bio-polymarker 1.3.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (177) hide show
  1. checksums.yaml +7 -0
  2. data/.travis.yml +24 -0
  3. data/Gemfile +23 -0
  4. data/README.md +205 -0
  5. data/Rakefile +61 -0
  6. data/SECURITY.md +16 -0
  7. data/VERSION +1 -0
  8. data/bin/bfr.rb +128 -0
  9. data/bin/blast_triads.rb +166 -0
  10. data/bin/blast_triads_promoters.rb +192 -0
  11. data/bin/count_variations.rb +36 -0
  12. data/bin/filter_blat_by_target_coverage.rb +69 -0
  13. data/bin/filter_exonerate_by_identity.rb +38 -0
  14. data/bin/find_best_blat_hit.rb +33 -0
  15. data/bin/find_best_exonerate.rb +17 -0
  16. data/bin/get_longest_hsp_blastx_triads.rb +66 -0
  17. data/bin/hexaploid_primers.rb +168 -0
  18. data/bin/homokaryot_primers.rb +183 -0
  19. data/bin/mafft_triads.rb +120 -0
  20. data/bin/mafft_triads_promoters.rb +403 -0
  21. data/bin/map_markers_to_contigs.rb +66 -0
  22. data/bin/marker_to_vcf.rb +241 -0
  23. data/bin/markers_in_region.rb +42 -0
  24. data/bin/mask_triads.rb +169 -0
  25. data/bin/polymarker.rb +410 -0
  26. data/bin/polymarker_capillary.rb +443 -0
  27. data/bin/polymarker_deletions.rb +350 -0
  28. data/bin/snp_position_to_polymarker.rb +101 -0
  29. data/bin/snps_between_bams.rb +107 -0
  30. data/bin/tag_stats.rb +75 -0
  31. data/bin/vcfLineToTable.rb +56 -0
  32. data/bin/vcfToPolyMarker.rb +82 -0
  33. data/bio-polymarker.gemspec +227 -0
  34. data/conf/defaults.rb +1 -0
  35. data/conf/primer3_config/dangle.dh +128 -0
  36. data/conf/primer3_config/dangle.ds +128 -0
  37. data/conf/primer3_config/interpretations/dangle_i.dh +131 -0
  38. data/conf/primer3_config/interpretations/dangle_i.ds +131 -0
  39. data/conf/primer3_config/interpretations/loops_i.dh +34 -0
  40. data/conf/primer3_config/interpretations/loops_i.ds +31 -0
  41. data/conf/primer3_config/interpretations/stack_i.dh +257 -0
  42. data/conf/primer3_config/interpretations/stack_i.ds +256 -0
  43. data/conf/primer3_config/interpretations/stackmm_i_mm.dh +257 -0
  44. data/conf/primer3_config/interpretations/stackmm_i_mm.ds +256 -0
  45. data/conf/primer3_config/interpretations/tetraloop_i.dh +79 -0
  46. data/conf/primer3_config/interpretations/tetraloop_i.ds +81 -0
  47. data/conf/primer3_config/interpretations/triloop_i.dh +21 -0
  48. data/conf/primer3_config/interpretations/triloop_i.ds +18 -0
  49. data/conf/primer3_config/interpretations/tstack2_i.dh +256 -0
  50. data/conf/primer3_config/interpretations/tstack2_i.ds +256 -0
  51. data/conf/primer3_config/interpretations/tstack_i.dh +256 -0
  52. data/conf/primer3_config/interpretations/tstack_i.ds +256 -0
  53. data/conf/primer3_config/interpretations/tstack_tm_inf_i.dh +256 -0
  54. data/conf/primer3_config/interpretations/tstack_tm_inf_i.ds +256 -0
  55. data/conf/primer3_config/loops.dh +30 -0
  56. data/conf/primer3_config/loops.ds +30 -0
  57. data/conf/primer3_config/stack.dh +256 -0
  58. data/conf/primer3_config/stack.ds +256 -0
  59. data/conf/primer3_config/stackmm.dh +256 -0
  60. data/conf/primer3_config/stackmm.ds +256 -0
  61. data/conf/primer3_config/tetraloop.dh +77 -0
  62. data/conf/primer3_config/tetraloop.ds +77 -0
  63. data/conf/primer3_config/triloop.dh +16 -0
  64. data/conf/primer3_config/triloop.ds +16 -0
  65. data/conf/primer3_config/tstack.dh +256 -0
  66. data/conf/primer3_config/tstack2.dh +256 -0
  67. data/conf/primer3_config/tstack2.ds +256 -0
  68. data/conf/primer3_config/tstack_tm_inf.ds +256 -0
  69. data/lib/bio/BFRTools.rb +465 -0
  70. data/lib/bio/BIOExtensions.rb +153 -0
  71. data/lib/bio/PolyploidTools/ChromosomeArm.rb +63 -0
  72. data/lib/bio/PolyploidTools/ExonContainer.rb +245 -0
  73. data/lib/bio/PolyploidTools/Marker.rb +175 -0
  74. data/lib/bio/PolyploidTools/Mask.rb +116 -0
  75. data/lib/bio/PolyploidTools/NoSNPSequence.rb +292 -0
  76. data/lib/bio/PolyploidTools/PrimerRegion.rb +30 -0
  77. data/lib/bio/PolyploidTools/SNP.rb +804 -0
  78. data/lib/bio/PolyploidTools/SNPMutant.rb +86 -0
  79. data/lib/bio/PolyploidTools/SNPSequence.rb +55 -0
  80. data/lib/bio/db/blast.rb +114 -0
  81. data/lib/bio/db/exonerate.rb +333 -0
  82. data/lib/bio/db/primer3.rb +820 -0
  83. data/lib/bio-polymarker.rb +28 -0
  84. data/test/data/7B_amplicon_test.fa +12 -0
  85. data/test/data/7B_amplicon_test.fa.fai +1 -0
  86. data/test/data/7B_amplicon_test_reference.fa +110 -0
  87. data/test/data/7B_amplicon_test_reference.fa.fai +3 -0
  88. data/test/data/7B_marker_test.txt +1 -0
  89. data/test/data/BS00068396_51.fa +2 -0
  90. data/test/data/BS00068396_51_blast.tab +4 -0
  91. data/test/data/BS00068396_51_contigs.aln +1412 -0
  92. data/test/data/BS00068396_51_contigs.dnd +7 -0
  93. data/test/data/BS00068396_51_contigs.fa +8 -0
  94. data/test/data/BS00068396_51_contigs.fa.fai +4 -0
  95. data/test/data/BS00068396_51_contigs.fa.nhr +0 -0
  96. data/test/data/BS00068396_51_contigs.fa.nin +0 -0
  97. data/test/data/BS00068396_51_contigs.fa.nsq +0 -0
  98. data/test/data/BS00068396_51_contigs.nhr +0 -0
  99. data/test/data/BS00068396_51_contigs.nin +0 -0
  100. data/test/data/BS00068396_51_contigs.nsq +0 -0
  101. data/test/data/BS00068396_51_exonerate.tab +6 -0
  102. data/test/data/BS00068396_51_for_polymarker.txt +1 -0
  103. data/test/data/BS00068396_51_genes.txt +14 -0
  104. data/test/data/IWGSC_CSS_1AL_scaff_1455974.fa +112 -0
  105. data/test/data/IWGSC_CSS_1AL_scaff_1455974_aln_contigs.fa +2304 -0
  106. data/test/data/IWGSC_CSS_1AL_scaff_1455974_aln_contigs.fa.fai +11 -0
  107. data/test/data/LIB1716.bam +0 -0
  108. data/test/data/LIB1716.bam.bai +0 -0
  109. data/test/data/LIB1719.bam +0 -0
  110. data/test/data/LIB1719.bam.bai +0 -0
  111. data/test/data/LIB1721.bam +0 -0
  112. data/test/data/LIB1721.bam.bai +0 -0
  113. data/test/data/LIB1722.bam +0 -0
  114. data/test/data/LIB1722.bam.bai +0 -0
  115. data/test/data/PST130_7067.csv +1 -0
  116. data/test/data/PST130_7067.fa +2 -0
  117. data/test/data/PST130_7067.fa.fai +1 -0
  118. data/test/data/PST130_7067.fa.ndb +0 -0
  119. data/test/data/PST130_7067.fa.nhr +0 -0
  120. data/test/data/PST130_7067.fa.nin +0 -0
  121. data/test/data/PST130_7067.fa.not +0 -0
  122. data/test/data/PST130_7067.fa.nsq +0 -0
  123. data/test/data/PST130_7067.fa.ntf +0 -0
  124. data/test/data/PST130_7067.fa.nto +0 -0
  125. data/test/data/PST130_reverse_primer.csv +1 -0
  126. data/test/data/S22380157.fa +16 -0
  127. data/test/data/S22380157.fa.fai +1 -0
  128. data/test/data/S22380157.vcf +67 -0
  129. data/test/data/S58861868/LIB1716.bam +0 -0
  130. data/test/data/S58861868/LIB1716.sam +651 -0
  131. data/test/data/S58861868/LIB1719.bam +0 -0
  132. data/test/data/S58861868/LIB1719.sam +805 -0
  133. data/test/data/S58861868/LIB1721.bam +0 -0
  134. data/test/data/S58861868/LIB1721.sam +1790 -0
  135. data/test/data/S58861868/LIB1722.bam +0 -0
  136. data/test/data/S58861868/LIB1722.sam +1271 -0
  137. data/test/data/S58861868/S58861868.fa +16 -0
  138. data/test/data/S58861868/S58861868.fa.fai +1 -0
  139. data/test/data/S58861868/S58861868.vcf +76 -0
  140. data/test/data/S58861868/header.txt +9 -0
  141. data/test/data/S58861868/merged.bam +0 -0
  142. data/test/data/S58861868/merged_reheader.bam +0 -0
  143. data/test/data/S58861868/merged_reheader.bam.bai +0 -0
  144. data/test/data/Test3Aspecific.csv +2 -0
  145. data/test/data/Test3Aspecific_contigs.fa +6 -0
  146. data/test/data/bfr_out_test.csv +5 -0
  147. data/test/data/chr1A_C1145499T/chr1A_C1145499T.csv +1 -0
  148. data/test/data/chr1A_G540414846C/chr1A_G540414846C.csv +1 -0
  149. data/test/data/chr1A_G540414846C/chr1A_G540414846C.fa +2 -0
  150. data/test/data/chr1A_T517634750C/chr1A_T517634750C.csv +1 -0
  151. data/test/data/chr2D_C112180134A/chr2D_C112180134A.csv +1 -0
  152. data/test/data/chr4D_C14473543T/chr4D_C14473543T.csv +1 -0
  153. data/test/data/chr4D_C14473543T/chr4D_C14473543T.fa +2 -0
  154. data/test/data/headerMergeed.txt +9 -0
  155. data/test/data/headerS2238015 +1 -0
  156. data/test/data/mergedLibs.bam +0 -0
  157. data/test/data/mergedLibsReheader.bam +0 -0
  158. data/test/data/mergedLibsSorted.bam +0 -0
  159. data/test/data/mergedLibsSorted.bam.bai +0 -0
  160. data/test/data/patological_cases5D.csv +1 -0
  161. data/test/data/primer_3_input_header_test +5 -0
  162. data/test/data/short_primer_design_test.csv +10 -0
  163. data/test/data/some_tests/some_tests.csv +201 -0
  164. data/test/data/test_from_mutant.csv +3 -0
  165. data/test/data/test_iselect.csv +196 -0
  166. data/test/data/test_iselect_reference.fa +1868 -0
  167. data/test/data/test_iselect_reference.fa.fai +934 -0
  168. data/test/data/test_primer3_error.csv +4 -0
  169. data/test/data/test_primer3_error_contigs.fa +10 -0
  170. data/test/test_bfr.rb +135 -0
  171. data/test/test_blast.rb +47 -0
  172. data/test/test_exon_container.rb +17 -0
  173. data/test/test_exonearate.rb +48 -0
  174. data/test/test_integration.rb +76 -0
  175. data/test/test_snp_parsing.rb +121 -0
  176. data/test/test_wrong_selection.sh +5 -0
  177. metadata +356 -0
@@ -0,0 +1,256 @@
1
+ 0
2
+ 0
3
+ 0
4
+ -2500
5
+ 0
6
+ 0
7
+ 0
8
+ -2700
9
+ 0
10
+ 0
11
+ 0
12
+ -2400
13
+ -3100
14
+ -1600
15
+ -1900
16
+ 0
17
+ 0
18
+ 0
19
+ -8000
20
+ 0
21
+ 0
22
+ 0
23
+ -3200
24
+ 0
25
+ 0
26
+ 0
27
+ -4600
28
+ 0
29
+ -1800
30
+ -100
31
+ 0
32
+ -900
33
+ 0
34
+ -4300
35
+ 0
36
+ 0
37
+ 0
38
+ -2700
39
+ 0
40
+ 0
41
+ 0
42
+ -6000
43
+ 0
44
+ 0
45
+ -2500
46
+ 0
47
+ -1100
48
+ -3200
49
+ -3100
50
+ 0
51
+ 0
52
+ 0
53
+ -1800
54
+ 0
55
+ 0
56
+ 0
57
+ -2500
58
+ 0
59
+ 0
60
+ 0
61
+ 0
62
+ -2300
63
+ -3500
64
+ -2400
65
+ 0
66
+ 0
67
+ 0
68
+ -2300
69
+ 0
70
+ 0
71
+ 0
72
+ -700
73
+ -4300
74
+ -2600
75
+ -3900
76
+ 0
77
+ 0
78
+ 0
79
+ 0
80
+ -700
81
+ 0
82
+ 0
83
+ -5000
84
+ 0
85
+ 0
86
+ 0
87
+ -3900
88
+ 0
89
+ -2700
90
+ -2100
91
+ 0
92
+ -3200
93
+ 0
94
+ 0
95
+ -3000
96
+ 0
97
+ 0
98
+ -2600
99
+ 0
100
+ 0
101
+ 0
102
+ -2100
103
+ 0
104
+ 0
105
+ -6000
106
+ 0
107
+ -3800
108
+ -3800
109
+ 0
110
+ -3900
111
+ 0
112
+ 0
113
+ -1600
114
+ 0
115
+ 0
116
+ 0
117
+ -100
118
+ 0
119
+ 0
120
+ 0
121
+ 0
122
+ -3900
123
+ -6600
124
+ -6100
125
+ -2300
126
+ 0
127
+ 0
128
+ 0
129
+ 0
130
+ 0
131
+ 0
132
+ -2000
133
+ -8000
134
+ -5000
135
+ -4300
136
+ 0
137
+ 0
138
+ 0
139
+ 0
140
+ -1100
141
+ 0
142
+ 0
143
+ 0
144
+ -3600
145
+ 0
146
+ 0
147
+ -4300
148
+ 0
149
+ -3200
150
+ -3900
151
+ 0
152
+ -4900
153
+ 0
154
+ 0
155
+ -700
156
+ 0
157
+ 0
158
+ 0
159
+ -5900
160
+ 0
161
+ 0
162
+ -3900
163
+ 0
164
+ 0
165
+ -4600
166
+ 0
167
+ -700
168
+ -5700
169
+ 0
170
+ -3800
171
+ 0
172
+ 0
173
+ 0
174
+ -6600
175
+ 0
176
+ 0
177
+ -1900
178
+ 0
179
+ 0
180
+ 0
181
+ 0
182
+ -3000
183
+ -5900
184
+ -7400
185
+ -1100
186
+ 0
187
+ 0
188
+ 0
189
+ -3500
190
+ 0
191
+ 0
192
+ 0
193
+ -2500
194
+ -2300
195
+ -2000
196
+ -7200
197
+ 0
198
+ 0
199
+ 0
200
+ -2500
201
+ 0
202
+ 0
203
+ 0
204
+ -3900
205
+ 0
206
+ 0
207
+ 0
208
+ -3200
209
+ -2700
210
+ -700
211
+ 0
212
+ -2500
213
+ 0
214
+ 0
215
+ -4900
216
+ 0
217
+ 0
218
+ 0
219
+ -5700
220
+ 0
221
+ 0
222
+ 0
223
+ -7400
224
+ 0
225
+ -2400
226
+ 0
227
+ -1100
228
+ -3900
229
+ 0
230
+ -3200
231
+ 0
232
+ 0
233
+ 0
234
+ -3800
235
+ 0
236
+ 0
237
+ 0
238
+ -6100
239
+ 0
240
+ 0
241
+ 0
242
+ -700
243
+ -3600
244
+ -3200
245
+ -900
246
+ 0
247
+ 0
248
+ 0
249
+ -3200
250
+ 0
251
+ 0
252
+ 0
253
+ -2400
254
+ 0
255
+ 0
256
+ 0
@@ -0,0 +1,256 @@
1
+ 0
2
+ 0
3
+ 0
4
+ -2500
5
+ 0
6
+ 0
7
+ 0
8
+ -2700
9
+ 0
10
+ 0
11
+ 0
12
+ -2400
13
+ -3100
14
+ -1600
15
+ -1900
16
+ -5000
17
+ 0
18
+ 0
19
+ -8000
20
+ 0
21
+ 0
22
+ 0
23
+ -3200
24
+ 0
25
+ 0
26
+ 0
27
+ -4600
28
+ 0
29
+ -1800
30
+ -100
31
+ -6000
32
+ -900
33
+ 0
34
+ -4300
35
+ 0
36
+ 0
37
+ 0
38
+ -2700
39
+ 0
40
+ 0
41
+ 0
42
+ -6000
43
+ 0
44
+ 0
45
+ -2500
46
+ -6000
47
+ -1100
48
+ -3200
49
+ -3100
50
+ 0
51
+ 0
52
+ 0
53
+ -1800
54
+ 0
55
+ 0
56
+ 0
57
+ -2500
58
+ 0
59
+ 0
60
+ 0
61
+ -5000
62
+ -2300
63
+ -3500
64
+ -2400
65
+ 0
66
+ 0
67
+ 0
68
+ -2300
69
+ 0
70
+ 0
71
+ 0
72
+ -700
73
+ -4300
74
+ -2600
75
+ -3900
76
+ -6000
77
+ 0
78
+ 0
79
+ 0
80
+ -700
81
+ 0
82
+ 0
83
+ -5000
84
+ 0
85
+ 0
86
+ 0
87
+ -3900
88
+ 0
89
+ -2700
90
+ -2100
91
+ -7000
92
+ -3200
93
+ 0
94
+ 0
95
+ -3000
96
+ 0
97
+ 0
98
+ -2600
99
+ 0
100
+ 0
101
+ 0
102
+ -2100
103
+ 0
104
+ 0
105
+ -6000
106
+ -7000
107
+ -3800
108
+ -3800
109
+ 0
110
+ -3900
111
+ 0
112
+ 0
113
+ -1600
114
+ 0
115
+ 0
116
+ 0
117
+ -100
118
+ 0
119
+ 0
120
+ 0
121
+ -6000
122
+ -3900
123
+ -6600
124
+ -6100
125
+ -2300
126
+ 0
127
+ 0
128
+ 0
129
+ 0
130
+ 0
131
+ 0
132
+ -2000
133
+ -8000
134
+ -5000
135
+ -4300
136
+ -6000
137
+ 0
138
+ 0
139
+ 0
140
+ -1100
141
+ 0
142
+ 0
143
+ 0
144
+ -3600
145
+ 0
146
+ 0
147
+ -4300
148
+ 0
149
+ -3200
150
+ -3900
151
+ -7000
152
+ -4900
153
+ 0
154
+ 0
155
+ -700
156
+ 0
157
+ 0
158
+ 0
159
+ -5900
160
+ 0
161
+ 0
162
+ -3900
163
+ 0
164
+ 0
165
+ -4600
166
+ -7000
167
+ -700
168
+ -5700
169
+ 0
170
+ -3800
171
+ 0
172
+ 0
173
+ 0
174
+ -6600
175
+ 0
176
+ 0
177
+ -1900
178
+ 0
179
+ 0
180
+ 0
181
+ -6000
182
+ -3000
183
+ -5900
184
+ -7400
185
+ -1100
186
+ 0
187
+ 0
188
+ 0
189
+ -3500
190
+ 0
191
+ 0
192
+ 0
193
+ -2500
194
+ -2300
195
+ -2000
196
+ -5000
197
+ 0
198
+ 0
199
+ 0
200
+ -2500
201
+ 0
202
+ 0
203
+ 0
204
+ -3900
205
+ 0
206
+ 0
207
+ 0
208
+ -3200
209
+ -2700
210
+ -700
211
+ -6000
212
+ -2500
213
+ 0
214
+ 0
215
+ -4900
216
+ 0
217
+ 0
218
+ 0
219
+ -5700
220
+ 0
221
+ 0
222
+ 0
223
+ -7400
224
+ 0
225
+ -2400
226
+ -6000
227
+ -1100
228
+ -3900
229
+ 0
230
+ -3200
231
+ 0
232
+ 0
233
+ 0
234
+ -3800
235
+ 0
236
+ 0
237
+ 0
238
+ -6100
239
+ 0
240
+ 0
241
+ -5000
242
+ -700
243
+ -3600
244
+ -3200
245
+ -900
246
+ 0
247
+ 0
248
+ 0
249
+ -3200
250
+ 0
251
+ 0
252
+ 0
253
+ -2400
254
+ 0
255
+ 0
256
+ 0
@@ -0,0 +1,256 @@
1
+ inf
2
+ inf
3
+ inf
4
+ -6.3
5
+ inf
6
+ inf
7
+ inf
8
+ -7.0
9
+ inf
10
+ inf
11
+ inf
12
+ -5.8
13
+ -7.8
14
+ -4.0
15
+ -4.4
16
+ -13.2
17
+ inf
18
+ inf
19
+ -22.5
20
+ inf
21
+ inf
22
+ inf
23
+ -7.1
24
+ inf
25
+ inf
26
+ inf
27
+ -11.4
28
+ inf
29
+ -3.8
30
+ -0.5
31
+ -16.1
32
+ -1.7
33
+ inf
34
+ -10.7
35
+ inf
36
+ inf
37
+ inf
38
+ -6.0
39
+ inf
40
+ inf
41
+ inf
42
+ -15.5
43
+ inf
44
+ inf
45
+ -5.9
46
+ -16.1
47
+ -2.1
48
+ -8.7
49
+ -7.8
50
+ inf
51
+ inf
52
+ inf
53
+ -3.8
54
+ inf
55
+ inf
56
+ inf
57
+ -5.9
58
+ inf
59
+ inf
60
+ inf
61
+ -13.6
62
+ -6.3
63
+ -9.4
64
+ -6.5
65
+ inf
66
+ inf
67
+ inf
68
+ -5.9
69
+ inf
70
+ inf
71
+ inf
72
+ -1.3
73
+ -10.7
74
+ -5.9
75
+ -9.6
76
+ -16.1
77
+ inf
78
+ inf
79
+ inf
80
+ -1.2
81
+ inf
82
+ inf
83
+ -13.8
84
+ inf
85
+ inf
86
+ inf
87
+ -10.6
88
+ inf
89
+ -6.0
90
+ -5.1
91
+ -19.3
92
+ -8.0
93
+ inf
94
+ inf
95
+ -7.8
96
+ inf
97
+ inf
98
+ -5.9
99
+ inf
100
+ inf
101
+ inf
102
+ -5.1
103
+ inf
104
+ inf
105
+ -15.5
106
+ -19.3
107
+ -9.5
108
+ -9.0
109
+ inf
110
+ -10.6
111
+ inf
112
+ inf
113
+ -4.0
114
+ inf
115
+ inf
116
+ inf
117
+ -0.5
118
+ inf
119
+ inf
120
+ inf
121
+ -16.1
122
+ -10.6
123
+ -18.7
124
+ -16.9
125
+ -6.3
126
+ inf
127
+ inf
128
+ inf
129
+ inf
130
+ inf
131
+ inf
132
+ -4.7
133
+ -22.5
134
+ -13.8
135
+ -11.1
136
+ -16.1
137
+ inf
138
+ inf
139
+ inf
140
+ -2.7
141
+ inf
142
+ inf
143
+ inf
144
+ -9.8
145
+ inf
146
+ inf
147
+ -11.1
148
+ inf
149
+ -7.1
150
+ -10.6
151
+ -19.3
152
+ -13.5
153
+ inf
154
+ inf
155
+ -19.2
156
+ inf
157
+ inf
158
+ inf
159
+ -16.1
160
+ inf
161
+ inf
162
+ -9.6
163
+ inf
164
+ inf
165
+ -11.4
166
+ -19.3
167
+ -19.2
168
+ -15.9
169
+ inf
170
+ -9.5
171
+ inf
172
+ inf
173
+ inf
174
+ -18.7
175
+ inf
176
+ inf
177
+ -4.4
178
+ inf
179
+ inf
180
+ inf
181
+ -16.1
182
+ -7.8
183
+ -16.1
184
+ -21.2
185
+ -2.1
186
+ inf
187
+ inf
188
+ inf
189
+ -9.4
190
+ inf
191
+ inf
192
+ inf
193
+ -6.3
194
+ -5.9
195
+ -4.7
196
+ -14.2
197
+ inf
198
+ inf
199
+ inf
200
+ -6.3
201
+ inf
202
+ inf
203
+ inf
204
+ -10.5
205
+ inf
206
+ inf
207
+ inf
208
+ -8.9
209
+ -7.0
210
+ -1.3
211
+ -16.1
212
+ -6.3
213
+ inf
214
+ inf
215
+ -13.5
216
+ inf
217
+ inf
218
+ inf
219
+ -15.9
220
+ inf
221
+ inf
222
+ inf
223
+ -21.2
224
+ inf
225
+ -5.8
226
+ -16.1
227
+ -2.7
228
+ -10.5
229
+ inf
230
+ -8.0
231
+ inf
232
+ inf
233
+ inf
234
+ -9.0
235
+ inf
236
+ inf
237
+ inf
238
+ -16.9
239
+ inf
240
+ inf
241
+ -13.5
242
+ -1.2
243
+ -9.8
244
+ -8.9
245
+ -1.7
246
+ inf
247
+ inf
248
+ inf
249
+ -8.7
250
+ inf
251
+ inf
252
+ inf
253
+ -6.5
254
+ inf
255
+ inf
256
+ inf