GAAGAA---ACACTAATCTAATTAGTGTAGTTCGTG------CATATCAAAATGGGAGGT
913
+ 2BS_5163353 GAAGAA---ACACTAATCTCATCAGTGTAGCTCGTG------CATATCATAATGGGAGAT
914
+ * * ** ** * * * *** ** * * * *
915
+
916
+ 2BS_5245544 GCATCACT-CTAGAGCAGGACATAGTTATTGATTTGCTACTAAAA-AAAATACATACATA
917
+ 2DS_5334799 GCATCACT-CTAGAGCAGGACATAGTTATTGATTTGCTACTAAAA-AAA-TACATGCATA
918
+ 2AS_5222932 TGATTAATGCTCTAGCGGAGTTTCCTTTCAAAA-------------ATATCACAT-TAGA
919
+ 2BS_5163353 TCATTAATGCTCTAGTGGAGTTTCCTTTAAAAATAATAAATAAAATATATCACAT-TAAA
920
+ ** * * ** ** * * ** * * * **** * *
921
+
922
+ 2BS_5245544 AGAAACTGCTGATTGCATACCGTACACTGGCAGTTTTGGGCCAGCATATTGGCATAAAAA
923
+ 2DS_5334799 AGAAACTGCTGATTGCATACTGTACACTGCCAGTTTTGGGCCAGCATATCGACGTAAAAA
924
+ 2AS_5222932 TTGATCTCTTTATT-GTTTTTGTTTTTT--CGATTAT---CTCATGTATGCGTCTTAGGG
925
+ 2BS_5163353 TTGATCTCTCTATTTGTTTCTGTTTTTTT-CGATTAT---CTCATGTATGCGTCTTAGGG
926
+ * ** *** * ** * * ** * * *** * *
927
+
928
+ 2BS_5245544 AT--GTAAAGACAAGTGTGTATACACAAATG-TTACAGTCACAAGAGCTACAAAACTTGA
929
+ 2DS_5334799 AAAAGTAAAGACAAGTGTGCATACACAAATGGTTACAGCCAAGAGCGCTACAAAACTTCA
930
+ 2AS_5222932 ACGAGTTGATGATAACATTGAGACAATCAAG-AAGCGTCTAAAAGTATTCGAGAGTTTGA
931
+ 2BS_5163353 ACGAGTTGATGATAACATTGAGACAATCAAG-AAGCGTCTAAAAGTGTTCGAGAGTTTGA
932
+ * ** * * * * *** * * * * ** * * * ** *
933
+
934
+ 2BS_5245544 AGATTCACCTGTTATCAGC--CTTCCCGAAAACTGAACAGAAACTGTTGAACATCATGGA
935
+ 2DS_5334799 AGATTCGCCTGTTATTAGC--CTTCC-AAAAATTGAACAGAAACTGGTGAACATCATGGA
936
+ 2AS_5222932 A--TCTTCCTGTTGTTGAGTACTACTCTTCAAGGGGAAAGGCACA---CAAGGTAATTAA
937
+ 2BS_5163353 A--TCTTCCTGTTGTTGAGTACTACTCTTCAAGGGGAAAGGCACA---CAAGGTAATTAA
938
+ * * ****** * ** * ** * * ** ** ** * ** *
939
+
940
+ 2BS_5245544 CTTATCCATCTCATCACATACTATTTCAATTAATAGAAAGTTCTGGACCAGTAATGCAAG
941
+ 2DS_5334799 CTTATCCATCTCATCACATACCATTTCAATTAATAGAAAGTTCTGGACCAGTAATGCAAG
942
+ 2AS_5222932 TCTATTTATTTTAT-GCCGAGTGTCCTGGACAGGAGCACTTCTTGTACCTTTCTTTTA--
943
+ 2BS_5163353 TCTATTTATTTTAC-GCAGAGTGTCCTGGACAGGAGCACTTCTTGTACCTTTCTTTTA--
944
+ *** ** * * * * * * ** * * ** *** * * *
945
+
946
+ 2BS_5245544 CCAAACAGAAAACTTACTATTTTTTCAAAGGCAATTCTGTTTTCCTCACACCTTGGGAAA
947
+ 2DS_5334799 CCAAACAGAGAACTTACTATTTTTTCAAAGGCGATTCTGTTTTCCTCACACCTTGGAAAA
948
+ 2AS_5222932 -TGAACCGTACCTTTACC-TTTTGACATGCATTTTCCTATTTCCTTCACAC----GGAAA
949
+ 2BS_5163353 -TGAACCGTACCTTTACT-TTTTGACATGCATTTTCTTATTTCCTTCACAC----GGAAA
950
+ *** * **** **** ** * * *** * ****** * ***
951
+
952
+ 2BS_5245544 CCATCAATAAGAACCCTTTTAGCAGAGCTTGATTCAATTGCTTTTCTGACAAGCTCAACA
953
+ 2DS_5334799 CCATCGATAAGAACCCGTTTAGCAGTGCTTGATTCAATTGCTTTTCTGACCAGTTCAACG
954
+ 2AS_5222932 CAG--AGCTCTACCTTCTGTTGTAGAAGTTGATCCAAAAGGCTTCTTAAT--GTGCAACA
955
+ 2BS_5163353 CAG--AGCTCTACCCTTTGTTCTAGAAGTTGATTAAAAAGGTCTCTTAAG--GTGCAGCA
956
+ * * * * * ** ***** ** * * * * * ** *
957
+
958
+ 2BS_5245544 GTTATCTCTGATGGAACAATCCTCCCTTCCCT-TATTATCTCTAGGATCCACTCCCTGGC
959
+ 2DS_5334799 GTTATCTCTGATGGAACAATCCTCCCTTCCCT-TATTATCTCCAGGATCCACTCCCTGGC
960
+ 2AS_5222932 TTAAACTATACCTGGCTTATTTTCTTGAACTTTTACAAATGCCAATATATATT---TGAG
961
+ 2BS_5163353 TTAAACTATACCTGGCTTATTCTCTTGAACATGTACAAATGCCAATATATATT---TCAG
962
+ * * ** * * ** ** * * ** * * * ** * * *
963
+
964
+ 2BS_5245544 AAATGCCATGGCACTGACATATCAATTGACCGA-ACCATGCATGTGCGTGTGGGTCATTA
965
+ 2DS_5334799 AAATGCCATGAAACTGACAAATCAACTCACCGA-ACCATGCATGTGCGTGCGCGTCATTA
966
+ 2AS_5222932 AAACATCAAACATATGGGTTACCAATGTATAAATAGCAGGATAGTGTTTCCAGGGAATCA
967
+ 2BS_5163353 AAACCTCAAACATATGGGTCACCTAAGTATAAATAGCAGGATAGTATGTCCTGGGAGTCA
968
+ *** ** ** * * * * * * ** * ** * * * *
969
+
970
+ 2BS_5245544 TAAGGCTATATCAGAGGATTGAACGGAAAGAGGTATTACCCATGATCAGTGCCCGAAGAT
971
+ 2DS_5334799 TAAGGTTAT--CAGAGGATTGAACGGAAAGAAGTATTACCCTTGATCAGTGCCAGCAGAT
972
+ 2AS_5222932 TAGGA------CAGAGAGGCAGA-GCCAGGATGCGATTCCC----TCGTGTTCTGAATTC
973
+ 2BS_5163353 TAGGA------CAGAGGGGTAGA-GCCAGGATGCGATTCCC----TCATGTTCTGAATTC
974
+ ** * ***** * * * ** * * *** ** * * *
975
+
976
+ 2BS_5245544 ATTTCATTGCGCAGAAGGTCACCAGCACTCACATGAGAAAATCCAAAATCCGAAGCGATC
977
+ 2DS_5334799 ATTTCATTCCGCAGAAGGTCACCAGCACTCACATGAGAAAATCCAAAATCCGAAGCGATC
978
+ 2AS_5222932 ATATAACTGCAAGACCATTTTTCTATGGTGTGGGGAGGGGAGT-GAGATCAGAGATCTGC
979
+ 2BS_5163353 ATATAACCGTAAGACCATTTTTCTATGGTGTGGGGAGGGGAGT-GAGATCAGAGATCTGC
980
+ ** * * * * * *** * * *** ** *
981
+
982
+ 2BS_5245544 CTACTACATTG-CGTTCCTTTCCCACTCCCAGGTCCCCCTACATGCAGGATCTTGATTAG
983
+ 2DS_5334799 CTACTACATTG-CGTTCCTTTCCCACTCCCAGGTCCCCCTACATGCAGGATCTTGATTAG
984
+ 2AS_5222932 GTATTTATTTGATATTAGATGAGTGTCTGCAATTCACTCATTTTGGAAGAAATTGCTAAT
985
+ 2BS_5163353 CTATTTATTTGATATTAGATGAGTGTCTGCAATTCACTCATTTTGGAAGAGATTGCTAAT
986
+ ** * *** ** * ** ** * * ** * ** *** * *
987
+
988
+ 2BS_5245544 ATCATGTGAACATTTGAAATTTGAGCGCCACAACACAAT--CCAACTTGAAACAGCACTT
989
+ 2DS_5334799 -TCGTGTGAACAACTGAAATTTGAGCGCCACAACACAAT--CCAACTTGAAACAGCACTG
990
+ 2AS_5222932 CTCTTCAGAAGGGGT-ACATATCAGGGATATAACACAGTAACATATTCTGTATACCACTC
991
+ 2BS_5163353 CTCTTCAGAAGGGGT-ACATATCAGGGATATAACACAGTAACATATTCTGTATATCACTC
992
+ ** * *** * * ** * ** * * ****** * * * * * * ****
993
+
994
+ 2BS_5245544 ATTGTCATGGGAGGGAAGGGATCCACAGTTTACTCTACACAGGATATGCATGGAATTTAT
995
+ 2DS_5334799 ATTATCATTG-ATAGAAGTGATCCTCAATTTACTCTACACAGGTTATGCATGGAGTATGT
996
+ 2AS_5222932 ATATTCAGGATCTGTAGGATGTCTT--ATTTATTTTTGAGACTTGACCTTTAGGGTGTCT
997
+ 2BS_5163353 GTATTCAGGATCTGTAGGATGTCTT--ATTTATTTTCGAGACTTGACCTTTAGGGTGTCT
998
+ * *** * * ** **** * * * * * * * * * *
999
+
1000
+ 2BS_5245544 AAATGTGAAACCAACCCTGCAACATTCTGGGAGTAAAAGCAGGGAAGAAT--TACCTAAG
1001
+ 2DS_5334799 AAATGTGAAACCAACCCTGCATTATTGGGGGAGTGCAGGTAGATTTTTTTTTTACCTAAG
1002
+ 2AS_5222932 AAGAGTA--------CTTGTTGAACTCC----ATGCAGATAAATGCAACGGGAACTGAAG
1003
+ 2BS_5163353 AAGAGTA--------CTTGTTGAACTCC----ATGCAGATAAACGCAACGGGAACTGAAG
1004
+ ** ** * ** * * * * * ** ***
1005
+
1006
+ 2BS_5245544 ACGAAAGCGATGAACGGCCTGTCACCATCGCTTCCCTACAGAATGAACAGACGGCACATC
1007
+ 2DS_5334799 ACGAAAGCGATTATAAATGTGAAAC-AGCACTGATTATCAT--TGAGGCAAGGGTTCCTC
1008
+ 2AS_5222932 ATGAAATCTTTGAAGCAGTTCGCAA-GTTGTTTTCCTCCTT---------AAGGTAAATC
1009
+ 2BS_5163353 ATGAAATCTTTGAAGCAGTTCGCAA-GTTGTTTTCCACCTT---------AAGGTAAATC
1010
+ * **** * * * * * * * * ** **
1011
+
1012
+ 2BS_5245544 GCCAAATTATTCACAAGAACTCTGCAAGATTTGTCACAAATAATAAGAATGCAGGCTTGG
1013
+ 2DS_5334799 AGTTTACTCTACACAGATATGC-ATGGAATTTATAA-ATGCAAAACCAATGC-----TGC
1014
+ 2AS_5222932 CTGATGTTTAAGACACGAAATTCCTCTCATTTACTGTGACTATGTCCGCTCTCCTGAAGG
1015
+ 2BS_5163353 CTGATGTTCAAGACACGGAATTCCTCTCATATACTGTGACTATGTCCGCTCTCCTGAAGG
1016
+ * *** * ** * * * *
1017
+
1018
+ 2BS_5245544 GAACGAACGTACAGCTAGGGACGTGAAGAGCCTGAGCAGATTCGGGGCCGGCGGTTTCTG
1019
+ 2DS_5334799 AAAATTACCTAAGACAAAAGCGATGAACGGCCTG-------TCACCATCGGT--TCCCTA
1020
+ 2AS_5222932 AGATGCACATT---CTTGCATCATCTGATTTCTGA------TTGCTTGCATATTATTTTC
1021
+ 2BS_5163353 AGGTGCACATT---CTTGCATCATCTGATTTCTGA------TTGCTTGCATATCATTTTC
1022
+ ** * * * *** * * *
1023
+
1024
+ 2BS_5245544 CGAAGAGAACAGTCAGGCGGATGAGCATCTAGGAGCGAGAGGAACGTATTGACCCCCAAT
1025
+ 2DS_5334799 CAGAATGA----------------------------------------------------
1026
+ 2AS_5222932 TAGTCCCAATTACTGTAGTTCTGAAAGCTTTTCAGTCCT---CACATATTTAGCATATCC
1027
+ 2BS_5163353 TAGTGCCAAAT----TAGTTCTGAAAG-TTTTCAGTCTT---CACATATTTAGCATATCC
1028
+ *
1029
+
1030
+ 2BS_5245544 GGAGCGAGAGAGGCGAGCACGCCAGATCCGGTCCGGCCACGTTGTGCGCGCGTGCGAGGC
1031
+ 2DS_5334799 ------------------------------------------------------------
1032
+ 2AS_5222932 CAACCCTC---AGTCCTCACATATATTGCAGCACCCACACTTTTTCAATACATTAACAAG
1033
+ 2BS_5163353 TAACCCTTCCAATTAAATGCCTAAGCTGCAGCACCCACACTTTT-CAATACATTAACAAG
1034
+
1035
+
1036
+ 2BS_5245544 GTTCGACGAAATGCGCAGGAGGAAAAGGAAAGGGGAACCGTGGGGTTACCTCGGCGTGGG
1037
+ 2DS_5334799 ------------------------------------------------------------
1038
+ 2AS_5222932 TGATGGCATGTTCTTTATACTAAGCCTGCCATTGCAGCTAGGGCAGGCCGTCGCTATAAG
1039
+ 2BS_5163353 TGATGACGAGTTCTTTATACCAAGCCTGCCATTGCAGCTAGGGCAGGCCGTCGCTATAAG
1040
+
1041
+
1042
+ 2BS_5245544 TGGGGAGGAGGAGGTGGTGCTGCTGGTGGTGGCAGGAGGAAGCGACGGCGGAGGAGCACG
1043
+ 2DS_5334799 ------------------------------------------------------------
1044
+ 2AS_5222932 CAGAAGGGTATTGCTTGTA--GGTACAAAGAGCTTGCGTTCCTGAATCCTTGCCATTTGT
1045
+ 2BS_5163353 CAAAAGGATATTGCTTGTA--GGTAGAAAGAGACTGAATTTCTGA-TCCTTGCCATTTGT
1046
+
1047
+
1048
+ 2BS_5245544 GGGATCGGAGGAGAAGGGAGCTCAGCCGCCGCCTCAGCATCCCGACGCCGATCGCTCCCG
1049
+ 2DS_5334799 ------------------------------------------------------------
1050
+ 2AS_5222932 GTTCACTGTGCACAATAAAGAAAGACAAACTGACAAGCAAAATGAA----CATGGTAGCA
1051
+ 2BS_5163353 GTTCATTGTGCACAATAAAGAAAGACAAACTGGCAAGCAAAATGAATGAACAAAGTAGCA
1052
+
1053
+
1054
+ 2BS_5245544 CCTTGCTTGCCGTGCAGGGCAGGACAGAGGAGAAGCAAGGGGGGCTCGCCGTTCACCCCA
1055
+ 2DS_5334799 ------------------------------------------------------------
1056
+ 2AS_5222932 TTTATCTTACTGATTGATGGATAAGGAAGAAGAGGTCCAGGATG-TTGCTACGTCGCAAA
1057
+ 2BS_5163353 TCTGCCTTGTTGATTGATGGATAAGGAAGAAGAGGTCCAGGGGG-TTGCAACGTAGCTAA
1058
+
1059
+
1060
+ 2BS_5245544 GCCGCGGGAGGGGCCGAACGGCCGAGGTCGGCGGAGGGAGGGGCGGCGGCGAGCGGCCGT
1061
+ 2DS_5334799 ------------------------------------------------------------
1062
+ 2AS_5222932 CTTTGTCATCTAGCTGACTCGCCGAACCCTCGCC-TGTAGC--TAGTTTCTCGACACGTT
1063
+ 2BS_5163353 CTTTGTCATCTAGCTGACTCGCCGAACCCTTTCCATGTAGC--TAGTTTCTCGACACGTT
1064
+
1065
+
1066
+ 2BS_5245544 CGACTTGGCGTGGCGGGGAGCGGGGCCGGGACGGGGAGAGTTCGTCGTTTCTTTTCCTTT
1067
+ 2DS_5334799 ------------------------------------------------------------
1068
+ 2AS_5222932 TGACTAAGCAACGCTAGCAACTTGCGGTTGTCCCAGCTTATGATAAAGATGCACTCCTAC
1069
+ 2BS_5163353 TGACTAAGCAATACCGGCATCTT-------------CTTCTATCTAATATA---------
1070
+
1071
+
1072
+ 2BS_5245544 TCGGAGCTGCTTCTAATCGATGAAAGTGAAAAAAAAATGCCTTTTCCGCTTCGCGTGTCA
1073
+ 2DS_5334799 ------------------------------------------------------------
1074
+ 2AS_5222932 TTTGTTGCTACATATACACAAGGTAGTTGCAATCATTTGACCATTTCACCCTGTTTG-CA
1075
+ 2BS_5163353 -----------ATAAGTAAAAGAGAGTTGCAATGATTTGACCGTTTCGCCCTGTTTG-CA
1076
+
1077
+
1078
+ 2BS_5245544 GGCAGCGTGGAATATCTTGTG---CTTTTAGCAAGGGGAAGCATGATGAATTGTCAAAAG
1079
+ 2DS_5334799 ------------------------------------------------------------
1080
+ 2AS_5222932 GGCTATGAGGAGGCTGTCGTC---TTCCGCGCGAGCGGGGGGAATTGGAATTACGCCTGG
1081
+ 2BS_5163353 GGCTATGAGGAGGCTGTCGTCGTCTTCCGCAGGAGCCGGGGGAATCAGAGTTACGCCTGG
1082
+
1083
+
1084
+ 2BS_5245544 CATAAATTGTTAGTATTTTTTATGGGTTGCGATAACTGCCACACGTGTGGCATGGATACG
1085
+ 2DS_5334799 ------------------------------------------------------------
1086
+ 2AS_5222932 CGGAAATTCTCTCTCCCTCTTTTCTTTTACCTTTACATCTCTTAGCATAATAATTGTACA
1087
+ 2BS_5163353 CGGAAATTCTCTTCCTTTCCTTA--TTTACTTTTACATGTCTTGGCATAATAATTGTACA
1088
+
1089
+
1090
+ 2BS_5245544 AACCCGCCCACACGCCTCGTGTG-GCGTGAACAGGAACCCGCCCGCACGACCGCGTCCGG
1091
+ 2DS_5334799 ------------------------------------------------------------
1092
+ 2AS_5222932 TATTCTGATACACGGACCATTCCTGTGAAAACAGAGGGCCCCTGGTGAAACGCCCAGCCT
1093
+ 2BS_5163353 TATTCTGATACACGGTCCATGCCTGTGAAAACAGAGGGCCCCCGGTGAAACGCTCAGCCC
1094
+
1095
+
1096
+ 2BS_5245544 GCGCGCAATTGCACAGCCCGCACGTCCGGTGTGTGGCAACCCCGTCCGCACTGCT--CCA
1097
+ 2DS_5334799 ------------------------------------------------------------
1098
+ 2AS_5222932 GCCTGCTATGATAAACCCTGACCCTTGCGCTCTCGTCACGCGCCACGGTATA-----CGA
1099
+ 2BS_5163353 ----GCTATGATAAACCCTAACCCTCACGCTCCCGTCGCGCGCCACGGTATAGCGCATGA
1100
+
1101
+
1102
+ 2BS_5245544 TCCGGGCCACACGACCCGCTGCCCGCACGACCCAGCCGTTCCCGTCCTCGCTCGATCGCC
1103
+ 2DS_5334799 ------------------------------------------------------------
1104
+ 2AS_5222932 TACTTCAG-ACTGCAGCAAAACTGCTACAACGATATTTTTTTTCTG-----CCAACACCC
1105
+ 2BS_5163353 TACGCTGGTATGGCAGCAATACTGCTACAATGATATTTTTCTTCCAACACCCTAACAATA
1106
+
1107
+
1108
+ 2BS_5245544 TCTCTCGACTGCC-GCCATCGTCCCCCACCTCTCAAACACCTACCTCCGTCGCCGGC---
1109
+ 2DS_5334799 ------------------------------------------------------------
1110
+ 2AS_5222932 TAC-------------AAATATATGTCTGC---------CGTGTTTT-------------
1111
+ 2BS_5163353 TACTCCCTCCGTCTGGAAATACTTGTCATCAAAATGGGACATATTTTAGTTCTAGATACA
1112
+
1113
+
1114
+ 2BS_5245544 CTTCTCTGGTTGCCATGGAAACCAAAGCAGATTCGTAGGGCAAACCCACCGCAAACCACA
1115
+ 2DS_5334799 ------------------------------------------------------------
1116
+ 2AS_5222932 ----TTTTACC-------AGGATAA-TATAGTTGTATG---------TATGTGCGCCGTG
1117
+ 2BS_5163353 TCTCTTTTATCTATTTTGATGACAAGTATTTTTGGACGGAGGGAGTATATGCCTGCCCTG
1118
+
1119
+
1120
+ 2BS_5245544 CCCCAACCCTC-----------CCCAGCCCCAGCCCCCCACTCCAATCCAGCCCTTCAGA
1121
+ 2DS_5334799 ------------------------------------------------------------
1122
+ 2AS_5222932 CTTGTGTTGTG-----------ACGAT-TTGCTGGGTATATATC----------------
1123
+ 2BS_5163353 TTGTTGTTTTTTTTACTAGAATATGATATTGTTGTATGTGCGCCGTGCTTGTCTGGTGAC
1124
+
1125
+
1126
+ 2BS_5245544 GACGATCAGCTAAAATCAGGTGAAAAATCTCCCGATCTCATCCTTCTCATCCTTCAGGCT
1127
+ 2DS_5334799 ------------------------------------------------------------
1128
+ 2AS_5222932 -------TATGGAGAGATGAGGTGAGAGCTGCAGGCGTCCGATAAACTAGTGATTTGACT
1129
+ 2BS_5163353 AATCTGCTATTTGTATACGAGGTGAGAACTGCAGGCGTTCGATAAACTAGTGATTTGACT
1130
+
1131
+
1132
+ 2BS_5245544 GAAAATCTCCCCGATCTTGTACTGGATCCATGCTATAGGGGGCTGGCAACACCAGTAGTT
1133
+ 2DS_5334799 ------------------------------------------------------------
1134
+ 2AS_5222932 GGAGGAAAAAGGCCGTGTACGTTTGGATTTAGTTAATGTGAACTGCCGGCGT--GTTATT
1135
+ 2BS_5163353 CAAGGGAAAAGAGAGTGTACGTTTGGATTTAGTTAGTGTGAACCGCCGGCGT--GTTTTT
1136
+
1137
+
1138
+ 2BS_5245544 CTGAGATCCAGTAGTTTTGTGATCTACGTGTTGATATTAACTTAAGTTCCTAGTTTGATT
1139
+ 2DS_5334799 ------------------------------------------------------------
1140
+ 2AS_5222932 GTCAGTTCTTGACCGGCCGTTTAGCAGTAGCTGATGCCATCTTCAAACGCTCGCCAAAAA
1141
+ 2BS_5163353 GTCAGTTCTTGACCGGCCGTTTAGGTTTAGCTGATGCGATCTTGAAAGAAAAAAAAAATG
1142
+
1143
+
1144
+ 2BS_5245544 GACGCAAGTAGTTGGGTAGGCAAATGGATGAGTAGGAATCCCTGAAAAAAGGAGATGAAG
1145
+ 2DS_5334799 ------------------------------------------------------------
1146
+ 2AS_5222932 AAAAAA------------------------------------------------------
1147
+ 2BS_5163353 TGGAGCGCCGGCGCTTGCACGCCAAGTCTAATCTAAAAACTCCCCGTTTCCAAAAGATTG
1148
+
1149
+
1150
+ 2BS_5245544 GACAATTTTGGAATAAAGGGGGTGGGAAAAATTAATTGCCACTTGTGTACAACGATAGTT
1151
+ 2DS_5334799 ------------------------------------------------------------
1152
+ 2AS_5222932 ------------------------------------------------------------
1153
+ 2BS_5163353 TCTGTCTGTGCACTCCACGGGAGGAGAAAGCTCTGCTACTATTGACTCATTTTTCTTGCC
1154
+
1155
+
1156
+ 2BS_5245544 GCCACCTCTCGTTGTCAGTAGCTGCCACCTAGTTGACCTGTTGCTTGC-CATCCCTATCT
1157
+ 2DS_5334799 ------------------------------------------------------------
1158
+ 2AS_5222932 ------------------------------------------------------------
1159
+ 2BS_5163353 TGCATCATCGCCTTGCAAGCCATGGAGCGCGGGCACCTGGCACTTGCTACAGAGCCGGCG
1160
+
1161
+
1162
+ 2BS_5245544 TCTCTGTGCAAGCAGCAGAAGAATACAATTCTTGTGGATTATTGATGCGTTCTTGATCAT
1163
+ 2DS_5334799 ------------------------------------------------------------
1164
+ 2AS_5222932 ------------------------------------------------------------
1165
+ 2BS_5163353 TGTCGTCATCGTCATCGTCGCGCTGACAGGTGGACTTCTCGGAGGGCCTCTTTGGATCCT
1166
+
1167
+
1168
+ 2BS_5245544 GCAGTGATTGAGAACATATTGGAAAGAAGCGAGCCACGGAAAGAATGAATCACGAAGATG
1169
+ 2DS_5334799 ------------------------------------------------------------
1170
+ 2AS_5222932 ------------------------------------------------------------
1171
+ 2BS_5163353 AGGAATGGAACACACGAATTCGATTGGAATATATGCAAAGGCAGCACGCATGATTGCGAG
1172
+
1173
+
1174
+ 2BS_5245544 GAGCTAATACTTGGGTTCTCAAAGGCCAGAAACGCCCCCTTGGGATGCATCAGAGTACAG
1175
+ 2DS_5334799 ------------------------------------------------------------
1176
+ 2AS_5222932 ------------------------------------------------------------
1177
+ 2BS_5163353 TGGAACACGCGAAATTGATATGAACACACACGCGAAGGCAACATAGATGATCGCGAAACG
1178
+
1179
+
1180
+ 2BS_5245544 TCAACTCATCTCTGCAGGGCCTTTGCTGCCACTACTAGA-ACAGTATACATGCATTGGTA
1181
+ 2DS_5334799 ------------------------------------------------------------
1182
+ 2AS_5222932 ------------------------------------------------------------
1183
+ 2BS_5163353 CGGAAAAATCGCAGCGTTATTATTATTTTTTTGGCTAGGTACATAATCCGGGCATGTGAA
1184
+
1185
+
1186
+ 2BS_5245544 TGATGCGTGATAACAAAAATAAGAGAACAGTTGCCATCTTCGTAACGATGAAGATGACAT
1187
+ 2DS_5334799 ------------------------------------------------------------
1188
+ 2AS_5222932 ------------------------------------------------------------
1189
+ 2BS_5163353 AACTGTCTCGATCGCACGCACATAATCCGGGGAATGAAGAGGTTGAGGTGAACCTGAAAT
1190
+
1191
+
1192
+ 2BS_5245544 TCTACTTATGTCATGCACTTTCATTTTTTCACAGGTTCTTATGACCAAAACACTCTCAGG
1193
+ 2DS_5334799 ------------------------------------------------------------
1194
+ 2AS_5222932 ------------------------------------------------------------
1195
+ 2BS_5163353 TTGTGTTGGAATCTAGGCATGGAGAGAAAGATGATTCGTCACGAGCAACGTCGGCATCGA
1196
+
1197
+
1198
+ 2BS_5245544 GGCCCCCATGGCAAGTTCAGTTACAAGGCGCTAACACTAACAAATGTACGGGCAGCCAAC
1199
+ 2DS_5334799 ------------------------------------------------------------
1200
+ 2AS_5222932 ------------------------------------------------------------
1201
+ 2BS_5163353 CTGCACCAAGCTGCCATGACTCCATGGAGTGAGGTCATGTGAAGACTTTTGGGGAGCAAA
1202
+
1203
+
1204
+ 2BS_5245544 TTCAACTAGCTAATGTGGCTAATCAAGGTAATGCATACGAAAAAAGAGCACATACTGGTG
1205
+ 2DS_5334799 ------------------------------------------------------------
1206
+ 2AS_5222932 ------------------------------------------------------------
1207
+ 2BS_5163353 ACTCCAACCGGGCATGTCATAGCCAGCCAAAAATTTCTCATCTATATCTTTCCATCCCCC
1208
+
1209
+
1210
+ 2BS_5245544 TGGACATGAAAAATGAACATGCAAAAAAATGGCAAAAGGACTCACGAGTTATCACGGGTG
1211
+ 2DS_5334799 ------------------------------------------------------------
1212
+ 2AS_5222932 ------------------------------------------------------------
1213
+ 2BS_5163353 CAAAAGAGGGGGAGTTGAAGTGCTTGTCTCCGAAAAAAGATGGCGTTTTGCACATCCACA
1214
+
1215
+
1216
+ 2BS_5245544 AAAAATGCAGAGCCTTCATGCAGCACGTGGCATCAGGCAGCACCCATGTACCTGCCATCG
1217
+ 2DS_5334799 ------------------------------------------------------------
1218
+ 2AS_5222932 ------------------------------------------------------------
1219
+ 2BS_5163353 CAATCAAGAAAACATAAAATGTGCCCCCGCGGAAAAAAGACACACATAAATGTGACTATT
1220
+
1221
+
1222
+ 2BS_5245544 ACGTCATACACAGGTGAGTCCATAAAAAGTGAAGTTGCGGATGCTCAATTAGCAGAAGGA
1223
+ 2DS_5334799 ------------------------------------------------------------
1224
+ 2AS_5222932 ------------------------------------------------------------
1225
+ 2BS_5163353 ATTTTCTCCCGCAATATATAATTACATTATAGTCCCTTCGTCCCAGAATAAGTGTCTTGA
1226
+
1227
+
1228
+ 2BS_5245544 ACATGGTTGACAATTACACTTGCCATGACTGGACATCTACAATTGCCATGGTTAAATAAC
1229
+ 2DS_5334799 ------------------------------------------------------------
1230
+ 2AS_5222932 ------------------------------------------------------------
1231
+ 2BS_5163353 GCTTAGTACAAATTTATACTAGAGCTAGTACAAAGTTGAGTCACTTATTTTGAGACGGAG
1232
+
1233
+
1234
+ 2BS_5245544 TGCAGTTGTCATCCCTGGACAAATGCTGTTGCCATCCATGGACAACTGCAGTTTCCATGG
1235
+ 2DS_5334799 ------------------------------------------------------------
1236
+ 2AS_5222932 ------------------------------------------------------------
1237
+ 2BS_5163353 GGAGTAGAACCTAGCAGAATGTATGAATGTACATTTTAGGCAAATCTATAGACAGAGATC
1238
+
1239
+
1240
+ 2BS_5245544 AGGAAGAACTGCAGTTGCCATGCTAGTGTAACTGCAGTTGCCATGCCATGACAACTTCAG
1241
+ 2DS_5334799 ------------------------------------------------------------
1242
+ 2AS_5222932 ------------------------------------------------------------
1243
+ 2BS_5163353 TTCACACTTGTAATGAAGACTTTTGAAAGGGAAAAATGGGTTCAAACTTGACCAAAACTA
1244
+
1245
+
1246
+ 2BS_5245544 TTGCCATGGAGGAACAACTGTAGTTGCCATACGAGTGCAACTACAGTTGCCAAGCCAGGA
1247
+ 2DS_5334799 ------------------------------------------------------------
1248
+ 2AS_5222932 ------------------------------------------------------------
1249
+ 2BS_5163353 CATCCGGAACTTCATGAATGTGTGAATTGGAGGCAGTGGCG-------------------
1250
+
1251
+
1252
+ 2BS_5245544 AAACTGCAGTTGCCACATCAGGGGCAACTAGAGTTTCCGTGCTAGCACAAACTGCATTTT
1253
+ 2DS_5334799 ------------------------------------------------------------
1254
+ 2AS_5222932 ------------------------------------------------------------
1255
+ 2BS_5163353 ------------------------------------------------------------
1256
+
1257
+
1258
+ 2BS_5245544 CCATGAATTGACCAACCACTACTATGCTTACAGGTTATTACGGTGGTGGTAACCGGGCAA
1259
+ 2DS_5334799 ------------------------------------------------------------
1260
+ 2AS_5222932 ------------------------------------------------------------
1261
+ 2BS_5163353 ------------------------------------------------------------
1262
+
1263
+
1264
+ 2BS_5245544 ACGTCTCGTGGCAAGATTCACAAATTGCAGGTGGAGCACGTCATTTTGGTGTCACAGACC
1265
+ 2DS_5334799 ------------------------------------------------------------
1266
+ 2AS_5222932 ------------------------------------------------------------
1267
+ 2BS_5163353 ------------------------------------------------------------
1268
+
1269
+
1270
+ 2BS_5245544 ACACAAGATGGTCACATGCAGCACAACAAGGTAAAGAAAAAAACTGAACCACAAAACAGC
1271
+ 2DS_5334799 ------------------------------------------------------------
1272
+ 2AS_5222932 ------------------------------------------------------------
1273
+ 2BS_5163353 ------------------------------------------------------------
1274
+
1275
+
1276
+ 2BS_5245544 ACTACATTTGTTTTGGTGGCAAAAAAAGCACGTGCCGAAAAAAAGAATTGAAGCAGTGAT
1277
+ 2DS_5334799 ------------------------------------------------------------
1278
+ 2AS_5222932 ------------------------------------------------------------
1279
+ 2BS_5163353 ------------------------------------------------------------
1280
+
1281
+
1282
+ 2BS_5245544 GGTGGACAAGAACGAAGCATAAAACACTGAAAAAGTGGTTGCGTGCAAATGAGTCATGTA
1283
+ 2DS_5334799 ------------------------------------------------------------
1284
+ 2AS_5222932 ------------------------------------------------------------
1285
+ 2BS_5163353 ------------------------------------------------------------
1286
+
1287
+
1288
+ 2BS_5245544 TTGTCTTTGAAAAATTGCCAACTGCTAAAAGCATGTACGCATCACTAATGGTTGAACACA
1289
+ 2DS_5334799 ------------------------------------------------------------
1290
+ 2AS_5222932 ------------------------------------------------------------
1291
+ 2BS_5163353 ------------------------------------------------------------
1292
+
1293
+
1294
+ 2BS_5245544 TTTCGCCTAGTGAGATCAATCTTATAATGCAGTAGTTTTGTTGCGAGAACACAGTGGTTG
1295
+ 2DS_5334799 ------------------------------------------------------------
1296
+ 2AS_5222932 ------------------------------------------------------------
1297
+ 2BS_5163353 ------------------------------------------------------------
1298
+
1299
+
1300
+ 2BS_5245544 CCATTTGTTGGTTGCAGTGTTTGCCATGAATGCAGGACTGCAGCTGCCATGCATATAGAA
1301
+ 2DS_5334799 ------------------------------------------------------------
1302
+ 2AS_5222932 ------------------------------------------------------------
1303
+ 2BS_5163353 ------------------------------------------------------------
1304
+
1305
+
1306
+ 2BS_5245544 CCCAAGTTTTCCTACTAAAAAAAGGAGCGTGTTGTCGTGCATTGGCAGACATTGGTTGCC
1307
+ 2DS_5334799 ------------------------------------------------------------
1308
+ 2AS_5222932 ------------------------------------------------------------
1309
+ 2BS_5163353 ------------------------------------------------------------
1310
+
1311
+
1312
+ 2BS_5245544 ATGTTTGTTGAACTGTACCTGCCATGAATGGACAGCTACATTTGCCACACATGTCCACGC
1313
+ 2DS_5334799 ------------------------------------------------------------
1314
+ 2AS_5222932 ------------------------------------------------------------
1315
+ 2BS_5163353 ------------------------------------------------------------
1316
+
1317
+
1318
+ 2BS_5245544 GCGAACTGACATCTTGATGTTCGAATGATGTAATGCCAAATCACTCGATGTTAATGTCAT
1319
+ 2DS_5334799 ------------------------------------------------------------
1320
+ 2AS_5222932 ------------------------------------------------------------
1321
+ 2BS_5163353 ------------------------------------------------------------
1322
+
1323
+
1324
+ 2BS_5245544 CTGTTGCGATAAACATGTTATTCAAACAAAAAAATCTTACTCTCGTACCTGTTTTTTCCA
1325
+ 2DS_5334799 ------------------------------------------------------------
1326
+ 2AS_5222932 ------------------------------------------------------------
1327
+ 2BS_5163353 ------------------------------------------------------------
1328
+
1329
+
1330
+ 2BS_5245544 TTACAGGGCCTACAACTACACTGAACAGCGGCACGGGCACATCTACTGCGGGAAGCTCTG
1331
+ 2DS_5334799 ------------------------------------------------------------
1332
+ 2AS_5222932 ------------------------------------------------------------
1333
+ 2BS_5163353 ------------------------------------------------------------
1334
+
1335
+
1336
+ 2BS_5245544 AGCGCACAGAAGACGCGTTCCCCCAGCCAGCAAACAATCATGCCGCAAATAATGCCGAGT
1337
+ 2DS_5334799 ------------------------------------------------------------
1338
+ 2AS_5222932 ------------------------------------------------------------
1339
+ 2BS_5163353 ------------------------------------------------------------
1340
+
1341
+
1342
+ 2BS_5245544 CAGTGTCAGAAATGGCAATCATTCCAGCAATTCCCACAACCACCCCTTTGAACGCAAGCA
1343
+ 2DS_5334799 ------------------------------------------------------------
1344
+ 2AS_5222932 ------------------------------------------------------------
1345
+ 2BS_5163353 ------------------------------------------------------------
1346
+
1347
+
1348
+ 2BS_5245544 CTGGCAACATTCAAATCGATGAAACTGCTGCCGATACTGAAGTGAATGATGAAACTGACG
1349
+ 2DS_5334799 ------------------------------------------------------------
1350
+ 2AS_5222932 ------------------------------------------------------------
1351
+ 2BS_5163353 ------------------------------------------------------------
1352
+
1353
+
1354
+ 2BS_5245544 ACGAGGCACAAGGGGATGAAGATGATGGGCAACCAGATATCATGGTACCTCTGCCACCAT
1355
+ 2DS_5334799 ------------------------------------------------------------
1356
+ 2AS_5222932 ------------------------------------------------------------
1357
+ 2BS_5163353 ------------------------------------------------------------
1358
+
1359
+
1360
+ 2BS_5245544 ACGTTGGGCAAAGATTTGAATCGTTTGAAGAAGCAAAGGAATTCTACCAGACATATGCAA
1361
+ 2DS_5334799 ------------------------------------------------------------
1362
+ 2AS_5222932 ------------------------------------------------------------
1363
+ 2BS_5163353 ------------------------------------------------------------
1364
+
1365
+
1366
+ 2BS_5245544 AGTTTCATGGGTTTGCCGTCAACACCGAATACCATAGAAAAATTAAGAAAACTAATGAGT
1367
+ 2DS_5334799 ------------------------------------------------------------
1368
+ 2AS_5222932 ------------------------------------------------------------
1369
+ 2BS_5163353 ------------------------------------------------------------
1370
+
1371
+
1372
+ 2BS_5245544 ACAACAGAGGTGAGATGTGGTGCCACAAGGTACGAAGGAACAAGAAAGGGAAAGGTGTTG
1373
+ 2DS_5334799 ------------------------------------------------------------
1374
+ 2AS_5222932 ------------------------------------------------------------
1375
+ 2BS_5163353 ------------------------------------------------------------
1376
+
1377
+
1378
+ 2BS_5245544 CGCCTGTCGTTCCGAAACGAAAGAGAGGGATCATTCTCAAGACGGGTTGCCCTGTCCGGT
1379
+ 2DS_5334799 ------------------------------------------------------------
1380
+ 2AS_5222932 ------------------------------------------------------------
1381
+ 2BS_5163353 ------------------------------------------------------------
1382
+
1383
+
1384
+ 2BS_5245544 GTAAGCTAAACATAGATGGAACACAATATGTGGTCACTGAGTATTTTGACGAGCACAACC
1385
+ 2DS_5334799 ------------------------------------------------------------
1386
+ 2AS_5222932 ------------------------------------------------------------
1387
+ 2BS_5163353 ------------------------------------------------------------
1388
+
1389
+
1390
+ 2BS_5245544 ACAAACTCATAAAGAAGTTTGATCTGGTCAAATTTCTGACCGCCCACAGAGGGTTCACCC
1391
+ 2DS_5334799 ------------------------------------------------------------
1392
+ 2AS_5222932 ------------------------------------------------------------
1393
+ 2BS_5163353 ------------------------------------------------------------
1394
+
1395
+
1396
+ 2BS_5245544 CAGTCGAAAGGCAATTCGTAAAGCTGCTACATGATTGTAACATCGGTCCATCAAGAATGG
1397
+ 2DS_5334799 ------------------------------------------------------------
1398
+ 2AS_5222932 ------------------------------------------------------------
1399
+ 2BS_5163353 ------------------------------------------------------------
1400
+
1401
+
1402
+ 2BS_5245544 TCCAGATACTATCACTCATCCAGCAAAAAGGGGAAACTGAGTAGCATGCCGTACATACCA
1403
+ 2DS_5334799 ------------------------------------------------------------
1404
+ 2AS_5222932 ------------------------------------------------------------
1405
+ 2BS_5163353 ------------------------------------------------------------
1406
+
1407
+
1408
+ 2BS_5245544 GCTGACGTCACAAACCTACAGGCCAAGTACCATAGAGAGAGCAAG
1409
+ 2DS_5334799 ---------------------------------------------
1410
+ 2AS_5222932 ---------------------------------------------
1411
+ 2BS_5163353 ---------------------------------------------
1412
+