bio-polymarker 1.3.2

Sign up to get free protection for your applications and to get access to all the features.
Files changed (177) hide show
  1. checksums.yaml +7 -0
  2. data/.travis.yml +24 -0
  3. data/Gemfile +23 -0
  4. data/README.md +205 -0
  5. data/Rakefile +61 -0
  6. data/SECURITY.md +16 -0
  7. data/VERSION +1 -0
  8. data/bin/bfr.rb +128 -0
  9. data/bin/blast_triads.rb +166 -0
  10. data/bin/blast_triads_promoters.rb +192 -0
  11. data/bin/count_variations.rb +36 -0
  12. data/bin/filter_blat_by_target_coverage.rb +69 -0
  13. data/bin/filter_exonerate_by_identity.rb +38 -0
  14. data/bin/find_best_blat_hit.rb +33 -0
  15. data/bin/find_best_exonerate.rb +17 -0
  16. data/bin/get_longest_hsp_blastx_triads.rb +66 -0
  17. data/bin/hexaploid_primers.rb +168 -0
  18. data/bin/homokaryot_primers.rb +183 -0
  19. data/bin/mafft_triads.rb +120 -0
  20. data/bin/mafft_triads_promoters.rb +403 -0
  21. data/bin/map_markers_to_contigs.rb +66 -0
  22. data/bin/marker_to_vcf.rb +241 -0
  23. data/bin/markers_in_region.rb +42 -0
  24. data/bin/mask_triads.rb +169 -0
  25. data/bin/polymarker.rb +410 -0
  26. data/bin/polymarker_capillary.rb +443 -0
  27. data/bin/polymarker_deletions.rb +350 -0
  28. data/bin/snp_position_to_polymarker.rb +101 -0
  29. data/bin/snps_between_bams.rb +107 -0
  30. data/bin/tag_stats.rb +75 -0
  31. data/bin/vcfLineToTable.rb +56 -0
  32. data/bin/vcfToPolyMarker.rb +82 -0
  33. data/bio-polymarker.gemspec +227 -0
  34. data/conf/defaults.rb +1 -0
  35. data/conf/primer3_config/dangle.dh +128 -0
  36. data/conf/primer3_config/dangle.ds +128 -0
  37. data/conf/primer3_config/interpretations/dangle_i.dh +131 -0
  38. data/conf/primer3_config/interpretations/dangle_i.ds +131 -0
  39. data/conf/primer3_config/interpretations/loops_i.dh +34 -0
  40. data/conf/primer3_config/interpretations/loops_i.ds +31 -0
  41. data/conf/primer3_config/interpretations/stack_i.dh +257 -0
  42. data/conf/primer3_config/interpretations/stack_i.ds +256 -0
  43. data/conf/primer3_config/interpretations/stackmm_i_mm.dh +257 -0
  44. data/conf/primer3_config/interpretations/stackmm_i_mm.ds +256 -0
  45. data/conf/primer3_config/interpretations/tetraloop_i.dh +79 -0
  46. data/conf/primer3_config/interpretations/tetraloop_i.ds +81 -0
  47. data/conf/primer3_config/interpretations/triloop_i.dh +21 -0
  48. data/conf/primer3_config/interpretations/triloop_i.ds +18 -0
  49. data/conf/primer3_config/interpretations/tstack2_i.dh +256 -0
  50. data/conf/primer3_config/interpretations/tstack2_i.ds +256 -0
  51. data/conf/primer3_config/interpretations/tstack_i.dh +256 -0
  52. data/conf/primer3_config/interpretations/tstack_i.ds +256 -0
  53. data/conf/primer3_config/interpretations/tstack_tm_inf_i.dh +256 -0
  54. data/conf/primer3_config/interpretations/tstack_tm_inf_i.ds +256 -0
  55. data/conf/primer3_config/loops.dh +30 -0
  56. data/conf/primer3_config/loops.ds +30 -0
  57. data/conf/primer3_config/stack.dh +256 -0
  58. data/conf/primer3_config/stack.ds +256 -0
  59. data/conf/primer3_config/stackmm.dh +256 -0
  60. data/conf/primer3_config/stackmm.ds +256 -0
  61. data/conf/primer3_config/tetraloop.dh +77 -0
  62. data/conf/primer3_config/tetraloop.ds +77 -0
  63. data/conf/primer3_config/triloop.dh +16 -0
  64. data/conf/primer3_config/triloop.ds +16 -0
  65. data/conf/primer3_config/tstack.dh +256 -0
  66. data/conf/primer3_config/tstack2.dh +256 -0
  67. data/conf/primer3_config/tstack2.ds +256 -0
  68. data/conf/primer3_config/tstack_tm_inf.ds +256 -0
  69. data/lib/bio/BFRTools.rb +465 -0
  70. data/lib/bio/BIOExtensions.rb +153 -0
  71. data/lib/bio/PolyploidTools/ChromosomeArm.rb +63 -0
  72. data/lib/bio/PolyploidTools/ExonContainer.rb +245 -0
  73. data/lib/bio/PolyploidTools/Marker.rb +175 -0
  74. data/lib/bio/PolyploidTools/Mask.rb +116 -0
  75. data/lib/bio/PolyploidTools/NoSNPSequence.rb +292 -0
  76. data/lib/bio/PolyploidTools/PrimerRegion.rb +30 -0
  77. data/lib/bio/PolyploidTools/SNP.rb +804 -0
  78. data/lib/bio/PolyploidTools/SNPMutant.rb +86 -0
  79. data/lib/bio/PolyploidTools/SNPSequence.rb +55 -0
  80. data/lib/bio/db/blast.rb +114 -0
  81. data/lib/bio/db/exonerate.rb +333 -0
  82. data/lib/bio/db/primer3.rb +820 -0
  83. data/lib/bio-polymarker.rb +28 -0
  84. data/test/data/7B_amplicon_test.fa +12 -0
  85. data/test/data/7B_amplicon_test.fa.fai +1 -0
  86. data/test/data/7B_amplicon_test_reference.fa +110 -0
  87. data/test/data/7B_amplicon_test_reference.fa.fai +3 -0
  88. data/test/data/7B_marker_test.txt +1 -0
  89. data/test/data/BS00068396_51.fa +2 -0
  90. data/test/data/BS00068396_51_blast.tab +4 -0
  91. data/test/data/BS00068396_51_contigs.aln +1412 -0
  92. data/test/data/BS00068396_51_contigs.dnd +7 -0
  93. data/test/data/BS00068396_51_contigs.fa +8 -0
  94. data/test/data/BS00068396_51_contigs.fa.fai +4 -0
  95. data/test/data/BS00068396_51_contigs.fa.nhr +0 -0
  96. data/test/data/BS00068396_51_contigs.fa.nin +0 -0
  97. data/test/data/BS00068396_51_contigs.fa.nsq +0 -0
  98. data/test/data/BS00068396_51_contigs.nhr +0 -0
  99. data/test/data/BS00068396_51_contigs.nin +0 -0
  100. data/test/data/BS00068396_51_contigs.nsq +0 -0
  101. data/test/data/BS00068396_51_exonerate.tab +6 -0
  102. data/test/data/BS00068396_51_for_polymarker.txt +1 -0
  103. data/test/data/BS00068396_51_genes.txt +14 -0
  104. data/test/data/IWGSC_CSS_1AL_scaff_1455974.fa +112 -0
  105. data/test/data/IWGSC_CSS_1AL_scaff_1455974_aln_contigs.fa +2304 -0
  106. data/test/data/IWGSC_CSS_1AL_scaff_1455974_aln_contigs.fa.fai +11 -0
  107. data/test/data/LIB1716.bam +0 -0
  108. data/test/data/LIB1716.bam.bai +0 -0
  109. data/test/data/LIB1719.bam +0 -0
  110. data/test/data/LIB1719.bam.bai +0 -0
  111. data/test/data/LIB1721.bam +0 -0
  112. data/test/data/LIB1721.bam.bai +0 -0
  113. data/test/data/LIB1722.bam +0 -0
  114. data/test/data/LIB1722.bam.bai +0 -0
  115. data/test/data/PST130_7067.csv +1 -0
  116. data/test/data/PST130_7067.fa +2 -0
  117. data/test/data/PST130_7067.fa.fai +1 -0
  118. data/test/data/PST130_7067.fa.ndb +0 -0
  119. data/test/data/PST130_7067.fa.nhr +0 -0
  120. data/test/data/PST130_7067.fa.nin +0 -0
  121. data/test/data/PST130_7067.fa.not +0 -0
  122. data/test/data/PST130_7067.fa.nsq +0 -0
  123. data/test/data/PST130_7067.fa.ntf +0 -0
  124. data/test/data/PST130_7067.fa.nto +0 -0
  125. data/test/data/PST130_reverse_primer.csv +1 -0
  126. data/test/data/S22380157.fa +16 -0
  127. data/test/data/S22380157.fa.fai +1 -0
  128. data/test/data/S22380157.vcf +67 -0
  129. data/test/data/S58861868/LIB1716.bam +0 -0
  130. data/test/data/S58861868/LIB1716.sam +651 -0
  131. data/test/data/S58861868/LIB1719.bam +0 -0
  132. data/test/data/S58861868/LIB1719.sam +805 -0
  133. data/test/data/S58861868/LIB1721.bam +0 -0
  134. data/test/data/S58861868/LIB1721.sam +1790 -0
  135. data/test/data/S58861868/LIB1722.bam +0 -0
  136. data/test/data/S58861868/LIB1722.sam +1271 -0
  137. data/test/data/S58861868/S58861868.fa +16 -0
  138. data/test/data/S58861868/S58861868.fa.fai +1 -0
  139. data/test/data/S58861868/S58861868.vcf +76 -0
  140. data/test/data/S58861868/header.txt +9 -0
  141. data/test/data/S58861868/merged.bam +0 -0
  142. data/test/data/S58861868/merged_reheader.bam +0 -0
  143. data/test/data/S58861868/merged_reheader.bam.bai +0 -0
  144. data/test/data/Test3Aspecific.csv +2 -0
  145. data/test/data/Test3Aspecific_contigs.fa +6 -0
  146. data/test/data/bfr_out_test.csv +5 -0
  147. data/test/data/chr1A_C1145499T/chr1A_C1145499T.csv +1 -0
  148. data/test/data/chr1A_G540414846C/chr1A_G540414846C.csv +1 -0
  149. data/test/data/chr1A_G540414846C/chr1A_G540414846C.fa +2 -0
  150. data/test/data/chr1A_T517634750C/chr1A_T517634750C.csv +1 -0
  151. data/test/data/chr2D_C112180134A/chr2D_C112180134A.csv +1 -0
  152. data/test/data/chr4D_C14473543T/chr4D_C14473543T.csv +1 -0
  153. data/test/data/chr4D_C14473543T/chr4D_C14473543T.fa +2 -0
  154. data/test/data/headerMergeed.txt +9 -0
  155. data/test/data/headerS2238015 +1 -0
  156. data/test/data/mergedLibs.bam +0 -0
  157. data/test/data/mergedLibsReheader.bam +0 -0
  158. data/test/data/mergedLibsSorted.bam +0 -0
  159. data/test/data/mergedLibsSorted.bam.bai +0 -0
  160. data/test/data/patological_cases5D.csv +1 -0
  161. data/test/data/primer_3_input_header_test +5 -0
  162. data/test/data/short_primer_design_test.csv +10 -0
  163. data/test/data/some_tests/some_tests.csv +201 -0
  164. data/test/data/test_from_mutant.csv +3 -0
  165. data/test/data/test_iselect.csv +196 -0
  166. data/test/data/test_iselect_reference.fa +1868 -0
  167. data/test/data/test_iselect_reference.fa.fai +934 -0
  168. data/test/data/test_primer3_error.csv +4 -0
  169. data/test/data/test_primer3_error_contigs.fa +10 -0
  170. data/test/test_bfr.rb +135 -0
  171. data/test/test_blast.rb +47 -0
  172. data/test/test_exon_container.rb +17 -0
  173. data/test/test_exonearate.rb +48 -0
  174. data/test/test_integration.rb +76 -0
  175. data/test/test_snp_parsing.rb +121 -0
  176. data/test/test_wrong_selection.sh +5 -0
  177. metadata +356 -0
data/test/data/BS00068396_51_contigs.aln ADDED
@@ -0,0 +1,1412 @@
1
+ CLUSTAL 2.1 multiple sequence alignment
2
+
3
+
4
+ 2BS_5245544 ------------------------------------------------------------
5
+ 2DS_5334799 ------------------------------------------------------------
6
+ 2AS_5222932 ------------------------------------------------------------
7
+ 2BS_5163353 ATGTAGTGGTGGTGTGTGAGCGACATTTGAATAGTTTCTGTAATATATGTGTGGATGTGA
8
+
9
+
10
+ 2BS_5245544 ------------------------------------------------------------
11
+ 2DS_5334799 ------------------------------------------------------------
12
+ 2AS_5222932 ------------------------------------------------------------
13
+ 2BS_5163353 ACCTACTTAGGCGTGACAGCAGATATGTTTTTTATATTTATCATTATTACTGTGGTTTCA
14
+
15
+
16
+ 2BS_5245544 ------------------------------------------------------------
17
+ 2DS_5334799 ------------------------------------------------------------
18
+ 2AS_5222932 ------------------------------------------------------------
19
+ 2BS_5163353 TCGTTTGTATCACCCGTTTGCTGTTTTGAATGCATCACGATGTTTTAAAACATGGCAAAT
20
+
21
+
22
+ 2BS_5245544 ------------------------------------------------------------
23
+ 2DS_5334799 ------------------------------------------------------------
24
+ 2AS_5222932 ------------------------------------------------------------
25
+ 2BS_5163353 GTAGTTCATCAGACATGGTTAGCGAAAGTCATCGTCATTGTTCATTTGGACATTTTGCTT
26
+
27
+
28
+ 2BS_5245544 ------------------------------------------------------------
29
+ 2DS_5334799 ------------------------------------------------------------
30
+ 2AS_5222932 ------------------------------------------------------------
31
+ 2BS_5163353 CTCCTATTTCATCACTAACTTCACCGGCTAGCATGGTAGGTTGATCATGGAGCCACAACC
32
+
33
+
34
+ 2BS_5245544 ------------------------------------------------------------
35
+ 2DS_5334799 ------------------------------------------------------------
36
+ 2AS_5222932 ------------------------------------------------------------
37
+ 2BS_5163353 TTTGATGCGGTTTATGCACATTACGCTTTTTCTAACTTGTTTCCCATATATTGCACACAA
38
+
39
+
40
+ 2BS_5245544 ------------------------------------------------------------
41
+ 2DS_5334799 ------------------------------------------------------------
42
+ 2AS_5222932 ------------------------------------------------------------
43
+ 2BS_5163353 CACAATATGTGTCACTAAACCGCGTCGATTTTGTCATATAAATATATGCGATGCAGAGTC
44
+
45
+
46
+ 2BS_5245544 ------------------------------------------------------------
47
+ 2DS_5334799 ------------------------------------------------------------
48
+ 2AS_5222932 ------------------------------------------------------------
49
+ 2BS_5163353 ATTACAAATACCATGGCATATTTTCAGTACAGCTAACATGGCAGATCCAGTACAAACAAC
50
+
51
+
52
+ 2BS_5245544 ------------------------------------------------------------
53
+ 2DS_5334799 ------------------------------------------------------------
54
+ 2AS_5222932 ------------------------------------------------------------
55
+ 2BS_5163353 ACGGCAGATCCAGCATAATTAACATGGCAGATCCAGCATAACTAACATGGCAAATCCAGT
56
+
57
+
58
+ 2BS_5245544 ------------------------------------------------------------
59
+ 2DS_5334799 ------------------------------------------------------------
60
+ 2AS_5222932 ------------------------------------------------------------
61
+ 2BS_5163353 ACAACTAACATGGCAGATCCAGTGCAACTAGCATTGCATATTTTTCAGTATAAAATAGTA
62
+
63
+
64
+ 2BS_5245544 ------------------------------------------------------------
65
+ 2DS_5334799 ------------------------------------------------------------
66
+ 2AS_5222932 ------------------------------------------------------------
67
+ 2BS_5163353 TGGCATATTTTTAGTACAAAATAGCATGGCATATTTTTAGTATAAAATAGCATGGCAGAT
68
+
69
+
70
+ 2BS_5245544 ------------------------------------------------------------
71
+ 2DS_5334799 ------------------------------------------------------------
72
+ 2AS_5222932 ------------------------------------------------------------
73
+ 2BS_5163353 TAACTACATATAACATGGCAGATTAAGTACCCATACCATGGCAAATTAAGTACCCATAAC
74
+
75
+
76
+ 2BS_5245544 ------------------------------------------------------------
77
+ 2DS_5334799 ------------------------------------------------------------
78
+ 2AS_5222932 ------------------------------------------------------------
79
+ 2BS_5163353 ATGGCAGATTAAGTACCAACAATATGGCAACTACATTTACCCATTCAATGCATTCTCCTT
80
+
81
+
82
+ 2BS_5245544 ------------------------------------------------------------
83
+ 2DS_5334799 ------------------------------------------------------------
84
+ 2AS_5222932 ------------------------------------------------------------
85
+ 2BS_5163353 CAACTTCTGAAGCCCCTCTAGAGTCATTATCCCAAATCAAAAAAGTTCACAGCATATAGG
86
+
87
+
88
+ 2BS_5245544 ------------------------------------------------------------
89
+ 2DS_5334799 ------------------------------------------------------------
90
+ 2AS_5222932 ------------------------------------------------------------
91
+ 2BS_5163353 GTACAAAACAAATGTCCACAATGACCATGTCACAGTGCCCCAACTTTTGCTTACGGATTG
92
+
93
+
94
+ 2BS_5245544 ------------------------------------------------------------
95
+ 2DS_5334799 ------------------------------------------------------------
96
+ 2AS_5222932 ------------------------------------------------------------
97
+ 2BS_5163353 CCCGTCCCTTTCTTCGTTTTCTTGTGTTTTGCTTGAATCTCCAATCCCGATTTTTACCTT
98
+
99
+
100
+ 2BS_5245544 ------------------------------------------------------------
101
+ 2DS_5334799 ------------------------------------------------------------
102
+ 2AS_5222932 ------------------------------------------------------------
103
+ 2BS_5163353 ATCTCTCTTGGACGACCCTTTGTGATGGAACGGGGTGGGTTCCTGACCTGGGTTTGTGTG
104
+
105
+
106
+ 2BS_5245544 ------------------------------------------------------------
107
+ 2DS_5334799 ------------------------------------------------------------
108
+ 2AS_5222932 ------------------------------------------------------------
109
+ 2BS_5163353 CTTGCTGTTCCAGATCCTATCTCAGAGTTTTCAAATGATGGCCCCATGGATGAAGGCACA
110
+
111
+
112
+ 2BS_5245544 ------------------------------------------------------------
113
+ 2DS_5334799 ------------------------------------------------------------
114
+ 2AS_5222932 ------------------------------------------------------------
115
+ 2BS_5163353 CTTGATGTGCGGGGGAACCGGTGTAAGGCTTCCTCAGCTTTCCTCTTCTTGATCTCATCA
116
+
117
+
118
+ 2BS_5245544 ------------------------------------------------------------
119
+ 2DS_5334799 ------------------------------------------------------------
120
+ 2AS_5222932 ------------------------------------------------------------
121
+ 2BS_5163353 AGCTCTCTTTTCAGGGCCTTCCTGTGTTTTTCTGCGACTCTCGTTGTCTCATCACTCTTG
122
+
123
+
124
+ 2BS_5245544 ------------------------------------------------------------
125
+ 2DS_5334799 ------------------------------------------------------------
126
+ 2AS_5222932 ------------------------------------------------------------
127
+ 2BS_5163353 CACGCTTCATCAATTAGCTCAGCATAGTTCTTTGTCAACACAACATGCCTCACGGCTTCC
128
+
129
+
130
+ 2BS_5245544 ------------------------------------------------------------
131
+ 2DS_5334799 ------------------------------------------------------------
132
+ 2AS_5222932 ------------------------------------------------------------
133
+ 2BS_5163353 ATGGTTGCCTCAGGTCTCTCGTCATGCACAGCCAGAACTGCATTTGTTGTCTGCGGCGCA
134
+
135
+
136
+ 2BS_5245544 ------------------------------------------------------------
137
+ 2DS_5334799 ------------------------------------------------------------
138
+ 2AS_5222932 ------------------------------------------------------------
139
+ 2BS_5163353 AACGCGTCGTCAGCGTCCCAAGTCCATCGCCACCTTATGAAATGGCGGGGCATGCGTGTC
140
+
141
+
142
+ 2BS_5245544 ------------------------------------------------------------
143
+ 2DS_5334799 ------------------------------------------------------------
144
+ 2AS_5222932 ------------------------------------------------------------
145
+ 2BS_5163353 ACAGCGTTCTCCATTACTTTCAGTATGTGACAACACACAATGTCGTCCCGTTCAAACTTG
146
+
147
+
148
+ 2BS_5245544 ------------------------------------------------------------
149
+ 2DS_5334799 ------------------------------------------------------------
150
+ 2AS_5222932 ------------------------------------------------------------
151
+ 2BS_5163353 CAGCATTGGCAGTAGTATTGCCTTGTTCGATTGAGGCTTTCACGAAGTAGTTCCTTCCTT
152
+
153
+
154
+ 2BS_5245544 ------------------------------------------------------------
155
+ 2DS_5334799 ------------------------------------------------------------
156
+ 2AS_5222932 ------------------------------------------------------------
157
+ 2BS_5163353 TGTCCGGGTCTTCAGGTTCTGAATCCGACATGCCCAAAATAGAACACACCTTGAACGTAT
158
+
159
+
160
+ 2BS_5245544 ------------------------------------------------------------
161
+ 2DS_5334799 ------------------------------------------------------------
162
+ 2AS_5222932 ------------------------------------------------------------
163
+ 2BS_5163353 GTTCGTCCGCCTGGAAAGCCGTGAACATGCTGGCACGCTTTATTTCTTCCTTGAATCTGC
164
+
165
+
166
+ 2BS_5245544 ------------------------------------------------------------
167
+ 2DS_5334799 ------------------------------------------------------------
168
+ 2AS_5222932 ------------------------------------------------------------
169
+ 2BS_5163353 AAGTTTTGTGTGTTTTCTATTAAACTATCGTGTGATCTTTTTTTGTAGCATCTTATGTTG
170
+
171
+
172
+ 2BS_5245544 ------------------------------------------------------------
173
+ 2DS_5334799 ------------------------------------------------------------
174
+ 2AS_5222932 ------------------------------------------------------------
175
+ 2BS_5163353 TCATGGAAATAGAAATAGATTTTTGTTTGAACATGGCAAACATAGTATACTAAACATGGC
176
+
177
+
178
+ 2BS_5245544 ------------------------------------------------------------
179
+ 2DS_5334799 ------------------------------------------------------------
180
+ 2AS_5222932 ------------------------------------------------------------
181
+ 2BS_5163353 AAACATAGTGCACTAAACATGGCAAACATAGTACACTGAACATGGCAACTGCAGTAAACT
182
+
183
+
184
+ 2BS_5245544 ------------------------------------------------------------
185
+ 2DS_5334799 ------------------------------------------------------------
186
+ 2AS_5222932 ------------------------------------------------------------
187
+ 2BS_5163353 ATACAAGGCAACTGTATTGCATTTTCAACTGACCATTGTCATTTCCACACCAACACTCCT
188
+
189
+
190
+ 2BS_5245544 ------------------------------------------------------------
191
+ 2DS_5334799 ------------------------------------------------------------
192
+ 2AS_5222932 ------------------------------------------------------------
193
+ 2BS_5163353 CACTGGAAGCCCTTTGCATAAAACATGGCAACTGAATTTTTATTGAACATGGCATCTACA
194
+
195
+
196
+ 2BS_5245544 ------------------------------------------------------------
197
+ 2DS_5334799 ------------------------------------------------------------
198
+ 2AS_5222932 ------------------------------------------------------------
199
+ 2BS_5163353 GTTGAGTAAACATGGCAACTGCATTTTTCAACAAACATGGAAGTTTTGCATTTTTAGAAA
200
+
201
+
202
+ 2BS_5245544 ------------------------------------------------------------
203
+ 2DS_5334799 ------------------------------------------------------------
204
+ 2AS_5222932 ------------------------------------------------------------
205
+ 2BS_5163353 ACATGGCAACTGCATTTCATCAAATGTGTCTAGAATATAACGTTTTTCAGTTGACATTGG
206
+
207
+
208
+ 2BS_5245544 ------------------------------------------------------------
209
+ 2DS_5334799 ------------------------------------------------------------
210
+ 2AS_5222932 ------------------------------------------------------------
211
+ 2BS_5163353 CATTTGCATACCAACATGCCCCAATGGCAGTACAGTGCATTAAACATGGCAACTGCACTT
212
+
213
+
214
+ 2BS_5245544 ------------------------------------------------------------
215
+ 2DS_5334799 ------------------------------------------------------------
216
+ 2AS_5222932 ------------------------------------------------------------
217
+ 2BS_5163353 CATTAAACATGACAAACAAATTTTTCATTAAACATGGCAACTGCAATTGAGTAAGCATGG
218
+
219
+
220
+ 2BS_5245544 ------------------------------------------------------------
221
+ 2DS_5334799 ------------------------------------------------------------
222
+ 2AS_5222932 ------------------------------------------------------------
223
+ 2BS_5163353 CAAACAGTATTTCATTACACATGGCAACTGCATATCATGGCAACTGCATTGCACCCTATA
224
+
225
+
226
+ 2BS_5245544 ------------------------------------------------------------
227
+ 2DS_5334799 ------------------------------------------------------------
228
+ 2AS_5222932 ------------------------------------------------------------
229
+ 2BS_5163353 AGGCACCTACTGCCTTAGTGCTTTTTTTGCAAATAAGACTGTAATGCAACTGACTTACTT
230
+
231
+
232
+ 2BS_5245544 ------------------------------------------------------------
233
+ 2DS_5334799 ------------------------------------------------------------
234
+ 2AS_5222932 ------------------------------------------------------------
235
+ 2BS_5163353 GTTAAAGATCTTGTTTGTGTATATCTTGCTCATTTGCCTCTCCATCGGTAAATACGTTAG
236
+
237
+
238
+ 2BS_5245544 ------------------------------------------------------------
239
+ 2DS_5334799 -------------------------------------GCGACACCTGGACCAGCGGCGAG
240
+ 2AS_5222932 ------------------------------------------------------------
241
+ 2BS_5163353 CAATTTTGGCTGCTTTAGCGCGGTGGTAGCTTCTTGCTGCAGCTCAGATCCCAGAATTTT
242
+
243
+
244
+ 2BS_5245544 ------------------------------------------------------------
245
+ 2DS_5334799 TTGTACCGCAGGCCGGGGCCGGGCGGCGCCTCCGTCCCCTGCTCCTGCTCCTGCGGGGAC
246
+ 2AS_5222932 ------------------------------------------------------------
247
+ 2BS_5163353 TTGTTGCAAAGCTGTGTACTGCTTGACAAACTGTAGCAATGAGTTGCCAGGGCTCACGTA
248
+
249
+
250
+ 2BS_5245544 ------------------------------------------------------------
251
+ 2DS_5334799 CCGGCCTCCGGCAGCTCCGTCGACACGGCCATTTCGTCACTCTGAACGGGCGGGCCGGCG
252
+ 2AS_5222932 ------------------------------------------------------------
253
+ 2BS_5163353 CCGCTTCAAAACAGCATTGAACCCCTCGCTGCACTGCGTAGTCTGCAGAAAGGGAAAGAA
254
+
255
+
256
+ 2BS_5245544 ------------------------------------------------------------
257
+ 2DS_5334799 GAGGGGAGTGAGGACGGCAGGTGGGTGGGTGGAGACAAATCGGCGGAGACGAAGGCGAGG
258
+ 2AS_5222932 ------------------------------------------------------------
259
+ 2BS_5163353 GCACTGCATGAAGTAGACTGGCACCCAGTACATTCGCTTCTCCCACAGGTTAGCAAGCAT
260
+
261
+
262
+ 2BS_5245544 ------------------------------------------------------------
263
+ 2DS_5334799 TGGAAGACGATCGGCGGAGGTGGCGGTATTTATAGATGGGATCTTGGTGGCTCCTCTGTT
264
+ 2AS_5222932 ------------------------------------------------------------
265
+ 2BS_5163353 CTTGTTGTCTTGGACTTGATATGTTTCAATCATGGCCATCCAGCTCCTTTCAAACTCCTC
266
+
267
+
268
+ 2BS_5245544 ------------------------------------------------------------
269
+ 2DS_5334799 TGATTCTGTTGCCAAGGGGGAGAAAGAGACGGCGACATTGAGGACGAGCAGAGGGCGACA
270
+ 2AS_5222932 ------------------------------------------------------------
271
+ 2BS_5163353 CACCGTCAAGTTGTGGTCCATGCACAGCTCGAACGCCTTGTGGAGCTCTGGACGGTCAGC
272
+
273
+
274
+ 2BS_5245544 ------------------------------------------------------------
275
+ 2DS_5334799 TTTGGAGCATCATTAGTCAGTGATGATTGCATTTAATCAGTATATTTGGGAATTTAATTA
276
+ 2AS_5222932 ------------------------------------------------------------
277
+ 2BS_5163353 AAAGAACGGTCCTAGCGTCTCTTCAGCCCTCTTTATAATGTGCCACCTGCAGTGCCTGTG
278
+
279
+
280
+ 2BS_5245544 ------------------------------------------------------------
281
+ 2DS_5334799 CTGCCCATTTATCAGTTCAGATATGTACATCGTCTTTAATGTGGATATTTATTTGAGGGA
282
+ 2AS_5222932 ------------------------------------------------------------
283
+ 2BS_5163353 CACTGCCAACGGAAATACCTCCTATATGCCTGCACGCATGCTGAAATCCTGGTCTGTTAT
284
+
285
+
286
+ 2BS_5245544 ------------------------------------------------------------
287
+ 2DS_5334799 GTAATAAGCAAAGATTGTTACAGAGTTTTTCCTTTTTTTTTTGAAATTTTCGAAAATATG
288
+ 2AS_5222932 ------------------------------------------------------------
289
+ 2BS_5163353 TATGTTCATCGGAGCAAGTCCATCCATGCACTCCAAGAAGGTCTTGAACAACCAAACGTA
290
+
291
+
292
+ 2BS_5245544 ------------------------------------------------------------
293
+ 2DS_5334799 TTCGACGTGGCAAAAAAAAAGACCGTAATAGCTGGCGAACGTTCGTTGTGAGGGGTGGTA
294
+ 2AS_5222932 ------------------------------------------------------------
295
+ 2BS_5163353 CCCATCCGTGTCTTCGTTCCGAACGAGCCCGCAGCCGAACTGCAATGACTGATTGTGGTT
296
+
297
+
298
+ 2BS_5245544 ------------------------------------------------------------
299
+ 2DS_5334799 TTGCGAACATTTTTGCTGACAGTTTTTTCAGAGACACATGACAATTTTTTTAGATACGCA
300
+ 2AS_5222932 ------------------------------------------------------------
301
+ 2BS_5163353 ATTTATTCCTATGAACGGAGCGCATGGCATCTTGTACATATTAGTCAGATACATCGCGTC
302
+
303
+
304
+ 2BS_5245544 ------------------------------------------------------------
305
+ 2DS_5334799 TGACGGTTTCTGGAAAGAAGACTGCGGCAAAAACAAGCAGAATTAGCCATCTCCTACCAC
306
+ 2AS_5222932 ------------------------------------------------------------
307
+ 2BS_5163353 GAATGAAATGCAATCTCGAAAATGTTTGTAGGCTCTCCTTGCAGCACCATCCACCCAATA
308
+
309
+
310
+ 2BS_5245544 ------------------------------------------------------------
311
+ 2DS_5334799 CTAAAAATGCCTTAAGAAATTGTTCGCTTGTCACCCTCCTCCCAGGAAACGTTCGCTTGT
312
+ 2AS_5222932 ------------------------------------------------------------
313
+ 2BS_5163353 CATGTTCCTGACACGGTCCTCATCGTCCAATCTTATCCTGTAGAAGAAATCTGGATCTTC
314
+
315
+
316
+ 2BS_5245544 ------------------------------------------------------------
317
+ 2DS_5334799 TAGTATTTTTGAAAGAAAAGGGCCCCACTCAAATTTTGGATCTTTTTGTTTCCATTCATT
318
+ 2AS_5222932 ------------------------------------------------------------
319
+ 2BS_5163353 CTTCGCTTTCTCATCGAAGTAGGCCATTGTGACCTCTATGTCAGCAAGCTTGCTCTCTCT
320
+
321
+
322
+ 2BS_5245544 ------------------------------------------------------------
323
+ 2DS_5334799 CGTTTTGGAGCGGTGTAGGGGAGACAGACGAATTTTGAAGATAGAATTTGTGACATTTGG
324
+ 2AS_5222932 ------------------------------------------------------------
325
+ 2BS_5163353 ATGGTACTTGGCCTGTAGGTTTGTGACGTCAGCTGGTATGTACGGCATGCTACTCAGTTT
326
+
327
+
328
+ 2BS_5245544 ------------------------------------------------------------
329
+ 2DS_5334799 TTTGGAGCATCATCATCATCGCCAATTGGAATGCACACTGAATTAAATTTTGCGAGATAT
330
+ 2AS_5222932 ------------------------------------------------------------
331
+ 2BS_5163353 CCCCTTTTTGCTGGATGAGTGATAGTATCTGGACCATTCTTGATGGACCGATGTTACAAT
332
+
333
+
334
+ 2BS_5245544 ------------------------------------------------------------
335
+ 2DS_5334799 GGCATTCTATTTTCATAAGTTCTTATTACAAATCATCATGATCTCCATAACACATACGCG
336
+ 2AS_5222932 ------------------------------------------------------------
337
+ 2BS_5163353 CATGTAGCAGCTTTACGAATTGCCTTTCGACTGGGGTGAACCCTCTGTGGGCGGTCAGAA
338
+
339
+
340
+ 2BS_5245544 ------------------------------------------------------------
341
+ 2DS_5334799 AGTTGGAAGGAGA-------TTTGTGCACACACGAGATGAGCCGACAGAGATGAGAAGGG
342
+ 2AS_5222932 ------------------------------------------------------------
343
+ 2BS_5163353 ATTTGACCAGATCAAACTTCTTTATGAGTTTGTGGTTGTGCTCGTCAAAATACTCAGTGA
344
+
345
+
346
+ 2BS_5245544 ------------------------------------------------------------
347
+ 2DS_5334799 GTGAAAGATAGGAGAGTCGAATATGCCGATTTGAAGAATCACCAAACTACATATAGTAAA
348
+ 2AS_5222932 ------------------------------------------------------------
349
+ 2BS_5163353 CCACATATTGTGTTCCATCTATGTTTAGCTTACACCGGACAGGGCAACCCGTCTTGAGAA
350
+
351
+
352
+ 2BS_5245544 ------------------------------------------------------------
353
+ 2DS_5334799 CAATTATTAATTTTCATGAGGGATATTCCGGCATTTTAACAATGGTTGCTAGGTACTAAG
354
+ 2AS_5222932 ------------------------------------------------------------
355
+ 2BS_5163353 TGATCCCTCTCTTTCGTTTCGGAACGACAGGCGCAACACCTTTCCCTTTCTTGTTCCTTC
356
+
357
+
358
+ 2BS_5245544 ------------------------------------------------------------
359
+ 2DS_5334799 GATTTCTTTTCTGTGGGACTTGGCAGTCCTTCCACTCAATTTGTTCAACACACAAGTGGG
360
+ 2AS_5222932 ------------------------------------------------------------
361
+ 2BS_5163353 GTACCTTGTGGCACCACATCTCACCTCTGTTGTACTCATTAGTTTTCTTAATTTTTCTAT
362
+
363
+
364
+ 2BS_5245544 ------------------------------------------------------------
365
+ 2DS_5334799 TATATATATGGCAGATACGGTAT--AATATAAGACACAAAGGCACAGAAGAGGATTTGTG
366
+ 2AS_5222932 ------------------------------------------------------------
367
+ 2BS_5163353 GGTATTCGGTGTTGACGGCAAACCCATGAAACTTTGCATATGTCTGGTAGAATTCCTTTG
368
+
369
+
370
+ 2BS_5245544 ------------------------------------------------------------
371
+ 2DS_5334799 GCTCTCGGGTGCCACGCACCCCTATATGAATATAGCATTAAAAACATATTGCAAATTTTA
372
+ 2AS_5222932 ------------------------------------------------------------
373
+ 2BS_5163353 CTTCTGCAAACGATTCAAATCTTTGCCCAACATATGGTGGCTGAGGTACCATGATATCTG
374
+
375
+
376
+ 2BS_5245544 ------------------------------------------------------------
377
+ 2DS_5334799 AAAAATTCTAAAATTTTGGAATATGAACCTGGGTGCCTGTTGTACACTCGTCTTCAACTT
378
+ 2AS_5222932 ------------------------------------------------------------
379
+ 2BS_5163353 GTTGCCCATCATCTTCATCCCCTTATGCCTCGTCGTCAGTTTCATCATTCATTTCAGTAT
380
+
381
+
382
+ 2BS_5245544 ------------------------------------------------------------
383
+ 2DS_5334799 CGTGGGGAATGAGTGCCCGTGTTCATCTCAGTAAAAAGGACAAAAAAAATCGTATGTATA
384
+ 2AS_5222932 ------------------------------------------------------------
385
+ 2BS_5163353 CGGCAGCAGTTTCATCGATTCAAAGGGGTGGCTGTGGGAATTGCTGGAATGATTGCCATT
386
+
387
+
388
+ 2BS_5245544 ------------------------------------------------------------
389
+ 2DS_5334799 GAAAAAGATAATTGGATGTAATGTATGTCAGACCGGAACTCCAGTGCCATGGATACCACG
390
+ 2AS_5222932 ------------------------------------------------------------
391
+ 2BS_5163353 TCTGACACTGACTCGGCATTATTTGCGGCATGATTGTCTGCTGGCTGGGGGAACGCGTCT
392
+
393
+
394
+ 2BS_5245544 ------------------------------------------------------------
395
+ 2DS_5334799 GGCAACCATTCCCAGCGAAAATGAAACAAGTGTGCAATCAATGGTCACCTAGGTTTGATA
396
+ 2AS_5222932 ------------------------------------------------------------
397
+ 2BS_5163353 TCTGTGCGCTCAGAGCTTCCCGCAGTAGATGTGCCCGCGCCGCTGTTCACTGTAGTTGTA
398
+
399
+
400
+ 2BS_5245544 ------------------------------------------------------------
401
+ 2DS_5334799 TCCTAAAATATCTGATTTTTGTGAAATTTTCTGATATTTTCTTAATGCTAGTTTCATATA
402
+ 2AS_5222932 ------------------------------------------------------------
403
+ 2BS_5163353 GGCCCTGTAATGGAAAAAACAGGTACGGGAGTAAGATTTTTTGTTTGAATAACATGTTTA
404
+
405
+
406
+ 2BS_5245544 ------------------------------------------------------------
407
+ 2DS_5334799 GGGGTACGTGACACTCGGGTGCTCCAATGCATTTCCCACAAGGGCACACGACCTTATCCC
408
+ 2AS_5222932 ------------------------------------------------------------
409
+ 2BS_5163353 TCGCAACGGATGACATTAACGTCGAGTGATTTGGCATTACATCATTCGAATAGCAAGATG
410
+
411
+
412
+ 2BS_5245544 ------------------------------------------------------------
413
+ 2DS_5334799 TGTCAAAAGACTCATCCTACATTGATAAATATGACTTGGCAGTGGGGCCAGCAACAGCAA
414
+ 2AS_5222932 ------------------------------------------------------------
415
+ 2BS_5163353 TCAGTTTGCGCGTGGACATGTGTAGCAAATGTAGCTGTCTAGTCATGGCAGTTACAGTTC
416
+
417
+
418
+ 2BS_5245544 ------------------------------------------------------------
419
+ 2DS_5334799 GATGAGCGTCCCAACATCCCCTTGTTCTTTCTTTGGAGGATCGATGTTCCTCCATCCAAC
420
+ 2AS_5222932 ------------------------------------------------------------
421
+ 2BS_5163353 AACAAACATGGCAACCACTGTTTGCCAATGCACGACAACAAGCTCCTTTTTTTAGTACGA
422
+
423
+
424
+ 2BS_5245544 ------------------------------------------------------------
425
+ 2DS_5334799 ATTGCTTGGTTGATTGCCACAAGGACGCAGGGCTGAGATTCTCGGTCCTGGGATTTTGGA
426
+ 2AS_5222932 ------------------------------------------------------------
427
+ 2BS_5163353 AGACTTGGGTTCTATATGCATGGCAGCTGCAGTCCTGCATTCATGCAAACACTGCTACCA
428
+
429
+
430
+ 2BS_5245544 ------------------------------------------------------------
431
+ 2DS_5334799 ATTTTGCTCGCAACTTGCAGCGCAGCTGCGTCCCTGTCCTTCCTAGTGAATCACCTTCGC
432
+ 2AS_5222932 ------------------------------------------------------------
433
+ 2BS_5163353 ACAAATGGCAATCACTGTGTTCTAGCAACAAAACTACTGCATTATAAGATTGATCTCACT
434
+
435
+
436
+ 2BS_5245544 ------------------------------------------------------------
437
+ 2DS_5334799 CCGTTGTTTGGGGCATAGGACAAATACACCCAGCTAATCATAGATTCATAGGGAGGGGGT
438
+ 2AS_5222932 ------------------------------------------------------------
439
+ 2BS_5163353 AGGCGAAATGTGTTCAACCATTAGTGATGCATACATGCTTTTAGCAGTTGGCAATTTTTC
440
+
441
+
442
+ 2BS_5245544 ------------------------------------------------------------
443
+ 2DS_5334799 CATAATCCTGGCTAGCTTTCACCGTTAGCGGCAGCTAGCTGGTTAATCATGCAGGCTCAC
444
+ 2AS_5222932 ------------------------------------------------------------
445
+ 2BS_5163353 AAAGACAATACATGACTCATTTTGCACGCAACCACTTTTCAGTGTTTTATGCTTCGTTCT
446
+
447
+
448
+ 2BS_5245544 ------------------------------------------------------------
449
+ 2DS_5334799 ACGAGGCTAGCGGCCCCCTAGTAGAGTCCAAAATGGACCTTTCCTCTGTTTTACCATCTC
450
+ 2AS_5222932 ---------------------------USERSRAMIREZRDOCUMENTSPHDDATABASE
451
+ 2BS_5163353 TGTCCACCATCACTGCTTCAATTCTTTTTTTGGCACGTGCTTTTTTTTGCCACCAAAACA
452
+
453
+
454
+ 2BS_5245544 ------------------------------------------------------------
455
+ 2DS_5334799 CGTCTGAGAAAGTGACAAGATGTGGCATCTTAGTAGTTGTTGTTAACTGCAGAATGCTCC
456
+ 2AS_5222932 SIWGCSAS-AB-K-CONTIGSFALONGERTHANFA-CAACAACAACAACAACAACAACAA
457
+ 2BS_5163353 AATGT-AGTGCTG-TTTTGTGGTTCAGTTTTTTTCCTTACCTTGTTGTGCTGCATGTGAC
458
+
459
+
460
+ 2BS_5245544 ------------------------------------------------------------
461
+ 2DS_5334799 CACCATGAAACCTTTGATTTTCATTCTAAAAGGACACCTTCGATTTTCCGAAAAAATGAC
462
+ 2AS_5222932 CAACAACAACAA-CAACAACAACAACAACAACAACAACAACAACAACTAAAAGATATCG-
463
+ 2BS_5163353 CATCTTGTGTGGTCTGTGACACCAAAATGACGTGCTCCACCTGCAATTTGTGAATCTTGC
464
+
465
+
466
+ 2BS_5245544 ------------------------------------------------------------
467
+ 2DS_5334799 ATTGCGATATTTCCTCCCTTTGCGAAAGTGGGGGCGATTTGGGGATGTGTTCGTAGGATC
468
+ 2AS_5222932 -GGGAGGCGGATACACAGCTTACATCACACCCCGTGC-T---ACAAGCA-ACTAAAGATT
469
+ 2BS_5163353 CACGAGACGTTTGCCCGGTTACCACCACTGTAATAACGT---GTAAGCATAGTAGTGGTT
470
+
471
+
472
+ 2BS_5245544 ------------------------------------------------------------
473
+ 2DS_5334799 AGCAGAGTGCGAGTGTCCTCACTACTTAGTGGACTAGGAACACCAATTACCATTCAGCAT
474
+ 2AS_5222932 GGAAAA-----AGAGAAGCCCGGTCGCA-TAGTGAGAAGTCTTCCATCTCGAAACATGTG
475
+ 2BS_5163353 GGTCAATTCATGGCAAATGCAGTTTGTGCTAGCACGGGAACTGTAGTTGCCCCTGATGTG
476
+
477
+
478
+ 2BS_5245544 ------------------------------------------------------------
479
+ 2DS_5334799 GGATGGTGGGCTATCTC--AAAAACAATGAACAAAGACTAGGAACACCAATTTTTAGGAG
480
+ 2AS_5222932 CGAAGAAGAAGATCGC---CAAGGGAAATGCCA----ACTGACTTGGCAACAAAC----T
481
+ 2BS_5163353 GCAACTGCAATTTTCCTGGCATGGCAACTGTAGTTGCATTGGTATGGCAACTGCAGTTGT
482
+
483
+
484
+ 2BS_5245544 ------------------------------------------------------------
485
+ 2DS_5334799 TGTCAGCTAGCTGGTTAATCATGCAGGCCAACACGAGGTTAGGAGCTCCCTAGAGTCTAG
486
+ 2AS_5222932 CCCCGTACGCCGACCCTGAGACACAAGAAGACGCCACACCCCCTACACCCTCACTGAAGG
487
+ 2BS_5163353 TCCTCCATGGCAACTACAATTGTCATGGCATAACAACTGCAGTTACACTGGCATGGCAAC
488
+
489
+
490
+ 2BS_5245544 ------------------------------------------------------------
491
+ 2DS_5334799 AATAGATCATTTTCTCCGTTTCACTACCTTTATCTCACAACACAAAACATTTTTAAGAGT
492
+ 2AS_5222932 AGGACTTTACCCCTCGTCCTAGCT---------CAAAGGACGCCGCACCATTGAGCGAGG
493
+ 2BS_5163353 TGCAGTTCTTCCTCCGTGGCAACTGCGGTTGTCCATAGATGGCAACAACAGTTGTCCAGG
494
+
495
+
496
+ 2BS_5245544 ------------------------------------------------------------
497
+ 2DS_5334799 CGTAATGATCGGAAGACGAATGCCACACATGACACCCTTGTTTTTCCTTGCGAAATACA-
498
+ 2AS_5222932 GATGTGTTCAAC-----CTAGAACAGGAATGGTGTGGTCTTGAGGTCACAGGAGCCGAG-
499
+ 2BS_5163353 GATGACAACTGCAGTTATTTAACCATGTCAATTGTAGATGTCCAGTCATGGAAAGTGCAA
500
+
501
+
502
+ 2BS_5245544 ----------CGCCACTGCCTCCAATTCA-------CACATTCATGAAGTTCCGGATGTA
503
+ 2DS_5334799 -CATGACATTCGAGCCCCCCTCCAACTCA-------CACATTAATGAAGTTCCAGGTATA
504
+ 2AS_5222932 ----CACATACACGCGACCCGCCACACCGCAGCGGGCAAACCATGGTGGCCATGAAGAAA
505
+ 2BS_5163353 TTGTCAACCATGCTCCTTCTGCTAATTGAGCATCCGCAACTTCACTTTTTTATGGACTCA
506
+ * * * ** *
507
+
508
+ 2BS_5245544 GTTTTGGTCAAGTTTGAACCCATTTTT-----CCCTTTCAAAAGTCTTCATTACAAGTGT
509
+ 2DS_5334799 GTTTTGGTCAAGTTTGAACCCATTTTT-----CCCTTTCAAAAGTCTTCATTACACGTGT
510
+ 2AS_5222932 CGTCCGCACAATGCCTGGAACAAGAAGGGGGAACCTGTAGGAGAGGTTCACGGAAATCGA
511
+ 2BS_5163353 CCTGTGTATGACGTCGATGGCAGGTACATGGGTGCTGCCTGAT-GCCACGTGCTGCATGA
512
+ * * * ** ** * * *
513
+
514
+ 2BS_5245544 GAAGATCTCTGTCTATA--------GATTTGCCTAAAATGTACATTCATACATTCTGCTA
515
+ 2DS_5334799 AAAGATCAGTATCTATA--------GATT-GTCTAAAATATACTCGTAAAGA--------
516
+ 2AS_5222932 AGAAGCGGCAAGCT-CAAGGCGGACAACAAGCACACAATATAAGCACAAGGAAGAAGGAC
517
+ 2BS_5163353 AGGCTCTGCATTTTTCACCCCTGATAACTCGTGAGTCCTTTTGCCATTTTTTTGCATGTT
518
+ * * * * * *
519
+
520
+ 2BS_5245544 GGTTCTACTCCCTCCGTCTCAAAATAAGTGACTCAACTTTGTACTAGCTCTAGTATAAAT
521
+ 2DS_5334799 --------------------AATATAAG------AGCGTTACAGAGG-----GAGCACAT
522
+ 2AS_5222932 CGGGTAACTACATGCCGCCACGAACAAACGTCGGGAAGGGGAACCCTTTCCCCTC-CCAC
523
+ 2BS_5163353 CATTT---TTCATGTCCACACCAATATGTGCTCTTTTTTCGTATGCATTACCTTGATTAG
524
+ * * * *
525
+
526
+ 2BS_5245544 TTGTACTAAGCTCAAGACACTTATTCTGGGACGAAGGGACTATAATGTAATTATATATTG
527
+ 2DS_5334799 TCATA----------------TATTCTGTTAGG---------TTTTATAGTTATATATCG
528
+ 2AS_5222932 CCAGGTTCAAGGGT--------GATGAACCACCGACGAATAGGGCAGCG--AATACCTC-
529
+ 2BS_5163353 CCATATTAGCTAGTTG-----AAGTTGGCTACCCGTACATTTGTCAGTGTTAGCGCCTTG
530
+ * * *
531
+
532
+ 2BS_5245544 CGGGAGAAAATAATAGTCACATTTATGTGTG-TCTTTTTT--CCGCGGGGGCACATTTTA
533
+ 2DS_5334799 TGGTAGAAAGTAATAGTCACATTTATGTGTG-TGTTTTTTTGTTGCGGGGGCACATTT-A
534
+ 2AS_5222932 --ACTGAAGATAGTATACTCAACGCTTCACA-CAAACTGTCGCTCGAAACCCACAACAAC
535
+ 2BS_5163353 TGACTGAACTTGCCACGGGGGCCCCCTGAGAGTGTTTTGGTCATAAGAACCTGCGAAAAA
536
+ *** * * * *
537
+
538
+ 2BS_5245544 TGTTT-TCTTGATTGTGTGGATGTGCAAAACGCCATCTTTTTTCGGAGACAAGCACTTCA
539
+ 2DS_5334799 TGTTT-TCTTGATTGTGTGGATGTGCAAAACACCATCTTTTTT-GGAGACAAACACTTCA
540
+ 2AS_5222932 CACAA-AATTAACCACATGGCACCACACACCAGCCTC-TCCTTGCCAA-------ACGAC
541
+ 2BS_5163353 AATGACAATGCATGACATAA-GTAGAATGTCATCTTCATCGTTACGAAGATGGCAACTGT
542
+ * * * * * * ** * ** *
543
+
544
+ 2BS_5245544 ACTCCCCCTCTTTTGGGGGGATGGAAAGATATAGATGAGAAATT----TTTGGCTGGCTA
545
+ 2DS_5334799 ACTTCCCCTCTTTTTGGGGGATGGAAAGATATAAATGAGAAATT----TTTGGCTGGCTA
546
+ 2AS_5222932 TCCCCCAGGGAGGTAACAACACCGAGCGTCGCCGCCGCCGCATC--CACAGGGATAACAG
547
+ 2BS_5163353 TCTCTTCTTTTTGTTATCACGCGTCATACCAATGTCTGCATATTGTTCTAGTAGTGGCAG
548
+ * * ** * *
549
+
550
+ 2BS_5245544 TGACATGCCCGG----------------TTGGAGTTTTGCTCCCCAAAAGTCTTCACATG
551
+ 2DS_5334799 TGACATGCCCGGATG----AAGGCCCCGTTGGAGTTTTGCTCCTCAAAAGTCTTCACATG
552
+ 2AS_5222932 GAATTAACCTTGGGTCAAAGAAGAGGGGTAAGGAGAAGGGATCACGTCGGTGCCTCCAAG
553
+ 2BS_5163353 CAAC-GGCCCTGCAGAGATGAGTTGACTGTACTCTGATGCATCCCAAGGGGGCGTTTCTG
554
+ * ** * * * * * *
555
+
556
+ 2BS_5245544 ACCTC-----ACTCCATGGAGTCATGGCAGCT---TGGTGCAGTCGATGCCGACGTTGCT
557
+ 2DS_5334799 ACCTC-----ACGCCATGGACTCATGGTAGCT---TGGTCCAGTCGATGCCGACGTTGCT
558
+ 2AS_5222932 GAGGGGAGCAGCGCCAGCAGGCGGTGTCACCGACGTGGTCGGCCAAGCCACCAAAGGATT
559
+ 2BS_5163353 GCCTTTGAGAACCCCAAGTATCAGCGCCATCTTTGTGATTCATTCTTTCCGTGTCTCACT
560
+ * *** * * * ** * *
561
+
562
+ 2BS_5245544 CGTGACGAATCATCTTTCTCTCCATGCCTAGATTCCAACACAAATTTCAGGTTCACCTCA
563
+ 2DS_5334799 CATGATGAATCATCTTTTTCTCCATGCCTAGATTCCAACACAAATTTCAGGTTCACCTCA
564
+ 2AS_5222932 TCTCTCGAACCCAACTCACACCAC--CATGCCCGGCGATACAAGATC--ACCAC-CACGA
565
+ 2BS_5163353 TCTTTCCAATATGTTCTCAATCACTGCATGATCAAGAACGCATCAAC--AATCCACAAGA
566
+ * ** * * * * ** * * *
567
+
568
+ 2BS_5245544 ACCTCTTCATTCCCCGGATTATGTGCGTGCGATCGAGACAGTTTTCACATGCCCGGATTA
569
+ 2DS_5334799 ACCTCTTCATTCCCCGGATTATGTGCGTGCGATCGAGACAGTTTTCACA-----------
570
+ 2AS_5222932 GATCCGGCCGGAAGTGGAC--CAAATGGGAAAAAGGAGTGACCTTCAGATATGACGCCAG
571
+ 2BS_5163353 ATTGTATTCTTCTGCTGCTTGCAGATAGGGATGGCAAGCAACAGGTCAACTAGGTGGCAG
572
+ * * *
573
+
574
+ 2BS_5245544 TGTACCTAGCCAAAAAAATAATAATAACGCTG--CGATTTTTCCGCGTTTCGCGATCATC
575
+ 2DS_5334799 ------------AAAAAAT---------GTTG--CGATATTTCCGCGTAT----------
576
+ 2AS_5222932 -----AAGAACCGCCGGAGCAGACCGCCGAC---CATGAACCGCACCTG-TCGTCGCCGC
577
+ 2BS_5163353 CTATTGACAACGAAAGGTGGCAACTGTCGTTGTACACAAGTGGCAATTAATTTTTCCCAC
578
+ * * * *
579
+
580
+ 2BS_5245544 TATGTTGCCTTCGCGTGTGTGTTCATATCAATTTCGCGTGTTCCACTCGCAATCATGCGT
581
+ 2DS_5334799 ------------------------------------------------------------
582
+ 2AS_5222932 ACTGCCCACACGGCTGAGGACGCCGACCCTCTCGTGTGAGCATCGCCAGCCGCGAAGACG
583
+ 2BS_5163353 CCCCTTTATTCCAAAATTGTCCTTCCTCTCCTTTTTTAGGGATTCCTACTCATCCATTTG
584
+
585
+
586
+ 2BS_5245544 GC--TGCCTTTGCATATATTCCAATCGAATTCGTGTGTTCCATTCCTAGGATCCAAAGAG
587
+ 2DS_5334799 ----TGCCTTTGCATATATTCCAATCGAATTCATGGGTTCCTTTCCTATGATCCAAGGAG
588
+ 2AS_5222932 GCGTCGCCTCTCCAAGAAGGTTCGCCGC-C---TGGAGCCCAAAGCCCTCCGCCGAGACC
589
+ 2BS_5163353 CC--TACCCAACTACTTGTGTCAATCAAAC---TAGGAACTTAAGTTAATCTCAACACGT
590
+ ** * * * * *
591
+
592
+ 2BS_5245544 GCCCTCCGAGAAGTCCACCTGTCAGCGCGACGATGACGATGACGACACGCCGGCTCTGTA
593
+ 2DS_5334799 GCCCTCAGGGAAGTCCACCTGTCAGCGCGACGACGACGACGATGATGCGCCGGCTCTGTA
594
+ 2AS_5222932 GGAGCGACGAAATCCCCGTTGCCACCTTCACCGTAG--GCTGCG-CGGGGTTGCCCGGCA
595
+ 2BS_5163353 AGATCACAAAACTACTGGATCTCAGAACTACTGGTGTTGCCACC-CCCTATAGCATGG-A
596
+ * * * ** ** ** * *
597
+
598
+ 2BS_5245544 GCAAGTGCCAGGTGCCCGCGCTCCATGGCTTGCAAGGCGATGATGCAGGCAAGAAAAATG
599
+ 2DS_5334799 GCAAGTGCCAGGTGTCCACGCTCCATGGCTTGCAAGGCGATGATGCAGGCAAGATAAATG
600
+ 2AS_5222932 ACCAGTGGCGGACCTAGAA---TCATAGGCTTGGGGGTGCCATAGTTCAATGTTCACATT
601
+ 2BS_5163353 TCCAGTACAAGATCGGGGAGATTTTCAGCCTGAAGGATGAGAAGGATGA--GATCGGGAG
602
+ * *** * * * * * *
603
+
604
+ 2BS_5245544 A---------GTCAATAGTAGCAGAGCTTTCTCCTCCCGTGGAGTGCACAGACAGACAAT
605
+ 2DS_5334799 AATAGCACAAGTCAACAGTAGCAGAGCTTTCTCCTCCCGTGGAGTGCATAGACAAACAAT
606
+ 2AS_5222932 AA------ACGTCATCA-TAATCTCAATAAATAGTCTTAAAATAGCAACAACTTGATGAA
607
+ 2BS_5163353 AT------TTTTCACC--TGATTTTAGCTGATCGTCTCTGAAGGGCTGGATTGGAGTGGG
608
+ * *** * * ** *
609
+
610
+ 2BS_5245544 CTTTTGGAAACGGGGAGTTTTTAGATTAGACTTGGCGTGCAAGCGCCGGCGCTCCACATT
611
+ 2DS_5334799 CTTTTGGAGATGGTGAGTTTTCAGATTAGACTTCGCGTGCAAGCGCCGGCGCTCCACACT
612
+ 2AS_5222932 TATGTAGCGT----GAGGTATAGAGTAAAATTTATTTTACA---ACTTTGAAGGGGTGCC
613
+ 2BS_5163353 GGGCTGGGGCTGGGGAGGGTTGGGGTGTGGTTTGCGGTGGGTTTGCCCTACGAATCTGCT
614
+ * * *** * * ** * *
615
+
616
+ 2BS_5245544 TTTTTTTTCTTTCAAGATCGCATCAGCTAAACCTAAACGGCCGGTCAAGAACTGACAAAA
617
+ 2DS_5334799 TTTGTTT-----CAAGATCGCATCAGCTA---CTAAACGGCCGGTCAACAACTGACAAAA
618
+ 2AS_5222932 T-GGCACCC-------ACGGCCTCAAATTAGTTATGGCGGT-GGCCAAGGTTTGATATCA
619
+ 2BS_5163353 TTGGTTTCC-------ATGGCAACCAGAGAAGGCCGGCGAC-GGAGGTAGGTGTTTGAGA
620
+ * * ** * ** ** *
621
+
622
+ 2BS_5245544 ACACGCCGGCGGTTCACACTAACTAAATCCAAACGTACACTCTCTTTTCCCTTGAGTCAA
623
+ 2DS_5334799 ACACGCCGGCAGTTCACATTAACTAAATCCAAACGTACACTGCTTTTTTCCTTCAGTCAA
624
+ 2AS_5222932 TCTTGGAATC-GTCCACGGGAGC--GATTCGG-TGACCAAGGTCTTTTCTGTAAACTAAA
625
+ 2BS_5163353 GGTGGGGGAC-GATGGCGGCAGTCGAGAGAGG-CGATCGAGCGAGGACGGGAACGGCTGG
626
+ * * * * * * *
627
+
628
+ 2BS_5245544 ATCACTAGTTTATCGAACGCCTGCAGTTCTCACCTCGTATACAAATAGCAGATTGTCACC
629
+ 2DS_5334799 ATCACTAGTTTATCGGACGCCTGCAGTTCTCACCTCTTATCTGAG-AATAGAT-------
630
+ 2AS_5222932 CTTATTCCCTATGCTGGC-CTTATCAATTCCGAGTTAATCAAACCCATCAAAATCGA---
631
+ 2BS_5163353 GTCGTGCGGGCAGCGGGT-CGTGTGG--CCCGGATGGAGCAGTGCGGACGGGGTTGCCAC
632
+ * * * * * *
633
+
634
+ 2BS_5245544 AGACAAGCACGGCGCACATACAACAATATCATATTCTAGTAAAAAAAACAACAACAGGGC
635
+ 2DS_5334799 ---------------ATATACAAA------------TAGCAAA-----------------
636
+ 2AS_5222932 --ATTGAAGGAGCAAATTGATAAAATACGATTTTCTGCTTTGACACATCATCA-----TT
637
+ 2BS_5163353 ACACCGGACGTGCGGGCTGTGCAATTGCGCGCCCGGACGCGGTCGTGCGGGCGGGTTCCT
638
+ *
639
+
640
+ 2BS_5245544 AGGCATATACTCCCTCCGTCCAAAAATACTTGTCATCAAAATAGATAAAAGAGATGTATC
641
+ 2DS_5334799 -----------------------------TCGTCACCA-----GGCAAGCACGGCGCACA
642
+ 2AS_5222932 GTTCTCCTTTGATGGAACATCTTGACCATCAAACATCCAC---ATTTAACCCCTTAAAAG
643
+ 2BS_5163353 GTTCACGCCACACGAGGCGTGTGGGCGGGTTCGTATCCAT---GCCACACGTGTGGCAGT
644
+ * * *
645
+
646
+ 2BS_5245544 TAGAACTAAAATATGTCCCATTTTGATGACAAGTATTTCCAGACGGAGGGAGTATA-TTG
647
+ 2DS_5334799 TACAATTA-----TATCATATTCTGGT---------------------------------
648
+ 2AS_5222932 AA-CAC-ATTCTACATTTAA-GCTAGCGCTTT---CTTCTG--------TCTTGC--CCC
649
+ 2BS_5163353 TATCGC-AACCCATAAAAAATACTAACAATTTATGCTTTTGACAATTCATCATGCTTCCC
650
+ * * * *
651
+
652
+ 2BS_5245544 TTAGGGTGTTGGAAGAAAAATATCATTGTAGCAGTATTGCT---GCCATACCAGCGTATC
653
+ 2DS_5334799 ------------AAGAAAAATATCGTCGTAGCAGTTTTGCTGCTGCCATACCAGCGTGTC
654
+ 2AS_5222932 CTTGCCAAAAACACAAGATATTCCACGCTGCCAAACACACCAATCGGAAAAAGGCAATTT
655
+ 2BS_5163353 CTTGCTAAAAGCACAAGATATTCCACGCTGCCTGACACGCGAAGCGGAAAA-GGCATTTT
656
+ * * * ** * * * * * * ** *
657
+
658
+ 2BS_5245544 ATGCGCTATACCGTGGCGCGCGACGGGAGC--GTGAGGGTTAGGGTTTATCATAGCGGGC
659
+ 2DS_5334799 ATGGGTTATACCGTGGCGCACGACGAGAGC--GTGAGGGTAAGGGTTTATCATAGCAGGC
660
+ 2AS_5222932 TCACT---TTTCATCGATTAGAAGCAGCTCCGAAAAGGAAAAGAAGCAACCATCTCTCCC
661
+ 2BS_5163353 TTTTTCACTTTCATCGATTAGAAGCAGCTCCGAAAAGGAAAAGAAACGACGAACTCTCCC
662
+ * * * * * * * *** ** * * * *
663
+
664
+ 2BS_5245544 TGAGC-GTTTCACCGGGGGCCCTCTGTTTTCACAGGCATGGACCGTGTATCAGAATATGT
665
+ 2DS_5334799 TGGGC-GTTTCACCAGTGGCCCTCTGTTTTCACAGGCATAGACCGTGTATCAGAATATGT
666
+ 2AS_5222932 CACCCCACCCCGGCCCTGCTCCCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
667
+ 2BS_5163353 CGT-----CCCGGCCCCGCTCCCCGCCACGCCAAGTCGACGGCCGCTCGCCGCCGCCCCT
668
+ * * * ** *
669
+
670
+ 2BS_5245544 ACAATTATTATGCCAAGACATGTAAAAGTAAATAAGGAAAGGAAGAGAATTTCCGCCAGG
671
+ 2DS_5334799 ACAATTATTGTGCTAAGAGATGTAAAAGTAAA-AGGAAAGAAAAGAGTATTTCCGCCAGG
672
+ 2AS_5222932 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN
673
+ 2BS_5163353 CCCTCCGCCGACCTCGGCCGTTCGGCCCCTCCCGCGGCTGGGGTGAACGGCGA-GCCCCC
674
+
675
+
676
+ 2BS_5245544 CGTAACTCTGATTCCCCC-GGCTCCTGCGGAAGACGA--CGACAGCCTCCTCATAGCCTG
677
+ 2DS_5334799 CGCAATTCTAATTCCCTCAGGCTCCTGCGGAAGACGA--CGACAGCCTCCTCATAGCCTG
678
+ 2AS_5222932 NNNNNNNNNNNNNNNNGTGGGCGGGGGTGAGTGGCGAGCCTCCCTCGCCGCCTTGCGCTG
679
+ 2BS_5163353 CTTGCTTCTCCTCTGTC------------------------------CTGCCCTGCACGG
680
+ * * * *
681
+
682
+ 2BS_5245544 CA----AACAGGGCGAAA-CGGTCAAATCATTGCAACTCTCTTTTACTTA------TTAT
683
+ 2DS_5334799 CA----AACAGGGCGAAA-CGGTCAAATGATTGCAACTCTCTTTTGTACAGGTAGTGCAT
684
+ 2AS_5222932 CACAGGAACAAGGCGAGAGCGATCGG--CGTCGGGATGCTGAGGCGGCGG-----CTGAG
685
+ 2BS_5163353 CA----AGCAAGGCGGGAGCGATCGG--CGTCGGGATGCTGAGGCGGCGG-----CTGAG
686
+ ** * ** **** * ** ** * * * ** *
687
+
688
+ 2BS_5245544 ATTAGATAGAAGAAGATGCCGGTATTGCTTAGTCA--AACGTGTCGAGAAACTAGCTACA
689
+ 2DS_5334799 CTTCATTAGAAGAAGATGCTGGTATTGCTTAGTCA--AACGTGTCAAGAAACTAGCTACA
690
+ 2AS_5222932 CTCCCTTCTCCTCCGATCCCCGTGCTCCTCCTCCGCCGTCGCTTCCTCCTACCAGCAGCA
691
+ 2BS_5163353 CTCCCTTCTCCTCCGATCCCCGTGCTCCTCCGCCGTCGCTTCCTCCTGCCACCACCAGCA
692
+ * * *** * ** * ** * ** ** * * **
693
+
694
+ 2BS_5245544 TGGAAAGGGTTCGGCGAGTCAGCTAGATGACAAAGTTAGCTACGTTGCAACCCCCTGGAC
695
+ 2DS_5334799 -GGCGAGGGTTCGGCGACTCAGCAAGATGACAAAGTTCGCAACGTAGCATCCTCCCGGAC
696
+ 2AS_5222932 --GCAGCACCTCCTCCTCCCCACCC-ACGCCGAGGTAACCCCCACGGTTCCCCTTTC-TT
697
+ 2BS_5163353 --GCACCACCTCCTCCTCCCCACCC-ACGCCGAGGTAACCCC-ACGGTTCCCCTTTCCTT
698
+ * ** * * * * * * * ** * * **
699
+
700
+ 2BS_5245544 CTCTTCTTCCTTATC-CATCAATCAACAAG---GCAGATGCTACTTTGTTCATTC--ATT
701
+ 2DS_5334799 CTCTTCTCCCTTATC-CATCAATCAACAAG---ACAAATGCTACTCTGCTCATT------
702
+ 2AS_5222932 TCCCTCCCGCGCATTTCGTCGAACGCCTCGCGCGCGCGCACAACGTGGCCGGACCGGATC
703
+ 2BS_5163353 TTCCTCCTGCGCATTTCGTCGAACGCCTCGCACGCGCGCACAACGTGGCCGGACCGGATC
704
+ * ** * ** * ** * * * * * * ** *
705
+
706
+ 2BS_5245544 TTGCTTGCCAGTTTGTCTTTCTTTATTGTGCACAATGAACACAAATGGCAAGGAT-CAGA
707
+ 2DS_5334799 TTGCTTGTCAGTTTGTCTTTCTTTATTGTGCGCAGTGAACACAAATGGCGAAGATTCAGA
708
+ 2AS_5222932 TGGCCTGCACTCCTTTCTCGCTCCGTTTGGT----TCAATGCGTGCCTGCCGTTCCTAGA
709
+ 2BS_5163353 TGGCGTGCTCGCCTCTCTCGCTCCATTGGGGG---TCAATACGTTCCTCTCGCTCCTAGA
710
+ * ** ** * *** ** ** * * ** * ***
711
+
712
+ 2BS_5245544 AATTCAGTCTCTTTCTACC----TACAAGCAATATCCTTTTGCTTATAGCGACGGCCTGC
713
+ 2DS_5334799 AATTCAATCCCTTGCCACCTACGTACAAGCAATACCCTTTTGCTTATAA--ATGTCCTAC
714
+ 2AS_5222932 TGCTCATCCGCCTG--ACTGTTTTCCTCGCAGAAACCGCCGGCCCTGAA------TCTGC
715
+ 2BS_5163353 TGCTCATCCGCCTG--ACTGTTCTCTTCGCAGAAACCGCCGGCCCCGAA------TCTGC
716
+ *** * * * ** * *** * ** ** * ** *
717
+
718
+ 2BS_5245544 CCTAGCTGCAATGGCAGGCTTGGTATAAA-GAACTCGTCATCACTTGTTAATGTATTGAA
719
+ 2DS_5334799 CCTGGCTGCAACGGCAGGCTTAGTATAAAAGAACTTGCCGTCACTTGTTAATGTATTGAA
720
+ 2AS_5222932 TCAGGCTCT--TCACATCCCTAGC-TGTACGTTTGTTCCCAAACCCGCATTCTTATTATT
721
+ 2BS_5163353 TCAGGCTCT--TCACGTCCCTAGC-TGTACGTTCGTTCCCAAGCCTGCATTCTTATTATT
722
+ * *** * * * * * * * * * * ****
723
+
724
+ 2BS_5245544 AAGTGTGGGTGCTGCAGCTTAGGCATT--TAATTGGAAGGGTTAGGATATGCTAAATATG
725
+ 2DS_5334799 AAGTGTGGGTGCTGCAACTTGGGCATT--TAATTGGAAGGGTTGGGATATGCTAAATATG
726
+ 2AS_5222932 TGTGACAACTAT-GCAGACTGCATGTGAATAATT-GGTGGTGTGTCCTCTGTTCATTCTG
727
+ 2BS_5163353 TGTGACAAATCTTGCAGAGTTCTTGTGAATAATTTGGCGATGTGCCGTCTGTTCATTCTG
728
+ * *** * * ***** * * * * ** * * * **
729
+
730
+ 2BS_5245544 TGAAGACTGAAAA-CTTTCAGAACTA----ATTTGGCACTAGAAAATGATATGCAAGCAA
731
+ 2DS_5334799 TGAGGACTGAAAAGCTTTCAGAACTTCAGTAATTGGGACTAGAAAATGATATGCAAGCAA
732
+ 2AS_5222932 TAGGGAACCGATGGGGACAGGCCGTTCATCGCTTTTGTCTTGGGTAGTTTTTCCCTGCTT
733
+ 2BS_5163353 TAGGGAAGCGATGGTGACAGGCCGTTCATCGCTTTCGTCTTAGGTAATTCTTCCCTGCTT
734
+ * ** * * * ** ** * * * **
735
+
736
+ 2BS_5245544 TCAGAAATCAGATGATGCAAGAATGTGCACCTCCTTCAGGAGAGCGGACATAGTCACAGT
737
+ 2DS_5334799 TCAGAAATCAGATAATGCAAGAATGTGCACCTCCTTCAGGAGAGCGGACATAGTCACAGA
738
+ 2AS_5222932 TTACTCCCAAAATGTAGCAGGATTGTTGTTTTCGTTCTTCGAAACGGAGGGCAAAGCTTT
739
+ 2BS_5163353 TTACTCCCAGAATGT---------------------------------------------
740
+ * * **
741
+
742
+ 2BS_5245544 ATATGAGAGGAATTCCGTGTCTTGAACATCAGGATTTACCTTAAGGTGGAAAACAA----
743
+ 2DS_5334799 ATATGAGAGGAGTCTCGTGTCTTAAGCATCAGGATTTACCTTAAGGAGGAAAACAA----
744
+ 2AS_5222932 GCAGGGTCGGTTTTACATTTATAAAGTTCCATGCATATCTGTGTAGAGTAAACCGAGGAA
745
+ 2BS_5163353 ------------------------------------------------------------
746
+
747
+
748
+ 2BS_5245544 --CTTGC--------------GAACTGCTTCAAA---------GATTTCATCTTCAGT--
749
+ 2DS_5334799 --CTTGC--------------GAACTGCTTCAAA---------GATTTCATCTTCAGT--
750
+ 2AS_5222932 CCCTTGCCTCAATGATAATCAGTGCTGTTTCACATTTATAATCGCTTTCGTCTTAGGTAA
751
+ 2BS_5163353 ------------------------------------------------------------
752
+
753
+
754
+ 2BS_5245544 ---------TCCCGTTGCGTTTATCTG----CATGGAGTTCAACAAGTACTCTTAGACAC
755
+ 2DS_5334799 ---------TCCCGTTGCGTTTATCTG----CATGGAGATCAACAAGTAGTCTTAGACAC
756
+ 2AS_5222932 AAAAATAAATCTACTAGTACTCCCCCAATATTGCAGGGTTGGTTTCACATTTACATACTC
757
+ 2BS_5163353 -------------------------------TGCAGGGTTGGTTTCACATTTATAAATTC
758
+ * * * * * * * *
759
+
760
+ 2BS_5245544 CCTAAAGGTCAAGTCTCGAAAATAAATAAGACATCCTACAGATCCTGAATACGAGTGATA
761
+ 2DS_5334799 CCTAAAGGTCAAGTCTCGAAAATAAATAAGACATCCTACAGATCCTGAATATGAGTGATA
762
+ 2AS_5222932 CATGCATAACCTGTGTAGAGTAAATTGAGGATCACTTCTATCA-ATGATAACCAGTGCTG
763
+ 2BS_5163353 CATGCATATCCTGTGTAGAGTAAACTGTGGATCCCTTCCCTCCCATGACAATAAGTGCTG
764
+ * * * * ** * ** * * ** * * *** * **** *
765
+
766
+ 2BS_5245544 TACAGAATATGTTACTGTGTTATATCCCTGATATGT-ACCCCTTCTGAAGAGATTAGCAA
767
+ 2DS_5334799 TACAGAATATGTTACTATGTTATATCCCTGATATGT-ACCCCTTCTGAAGAGATTAGCAA
768
+ 2AS_5222932 TTTCAAGTTGG--ATTGTGTTGTGGCGCTCAAATTTCAGTTGTTCACACGA-CTAATCAA
769
+ 2BS_5163353 TTTCAAGTTGG--ATTGTGTTGTGGCGCTCAAATTTCAAATGTTCACATGATCTAATCAA
770
+ * * * * * * **** * * ** * ** * * *** * ** * * ***
771
+
772
+ 2BS_5245544 TCTCTTCCAAAATGAGTGAATTGCAGACACTCATCTAATATCAAATAAATAGGCAGATCT
773
+ 2DS_5334799 TCTCTTCCAAGATGAGTGAATTACAGACACTCATCTAATATCAAATAAATAGGCAGATCT
774
+ 2AS_5222932 GATCCTGCATATAGGGGGACCTGGGAGTGGGAAAGGAACG-CAATGTAGTAGGATCGCTT
775
+ 2BS_5163353 GATCCTGCATGTAGGGGGACCTGGGAGTGGGAAAGGAACG-CAATGTAGTAGGATCGCTT
776
+ ** * ** * * ** * * ** *** * **** *
777
+
778
+ 2BS_5245544 CTGATCTCAC-TCCCCTCCCCACACCATAGAAAAATGGTCTTACGGTTATATGAATTCAG
779
+ 2DS_5334799 CTGATCTCAC-TCCCCTCCCCACAACATAGAAAAATGGTCTTACGGTTATATGAATTCAG
780
+ 2AS_5222932 CGGATTTTGGATTTGCTCATGTGAGTGCTGGTGACCTTCTACGGAATGAAATAGCTTCTG
781
+ 2BS_5163353 CGGATTTTGGATTTTCTCATGTGAGTGCTGGTGACCTTCTGCGCAATGAAATATCTTCGG
782
+ * *** * * *** * * * * * ** *** *
783
+
784
+ 2BS_5245544 AACATGA----GGGAATCGCATCCTGGC-TCTACCCCTCTG------TCCTATGACTCCC
785
+ 2DS_5334799 AACACGA----GGGAATCGCATCCTGGC-TCTGCCTCTCTG------TCCTATGATTCCC
786
+ 2AS_5222932 GCACTGATCATGGGTAATTCTTCTTTCCGTTTGATCCTCTGACA--GCCTTATAATGACC
787
+ 2BS_5163353 GCACTGATCATGGGTAATACCTCTTTCCGTTCAATCCTCTGATATAGCCTTATAATGACC
788
+ ** *** * * ** * * * ***** * *** * **
789
+
790
+ 2BS_5245544 AGGACATACTATCCTGCTATTTATACTTAGGTGACCCATATGTTTGAGGTTTCT---GAA
791
+ 2DS_5334799 TGGAAACACTATCCTGCTATTTATACATTGGTAACCCATATGTTTGATGTTTCT---GAA
792
+ 2AS_5222932 CACACGCACATGCATGGT-TCGGTGAATTGATTTTTCAGTTTCATGGCATTTGCCAGGGA
793
+ 2BS_5163353 CACACGCACATGCATGGT-TCGGTCAATTGATATGTCAGTGCCATGGCATTTGCCAGGGA
794
+ * ** * ** * * * * * * ** ** *** * *
795
+
796
+ 2BS_5245544 ATATATATTGGCATTTGTACATGTTCAAGAGAATAAGCCAGGTATAGTTTAATGCTGCAC
797
+ 2DS_5334799 ATATATATTGGCATTTGTAAAAGTTCAAGAAAATAAGCCAGGTATAGTTTAATGCTGCAC
798
+ 2AS_5222932 GTGGATCCTAGAGATAATAAGGGAA-GGGAGGATTGTTCCATCAGAGATAACTGTTGAAC
799
+ 2BS_5163353 GTGGATCCTAGAGATAATAAGGGAA-GGGAGGATTGTTCCATCAGAGATAACTGTTGAGC
800
+ * ** * * * ** * ** ** * * ** * * ** ** *
801
+
802
+ 2BS_5245544 C--TTAAGAGACCTTTTTAATCAACTTCTAGAACAAAGGGTAGAGCT--CTGTTTCC---
803
+ 2DS_5334799 A--TTAAGAAGCCTTTTAAATCAACTTCTAGAATAAAGGGTAGAGCT--CTGTTTCC---
804
+ 2AS_5222932 TCGTCAGAAAAGCAATTGAATCAAGCTCTGCTAAAAGGGTTCTTATTGATGGTTTCCCAA
805
+ 2BS_5163353 TTGTCAGAAAAGCAATTGAATCAAGCTCTGCTAAAAGGGTTCTTATTGATGGTTTCCCAA
806
+ * * * * ** ****** *** * ** ** * * ******
807
+
808
+ 2BS_5245544 -GTGTGAAGGAAATAAGAAAATGCATGTCAAAAA-GTAAAGGTACGGTTCA---TAAAAG
809
+ 2DS_5334799 -GTGTAAAGGAAATAGGAAAATGCACGTCAAAAAAGTAAAGGTACGGTTCA---TAAAAG
810
+ 2AS_5222932 GGTGTGAGGAAAACAGAATTGCCTTTGAAAAAATAGTAAGTTTTCTGTTTGGCTTGCATT
811
+ 2BS_5163353 GGTGTGAGGAAAACAGAATTGCCTTTGAAAAAATAGTAAGTTTTCTGTTTGGCTTGCATT
812
+ **** * * *** * * * **** **** * * *** * *
813
+
814
+ 2BS_5245544 AAAGGTACAAGAAGTGCTCCTGTCCAGGACACTCTGCG-TAAAATAAATAGATTAATTAC
815
+ 2DS_5334799 AAAGGTACAAGAAGTGCTCCTGTCCAGGACACTCTGCG-TAAAATAAATAGATTAATTAC
816
+ 2AS_5222932 ACTGGTCCAGAACTTTCTATTGATTGAAATAGTATGTGATGAGATGGATAAGTCCATGCT
817
+ 2BS_5163353 ACTGGTCCAGAACTTTCTATTAATTGAAATAGTATGTGATGAGATGGATAAGTCCATGAT
818
+ * *** ** * * ** * * * * ** * * * ** *** * **
819
+
820
+ 2BS_5245544 CTTGT---GTGCCTTTCCCCTTGAAGAGTAGTACTCAACAACAGGAAGAT--TCAAACTC
821
+ 2DS_5334799 CTTGT---GTGCCTTTCCCCTTGAAGAGTAGTACTCAACAACAGGAAGAT--TCAAACTC
822
+ 2AS_5222932 GTTCATCAGTTTCTGTTCAATTTTTGGGAAGG--CTAATAACAGGTGAATCTTCACGTTT
823
+ 2BS_5163353 GTTCAACAGTTTCTGTTCAGTTTTCGGGAAGG--CTGATAACAGGTGAATCTTCAAGTTT
824
+ ** ** ** * * ** * * ** * ****** ** *** *
825
+
826
+ 2BS_5245544 TCGAACACTTTTAGACGC-------------TTCTTGATTGTCTCAATGTTATC---ATC
827
+ 2DS_5334799 TCGAACACTTTTAGACGC-------------TTCTTGATTGTCTCAATGTTATC---ATC
828
+ 2AS_5222932 TCTAGCGCTCTTGGCTGTAACCATTTGTGTATACACACTTGTCTTTACATTTTT-ACGCC
829
+ 2BS_5163353 TGTAGCTCTTGTGACTGTAAC-ATTTGTGTATACACACTTGTCTTTACATTTTTTATGCC
830
+ * * * ** * * * * ****** * ** * *
831
+
832
+ 2BS_5245544 AACTCGT---CCCTAAGACGCATACATGAGATAATCGAAAAAAACAGAAACAAATAGAGA
833
+ 2DS_5334799 AACTCGT---CCCTAAGACGCATGCATGAGATAATCGAAAAAA-CAGAAACAAATAGAGA
834
+ 2AS_5222932 AATATGCTGGCCCAAAACTGCCAGTGTACAGTA--TGCAATCAGCAGTTTCTTATGCATG
835
+ 2BS_5163353 AATATGCTGGCCCAAAACTGCCAGTGTACGGTA--TGCAATCAGCAGTTTCTTATGTATG
836
+ ** * *** ** ** * ** * ** * *** * ** *
837
+
838
+ 2BS_5245544 GATCAATTTAATGTGATATATT-----TTATTTATTATTTTTAAAGGAAACTCCACTAGA
839
+ 2DS_5334799 GATCAATTTAATGTGATATATT-----TTATT-ATTATTTTTAAAGGAAACTCCACTAGA
840
+ 2AS_5222932 TATTTTCTTTTAGTAGCAAATCAGTAACTATGTCCTGCTCTAGAGTGATGCACTTTTAGG
841
+ 2BS_5163353 TATTTT-TTTTAGTAGCAAATCAATAACTATGTCCTGCTCTAGAGTGATGCACTTTTAGG
842
+ ** ** ** * ** *** * * * * ** * * ***
843
+
844
+ 2BS_5245544 GCATTAATGAATCTCCCATTATGATATGCACGAGCTACACTGATGAGATTAGTGTTTCTT
845
+ 2DS_5334799 GCATTAATCAACCTCCCATTATGATATGCACGAACTACACTGATGAGATTAGTGTTTCTT
846
+ 2AS_5222932 AT-TTATGCAGTAGTCCACAGT--TATGTCAGCCCCACTATGGTGGATGTATAGTTGCAT
847
+ 2BS_5163353 TT-TTATGCAGTAGTCCACAGT--TATGTTAGCCCCACTATGGTGGATGTATGGTTGCAT
848
+ *** * *** * **** * * ** ** ** ** *** * *
849
+
850
+ 2BS_5245544 CTCTTCAATTTAAATGA-CATATGAAGAAGAAAGAGCTACACTGATGAGATTAGTGTTTC
851
+ 2DS_5334799 CTCTTCAATTTAAATGA-CATATGAAGAAGAAA---------------------------
852
+ 2AS_5222932 CTCAACAACTACTACAAGCATTTATATCAAAGAA---------TGTGTGTGCTGTGGTCG
853
+ 2BS_5163353 CTCAACAACTAATACAAGCATTTATATCAAAGAAAA-------TGTGTGTTCTGTGGTCG
854
+ *** *** * * * *** * * * * *
855
+
856
+ 2BS_5245544 TTCTCTTCAATTTAGATGACATATGAAGAAGAAAATCATTTGTGGCAATCCAC--AAGGA
857
+ 2DS_5334799 ----------------------------------ATCATTTGTGGCAAACCAC--AAGGA
858
+ 2AS_5222932 GGCAATTAGAAGACACTGGCATACCAACTAAGATATGTTTCATTGTTGTCCACTCAATAA
859
+ 2BS_5163353 GGCAATAAGAAGACACTGGCATACCAACTAAGATATGTTTCATTGTTGTCCACTCAATAA
860
+ ** ** * * **** ** *
861
+
862
+ 2BS_5245544 ATATCCTTTAGGAATGTTAATATTTCATGTTA--GTTAAGAGAGAGGGAGTAATAAGAAG
863
+ 2DS_5334799 CTATCCTTTAGGAATGCTA-TATTTCATGTTA--GTTAAGAGAGAGGGAGTAATAAGAAG
864
+ 2AS_5222932 TTGCTAGTCAGATAGATGTAGATTGCATGATCCTGTTCTGATATGTTGACTCATAAATTT
865
+ 2BS_5163353 TTGTTAGTCAGATAAATGTAGATTGCATGGTCCTGTTCTGATATGTTGACTAATAAATTT
866
+ * * ** * *** **** * *** ** * ** * ****
867
+
868
+ 2BS_5245544 ATAATTGTCA--AAGCCGAAAGTAACGGCTGGGAAATAAAATCTTAGAAAAACACATATC
869
+ 2DS_5334799 ATGATTGTCA--AAGCCGAAAGTAACGGCTGGGAAATTAAGTCTTAGAAAAACACATATC
870
+ 2AS_5222932 CAGACTGGAACTGAACCAGACCTTGTGCTTTTCTTTGACTGTCCTGAGGATGAGATGGTT
871
+ 2BS_5163353 CAGACTGGAACTGAACCAGACCTTGTGCTTTTCTTTGACTGTCCTGAGGATGAGATGGTT
872
+ * ** * * ** * * * * ** * * *
873
+
874
+ 2BS_5245544 AAGTAAGTTCCGAATAAGAATTGAAAAATGTACAGTACT-TATATAGTGTATAAATA---
875
+ 2DS_5334799 GAGTAAGTTTCGAATAAGCATTGGGAAATGTACAATACT-TATATAGTGTATATATATCT
876
+ 2AS_5222932 AAACGTCTCCTAAGCCGTAACCAGGTTGGTCTTCGTATTATCTCTGGAGTAAATTGTGCT
877
+ 2BS_5163353 AAACGTCTCCTAAGCCGTAACCAGGTTGGTCTTTGTACTATCTCTGGAGTAAATTGTGCT
878
+ * * * * ** * * * * * *** *
879
+
880
+ 2BS_5245544 -GCACAATTTACTCCAGAGATAGTACAAAGACCAACCTGGTTACGGCTTAGGAGACGTTT
881
+ 2DS_5334799 AGCACAATTTACTCCAGAGATAGTACAACGACCAACCTGGTTACGGCTTAGGAGACGTTT
882
+ 2AS_5222932 AGATATATATACACTATATG-AGTACTGTACATTTCCCAATTCTTATTCGGAACTTACTC
883
+ 2BS_5163353 A----TTTATACACTATATA-AGTACTGTACATTTTTCAATTCTTATTCGGAACTTACTT
884
+ * *** * * * ***** ** * * * *
885
+
886
+ 2BS_5245544 AACCATCTCATCCTCAGGACAGTCAAAGAAAAGCACAAGGTCTGGTTCAGTTCCAGTCTG
887
+ 2DS_5334799 AACCATCTCATCCTCAGGACAGTCAAAGAAAAGCACAAGGTCTGGTTCAGTTCCAGTCTG
888
+ 2AS_5222932 CATATGTGATTTTCTGAGATTTTATTTCCCAGCCGTTACTTTCGGCTTTG--ACAATTAT
889
+ 2BS_5163353 GATATGTGTTTTTCTAAGATTTTATTTCCCAGCCGTTACTTTCGGCTTTG--ACAATTAT
890
+ * * ** * * * * * ** * * ** *
891
+
892
+ 2BS_5245544 AAATTTATTAGTCAACATATCAGAACAGGACCATGCAATCTACATTTATCTGACTAACAA
893
+ 2DS_5334799 AAATTTATTCATCAACATATCAGAACAGGACCATGCAATCTACATTTATCTGACTAGCAA
894
+ 2AS_5222932 CTTCTTATTACTCCCTCTCT--TAACTAA--CATGAAATAT-AGCATTCCTAAAGGATAG
895
+ 2BS_5163353 CTTCTTATTACTCCCTCTCTCTTAACTAA--CATGAAATATTAACATTCCTAAAGGATAT
896
+ ***** ** * * *** **** *** * * ** * *
897
+
898
+ 2BS_5245544 TTATTGAGTGGACAACAATGAAACATATCTTAGTTGGTATGCCAGTGTCTTCTTATTGCC
899
+ 2DS_5334799 TTATTGAGCGGACAACAATGAAACATATCTTAGTTGGTATGCCAGTGTCTTCTTATTGCT
900
+ 2AS_5222932 TCCTTG--TGGATTGCCACAAATGATTTTCTTCTTCATATGTCAT---------------
901
+ 2BS_5163353 TCCTTG--TGGATTGCCACAAATGATTTTCTTCTTCATATGTCATC--TAAATTGAAGAG
902
+ * *** *** * * ** ** * * ** **** **
903
+
904
+ 2BS_5245544 CGACCACAGAACACACATTTTCTTTGATATAAATGCTTGTATTAGTTGTTGAGATGCAAC
905
+ 2DS_5334799 TGACCACAGCACACACATTTTCTTTGATATAAATGCTTGTAGTAGTTGTTGAGTTGCAAC
906
+ 2AS_5222932 ------------------------------------------------TTAAATTGAAGA
907
+ 2BS_5163353 AAGAAACACTAATCTCATCAGTGTAGCTCTTTCTTCTTCATATGTCATTTAAATTGAAGA
908
+ ** * ** *
909
+
910
+ 2BS_5245544 CATACATCCACCATAGTGGGGCTAACAT-AACTGTGGACTACTGCATAAAACCTAAAAGT
911
+ 2DS_5334799 CATACATCCACCATAGTGGGGCTAACATTAACTGTGGACTACTGCATAAAACCTAAAAGT
912
+ 2AS_5222932 GAAGAA---ACACTAATCTAATTAGTGTAGTTCGTG------CATATCAAAATGGGAGGT
913
+ 2BS_5163353 GAAGAA---ACACTAATCTCATCAGTGTAGCTCGTG------CATATCATAATGGGAGAT
914
+ * * ** ** * * * *** ** * * * *
915
+
916
+ 2BS_5245544 GCATCACT-CTAGAGCAGGACATAGTTATTGATTTGCTACTAAAA-AAAATACATACATA
917
+ 2DS_5334799 GCATCACT-CTAGAGCAGGACATAGTTATTGATTTGCTACTAAAA-AAA-TACATGCATA
918
+ 2AS_5222932 TGATTAATGCTCTAGCGGAGTTTCCTTTCAAAA-------------ATATCACAT-TAGA
919
+ 2BS_5163353 TCATTAATGCTCTAGTGGAGTTTCCTTTAAAAATAATAAATAAAATATATCACAT-TAAA
920
+ ** * * ** ** * * ** * * * **** * *
921
+
922
+ 2BS_5245544 AGAAACTGCTGATTGCATACCGTACACTGGCAGTTTTGGGCCAGCATATTGGCATAAAAA
923
+ 2DS_5334799 AGAAACTGCTGATTGCATACTGTACACTGCCAGTTTTGGGCCAGCATATCGACGTAAAAA
924
+ 2AS_5222932 TTGATCTCTTTATT-GTTTTTGTTTTTT--CGATTAT---CTCATGTATGCGTCTTAGGG
925
+ 2BS_5163353 TTGATCTCTCTATTTGTTTCTGTTTTTTT-CGATTAT---CTCATGTATGCGTCTTAGGG
926
+ * ** *** * ** * * ** * * *** * *
927
+
928
+ 2BS_5245544 AT--GTAAAGACAAGTGTGTATACACAAATG-TTACAGTCACAAGAGCTACAAAACTTGA
929
+ 2DS_5334799 AAAAGTAAAGACAAGTGTGCATACACAAATGGTTACAGCCAAGAGCGCTACAAAACTTCA
930
+ 2AS_5222932 ACGAGTTGATGATAACATTGAGACAATCAAG-AAGCGTCTAAAAGTATTCGAGAGTTTGA
931
+ 2BS_5163353 ACGAGTTGATGATAACATTGAGACAATCAAG-AAGCGTCTAAAAGTGTTCGAGAGTTTGA
932
+ * ** * * * * *** * * * * ** * * * ** *
933
+
934
+ 2BS_5245544 AGATTCACCTGTTATCAGC--CTTCCCGAAAACTGAACAGAAACTGTTGAACATCATGGA
935
+ 2DS_5334799 AGATTCGCCTGTTATTAGC--CTTCC-AAAAATTGAACAGAAACTGGTGAACATCATGGA
936
+ 2AS_5222932 A--TCTTCCTGTTGTTGAGTACTACTCTTCAAGGGGAAAGGCACA---CAAGGTAATTAA
937
+ 2BS_5163353 A--TCTTCCTGTTGTTGAGTACTACTCTTCAAGGGGAAAGGCACA---CAAGGTAATTAA
938
+ * * ****** * ** * ** * * ** ** ** * ** *
939
+
940
+ 2BS_5245544 CTTATCCATCTCATCACATACTATTTCAATTAATAGAAAGTTCTGGACCAGTAATGCAAG
941
+ 2DS_5334799 CTTATCCATCTCATCACATACCATTTCAATTAATAGAAAGTTCTGGACCAGTAATGCAAG
942
+ 2AS_5222932 TCTATTTATTTTAT-GCCGAGTGTCCTGGACAGGAGCACTTCTTGTACCTTTCTTTTA--
943
+ 2BS_5163353 TCTATTTATTTTAC-GCAGAGTGTCCTGGACAGGAGCACTTCTTGTACCTTTCTTTTA--
944
+ *** ** * * * * * * ** * * ** *** * * *
945
+
946
+ 2BS_5245544 CCAAACAGAAAACTTACTATTTTTTCAAAGGCAATTCTGTTTTCCTCACACCTTGGGAAA
947
+ 2DS_5334799 CCAAACAGAGAACTTACTATTTTTTCAAAGGCGATTCTGTTTTCCTCACACCTTGGAAAA
948
+ 2AS_5222932 -TGAACCGTACCTTTACC-TTTTGACATGCATTTTCCTATTTCCTTCACAC----GGAAA
949
+ 2BS_5163353 -TGAACCGTACCTTTACT-TTTTGACATGCATTTTCTTATTTCCTTCACAC----GGAAA
950
+ *** * **** **** ** * * *** * ****** * ***
951
+
952
+ 2BS_5245544 CCATCAATAAGAACCCTTTTAGCAGAGCTTGATTCAATTGCTTTTCTGACAAGCTCAACA
953
+ 2DS_5334799 CCATCGATAAGAACCCGTTTAGCAGTGCTTGATTCAATTGCTTTTCTGACCAGTTCAACG
954
+ 2AS_5222932 CAG--AGCTCTACCTTCTGTTGTAGAAGTTGATCCAAAAGGCTTCTTAAT--GTGCAACA
955
+ 2BS_5163353 CAG--AGCTCTACCCTTTGTTCTAGAAGTTGATTAAAAAGGTCTCTTAAG--GTGCAGCA
956
+ * * * * * ** ***** ** * * * * * ** *
957
+
958
+ 2BS_5245544 GTTATCTCTGATGGAACAATCCTCCCTTCCCT-TATTATCTCTAGGATCCACTCCCTGGC
959
+ 2DS_5334799 GTTATCTCTGATGGAACAATCCTCCCTTCCCT-TATTATCTCCAGGATCCACTCCCTGGC
960
+ 2AS_5222932 TTAAACTATACCTGGCTTATTTTCTTGAACTTTTACAAATGCCAATATATATT---TGAG
961
+ 2BS_5163353 TTAAACTATACCTGGCTTATTCTCTTGAACATGTACAAATGCCAATATATATT---TCAG
962
+ * * ** * * ** ** * * ** * * * ** * * *
963
+
964
+ 2BS_5245544 AAATGCCATGGCACTGACATATCAATTGACCGA-ACCATGCATGTGCGTGTGGGTCATTA
965
+ 2DS_5334799 AAATGCCATGAAACTGACAAATCAACTCACCGA-ACCATGCATGTGCGTGCGCGTCATTA
966
+ 2AS_5222932 AAACATCAAACATATGGGTTACCAATGTATAAATAGCAGGATAGTGTTTCCAGGGAATCA
967
+ 2BS_5163353 AAACCTCAAACATATGGGTCACCTAAGTATAAATAGCAGGATAGTATGTCCTGGGAGTCA
968
+ *** ** ** * * * * * * ** * ** * * * *
969
+
970
+ 2BS_5245544 TAAGGCTATATCAGAGGATTGAACGGAAAGAGGTATTACCCATGATCAGTGCCCGAAGAT
971
+ 2DS_5334799 TAAGGTTAT--CAGAGGATTGAACGGAAAGAAGTATTACCCTTGATCAGTGCCAGCAGAT
972
+ 2AS_5222932 TAGGA------CAGAGAGGCAGA-GCCAGGATGCGATTCCC----TCGTGTTCTGAATTC
973
+ 2BS_5163353 TAGGA------CAGAGGGGTAGA-GCCAGGATGCGATTCCC----TCATGTTCTGAATTC
974
+ ** * ***** * * * ** * * *** ** * * *
975
+
976
+ 2BS_5245544 ATTTCATTGCGCAGAAGGTCACCAGCACTCACATGAGAAAATCCAAAATCCGAAGCGATC
977
+ 2DS_5334799 ATTTCATTCCGCAGAAGGTCACCAGCACTCACATGAGAAAATCCAAAATCCGAAGCGATC
978
+ 2AS_5222932 ATATAACTGCAAGACCATTTTTCTATGGTGTGGGGAGGGGAGT-GAGATCAGAGATCTGC
979
+ 2BS_5163353 ATATAACCGTAAGACCATTTTTCTATGGTGTGGGGAGGGGAGT-GAGATCAGAGATCTGC
980
+ ** * * * * * *** * * *** ** *
981
+
982
+ 2BS_5245544 CTACTACATTG-CGTTCCTTTCCCACTCCCAGGTCCCCCTACATGCAGGATCTTGATTAG
983
+ 2DS_5334799 CTACTACATTG-CGTTCCTTTCCCACTCCCAGGTCCCCCTACATGCAGGATCTTGATTAG
984
+ 2AS_5222932 GTATTTATTTGATATTAGATGAGTGTCTGCAATTCACTCATTTTGGAAGAAATTGCTAAT
985
+ 2BS_5163353 CTATTTATTTGATATTAGATGAGTGTCTGCAATTCACTCATTTTGGAAGAGATTGCTAAT
986
+ ** * *** ** * ** ** * * ** * ** *** * *
987
+
988
+ 2BS_5245544 ATCATGTGAACATTTGAAATTTGAGCGCCACAACACAAT--CCAACTTGAAACAGCACTT
989
+ 2DS_5334799 -TCGTGTGAACAACTGAAATTTGAGCGCCACAACACAAT--CCAACTTGAAACAGCACTG
990
+ 2AS_5222932 CTCTTCAGAAGGGGT-ACATATCAGGGATATAACACAGTAACATATTCTGTATACCACTC
991
+ 2BS_5163353 CTCTTCAGAAGGGGT-ACATATCAGGGATATAACACAGTAACATATTCTGTATATCACTC
992
+ ** * *** * * ** * ** * * ****** * * * * * * ****
993
+
994
+ 2BS_5245544 ATTGTCATGGGAGGGAAGGGATCCACAGTTTACTCTACACAGGATATGCATGGAATTTAT
995
+ 2DS_5334799 ATTATCATTG-ATAGAAGTGATCCTCAATTTACTCTACACAGGTTATGCATGGAGTATGT
996
+ 2AS_5222932 ATATTCAGGATCTGTAGGATGTCTT--ATTTATTTTTGAGACTTGACCTTTAGGGTGTCT
997
+ 2BS_5163353 GTATTCAGGATCTGTAGGATGTCTT--ATTTATTTTCGAGACTTGACCTTTAGGGTGTCT
998
+ * *** * * ** **** * * * * * * * * * *
999
+
1000
+ 2BS_5245544 AAATGTGAAACCAACCCTGCAACATTCTGGGAGTAAAAGCAGGGAAGAAT--TACCTAAG
1001
+ 2DS_5334799 AAATGTGAAACCAACCCTGCATTATTGGGGGAGTGCAGGTAGATTTTTTTTTTACCTAAG
1002
+ 2AS_5222932 AAGAGTA--------CTTGTTGAACTCC----ATGCAGATAAATGCAACGGGAACTGAAG
1003
+ 2BS_5163353 AAGAGTA--------CTTGTTGAACTCC----ATGCAGATAAACGCAACGGGAACTGAAG
1004
+ ** ** * ** * * * * * ** ***
1005
+
1006
+ 2BS_5245544 ACGAAAGCGATGAACGGCCTGTCACCATCGCTTCCCTACAGAATGAACAGACGGCACATC
1007
+ 2DS_5334799 ACGAAAGCGATTATAAATGTGAAAC-AGCACTGATTATCAT--TGAGGCAAGGGTTCCTC
1008
+ 2AS_5222932 ATGAAATCTTTGAAGCAGTTCGCAA-GTTGTTTTCCTCCTT---------AAGGTAAATC
1009
+ 2BS_5163353 ATGAAATCTTTGAAGCAGTTCGCAA-GTTGTTTTCCACCTT---------AAGGTAAATC
1010
+ * **** * * * * * * * * ** **
1011
+
1012
+ 2BS_5245544 GCCAAATTATTCACAAGAACTCTGCAAGATTTGTCACAAATAATAAGAATGCAGGCTTGG
1013
+ 2DS_5334799 AGTTTACTCTACACAGATATGC-ATGGAATTTATAA-ATGCAAAACCAATGC-----TGC
1014
+ 2AS_5222932 CTGATGTTTAAGACACGAAATTCCTCTCATTTACTGTGACTATGTCCGCTCTCCTGAAGG
1015
+ 2BS_5163353 CTGATGTTCAAGACACGGAATTCCTCTCATATACTGTGACTATGTCCGCTCTCCTGAAGG
1016
+ * *** * ** * * * *
1017
+
1018
+ 2BS_5245544 GAACGAACGTACAGCTAGGGACGTGAAGAGCCTGAGCAGATTCGGGGCCGGCGGTTTCTG
1019
+ 2DS_5334799 AAAATTACCTAAGACAAAAGCGATGAACGGCCTG-------TCACCATCGGT--TCCCTA
1020
+ 2AS_5222932 AGATGCACATT---CTTGCATCATCTGATTTCTGA------TTGCTTGCATATTATTTTC
1021
+ 2BS_5163353 AGGTGCACATT---CTTGCATCATCTGATTTCTGA------TTGCTTGCATATCATTTTC
1022
+ ** * * * *** * * *
1023
+
1024
+ 2BS_5245544 CGAAGAGAACAGTCAGGCGGATGAGCATCTAGGAGCGAGAGGAACGTATTGACCCCCAAT
1025
+ 2DS_5334799 CAGAATGA----------------------------------------------------
1026
+ 2AS_5222932 TAGTCCCAATTACTGTAGTTCTGAAAGCTTTTCAGTCCT---CACATATTTAGCATATCC
1027
+ 2BS_5163353 TAGTGCCAAAT----TAGTTCTGAAAG-TTTTCAGTCTT---CACATATTTAGCATATCC
1028
+ *
1029
+
1030
+ 2BS_5245544 GGAGCGAGAGAGGCGAGCACGCCAGATCCGGTCCGGCCACGTTGTGCGCGCGTGCGAGGC
1031
+ 2DS_5334799 ------------------------------------------------------------
1032
+ 2AS_5222932 CAACCCTC---AGTCCTCACATATATTGCAGCACCCACACTTTTTCAATACATTAACAAG
1033
+ 2BS_5163353 TAACCCTTCCAATTAAATGCCTAAGCTGCAGCACCCACACTTTT-CAATACATTAACAAG
1034
+
1035
+
1036
+ 2BS_5245544 GTTCGACGAAATGCGCAGGAGGAAAAGGAAAGGGGAACCGTGGGGTTACCTCGGCGTGGG
1037
+ 2DS_5334799 ------------------------------------------------------------
1038
+ 2AS_5222932 TGATGGCATGTTCTTTATACTAAGCCTGCCATTGCAGCTAGGGCAGGCCGTCGCTATAAG
1039
+ 2BS_5163353 TGATGACGAGTTCTTTATACCAAGCCTGCCATTGCAGCTAGGGCAGGCCGTCGCTATAAG
1040
+
1041
+
1042
+ 2BS_5245544 TGGGGAGGAGGAGGTGGTGCTGCTGGTGGTGGCAGGAGGAAGCGACGGCGGAGGAGCACG
1043
+ 2DS_5334799 ------------------------------------------------------------
1044
+ 2AS_5222932 CAGAAGGGTATTGCTTGTA--GGTACAAAGAGCTTGCGTTCCTGAATCCTTGCCATTTGT
1045
+ 2BS_5163353 CAAAAGGATATTGCTTGTA--GGTAGAAAGAGACTGAATTTCTGA-TCCTTGCCATTTGT
1046
+
1047
+
1048
+ 2BS_5245544 GGGATCGGAGGAGAAGGGAGCTCAGCCGCCGCCTCAGCATCCCGACGCCGATCGCTCCCG
1049
+ 2DS_5334799 ------------------------------------------------------------
1050
+ 2AS_5222932 GTTCACTGTGCACAATAAAGAAAGACAAACTGACAAGCAAAATGAA----CATGGTAGCA
1051
+ 2BS_5163353 GTTCATTGTGCACAATAAAGAAAGACAAACTGGCAAGCAAAATGAATGAACAAAGTAGCA
1052
+
1053
+
1054
+ 2BS_5245544 CCTTGCTTGCCGTGCAGGGCAGGACAGAGGAGAAGCAAGGGGGGCTCGCCGTTCACCCCA
1055
+ 2DS_5334799 ------------------------------------------------------------
1056
+ 2AS_5222932 TTTATCTTACTGATTGATGGATAAGGAAGAAGAGGTCCAGGATG-TTGCTACGTCGCAAA
1057
+ 2BS_5163353 TCTGCCTTGTTGATTGATGGATAAGGAAGAAGAGGTCCAGGGGG-TTGCAACGTAGCTAA
1058
+
1059
+
1060
+ 2BS_5245544 GCCGCGGGAGGGGCCGAACGGCCGAGGTCGGCGGAGGGAGGGGCGGCGGCGAGCGGCCGT
1061
+ 2DS_5334799 ------------------------------------------------------------
1062
+ 2AS_5222932 CTTTGTCATCTAGCTGACTCGCCGAACCCTCGCC-TGTAGC--TAGTTTCTCGACACGTT
1063
+ 2BS_5163353 CTTTGTCATCTAGCTGACTCGCCGAACCCTTTCCATGTAGC--TAGTTTCTCGACACGTT
1064
+
1065
+
1066
+ 2BS_5245544 CGACTTGGCGTGGCGGGGAGCGGGGCCGGGACGGGGAGAGTTCGTCGTTTCTTTTCCTTT
1067
+ 2DS_5334799 ------------------------------------------------------------
1068
+ 2AS_5222932 TGACTAAGCAACGCTAGCAACTTGCGGTTGTCCCAGCTTATGATAAAGATGCACTCCTAC
1069
+ 2BS_5163353 TGACTAAGCAATACCGGCATCTT-------------CTTCTATCTAATATA---------
1070
+
1071
+
1072
+ 2BS_5245544 TCGGAGCTGCTTCTAATCGATGAAAGTGAAAAAAAAATGCCTTTTCCGCTTCGCGTGTCA
1073
+ 2DS_5334799 ------------------------------------------------------------
1074
+ 2AS_5222932 TTTGTTGCTACATATACACAAGGTAGTTGCAATCATTTGACCATTTCACCCTGTTTG-CA
1075
+ 2BS_5163353 -----------ATAAGTAAAAGAGAGTTGCAATGATTTGACCGTTTCGCCCTGTTTG-CA
1076
+
1077
+
1078
+ 2BS_5245544 GGCAGCGTGGAATATCTTGTG---CTTTTAGCAAGGGGAAGCATGATGAATTGTCAAAAG
1079
+ 2DS_5334799 ------------------------------------------------------------
1080
+ 2AS_5222932 GGCTATGAGGAGGCTGTCGTC---TTCCGCGCGAGCGGGGGGAATTGGAATTACGCCTGG
1081
+ 2BS_5163353 GGCTATGAGGAGGCTGTCGTCGTCTTCCGCAGGAGCCGGGGGAATCAGAGTTACGCCTGG
1082
+
1083
+
1084
+ 2BS_5245544 CATAAATTGTTAGTATTTTTTATGGGTTGCGATAACTGCCACACGTGTGGCATGGATACG
1085
+ 2DS_5334799 ------------------------------------------------------------
1086
+ 2AS_5222932 CGGAAATTCTCTCTCCCTCTTTTCTTTTACCTTTACATCTCTTAGCATAATAATTGTACA
1087
+ 2BS_5163353 CGGAAATTCTCTTCCTTTCCTTA--TTTACTTTTACATGTCTTGGCATAATAATTGTACA
1088
+
1089
+
1090
+ 2BS_5245544 AACCCGCCCACACGCCTCGTGTG-GCGTGAACAGGAACCCGCCCGCACGACCGCGTCCGG
1091
+ 2DS_5334799 ------------------------------------------------------------
1092
+ 2AS_5222932 TATTCTGATACACGGACCATTCCTGTGAAAACAGAGGGCCCCTGGTGAAACGCCCAGCCT
1093
+ 2BS_5163353 TATTCTGATACACGGTCCATGCCTGTGAAAACAGAGGGCCCCCGGTGAAACGCTCAGCCC
1094
+
1095
+
1096
+ 2BS_5245544 GCGCGCAATTGCACAGCCCGCACGTCCGGTGTGTGGCAACCCCGTCCGCACTGCT--CCA
1097
+ 2DS_5334799 ------------------------------------------------------------
1098
+ 2AS_5222932 GCCTGCTATGATAAACCCTGACCCTTGCGCTCTCGTCACGCGCCACGGTATA-----CGA
1099
+ 2BS_5163353 ----GCTATGATAAACCCTAACCCTCACGCTCCCGTCGCGCGCCACGGTATAGCGCATGA
1100
+
1101
+
1102
+ 2BS_5245544 TCCGGGCCACACGACCCGCTGCCCGCACGACCCAGCCGTTCCCGTCCTCGCTCGATCGCC
1103
+ 2DS_5334799 ------------------------------------------------------------
1104
+ 2AS_5222932 TACTTCAG-ACTGCAGCAAAACTGCTACAACGATATTTTTTTTCTG-----CCAACACCC
1105
+ 2BS_5163353 TACGCTGGTATGGCAGCAATACTGCTACAATGATATTTTTCTTCCAACACCCTAACAATA
1106
+
1107
+
1108
+ 2BS_5245544 TCTCTCGACTGCC-GCCATCGTCCCCCACCTCTCAAACACCTACCTCCGTCGCCGGC---
1109
+ 2DS_5334799 ------------------------------------------------------------
1110
+ 2AS_5222932 TAC-------------AAATATATGTCTGC---------CGTGTTTT-------------
1111
+ 2BS_5163353 TACTCCCTCCGTCTGGAAATACTTGTCATCAAAATGGGACATATTTTAGTTCTAGATACA
1112
+
1113
+
1114
+ 2BS_5245544 CTTCTCTGGTTGCCATGGAAACCAAAGCAGATTCGTAGGGCAAACCCACCGCAAACCACA
1115
+ 2DS_5334799 ------------------------------------------------------------
1116
+ 2AS_5222932 ----TTTTACC-------AGGATAA-TATAGTTGTATG---------TATGTGCGCCGTG
1117
+ 2BS_5163353 TCTCTTTTATCTATTTTGATGACAAGTATTTTTGGACGGAGGGAGTATATGCCTGCCCTG
1118
+
1119
+
1120
+ 2BS_5245544 CCCCAACCCTC-----------CCCAGCCCCAGCCCCCCACTCCAATCCAGCCCTTCAGA
1121
+ 2DS_5334799 ------------------------------------------------------------
1122
+ 2AS_5222932 CTTGTGTTGTG-----------ACGAT-TTGCTGGGTATATATC----------------
1123
+ 2BS_5163353 TTGTTGTTTTTTTTACTAGAATATGATATTGTTGTATGTGCGCCGTGCTTGTCTGGTGAC
1124
+
1125
+
1126
+ 2BS_5245544 GACGATCAGCTAAAATCAGGTGAAAAATCTCCCGATCTCATCCTTCTCATCCTTCAGGCT
1127
+ 2DS_5334799 ------------------------------------------------------------
1128
+ 2AS_5222932 -------TATGGAGAGATGAGGTGAGAGCTGCAGGCGTCCGATAAACTAGTGATTTGACT
1129
+ 2BS_5163353 AATCTGCTATTTGTATACGAGGTGAGAACTGCAGGCGTTCGATAAACTAGTGATTTGACT
1130
+
1131
+
1132
+ 2BS_5245544 GAAAATCTCCCCGATCTTGTACTGGATCCATGCTATAGGGGGCTGGCAACACCAGTAGTT
1133
+ 2DS_5334799 ------------------------------------------------------------
1134
+ 2AS_5222932 GGAGGAAAAAGGCCGTGTACGTTTGGATTTAGTTAATGTGAACTGCCGGCGT--GTTATT
1135
+ 2BS_5163353 CAAGGGAAAAGAGAGTGTACGTTTGGATTTAGTTAGTGTGAACCGCCGGCGT--GTTTTT
1136
+
1137
+
1138
+ 2BS_5245544 CTGAGATCCAGTAGTTTTGTGATCTACGTGTTGATATTAACTTAAGTTCCTAGTTTGATT
1139
+ 2DS_5334799 ------------------------------------------------------------
1140
+ 2AS_5222932 GTCAGTTCTTGACCGGCCGTTTAGCAGTAGCTGATGCCATCTTCAAACGCTCGCCAAAAA
1141
+ 2BS_5163353 GTCAGTTCTTGACCGGCCGTTTAGGTTTAGCTGATGCGATCTTGAAAGAAAAAAAAAATG
1142
+
1143
+
1144
+ 2BS_5245544 GACGCAAGTAGTTGGGTAGGCAAATGGATGAGTAGGAATCCCTGAAAAAAGGAGATGAAG
1145
+ 2DS_5334799 ------------------------------------------------------------
1146
+ 2AS_5222932 AAAAAA------------------------------------------------------
1147
+ 2BS_5163353 TGGAGCGCCGGCGCTTGCACGCCAAGTCTAATCTAAAAACTCCCCGTTTCCAAAAGATTG
1148
+
1149
+
1150
+ 2BS_5245544 GACAATTTTGGAATAAAGGGGGTGGGAAAAATTAATTGCCACTTGTGTACAACGATAGTT
1151
+ 2DS_5334799 ------------------------------------------------------------
1152
+ 2AS_5222932 ------------------------------------------------------------
1153
+ 2BS_5163353 TCTGTCTGTGCACTCCACGGGAGGAGAAAGCTCTGCTACTATTGACTCATTTTTCTTGCC
1154
+
1155
+
1156
+ 2BS_5245544 GCCACCTCTCGTTGTCAGTAGCTGCCACCTAGTTGACCTGTTGCTTGC-CATCCCTATCT
1157
+ 2DS_5334799 ------------------------------------------------------------
1158
+ 2AS_5222932 ------------------------------------------------------------
1159
+ 2BS_5163353 TGCATCATCGCCTTGCAAGCCATGGAGCGCGGGCACCTGGCACTTGCTACAGAGCCGGCG
1160
+
1161
+
1162
+ 2BS_5245544 TCTCTGTGCAAGCAGCAGAAGAATACAATTCTTGTGGATTATTGATGCGTTCTTGATCAT
1163
+ 2DS_5334799 ------------------------------------------------------------
1164
+ 2AS_5222932 ------------------------------------------------------------
1165
+ 2BS_5163353 TGTCGTCATCGTCATCGTCGCGCTGACAGGTGGACTTCTCGGAGGGCCTCTTTGGATCCT
1166
+
1167
+
1168
+ 2BS_5245544 GCAGTGATTGAGAACATATTGGAAAGAAGCGAGCCACGGAAAGAATGAATCACGAAGATG
1169
+ 2DS_5334799 ------------------------------------------------------------
1170
+ 2AS_5222932 ------------------------------------------------------------
1171
+ 2BS_5163353 AGGAATGGAACACACGAATTCGATTGGAATATATGCAAAGGCAGCACGCATGATTGCGAG
1172
+
1173
+
1174
+ 2BS_5245544 GAGCTAATACTTGGGTTCTCAAAGGCCAGAAACGCCCCCTTGGGATGCATCAGAGTACAG
1175
+ 2DS_5334799 ------------------------------------------------------------
1176
+ 2AS_5222932 ------------------------------------------------------------
1177
+ 2BS_5163353 TGGAACACGCGAAATTGATATGAACACACACGCGAAGGCAACATAGATGATCGCGAAACG
1178
+
1179
+
1180
+ 2BS_5245544 TCAACTCATCTCTGCAGGGCCTTTGCTGCCACTACTAGA-ACAGTATACATGCATTGGTA
1181
+ 2DS_5334799 ------------------------------------------------------------
1182
+ 2AS_5222932 ------------------------------------------------------------
1183
+ 2BS_5163353 CGGAAAAATCGCAGCGTTATTATTATTTTTTTGGCTAGGTACATAATCCGGGCATGTGAA
1184
+
1185
+
1186
+ 2BS_5245544 TGATGCGTGATAACAAAAATAAGAGAACAGTTGCCATCTTCGTAACGATGAAGATGACAT
1187
+ 2DS_5334799 ------------------------------------------------------------
1188
+ 2AS_5222932 ------------------------------------------------------------
1189
+ 2BS_5163353 AACTGTCTCGATCGCACGCACATAATCCGGGGAATGAAGAGGTTGAGGTGAACCTGAAAT
1190
+
1191
+
1192
+ 2BS_5245544 TCTACTTATGTCATGCACTTTCATTTTTTCACAGGTTCTTATGACCAAAACACTCTCAGG
1193
+ 2DS_5334799 ------------------------------------------------------------
1194
+ 2AS_5222932 ------------------------------------------------------------
1195
+ 2BS_5163353 TTGTGTTGGAATCTAGGCATGGAGAGAAAGATGATTCGTCACGAGCAACGTCGGCATCGA
1196
+
1197
+
1198
+ 2BS_5245544 GGCCCCCATGGCAAGTTCAGTTACAAGGCGCTAACACTAACAAATGTACGGGCAGCCAAC
1199
+ 2DS_5334799 ------------------------------------------------------------
1200
+ 2AS_5222932 ------------------------------------------------------------
1201
+ 2BS_5163353 CTGCACCAAGCTGCCATGACTCCATGGAGTGAGGTCATGTGAAGACTTTTGGGGAGCAAA
1202
+
1203
+
1204
+ 2BS_5245544 TTCAACTAGCTAATGTGGCTAATCAAGGTAATGCATACGAAAAAAGAGCACATACTGGTG
1205
+ 2DS_5334799 ------------------------------------------------------------
1206
+ 2AS_5222932 ------------------------------------------------------------
1207
+ 2BS_5163353 ACTCCAACCGGGCATGTCATAGCCAGCCAAAAATTTCTCATCTATATCTTTCCATCCCCC
1208
+
1209
+
1210
+ 2BS_5245544 TGGACATGAAAAATGAACATGCAAAAAAATGGCAAAAGGACTCACGAGTTATCACGGGTG
1211
+ 2DS_5334799 ------------------------------------------------------------
1212
+ 2AS_5222932 ------------------------------------------------------------
1213
+ 2BS_5163353 CAAAAGAGGGGGAGTTGAAGTGCTTGTCTCCGAAAAAAGATGGCGTTTTGCACATCCACA
1214
+
1215
+
1216
+ 2BS_5245544 AAAAATGCAGAGCCTTCATGCAGCACGTGGCATCAGGCAGCACCCATGTACCTGCCATCG
1217
+ 2DS_5334799 ------------------------------------------------------------
1218
+ 2AS_5222932 ------------------------------------------------------------
1219
+ 2BS_5163353 CAATCAAGAAAACATAAAATGTGCCCCCGCGGAAAAAAGACACACATAAATGTGACTATT
1220
+
1221
+
1222
+ 2BS_5245544 ACGTCATACACAGGTGAGTCCATAAAAAGTGAAGTTGCGGATGCTCAATTAGCAGAAGGA
1223
+ 2DS_5334799 ------------------------------------------------------------
1224
+ 2AS_5222932 ------------------------------------------------------------
1225
+ 2BS_5163353 ATTTTCTCCCGCAATATATAATTACATTATAGTCCCTTCGTCCCAGAATAAGTGTCTTGA
1226
+
1227
+
1228
+ 2BS_5245544 ACATGGTTGACAATTACACTTGCCATGACTGGACATCTACAATTGCCATGGTTAAATAAC
1229
+ 2DS_5334799 ------------------------------------------------------------
1230
+ 2AS_5222932 ------------------------------------------------------------
1231
+ 2BS_5163353 GCTTAGTACAAATTTATACTAGAGCTAGTACAAAGTTGAGTCACTTATTTTGAGACGGAG
1232
+
1233
+
1234
+ 2BS_5245544 TGCAGTTGTCATCCCTGGACAAATGCTGTTGCCATCCATGGACAACTGCAGTTTCCATGG
1235
+ 2DS_5334799 ------------------------------------------------------------
1236
+ 2AS_5222932 ------------------------------------------------------------
1237
+ 2BS_5163353 GGAGTAGAACCTAGCAGAATGTATGAATGTACATTTTAGGCAAATCTATAGACAGAGATC
1238
+
1239
+
1240
+ 2BS_5245544 AGGAAGAACTGCAGTTGCCATGCTAGTGTAACTGCAGTTGCCATGCCATGACAACTTCAG
1241
+ 2DS_5334799 ------------------------------------------------------------
1242
+ 2AS_5222932 ------------------------------------------------------------
1243
+ 2BS_5163353 TTCACACTTGTAATGAAGACTTTTGAAAGGGAAAAATGGGTTCAAACTTGACCAAAACTA
1244
+
1245
+
1246
+ 2BS_5245544 TTGCCATGGAGGAACAACTGTAGTTGCCATACGAGTGCAACTACAGTTGCCAAGCCAGGA
1247
+ 2DS_5334799 ------------------------------------------------------------
1248
+ 2AS_5222932 ------------------------------------------------------------
1249
+ 2BS_5163353 CATCCGGAACTTCATGAATGTGTGAATTGGAGGCAGTGGCG-------------------
1250
+
1251
+
1252
+ 2BS_5245544 AAACTGCAGTTGCCACATCAGGGGCAACTAGAGTTTCCGTGCTAGCACAAACTGCATTTT
1253
+ 2DS_5334799 ------------------------------------------------------------
1254
+ 2AS_5222932 ------------------------------------------------------------
1255
+ 2BS_5163353 ------------------------------------------------------------
1256
+
1257
+
1258
+ 2BS_5245544 CCATGAATTGACCAACCACTACTATGCTTACAGGTTATTACGGTGGTGGTAACCGGGCAA
1259
+ 2DS_5334799 ------------------------------------------------------------
1260
+ 2AS_5222932 ------------------------------------------------------------
1261
+ 2BS_5163353 ------------------------------------------------------------
1262
+
1263
+
1264
+ 2BS_5245544 ACGTCTCGTGGCAAGATTCACAAATTGCAGGTGGAGCACGTCATTTTGGTGTCACAGACC
1265
+ 2DS_5334799 ------------------------------------------------------------
1266
+ 2AS_5222932 ------------------------------------------------------------
1267
+ 2BS_5163353 ------------------------------------------------------------
1268
+
1269
+
1270
+ 2BS_5245544 ACACAAGATGGTCACATGCAGCACAACAAGGTAAAGAAAAAAACTGAACCACAAAACAGC
1271
+ 2DS_5334799 ------------------------------------------------------------
1272
+ 2AS_5222932 ------------------------------------------------------------
1273
+ 2BS_5163353 ------------------------------------------------------------
1274
+
1275
+
1276
+ 2BS_5245544 ACTACATTTGTTTTGGTGGCAAAAAAAGCACGTGCCGAAAAAAAGAATTGAAGCAGTGAT
1277
+ 2DS_5334799 ------------------------------------------------------------
1278
+ 2AS_5222932 ------------------------------------------------------------
1279
+ 2BS_5163353 ------------------------------------------------------------
1280
+
1281
+
1282
+ 2BS_5245544 GGTGGACAAGAACGAAGCATAAAACACTGAAAAAGTGGTTGCGTGCAAATGAGTCATGTA
1283
+ 2DS_5334799 ------------------------------------------------------------
1284
+ 2AS_5222932 ------------------------------------------------------------
1285
+ 2BS_5163353 ------------------------------------------------------------
1286
+
1287
+
1288
+ 2BS_5245544 TTGTCTTTGAAAAATTGCCAACTGCTAAAAGCATGTACGCATCACTAATGGTTGAACACA
1289
+ 2DS_5334799 ------------------------------------------------------------
1290
+ 2AS_5222932 ------------------------------------------------------------
1291
+ 2BS_5163353 ------------------------------------------------------------
1292
+
1293
+
1294
+ 2BS_5245544 TTTCGCCTAGTGAGATCAATCTTATAATGCAGTAGTTTTGTTGCGAGAACACAGTGGTTG
1295
+ 2DS_5334799 ------------------------------------------------------------
1296
+ 2AS_5222932 ------------------------------------------------------------
1297
+ 2BS_5163353 ------------------------------------------------------------
1298
+
1299
+
1300
+ 2BS_5245544 CCATTTGTTGGTTGCAGTGTTTGCCATGAATGCAGGACTGCAGCTGCCATGCATATAGAA
1301
+ 2DS_5334799 ------------------------------------------------------------
1302
+ 2AS_5222932 ------------------------------------------------------------
1303
+ 2BS_5163353 ------------------------------------------------------------
1304
+
1305
+
1306
+ 2BS_5245544 CCCAAGTTTTCCTACTAAAAAAAGGAGCGTGTTGTCGTGCATTGGCAGACATTGGTTGCC
1307
+ 2DS_5334799 ------------------------------------------------------------
1308
+ 2AS_5222932 ------------------------------------------------------------
1309
+ 2BS_5163353 ------------------------------------------------------------
1310
+
1311
+
1312
+ 2BS_5245544 ATGTTTGTTGAACTGTACCTGCCATGAATGGACAGCTACATTTGCCACACATGTCCACGC
1313
+ 2DS_5334799 ------------------------------------------------------------
1314
+ 2AS_5222932 ------------------------------------------------------------
1315
+ 2BS_5163353 ------------------------------------------------------------
1316
+
1317
+
1318
+ 2BS_5245544 GCGAACTGACATCTTGATGTTCGAATGATGTAATGCCAAATCACTCGATGTTAATGTCAT
1319
+ 2DS_5334799 ------------------------------------------------------------
1320
+ 2AS_5222932 ------------------------------------------------------------
1321
+ 2BS_5163353 ------------------------------------------------------------
1322
+
1323
+
1324
+ 2BS_5245544 CTGTTGCGATAAACATGTTATTCAAACAAAAAAATCTTACTCTCGTACCTGTTTTTTCCA
1325
+ 2DS_5334799 ------------------------------------------------------------
1326
+ 2AS_5222932 ------------------------------------------------------------
1327
+ 2BS_5163353 ------------------------------------------------------------
1328
+
1329
+
1330
+ 2BS_5245544 TTACAGGGCCTACAACTACACTGAACAGCGGCACGGGCACATCTACTGCGGGAAGCTCTG
1331
+ 2DS_5334799 ------------------------------------------------------------
1332
+ 2AS_5222932 ------------------------------------------------------------
1333
+ 2BS_5163353 ------------------------------------------------------------
1334
+
1335
+
1336
+ 2BS_5245544 AGCGCACAGAAGACGCGTTCCCCCAGCCAGCAAACAATCATGCCGCAAATAATGCCGAGT
1337
+ 2DS_5334799 ------------------------------------------------------------
1338
+ 2AS_5222932 ------------------------------------------------------------
1339
+ 2BS_5163353 ------------------------------------------------------------
1340
+
1341
+
1342
+ 2BS_5245544 CAGTGTCAGAAATGGCAATCATTCCAGCAATTCCCACAACCACCCCTTTGAACGCAAGCA
1343
+ 2DS_5334799 ------------------------------------------------------------
1344
+ 2AS_5222932 ------------------------------------------------------------
1345
+ 2BS_5163353 ------------------------------------------------------------
1346
+
1347
+
1348
+ 2BS_5245544 CTGGCAACATTCAAATCGATGAAACTGCTGCCGATACTGAAGTGAATGATGAAACTGACG
1349
+ 2DS_5334799 ------------------------------------------------------------
1350
+ 2AS_5222932 ------------------------------------------------------------
1351
+ 2BS_5163353 ------------------------------------------------------------
1352
+
1353
+
1354
+ 2BS_5245544 ACGAGGCACAAGGGGATGAAGATGATGGGCAACCAGATATCATGGTACCTCTGCCACCAT
1355
+ 2DS_5334799 ------------------------------------------------------------
1356
+ 2AS_5222932 ------------------------------------------------------------
1357
+ 2BS_5163353 ------------------------------------------------------------
1358
+
1359
+
1360
+ 2BS_5245544 ACGTTGGGCAAAGATTTGAATCGTTTGAAGAAGCAAAGGAATTCTACCAGACATATGCAA
1361
+ 2DS_5334799 ------------------------------------------------------------
1362
+ 2AS_5222932 ------------------------------------------------------------
1363
+ 2BS_5163353 ------------------------------------------------------------
1364
+
1365
+
1366
+ 2BS_5245544 AGTTTCATGGGTTTGCCGTCAACACCGAATACCATAGAAAAATTAAGAAAACTAATGAGT
1367
+ 2DS_5334799 ------------------------------------------------------------
1368
+ 2AS_5222932 ------------------------------------------------------------
1369
+ 2BS_5163353 ------------------------------------------------------------
1370
+
1371
+
1372
+ 2BS_5245544 ACAACAGAGGTGAGATGTGGTGCCACAAGGTACGAAGGAACAAGAAAGGGAAAGGTGTTG
1373
+ 2DS_5334799 ------------------------------------------------------------
1374
+ 2AS_5222932 ------------------------------------------------------------
1375
+ 2BS_5163353 ------------------------------------------------------------
1376
+
1377
+
1378
+ 2BS_5245544 CGCCTGTCGTTCCGAAACGAAAGAGAGGGATCATTCTCAAGACGGGTTGCCCTGTCCGGT
1379
+ 2DS_5334799 ------------------------------------------------------------
1380
+ 2AS_5222932 ------------------------------------------------------------
1381
+ 2BS_5163353 ------------------------------------------------------------
1382
+
1383
+
1384
+ 2BS_5245544 GTAAGCTAAACATAGATGGAACACAATATGTGGTCACTGAGTATTTTGACGAGCACAACC
1385
+ 2DS_5334799 ------------------------------------------------------------
1386
+ 2AS_5222932 ------------------------------------------------------------
1387
+ 2BS_5163353 ------------------------------------------------------------
1388
+
1389
+
1390
+ 2BS_5245544 ACAAACTCATAAAGAAGTTTGATCTGGTCAAATTTCTGACCGCCCACAGAGGGTTCACCC
1391
+ 2DS_5334799 ------------------------------------------------------------
1392
+ 2AS_5222932 ------------------------------------------------------------
1393
+ 2BS_5163353 ------------------------------------------------------------
1394
+
1395
+
1396
+ 2BS_5245544 CAGTCGAAAGGCAATTCGTAAAGCTGCTACATGATTGTAACATCGGTCCATCAAGAATGG
1397
+ 2DS_5334799 ------------------------------------------------------------
1398
+ 2AS_5222932 ------------------------------------------------------------
1399
+ 2BS_5163353 ------------------------------------------------------------
1400
+
1401
+
1402
+ 2BS_5245544 TCCAGATACTATCACTCATCCAGCAAAAAGGGGAAACTGAGTAGCATGCCGTACATACCA
1403
+ 2DS_5334799 ------------------------------------------------------------
1404
+ 2AS_5222932 ------------------------------------------------------------
1405
+ 2BS_5163353 ------------------------------------------------------------
1406
+
1407
+
1408
+ 2BS_5245544 GCTGACGTCACAAACCTACAGGCCAAGTACCATAGAGAGAGCAAG
1409
+ 2DS_5334799 ---------------------------------------------
1410
+ 2AS_5222932 ---------------------------------------------
1411
+ 2BS_5163353 ---------------------------------------------
1412
+