bio-polymarker 1.3.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (177) hide show
  1. checksums.yaml +7 -0
  2. data/.travis.yml +24 -0
  3. data/Gemfile +23 -0
  4. data/README.md +205 -0
  5. data/Rakefile +61 -0
  6. data/SECURITY.md +16 -0
  7. data/VERSION +1 -0
  8. data/bin/bfr.rb +128 -0
  9. data/bin/blast_triads.rb +166 -0
  10. data/bin/blast_triads_promoters.rb +192 -0
  11. data/bin/count_variations.rb +36 -0
  12. data/bin/filter_blat_by_target_coverage.rb +69 -0
  13. data/bin/filter_exonerate_by_identity.rb +38 -0
  14. data/bin/find_best_blat_hit.rb +33 -0
  15. data/bin/find_best_exonerate.rb +17 -0
  16. data/bin/get_longest_hsp_blastx_triads.rb +66 -0
  17. data/bin/hexaploid_primers.rb +168 -0
  18. data/bin/homokaryot_primers.rb +183 -0
  19. data/bin/mafft_triads.rb +120 -0
  20. data/bin/mafft_triads_promoters.rb +403 -0
  21. data/bin/map_markers_to_contigs.rb +66 -0
  22. data/bin/marker_to_vcf.rb +241 -0
  23. data/bin/markers_in_region.rb +42 -0
  24. data/bin/mask_triads.rb +169 -0
  25. data/bin/polymarker.rb +410 -0
  26. data/bin/polymarker_capillary.rb +443 -0
  27. data/bin/polymarker_deletions.rb +350 -0
  28. data/bin/snp_position_to_polymarker.rb +101 -0
  29. data/bin/snps_between_bams.rb +107 -0
  30. data/bin/tag_stats.rb +75 -0
  31. data/bin/vcfLineToTable.rb +56 -0
  32. data/bin/vcfToPolyMarker.rb +82 -0
  33. data/bio-polymarker.gemspec +227 -0
  34. data/conf/defaults.rb +1 -0
  35. data/conf/primer3_config/dangle.dh +128 -0
  36. data/conf/primer3_config/dangle.ds +128 -0
  37. data/conf/primer3_config/interpretations/dangle_i.dh +131 -0
  38. data/conf/primer3_config/interpretations/dangle_i.ds +131 -0
  39. data/conf/primer3_config/interpretations/loops_i.dh +34 -0
  40. data/conf/primer3_config/interpretations/loops_i.ds +31 -0
  41. data/conf/primer3_config/interpretations/stack_i.dh +257 -0
  42. data/conf/primer3_config/interpretations/stack_i.ds +256 -0
  43. data/conf/primer3_config/interpretations/stackmm_i_mm.dh +257 -0
  44. data/conf/primer3_config/interpretations/stackmm_i_mm.ds +256 -0
  45. data/conf/primer3_config/interpretations/tetraloop_i.dh +79 -0
  46. data/conf/primer3_config/interpretations/tetraloop_i.ds +81 -0
  47. data/conf/primer3_config/interpretations/triloop_i.dh +21 -0
  48. data/conf/primer3_config/interpretations/triloop_i.ds +18 -0
  49. data/conf/primer3_config/interpretations/tstack2_i.dh +256 -0
  50. data/conf/primer3_config/interpretations/tstack2_i.ds +256 -0
  51. data/conf/primer3_config/interpretations/tstack_i.dh +256 -0
  52. data/conf/primer3_config/interpretations/tstack_i.ds +256 -0
  53. data/conf/primer3_config/interpretations/tstack_tm_inf_i.dh +256 -0
  54. data/conf/primer3_config/interpretations/tstack_tm_inf_i.ds +256 -0
  55. data/conf/primer3_config/loops.dh +30 -0
  56. data/conf/primer3_config/loops.ds +30 -0
  57. data/conf/primer3_config/stack.dh +256 -0
  58. data/conf/primer3_config/stack.ds +256 -0
  59. data/conf/primer3_config/stackmm.dh +256 -0
  60. data/conf/primer3_config/stackmm.ds +256 -0
  61. data/conf/primer3_config/tetraloop.dh +77 -0
  62. data/conf/primer3_config/tetraloop.ds +77 -0
  63. data/conf/primer3_config/triloop.dh +16 -0
  64. data/conf/primer3_config/triloop.ds +16 -0
  65. data/conf/primer3_config/tstack.dh +256 -0
  66. data/conf/primer3_config/tstack2.dh +256 -0
  67. data/conf/primer3_config/tstack2.ds +256 -0
  68. data/conf/primer3_config/tstack_tm_inf.ds +256 -0
  69. data/lib/bio/BFRTools.rb +465 -0
  70. data/lib/bio/BIOExtensions.rb +153 -0
  71. data/lib/bio/PolyploidTools/ChromosomeArm.rb +63 -0
  72. data/lib/bio/PolyploidTools/ExonContainer.rb +245 -0
  73. data/lib/bio/PolyploidTools/Marker.rb +175 -0
  74. data/lib/bio/PolyploidTools/Mask.rb +116 -0
  75. data/lib/bio/PolyploidTools/NoSNPSequence.rb +292 -0
  76. data/lib/bio/PolyploidTools/PrimerRegion.rb +30 -0
  77. data/lib/bio/PolyploidTools/SNP.rb +804 -0
  78. data/lib/bio/PolyploidTools/SNPMutant.rb +86 -0
  79. data/lib/bio/PolyploidTools/SNPSequence.rb +55 -0
  80. data/lib/bio/db/blast.rb +114 -0
  81. data/lib/bio/db/exonerate.rb +333 -0
  82. data/lib/bio/db/primer3.rb +820 -0
  83. data/lib/bio-polymarker.rb +28 -0
  84. data/test/data/7B_amplicon_test.fa +12 -0
  85. data/test/data/7B_amplicon_test.fa.fai +1 -0
  86. data/test/data/7B_amplicon_test_reference.fa +110 -0
  87. data/test/data/7B_amplicon_test_reference.fa.fai +3 -0
  88. data/test/data/7B_marker_test.txt +1 -0
  89. data/test/data/BS00068396_51.fa +2 -0
  90. data/test/data/BS00068396_51_blast.tab +4 -0
  91. data/test/data/BS00068396_51_contigs.aln +1412 -0
  92. data/test/data/BS00068396_51_contigs.dnd +7 -0
  93. data/test/data/BS00068396_51_contigs.fa +8 -0
  94. data/test/data/BS00068396_51_contigs.fa.fai +4 -0
  95. data/test/data/BS00068396_51_contigs.fa.nhr +0 -0
  96. data/test/data/BS00068396_51_contigs.fa.nin +0 -0
  97. data/test/data/BS00068396_51_contigs.fa.nsq +0 -0
  98. data/test/data/BS00068396_51_contigs.nhr +0 -0
  99. data/test/data/BS00068396_51_contigs.nin +0 -0
  100. data/test/data/BS00068396_51_contigs.nsq +0 -0
  101. data/test/data/BS00068396_51_exonerate.tab +6 -0
  102. data/test/data/BS00068396_51_for_polymarker.txt +1 -0
  103. data/test/data/BS00068396_51_genes.txt +14 -0
  104. data/test/data/IWGSC_CSS_1AL_scaff_1455974.fa +112 -0
  105. data/test/data/IWGSC_CSS_1AL_scaff_1455974_aln_contigs.fa +2304 -0
  106. data/test/data/IWGSC_CSS_1AL_scaff_1455974_aln_contigs.fa.fai +11 -0
  107. data/test/data/LIB1716.bam +0 -0
  108. data/test/data/LIB1716.bam.bai +0 -0
  109. data/test/data/LIB1719.bam +0 -0
  110. data/test/data/LIB1719.bam.bai +0 -0
  111. data/test/data/LIB1721.bam +0 -0
  112. data/test/data/LIB1721.bam.bai +0 -0
  113. data/test/data/LIB1722.bam +0 -0
  114. data/test/data/LIB1722.bam.bai +0 -0
  115. data/test/data/PST130_7067.csv +1 -0
  116. data/test/data/PST130_7067.fa +2 -0
  117. data/test/data/PST130_7067.fa.fai +1 -0
  118. data/test/data/PST130_7067.fa.ndb +0 -0
  119. data/test/data/PST130_7067.fa.nhr +0 -0
  120. data/test/data/PST130_7067.fa.nin +0 -0
  121. data/test/data/PST130_7067.fa.not +0 -0
  122. data/test/data/PST130_7067.fa.nsq +0 -0
  123. data/test/data/PST130_7067.fa.ntf +0 -0
  124. data/test/data/PST130_7067.fa.nto +0 -0
  125. data/test/data/PST130_reverse_primer.csv +1 -0
  126. data/test/data/S22380157.fa +16 -0
  127. data/test/data/S22380157.fa.fai +1 -0
  128. data/test/data/S22380157.vcf +67 -0
  129. data/test/data/S58861868/LIB1716.bam +0 -0
  130. data/test/data/S58861868/LIB1716.sam +651 -0
  131. data/test/data/S58861868/LIB1719.bam +0 -0
  132. data/test/data/S58861868/LIB1719.sam +805 -0
  133. data/test/data/S58861868/LIB1721.bam +0 -0
  134. data/test/data/S58861868/LIB1721.sam +1790 -0
  135. data/test/data/S58861868/LIB1722.bam +0 -0
  136. data/test/data/S58861868/LIB1722.sam +1271 -0
  137. data/test/data/S58861868/S58861868.fa +16 -0
  138. data/test/data/S58861868/S58861868.fa.fai +1 -0
  139. data/test/data/S58861868/S58861868.vcf +76 -0
  140. data/test/data/S58861868/header.txt +9 -0
  141. data/test/data/S58861868/merged.bam +0 -0
  142. data/test/data/S58861868/merged_reheader.bam +0 -0
  143. data/test/data/S58861868/merged_reheader.bam.bai +0 -0
  144. data/test/data/Test3Aspecific.csv +2 -0
  145. data/test/data/Test3Aspecific_contigs.fa +6 -0
  146. data/test/data/bfr_out_test.csv +5 -0
  147. data/test/data/chr1A_C1145499T/chr1A_C1145499T.csv +1 -0
  148. data/test/data/chr1A_G540414846C/chr1A_G540414846C.csv +1 -0
  149. data/test/data/chr1A_G540414846C/chr1A_G540414846C.fa +2 -0
  150. data/test/data/chr1A_T517634750C/chr1A_T517634750C.csv +1 -0
  151. data/test/data/chr2D_C112180134A/chr2D_C112180134A.csv +1 -0
  152. data/test/data/chr4D_C14473543T/chr4D_C14473543T.csv +1 -0
  153. data/test/data/chr4D_C14473543T/chr4D_C14473543T.fa +2 -0
  154. data/test/data/headerMergeed.txt +9 -0
  155. data/test/data/headerS2238015 +1 -0
  156. data/test/data/mergedLibs.bam +0 -0
  157. data/test/data/mergedLibsReheader.bam +0 -0
  158. data/test/data/mergedLibsSorted.bam +0 -0
  159. data/test/data/mergedLibsSorted.bam.bai +0 -0
  160. data/test/data/patological_cases5D.csv +1 -0
  161. data/test/data/primer_3_input_header_test +5 -0
  162. data/test/data/short_primer_design_test.csv +10 -0
  163. data/test/data/some_tests/some_tests.csv +201 -0
  164. data/test/data/test_from_mutant.csv +3 -0
  165. data/test/data/test_iselect.csv +196 -0
  166. data/test/data/test_iselect_reference.fa +1868 -0
  167. data/test/data/test_iselect_reference.fa.fai +934 -0
  168. data/test/data/test_primer3_error.csv +4 -0
  169. data/test/data/test_primer3_error_contigs.fa +10 -0
  170. data/test/test_bfr.rb +135 -0
  171. data/test/test_blast.rb +47 -0
  172. data/test/test_exon_container.rb +17 -0
  173. data/test/test_exonearate.rb +48 -0
  174. data/test/test_integration.rb +76 -0
  175. data/test/test_snp_parsing.rb +121 -0
  176. data/test/test_wrong_selection.sh +5 -0
  177. metadata +356 -0
data/test/data/BS00068396_51_contigs.dnd ADDED
@@ -0,0 +1,7 @@
1
+ (
2
+ (
3
+ 2AS_5222932:0.20551,
4
+ 2BS_5163353:0.19641)
5
+ :0.57378,
6
+ 2BS_5245544:0.21414,
7
+ 2DS_5334799:0.22137);
data/test/data/BS00068396_51_contigs.fa ADDED
@@ -0,0 +1,8 @@
1
+ >2AS_5222932 6364 267569 1716390+,...,724070+
2
+ CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACTAAAAGATATCGGGGAGGCGGATACACAGCTTACATCACACCCCGTGCTACAAGCAACTAAAGATTGGAAAAAGAGAAGCCCGGTCGCATAGTGAGAAGTCTTCCATCTCGAAACATGTGCGAAGAAGAAGATCGCCAAGGGAAATGCCAACTGACTTGGCAACAAACTCCCCGTACGCCGACCCTGAGACACAAGAAGACGCCACACCCCCTACACCCTCACTGAAGGAGGACTTTACCCCTCGTCCTAGCTCAAAGGACGCCGCACCATTGAGCGAGGGATGTGTTCAACCTAGAACAGGAATGGTGTGGTCTTGAGGTCACAGGAGCCGAGCACATACACGCGACCCGCCACACCGCAGCGGGCAAACCATGGTGGCCATGAAGAAACGTCCGCACAATGCCTGGAACAAGAAGGGGGAACCTGTAGGAGAGGTTCACGGAAATCGAAGAAGCGGCAAGCTCAAGGCGGACAACAAGCACACAATATAAGCACAAGGAAGAAGGACCGGGTAACTACATGCCGCCACGAACAAACGTCGGGAAGGGGAACCCTTTCCCCTCCCACCCAGGTTCAAGGGTGATGAACCACCGACGAATAGGGCAGCGAATACCTCACTGAAGATAGTATACTCAACGCTTCACACAAACTGTCGCTCGAAACCCACAACAACCACAAAATTAACCACATGGCACCACACACCAGCCTCTCCTTGCCAAACGACTCCCCCAGGGAGGTAACAACACCGAGCGTCGCCGCCGCCGCATCCACAGGGATAACAGGAATTAACCTTGGGTCAAAGAAGAGGGGTAAGGAGAAGGGATCACGTCGGTGCCTCCAAGGAGGGGAGCAGCGCCAGCAGGCGGTGTCACCGACGTGGTCGGCCAAGCCACCAAAGGATTTCTCTCGAACCCAACTCACACCACCATGCCCGGCGATACAAGATCACCACCACGAGATCCGGCCGGAAGTGGACCAAATGGGAAAAAGGAGTGACCTTCAGATATGACGCCAGAAGAACCGCCGGAGCAGACCGCCGACCATGAACCGCACCTGTCGTCGCCGCACTGCCCACACGGCTGAGGACGCCGACCCTCTCGTGTGAGCATCGCCAGCCGCGAAGACGGCGTCGCCTCTCCAAGAAGGTTCGCCGCCTGGAGCCCAAAGCCCTCCGCCGAGACCGGAGCGACGAAATCCCCGTTGCCACCTTCACCGTAGGCTGCGCGGGGTTGCCCGGCAACCAGTGGCGGACCTAGAATCATAGGCTTGGGGGTGCCATAGTTCAATGTTCACATTAAACGTCATCATAATCTCAATAAATAGTCTTAAAATAGCAACAACTTGATGAATATGTAGCGTGAGGTATAGAGTAAAATTTATTTTACAACTTTGAAGGGGTGCCTGGCACCCACGGCCTCAAATTAGTTATGGCGGTGGCCAAGGTTTGATATCATCTTGGAATCGTCCACGGGAGCGATTCGGTGACCAAGGTCTTTTCTGTAAACTAAACTTATTCCCTATGCTGGCCTTATCAATTCCGAGTTAATCAAACCCATCAAAATCGAATTGAAGGAGCAAATTGATAAAATACGATTTTCTGCTTTGACACATCATCATTGTTCTCCTTTGATGGAACATCTTGACCATCAAACATCCACATTTAACCCCTTAAAAGAACACATTCTACATTTAAGCTAGCGCTTTCTTCTGTCTTGCCCCCTTGCCAAAAACACAAGATATTCCACGCTGCCAAACACACCAATCGGAAAAAGGCAATTTTCACTTTTCATCGATTAGAAGCAGCTCCGAAAAGGAAAAGAAGCAACCATCTCTCCCCACCCCACCCCGGCCCTGCTCCCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGGCGGGGGTGAGTGGCGAGCCTCCCTCGCCGCCTTGCGCTGCACAGGAACAAGGCGAGAGCGATCGGCGTCGGGATGCTGAGGCGGCGGCTGAGCTCCCTTCTCCTCCGATCCCCGTGCTCCTCCTCCGCCGTCGCTTCCTCCTACCAGCAGCAGCAGCACCTCCTCCTCCCCACCCACGCCGAGGTAACCCCCACGGTTCCCCTTTCTTTCCCTCCCGCGCATTTCGTCGAACGCCTCGCGCGCGCGCACAACGTGGCCGGACCGGATCTGGCCTGCACTCCTTTCTCGCTCCGTTTGGTTCAATGCGTGCCTGCCGTTCCTAGATGCTCATCCGCCTGACTGTTTTCCTCGCAGAAACCGCCGGCCCTGAATCTGCTCAGGCTCTTCACATCCCTAGCTGTACGTTTGTTCCCAAACCCGCATTCTTATTATTTGTGACAACTATGCAGACTGCATGTGAATAATTGGTGGTGTGTCCTCTGTTCATTCTGTAGGGAACCGATGGGGACAGGCCGTTCATCGCTTTTGTCTTGGGTAGTTTTTCCCTGCTTTTACTCCCAAAATGTAGCAGGATTGTTGTTTTCGTTCTTCGAAACGGAGGGCAAAGCTTTGCAGGGTCGGTTTTACATTTATAAAGTTCCATGCATATCTGTGTAGAGTAAACCGAGGAACCCTTGCCTCAATGATAATCAGTGCTGTTTCACATTTATAATCGCTTTCGTCTTAGGTAAAAAAATAAATCTACTAGTACTCCCCCAATATTGCAGGGTTGGTTTCACATTTACATACTCCATGCATAACCTGTGTAGAGTAAATTGAGGATCACTTCTATCAATGATAACCAGTGCTGTTTCAAGTTGGATTGTGTTGTGGCGCTCAAATTTCAGTTGTTCACACGACTAATCAAGATCCTGCATATAGGGGGACCTGGGAGTGGGAAAGGAACGCAATGTAGTAGGATCGCTTCGGATTTTGGATTTGCTCATGTGAGTGCTGGTGACCTTCTACGGAATGAAATAGCTTCTGGCACTGATCATGGGTAATTCTTCTTTCCGTTTGATCCTCTGACAGCCTTATAATGACCCACACGCACATGCATGGTTCGGTGAATTGATTTTTCAGTTTCATGGCATTTGCCAGGGAGTGGATCCTAGAGATAATAAGGGAAGGGAGGATTGTTCCATCAGAGATAACTGTTGAACTCGTCAGAAAAGCAATTGAATCAAGCTCTGCTAAAAGGGTTCTTATTGATGGTTTCCCAAGGTGTGAGGAAAACAGAATTGCCTTTGAAAAAATAGTAAGTTTTCTGTTTGGCTTGCATTACTGGTCCAGAACTTTCTATTGATTGAAATAGTATGTGATGAGATGGATAAGTCCATGCTGTTCATCAGTTTCTGTTCAATTTTTGGGAAGGCTAATAACAGGTGAATCTTCACGTTTTCTAGCGCTCTTGGCTGTAACCATTTGTGTATACACACTTGTCTTTACATTTTTACGCCAATATGCTGGCCCAAAACTGCCAGTGTACAGTATGCAATCAGCAGTTTCTTATGCATGTATTTTCTTTTAGTAGCAAATCAGTAACTATGTCCTGCTCTAGAGTGATGCACTTTTAGGATTTATGCAGTAGTCCACAGTTATGTCAGCCCCACTATGGTGGATGTATAGTTGCATCTCAACAACTACTACAAGCATTTATATCAAAGAATGTGTGTGCTGTGGTCGGGCAATTAGAAGACACTGGCATACCAACTAAGATATGTTTCATTGTTGTCCACTCAATAATTGCTAGTCAGATAGATGTAGATTGCATGATCCTGTTCTGATATGTTGACTCATAAATTTCAGACTGGAACTGAACCAGACCTTGTGCTTTTCTTTGACTGTCCTGAGGATGAGATGGTTAAACGTCTCCTAAGCCGTAACCAGGTTGGTCTTCGTATTATCTCTGGAGTAAATTGTGCTAGATATATATACACTATATGAGTACTGTACATTTCCCAATTCTTATTCGGAACTTACTCCATATGTGATTTTCTGAGATTTTATTTCCCAGCCGTTACTTTCGGCTTTGACAATTATCTTCTTATTACTCCCTCTCTTAACTAACATGAAATATAGCATTCCTAAAGGATAGTCCTTGTGGATTGCCACAAATGATTTTCTTCTTCATATGTCATTTAAATTGAAGAGAAGAAACACTAATCTAATTAGTGTAGTTCGTGCATATCAAAATGGGAGGTTGATTAATGCTCTAGCGGAGTTTCCTTTCAAAAATATCACATTAGATTGATCTCTTTATTGTTTTTGTTTTTTCGATTATCTCATGTATGCGTCTTAGGGACGAGTTGATGATAACATTGAGACAATCAAGAAGCGTCTAAAAGTATTCGAGAGTTTGAATCTTCCTGTTGTTGAGTACTACTCTTCAAGGGGAAAGGCACACAAGGTAATTAATCTATTTATTTTATGCCGAGTGTCCTGGACAGGAGCACTTCTTGTACCTTTCTTTTATGAACCGTACCTTTACCTTTTGACATGCATTTTCCTATTTCCTTCACACGGAAACAGAGCTCTACCTTCTGTTGTAGAAGTTGATCCAAAAGGCTTCTTAATGTGCAACATTAAACTATACCTGGCTTATTTTCTTGAACTTTTACAAATGCCAATATATATTTGAGAAACATCAAACATATGGGTTACCAATGTATAAATAGCAGGATAGTGTTTCCAGGGAATCATAGGACAGAGAGGCAGAGCCAGGATGCGATTCCCTCGTGTTCTGAATTCATATAACTGCAAGACCATTTTTCTATGGTGTGGGGAGGGGAGTGAGATCAGAGATCTGCGTATTTATTTGATATTAGATGAGTGTCTGCAATTCACTCATTTTGGAAGAAATTGCTAATCTCTTCAGAAGGGGTACATATCAGGGATATAACACAGTAACATATTCTGTATACCACTCATATTCAGGATCTGTAGGATGTCTTATTTATTTTTGAGACTTGACCTTTAGGGTGTCTAAGAGTACTTGTTGAACTCCATGCAGATAAATGCAACGGGAACTGAAGATGAAATCTTTGAAGCAGTTCGCAAGTTGTTTTCCTCCTTAAGGTAAATCCTGATGTTTAAGACACGAAATTCCTCTCATTTACTGTGACTATGTCCGCTCTCCTGAAGGAGATGCACATTCTTGCATCATCTGATTTCTGATTGCTTGCATATTATTTTCTAGTCCCAATTACTGTAGTTCTGAAAGCTTTTCAGTCCTCACATATTTAGCATATCCCAACCCTCAGTCCTCACATATATTGCAGCACCCACACTTTTTCAATACATTAACAAGTGATGGCATGTTCTTTATACTAAGCCTGCCATTGCAGCTAGGGCAGGCCGTCGCTATAAGCAGAAGGGTATTGCTTGTAGGTACAAAGAGCTTGCGTTCCTGAATCCTTGCCATTTGTGTTCACTGTGCACAATAAAGAAAGACAAACTGACAAGCAAAATGAACATGGTAGCATTTATCTTACTGATTGATGGATAAGGAAGAAGAGGTCCAGGATGTTGCTACGTCGCAAACTTTGTCATCTAGCTGACTCGCCGAACCCTCGCCTGTAGCTAGTTTCTCGACACGTTTGACTAAGCAACGCTAGCAACTTGCGGTTGTCCCAGCTTATGATAAAGATGCACTCCTACTTTGTTGCTACATATACACAAGGTAGTTGCAATCATTTGACCATTTCACCCTGTTTGCAGGCTATGAGGAGGCTGTCGTCTTCCGCGCGAGCGGGGGGAATTGGAATTACGCCTGGCGGAAATTCTCTCTCCCTCTTTTCTTTTACCTTTACATCTCTTAGCATAATAATTGTACATATTCTGATACACGGACCATTCCTGTGAAAACAGAGGGCCCCTGGTGAAACGCCCAGCCTGCCTGCTATGATAAACCCTGACCCTTGCGCTCTCGTCACGCGCCACGGTATACGATACTTCAGACTGCAGCAAAACTGCTACAACGATATTTTTTTTCTGCCAACACCCTACAAATATATGTCTGCCGTGTTTTTTTTACCAGGATAATATAGTTGTATGTATGTGCGCCGTGCTTGTGTTGTGACGATTTGCTGGGTATATATCTATGGAGAGATGAGGTGAGAGCTGCAGGCGTCCGATAAACTAGTGATTTGACTGGAGGAAAAAGGCCGTGTACGTTTGGATTTAGTTAATGTGAACTGCCGGCGTGTTATTGTCAGTTCTTGACCGGCCGTTTAGCAGTAGCTGATGCCATCTTCAAACGCTCGCCAAAAAAAAAAA
3
+ >2BS_5245544 8836 99090 5145698+,...,1324530+
4
+ CGCCACTGCCTCCAATTCACACATTCATGAAGTTCCGGATGTAGTTTTGGTCAAGTTTGAACCCATTTTTCCCTTTCAAAAGTCTTCATTACAAGTGTGAAGATCTCTGTCTATAGATTTGCCTAAAATGTACATTCATACATTCTGCTAGGTTCTACTCCCTCCGTCTCAAAATAAGTGACTCAACTTTGTACTAGCTCTAGTATAAATTTGTACTAAGCTCAAGACACTTATTCTGGGACGAAGGGACTATAATGTAATTATATATTGCGGGAGAAAATAATAGTCACATTTATGTGTGTCTTTTTTCCGCGGGGGCACATTTTATGTTTTCTTGATTGTGTGGATGTGCAAAACGCCATCTTTTTTCGGAGACAAGCACTTCAACTCCCCCTCTTTTGGGGGGATGGAAAGATATAGATGAGAAATTTTTGGCTGGCTATGACATGCCCGGTTGGAGTTTTGCTCCCCAAAAGTCTTCACATGACCTCACTCCATGGAGTCATGGCAGCTTGGTGCAGTCGATGCCGACGTTGCTCGTGACGAATCATCTTTCTCTCCATGCCTAGATTCCAACACAAATTTCAGGTTCACCTCAACCTCTTCATTCCCCGGATTATGTGCGTGCGATCGAGACAGTTTTCACATGCCCGGATTATGTACCTAGCCAAAAAAATAATAATAACGCTGCGATTTTTCCGCGTTTCGCGATCATCTATGTTGCCTTCGCGTGTGTGTTCATATCAATTTCGCGTGTTCCACTCGCAATCATGCGTGCTGCCTTTGCATATATTCCAATCGAATTCGTGTGTTCCATTCCTAGGATCCAAAGAGGCCCTCCGAGAAGTCCACCTGTCAGCGCGACGATGACGATGACGACACGCCGGCTCTGTAGCAAGTGCCAGGTGCCCGCGCTCCATGGCTTGCAAGGCGATGATGCAGGCAAGAAAAATGAGTCAATAGTAGCAGAGCTTTCTCCTCCCGTGGAGTGCACAGACAGACAATCTTTTGGAAACGGGGAGTTTTTAGATTAGACTTGGCGTGCAAGCGCCGGCGCTCCACATTTTTTTTTTCTTTCAAGATCGCATCAGCTAAACCTAAACGGCCGGTCAAGAACTGACAAAAACACGCCGGCGGTTCACACTAACTAAATCCAAACGTACACTCTCTTTTCCCTTGAGTCAAATCACTAGTTTATCGAACGCCTGCAGTTCTCACCTCGTATACAAATAGCAGATTGTCACCAGACAAGCACGGCGCACATACAACAATATCATATTCTAGTAAAAAAAACAACAACAGGGCAGGCATATACTCCCTCCGTCCAAAAATACTTGTCATCAAAATAGATAAAAGAGATGTATCTAGAACTAAAATATGTCCCATTTTGATGACAAGTATTTCCAGACGGAGGGAGTATATTGTTAGGGTGTTGGAAGAAAAATATCATTGTAGCAGTATTGCTGCCATACCAGCGTATCATGCGCTATACCGTGGCGCGCGACGGGAGCGTGAGGGTTAGGGTTTATCATAGCGGGCTGAGCGTTTCACCGGGGGCCCTCTGTTTTCACAGGCATGGACCGTGTATCAGAATATGTACAATTATTATGCCAAGACATGTAAAAGTAAATAAGGAAAGGAAGAGAATTTCCGCCAGGCGTAACTCTGATTCCCCCGGCTCCTGCGGAAGACGACGACAGCCTCCTCATAGCCTGCAAACAGGGCGAAACGGTCAAATCATTGCAACTCTCTTTTACTTATTATATTAGATAGAAGAAGATGCCGGTATTGCTTAGTCAAACGTGTCGAGAAACTAGCTACATGGAAAGGGTTCGGCGAGTCAGCTAGATGACAAAGTTAGCTACGTTGCAACCCCCTGGACCTCTTCTTCCTTATCCATCAATCAACAAGGCAGATGCTACTTTGTTCATTCATTTTGCTTGCCAGTTTGTCTTTCTTTATTGTGCACAATGAACACAAATGGCAAGGATCAGAAATTCAGTCTCTTTCTACCTACAAGCAATATCCTTTTGCTTATAGCGACGGCCTGCCCTAGCTGCAATGGCAGGCTTGGTATAAAGAACTCGTCATCACTTGTTAATGTATTGAAAAGTGTGGGTGCTGCAGCTTAGGCATTTAATTGGAAGGGTTAGGATATGCTAAATATGTGAAGACTGAAAACTTTCAGAACTAATTTGGCACTAGAAAATGATATGCAAGCAATCAGAAATCAGATGATGCAAGAATGTGCACCTCCTTCAGGAGAGCGGACATAGTCACAGTATATGAGAGGAATTCCGTGTCTTGAACATCAGGATTTACCTTAAGGTGGAAAACAACTTGCGAACTGCTTCAAAGATTTCATCTTCAGTTCCCGTTGCGTTTATCTGCATGGAGTTCAACAAGTACTCTTAGACACCCTAAAGGTCAAGTCTCGAAAATAAATAAGACATCCTACAGATCCTGAATACGAGTGATATACAGAATATGTTACTGTGTTATATCCCTGATATGTACCCCTTCTGAAGAGATTAGCAATCTCTTCCAAAATGAGTGAATTGCAGACACTCATCTAATATCAAATAAATAGGCAGATCTCTGATCTCACTCCCCTCCCCACACCATAGAAAAATGGTCTTACGGTTATATGAATTCAGAACATGAGGGAATCGCATCCTGGCTCTACCCCTCTGTCCTATGACTCCCAGGACATACTATCCTGCTATTTATACTTAGGTGACCCATATGTTTGAGGTTTCTGAAATATATATTGGCATTTGTACATGTTCAAGAGAATAAGCCAGGTATAGTTTAATGCTGCACCTTAAGAGACCTTTTTAATCAACTTCTAGAACAAAGGGTAGAGCTCTGTTTCCGTGTGAAGGAAATAAGAAAATGCATGTCAAAAAGTAAAGGTACGGTTCATAAAAGAAAGGTACAAGAAGTGCTCCTGTCCAGGACACTCTGCGTAAAATAAATAGATTAATTACCTTGTGTGCCTTTCCCCTTGAAGAGTAGTACTCAACAACAGGAAGATTCAAACTCTCGAACACTTTTAGACGCTTCTTGATTGTCTCAATGTTATCATCAACTCGTCCCTAAGACGCATACATGAGATAATCGAAAAAAACAGAAACAAATAGAGAGATCAATTTAATGTGATATATTTTATTTATTATTTTTAAAGGAAACTCCACTAGAGCATTAATGAATCTCCCATTATGATATGCACGAGCTACACTGATGAGATTAGTGTTTCTTCTCTTCAATTTAAATGACATATGAAGAAGAAAGAGCTACACTGATGAGATTAGTGTTTCTTCTCTTCAATTTAGATGACATATGAAGAAGAAAATCATTTGTGGCAATCCACAAGGAATATCCTTTAGGAATGTTAATATTTCATGTTAGTTAAGAGAGAGGGAGTAATAAGAAGATAATTGTCAAAGCCGAAAGTAACGGCTGGGAAATAAAATCTTAGAAAAACACATATCAAGTAAGTTCCGAATAAGAATTGAAAAATGTACAGTACTTATATAGTGTATAAATAGCACAATTTACTCCAGAGATAGTACAAAGACCAACCTGGTTACGGCTTAGGAGACGTTTAACCATCTCATCCTCAGGACAGTCAAAGAAAAGCACAAGGTCTGGTTCAGTTCCAGTCTGAAATTTATTAGTCAACATATCAGAACAGGACCATGCAATCTACATTTATCTGACTAACAATTATTGAGTGGACAACAATGAAACATATCTTAGTTGGTATGCCAGTGTCTTCTTATTGCCCGACCACAGAACACACATTTTCTTTGATATAAATGCTTGTATTAGTTGTTGAGATGCAACCATACATCCACCATAGTGGGGCTAACATAACTGTGGACTACTGCATAAAACCTAAAAGTGCATCACTCTAGAGCAGGACATAGTTATTGATTTGCTACTAAAAAAAATACATACATAAGAAACTGCTGATTGCATACCGTACACTGGCAGTTTTGGGCCAGCATATTGGCATAAAAAATGTAAAGACAAGTGTGTATACACAAATGTTACAGTCACAAGAGCTACAAAACTTGAAGATTCACCTGTTATCAGCCTTCCCGAAAACTGAACAGAAACTGTTGAACATCATGGACTTATCCATCTCATCACATACTATTTCAATTAATAGAAAGTTCTGGACCAGTAATGCAAGCCAAACAGAAAACTTACTATTTTTTCAAAGGCAATTCTGTTTTCCTCACACCTTGGGAAACCATCAATAAGAACCCTTTTAGCAGAGCTTGATTCAATTGCTTTTCTGACAAGCTCAACAGTTATCTCTGATGGAACAATCCTCCCTTCCCTTATTATCTCTAGGATCCACTCCCTGGCAAATGCCATGGCACTGACATATCAATTGACCGAACCATGCATGTGCGTGTGGGTCATTATAAGGCTATATCAGAGGATTGAACGGAAAGAGGTATTACCCATGATCAGTGCCCGAAGATATTTCATTGCGCAGAAGGTCACCAGCACTCACATGAGAAAATCCAAAATCCGAAGCGATCCTACTACATTGCGTTCCTTTCCCACTCCCAGGTCCCCCTACATGCAGGATCTTGATTAGATCATGTGAACATTTGAAATTTGAGCGCCACAACACAATCCAACTTGAAACAGCACTTATTGTCATGGGAGGGAAGGGATCCACAGTTTACTCTACACAGGATATGCATGGAATTTATAAATGTGAAACCAACCCTGCAACATTCTGGGAGTAAAAGCAGGGAAGAATTACCTAAGACGAAAGCGATGAACGGCCTGTCACCATCGCTTCCCTACAGAATGAACAGACGGCACATCGCCAAATTATTCACAAGAACTCTGCAAGATTTGTCACAAATAATAAGAATGCAGGCTTGGGAACGAACGTACAGCTAGGGACGTGAAGAGCCTGAGCAGATTCGGGGCCGGCGGTTTCTGCGAAGAGAACAGTCAGGCGGATGAGCATCTAGGAGCGAGAGGAACGTATTGACCCCCAATGGAGCGAGAGAGGCGAGCACGCCAGATCCGGTCCGGCCACGTTGTGCGCGCGTGCGAGGCGTTCGACGAAATGCGCAGGAGGAAAAGGAAAGGGGAACCGTGGGGTTACCTCGGCGTGGGTGGGGAGGAGGAGGTGGTGCTGCTGGTGGTGGCAGGAGGAAGCGACGGCGGAGGAGCACGGGGATCGGAGGAGAAGGGAGCTCAGCCGCCGCCTCAGCATCCCGACGCCGATCGCTCCCGCCTTGCTTGCCGTGCAGGGCAGGACAGAGGAGAAGCAAGGGGGGCTCGCCGTTCACCCCAGCCGCGGGAGGGGCCGAACGGCCGAGGTCGGCGGAGGGAGGGGCGGCGGCGAGCGGCCGTCGACTTGGCGTGGCGGGGAGCGGGGCCGGGACGGGGAGAGTTCGTCGTTTCTTTTCCTTTTCGGAGCTGCTTCTAATCGATGAAAGTGAAAAAAAAATGCCTTTTCCGCTTCGCGTGTCAGGCAGCGTGGAATATCTTGTGCTTTTAGCAAGGGGAAGCATGATGAATTGTCAAAAGCATAAATTGTTAGTATTTTTTATGGGTTGCGATAACTGCCACACGTGTGGCATGGATACGAACCCGCCCACACGCCTCGTGTGGCGTGAACAGGAACCCGCCCGCACGACCGCGTCCGGGCGCGCAATTGCACAGCCCGCACGTCCGGTGTGTGGCAACCCCGTCCGCACTGCTCCATCCGGGCCACACGACCCGCTGCCCGCACGACCCAGCCGTTCCCGTCCTCGCTCGATCGCCTCTCTCGACTGCCGCCATCGTCCCCCACCTCTCAAACACCTACCTCCGTCGCCGGCCTTCTCTGGTTGCCATGGAAACCAAAGCAGATTCGTAGGGCAAACCCACCGCAAACCACACCCCAACCCTCCCCAGCCCCAGCCCCCCACTCCAATCCAGCCCTTCAGAGACGATCAGCTAAAATCAGGTGAAAAATCTCCCGATCTCATCCTTCTCATCCTTCAGGCTGAAAATCTCCCCGATCTTGTACTGGATCCATGCTATAGGGGGCTGGCAACACCAGTAGTTCTGAGATCCAGTAGTTTTGTGATCTACGTGTTGATATTAACTTAAGTTCCTAGTTTGATTGACGCAAGTAGTTGGGTAGGCAAATGGATGAGTAGGAATCCCTGAAAAAAGGAGATGAAGGACAATTTTGGAATAAAGGGGGTGGGAAAAATTAATTGCCACTTGTGTACAACGATAGTTGCCACCTCTCGTTGTCAGTAGCTGCCACCTAGTTGACCTGTTGCTTGCCATCCCTATCTTCTCTGTGCAAGCAGCAGAAGAATACAATTCTTGTGGATTATTGATGCGTTCTTGATCATGCAGTGATTGAGAACATATTGGAAAGAAGCGAGCCACGGAAAGAATGAATCACGAAGATGGAGCTAATACTTGGGTTCTCAAAGGCCAGAAACGCCCCCTTGGGATGCATCAGAGTACAGTCAACTCATCTCTGCAGGGCCTTTGCTGCCACTACTAGAACAGTATACATGCATTGGTATGATGCGTGATAACAAAAATAAGAGAACAGTTGCCATCTTCGTAACGATGAAGATGACATTCTACTTATGTCATGCACTTTCATTTTTTCACAGGTTCTTATGACCAAAACACTCTCAGGGGCCCCCATGGCAAGTTCAGTTACAAGGCGCTAACACTAACAAATGTACGGGCAGCCAACTTCAACTAGCTAATGTGGCTAATCAAGGTAATGCATACGAAAAAAGAGCACATACTGGTGTGGACATGAAAAATGAACATGCAAAAAAATGGCAAAAGGACTCACGAGTTATCACGGGTGAAAAATGCAGAGCCTTCATGCAGCACGTGGCATCAGGCAGCACCCATGTACCTGCCATCGACGTCATACACAGGTGAGTCCATAAAAAGTGAAGTTGCGGATGCTCAATTAGCAGAAGGAACATGGTTGACAATTACACTTGCCATGACTGGACATCTACAATTGCCATGGTTAAATAACTGCAGTTGTCATCCCTGGACAAATGCTGTTGCCATCCATGGACAACTGCAGTTTCCATGGAGGAAGAACTGCAGTTGCCATGCTAGTGTAACTGCAGTTGCCATGCCATGACAACTTCAGTTGCCATGGAGGAACAACTGTAGTTGCCATACGAGTGCAACTACAGTTGCCAAGCCAGGAAAACTGCAGTTGCCACATCAGGGGCAACTAGAGTTTCCGTGCTAGCACAAACTGCATTTTCCATGAATTGACCAACCACTACTATGCTTACAGGTTATTACGGTGGTGGTAACCGGGCAAACGTCTCGTGGCAAGATTCACAAATTGCAGGTGGAGCACGTCATTTTGGTGTCACAGACCACACAAGATGGTCACATGCAGCACAACAAGGTAAAGAAAAAAACTGAACCACAAAACAGCACTACATTTGTTTTGGTGGCAAAAAAAGCACGTGCCGAAAAAAAGAATTGAAGCAGTGATGGTGGACAAGAACGAAGCATAAAACACTGAAAAAGTGGTTGCGTGCAAATGAGTCATGTATTGTCTTTGAAAAATTGCCAACTGCTAAAAGCATGTACGCATCACTAATGGTTGAACACATTTCGCCTAGTGAGATCAATCTTATAATGCAGTAGTTTTGTTGCGAGAACACAGTGGTTGCCATTTGTTGGTTGCAGTGTTTGCCATGAATGCAGGACTGCAGCTGCCATGCATATAGAACCCAAGTTTTCCTACTAAAAAAAGGAGCGTGTTGTCGTGCATTGGCAGACATTGGTTGCCATGTTTGTTGAACTGTACCTGCCATGAATGGACAGCTACATTTGCCACACATGTCCACGCGCGAACTGACATCTTGATGTTCGAATGATGTAATGCCAAATCACTCGATGTTAATGTCATCTGTTGCGATAAACATGTTATTCAAACAAAAAAATCTTACTCTCGTACCTGTTTTTTCCATTACAGGGCCTACAACTACACTGAACAGCGGCACGGGCACATCTACTGCGGGAAGCTCTGAGCGCACAGAAGACGCGTTCCCCCAGCCAGCAAACAATCATGCCGCAAATAATGCCGAGTCAGTGTCAGAAATGGCAATCATTCCAGCAATTCCCACAACCACCCCTTTGAACGCAAGCACTGGCAACATTCAAATCGATGAAACTGCTGCCGATACTGAAGTGAATGATGAAACTGACGACGAGGCACAAGGGGATGAAGATGATGGGCAACCAGATATCATGGTACCTCTGCCACCATACGTTGGGCAAAGATTTGAATCGTTTGAAGAAGCAAAGGAATTCTACCAGACATATGCAAAGTTTCATGGGTTTGCCGTCAACACCGAATACCATAGAAAAATTAAGAAAACTAATGAGTACAACAGAGGTGAGATGTGGTGCCACAAGGTACGAAGGAACAAGAAAGGGAAAGGTGTTGCGCCTGTCGTTCCGAAACGAAAGAGAGGGATCATTCTCAAGACGGGTTGCCCTGTCCGGTGTAAGCTAAACATAGATGGAACACAATATGTGGTCACTGAGTATTTTGACGAGCACAACCACAAACTCATAAAGAAGTTTGATCTGGTCAAATTTCTGACCGCCCACAGAGGGTTCACCCCAGTCGAAAGGCAATTCGTAAAGCTGCTACATGATTGTAACATCGGTCCATCAAGAATGGTCCAGATACTATCACTCATCCAGCAAAAAGGGGAAACTGAGTAGCATGCCGTACATACCAGCTGACGTCACAAACCTACAGGCCAAGTACCATAGAGAGAGCAAG
5
+ >2BS_5163353 11974 190831 503566-,...,5145698-
6
+ ATGTAGTGGTGGTGTGTGAGCGACATTTGAATAGTTTCTGTAATATATGTGTGGATGTGAACCTACTTAGGCGTGACAGCAGATATGTTTTTTATATTTATCATTATTACTGTGGTTTCATCGTTTGTATCACCCGTTTGCTGTTTTGAATGCATCACGATGTTTTAAAACATGGCAAATGTAGTTCATCAGACATGGTTAGCGAAAGTCATCGTCATTGTTCATTTGGACATTTTGCTTCTCCTATTTCATCACTAACTTCACCGGCTAGCATGGTAGGTTGATCATGGAGCCACAACCTTTGATGCGGTTTATGCACATTACGCTTTTTCTAACTTGTTTCCCATATATTGCACACAACACAATATGTGTCACTAAACCGCGTCGATTTTGTCATATAAATATATGCGATGCAGAGTCATTACAAATACCATGGCATATTTTCAGTACAGCTAACATGGCAGATCCAGTACAAACAACACGGCAGATCCAGCATAATTAACATGGCAGATCCAGCATAACTAACATGGCAAATCCAGTACAACTAACATGGCAGATCCAGTGCAACTAGCATTGCATATTTTTCAGTATAAAATAGTATGGCATATTTTTAGTACAAAATAGCATGGCATATTTTTAGTATAAAATAGCATGGCAGATTAACTACATATAACATGGCAGATTAAGTACCCATACCATGGCAAATTAAGTACCCATAACATGGCAGATTAAGTACCAACAATATGGCAACTACATTTACCCATTCAATGCATTCTCCTTCAACTTCTGAAGCCCCTCTAGAGTCATTATCCCAAATCAAAAAAGTTCACAGCATATAGGGTACAAAACAAATGTCCACAATGACCATGTCACAGTGCCCCAACTTTTGCTTACGGATTGCCCGTCCCTTTCTTCGTTTTCTTGTGTTTTGCTTGAATCTCCAATCCCGATTTTTACCTTATCTCTCTTGGACGACCCTTTGTGATGGAACGGGGTGGGTTCCTGACCTGGGTTTGTGTGCTTGCTGTTCCAGATCCTATCTCAGAGTTTTCAAATGATGGCCCCATGGATGAAGGCACACTTGATGTGCGGGGGAACCGGTGTAAGGCTTCCTCAGCTTTCCTCTTCTTGATCTCATCAAGCTCTCTTTTCAGGGCCTTCCTGTGTTTTTCTGCGACTCTCGTTGTCTCATCACTCTTGCACGCTTCATCAATTAGCTCAGCATAGTTCTTTGTCAACACAACATGCCTCACGGCTTCCATGGTTGCCTCAGGTCTCTCGTCATGCACAGCCAGAACTGCATTTGTTGTCTGCGGCGCAAACGCGTCGTCAGCGTCCCAAGTCCATCGCCACCTTATGAAATGGCGGGGCATGCGTGTCACAGCGTTCTCCATTACTTTCAGTATGTGACAACACACAATGTCGTCCCGTTCAAACTTGCAGCATTGGCAGTAGTATTGCCTTGTTCGATTGAGGCTTTCACGAAGTAGTTCCTTCCTTTGTCCGGGTCTTCAGGTTCTGAATCCGACATGCCCAAAATAGAACACACCTTGAACGTATGTTCGTCCGCCTGGAAAGCCGTGAACATGCTGGCACGCTTTATTTCTTCCTTGAATCTGCAAGTTTTGTGTGTTTTCTATTAAACTATCGTGTGATCTTTTTTTGTAGCATCTTATGTTGTCATGGAAATAGAAATAGATTTTTGTTTGAACATGGCAAACATAGTATACTAAACATGGCAAACATAGTGCACTAAACATGGCAAACATAGTACACTGAACATGGCAACTGCAGTAAACTATACAAGGCAACTGTATTGCATTTTCAACTGACCATTGTCATTTCCACACCAACACTCCTCACTGGAAGCCCTTTGCATAAAACATGGCAACTGAATTTTTATTGAACATGGCATCTACAGTTGAGTAAACATGGCAACTGCATTTTTCAACAAACATGGAAGTTTTGCATTTTTAGAAAACATGGCAACTGCATTTCATCAAATGTGTCTAGAATATAACGTTTTTCAGTTGACATTGGCATTTGCATACCAACATGCCCCAATGGCAGTACAGTGCATTAAACATGGCAACTGCACTTCATTAAACATGACAAACAAATTTTTCATTAAACATGGCAACTGCAATTGAGTAAGCATGGCAAACAGTATTTCATTACACATGGCAACTGCATATCATGGCAACTGCATTGCACCCTATAAGGCACCTACTGCCTTAGTGCTTTTTTTGCAAATAAGACTGTAATGCAACTGACTTACTTGTTAAAGATCTTGTTTGTGTATATCTTGCTCATTTGCCTCTCCATCGGTAAATACGTTAGCAATTTTGGCTGCTTTAGCGCGGTGGTAGCTTCTTGCTGCAGCTCAGATCCCAGAATTTTTTGTTGCAAAGCTGTGTACTGCTTGACAAACTGTAGCAATGAGTTGCCAGGGCTCACGTACCGCTTCAAAACAGCATTGAACCCCTCGCTGCACTGCGTAGTCTGCAGAAAGGGAAAGAAGCACTGCATGAAGTAGACTGGCACCCAGTACATTCGCTTCTCCCACAGGTTAGCAAGCATCTTGTTGTCTTGGACTTGATATGTTTCAATCATGGCCATCCAGCTCCTTTCAAACTCCTCCACCGTCAAGTTGTGGTCCATGCACAGCTCGAACGCCTTGTGGAGCTCTGGACGGTCAGCAAAGAACGGTCCTAGCGTCTCTTCAGCCCTCTTTATAATGTGCCACCTGCAGTGCCTGTGCACTGCCAACGGAAATACCTCCTATATGCCTGCACGCATGCTGAAATCCTGGTCTGTTATTATGTTCATCGGAGCAAGTCCATCCATGCACTCCAAGAAGGTCTTGAACAACCAAACGTACCCATCCGTGTCTTCGTTCCGAACGAGCCCGCAGCCGAACTGCAATGACTGATTGTGGTTATTTATTCCTATGAACGGAGCGCATGGCATCTTGTACATATTAGTCAGATACATCGCGTCGAATGAAATGCAATCTCGAAAATGTTTGTAGGCTCTCCTTGCAGCACCATCCACCCAATACATGTTCCTGACACGGTCCTCATCGTCCAATCTTATCCTGTAGAAGAAATCTGGATCTTCCTTCGCTTTCTCATCGAAGTAGGCCATTGTGACCTCTATGTCAGCAAGCTTGCTCTCTCTATGGTACTTGGCCTGTAGGTTTGTGACGTCAGCTGGTATGTACGGCATGCTACTCAGTTTCCCCTTTTTGCTGGATGAGTGATAGTATCTGGACCATTCTTGATGGACCGATGTTACAATCATGTAGCAGCTTTACGAATTGCCTTTCGACTGGGGTGAACCCTCTGTGGGCGGTCAGAAATTTGACCAGATCAAACTTCTTTATGAGTTTGTGGTTGTGCTCGTCAAAATACTCAGTGACCACATATTGTGTTCCATCTATGTTTAGCTTACACCGGACAGGGCAACCCGTCTTGAGAATGATCCCTCTCTTTCGTTTCGGAACGACAGGCGCAACACCTTTCCCTTTCTTGTTCCTTCGTACCTTGTGGCACCACATCTCACCTCTGTTGTACTCATTAGTTTTCTTAATTTTTCTATGGTATTCGGTGTTGACGGCAAACCCATGAAACTTTGCATATGTCTGGTAGAATTCCTTTGCTTCTGCAAACGATTCAAATCTTTGCCCAACATATGGTGGCTGAGGTACCATGATATCTGGTTGCCCATCATCTTCATCCCCTTATGCCTCGTCGTCAGTTTCATCATTCATTTCAGTATCGGCAGCAGTTTCATCGATTCAAAGGGGTGGCTGTGGGAATTGCTGGAATGATTGCCATTTCTGACACTGACTCGGCATTATTTGCGGCATGATTGTCTGCTGGCTGGGGGAACGCGTCTTCTGTGCGCTCAGAGCTTCCCGCAGTAGATGTGCCCGCGCCGCTGTTCACTGTAGTTGTAGGCCCTGTAATGGAAAAAACAGGTACGGGAGTAAGATTTTTTGTTTGAATAACATGTTTATCGCAACGGATGACATTAACGTCGAGTGATTTGGCATTACATCATTCGAATAGCAAGATGTCAGTTTGCGCGTGGACATGTGTAGCAAATGTAGCTGTCTAGTCATGGCAGTTACAGTTCAACAAACATGGCAACCACTGTTTGCCAATGCACGACAACAAGCTCCTTTTTTTAGTACGAAGACTTGGGTTCTATATGCATGGCAGCTGCAGTCCTGCATTCATGCAAACACTGCTACCAACAAATGGCAATCACTGTGTTCTAGCAACAAAACTACTGCATTATAAGATTGATCTCACTAGGCGAAATGTGTTCAACCATTAGTGATGCATACATGCTTTTAGCAGTTGGCAATTTTTCAAAGACAATACATGACTCATTTTGCACGCAACCACTTTTCAGTGTTTTATGCTTCGTTCTTGTCCACCATCACTGCTTCAATTCTTTTTTTGGCACGTGCTTTTTTTTGCCACCAAAACAAATGTAGTGCTGTTTTGTGGTTCAGTTTTTTTCCTTACCTTGTTGTGCTGCATGTGACCATCTTGTGTGGTCTGTGACACCAAAATGACGTGCTCCACCTGCAATTTGTGAATCTTGCCACGAGACGTTTGCCCGGTTACCACCACTGTAATAACGTGTAAGCATAGTAGTGGTTGGTCAATTCATGGCAAATGCAGTTTGTGCTAGCACGGGAACTGTAGTTGCCCCTGATGTGGCAACTGCAATTTTCCTGGCATGGCAACTGTAGTTGCATTGGTATGGCAACTGCAGTTGTTCCTCCATGGCAACTACAATTGTCATGGCATAACAACTGCAGTTACACTGGCATGGCAACTGCAGTTCTTCCTCCGTGGCAACTGCGGTTGTCCATAGATGGCAACAACAGTTGTCCAGGGATGACAACTGCAGTTATTTAACCATGTCAATTGTAGATGTCCAGTCATGGAAAGTGCAATTGTCAACCATGCTCCTTCTGCTAATTGAGCATCCGCAACTTCACTTTTTTATGGACTCACCTGTGTATGACGTCGATGGCAGGTACATGGGTGCTGCCTGATGCCACGTGCTGCATGAAGGCTCTGCATTTTTCACCCCTGATAACTCGTGAGTCCTTTTGCCATTTTTTTGCATGTTCATTTTTCATGTCCACACCAATATGTGCTCTTTTTTCGTATGCATTACCTTGATTAGCCATATTAGCTAGTTGAAGTTGGCTACCCGTACATTTGTCAGTGTTAGCGCCTTGTGACTGAACTTGCCACGGGGGCCCCCTGAGAGTGTTTTGGTCATAAGAACCTGCGAAAAAAATGACAATGCATGACATAAGTAGAATGTCATCTTCATCGTTACGAAGATGGCAACTGTTCTCTTCTTTTTGTTATCACGCGTCATACCAATGTCTGCATATTGTTCTAGTAGTGGCAGCAACGGCCCTGCAGAGATGAGTTGACTGTACTCTGATGCATCCCAAGGGGGCGTTTCTGGCCTTTGAGAACCCCAAGTATCAGCGCCATCTTTGTGATTCATTCTTTCCGTGTCTCACTTCTTTCCAATATGTTCTCAATCACTGCATGATCAAGAACGCATCAACAATCCACAAGAATTGTATTCTTCTGCTGCTTGCAGATAGGGATGGCAAGCAACAGGTCAACTAGGTGGCAGCTATTGACAACGAAAGGTGGCAACTGTCGTTGTACACAAGTGGCAATTAATTTTTCCCACCCCCTTTATTCCAAAATTGTCCTTCCTCTCCTTTTTTAGGGATTCCTACTCATCCATTTGCCTACCCAACTACTTGTGTCAATCAAACTAGGAACTTAAGTTAATCTCAACACGTAGATCACAAAACTACTGGATCTCAGAACTACTGGTGTTGCCACCCCCTATAGCATGGATCCAGTACAAGATCGGGGAGATTTTCAGCCTGAAGGATGAGAAGGATGAGATCGGGAGATTTTTCACCTGATTTTAGCTGATCGTCTCTGAAGGGCTGGATTGGAGTGGGGGGCTGGGGCTGGGGAGGGTTGGGGTGTGGTTTGCGGTGGGTTTGCCCTACGAATCTGCTTTGGTTTCCATGGCAACCAGAGAAGGCCGGCGACGGAGGTAGGTGTTTGAGAGGTGGGGGACGATGGCGGCAGTCGAGAGAGGCGATCGAGCGAGGACGGGAACGGCTGGGTCGTGCGGGCAGCGGGTCGTGTGGCCCGGATGGAGCAGTGCGGACGGGGTTGCCACACACCGGACGTGCGGGCTGTGCAATTGCGCGCCCGGACGCGGTCGTGCGGGCGGGTTCCTGTTCACGCCACACGAGGCGTGTGGGCGGGTTCGTATCCATGCCACACGTGTGGCAGTTATCGCAACCCATAAAAAATACTAACAATTTATGCTTTTGACAATTCATCATGCTTCCCCTTGCTAAAAGCACAAGATATTCCACGCTGCCTGACACGCGAAGCGGAAAAGGCATTTTTTTTTCACTTTCATCGATTAGAAGCAGCTCCGAAAAGGAAAAGAAACGACGAACTCTCCCCGTCCCGGCCCCGCTCCCCGCCACGCCAAGTCGACGGCCGCTCGCCGCCGCCCCTCCCTCCGCCGACCTCGGCCGTTCGGCCCCTCCCGCGGCTGGGGTGAACGGCGAGCCCCCCTTGCTTCTCCTCTGTCCTGCCCTGCACGGCAAGCAAGGCGGGAGCGATCGGCGTCGGGATGCTGAGGCGGCGGCTGAGCTCCCTTCTCCTCCGATCCCCGTGCTCCTCCGCCGTCGCTTCCTCCTGCCACCACCAGCAGCACCACCTCCTCCTCCCCACCCACGCCGAGGTAACCCCACGGTTCCCCTTTCCTTTTCCTCCTGCGCATTTCGTCGAACGCCTCGCACGCGCGCACAACGTGGCCGGACCGGATCTGGCGTGCTCGCCTCTCTCGCTCCATTGGGGGTCAATACGTTCCTCTCGCTCCTAGATGCTCATCCGCCTGACTGTTCTCTTCGCAGAAACCGCCGGCCCCGAATCTGCTCAGGCTCTTCACGTCCCTAGCTGTACGTTCGTTCCCAAGCCTGCATTCTTATTATTTGTGACAAATCTTGCAGAGTTCTTGTGAATAATTTGGCGATGTGCCGTCTGTTCATTCTGTAGGGAAGCGATGGTGACAGGCCGTTCATCGCTTTCGTCTTAGGTAATTCTTCCCTGCTTTTACTCCCAGAATGTTGCAGGGTTGGTTTCACATTTATAAATTCCATGCATATCCTGTGTAGAGTAAACTGTGGATCCCTTCCCTCCCATGACAATAAGTGCTGTTTCAAGTTGGATTGTGTTGTGGCGCTCAAATTTCAAATGTTCACATGATCTAATCAAGATCCTGCATGTAGGGGGACCTGGGAGTGGGAAAGGAACGCAATGTAGTAGGATCGCTTCGGATTTTGGATTTTCTCATGTGAGTGCTGGTGACCTTCTGCGCAATGAAATATCTTCGGGCACTGATCATGGGTAATACCTCTTTCCGTTCAATCCTCTGATATAGCCTTATAATGACCCACACGCACATGCATGGTTCGGTCAATTGATATGTCAGTGCCATGGCATTTGCCAGGGAGTGGATCCTAGAGATAATAAGGGAAGGGAGGATTGTTCCATCAGAGATAACTGTTGAGCTTGTCAGAAAAGCAATTGAATCAAGCTCTGCTAAAAGGGTTCTTATTGATGGTTTCCCAAGGTGTGAGGAAAACAGAATTGCCTTTGAAAAAATAGTAAGTTTTCTGTTTGGCTTGCATTACTGGTCCAGAACTTTCTATTAATTGAAATAGTATGTGATGAGATGGATAAGTCCATGATGTTCAACAGTTTCTGTTCAGTTTTCGGGAAGGCTGATAACAGGTGAATCTTCAAGTTTTGTAGCTCTTGTGACTGTAACATTTGTGTATACACACTTGTCTTTACATTTTTTATGCCAATATGCTGGCCCAAAACTGCCAGTGTACGGTATGCAATCAGCAGTTTCTTATGTATGTATTTTTTTTAGTAGCAAATCAATAACTATGTCCTGCTCTAGAGTGATGCACTTTTAGGTTTTATGCAGTAGTCCACAGTTATGTTAGCCCCACTATGGTGGATGTATGGTTGCATCTCAACAACTAATACAAGCATTTATATCAAAGAAAATGTGTGTTCTGTGGTCGGGCAATAAGAAGACACTGGCATACCAACTAAGATATGTTTCATTGTTGTCCACTCAATAATTGTTAGTCAGATAAATGTAGATTGCATGGTCCTGTTCTGATATGTTGACTAATAAATTTCAGACTGGAACTGAACCAGACCTTGTGCTTTTCTTTGACTGTCCTGAGGATGAGATGGTTAAACGTCTCCTAAGCCGTAACCAGGTTGGTCTTTGTACTATCTCTGGAGTAAATTGTGCTATTTATACACTATATAAGTACTGTACATTTTTCAATTCTTATTCGGAACTTACTTGATATGTGTTTTTCTAAGATTTTATTTCCCAGCCGTTACTTTCGGCTTTGACAATTATCTTCTTATTACTCCCTCTCTCTTAACTAACATGAAATATTAACATTCCTAAAGGATATTCCTTGTGGATTGCCACAAATGATTTTCTTCTTCATATGTCATCTAAATTGAAGAGAAGAAACACTAATCTCATCAGTGTAGCTCTTTCTTCTTCATATGTCATTTAAATTGAAGAGAAGAAACACTAATCTCATCAGTGTAGCTCGTGCATATCATAATGGGAGATTCATTAATGCTCTAGTGGAGTTTCCTTTAAAAATAATAAATAAAATATATCACATTAAATTGATCTCTCTATTTGTTTCTGTTTTTTTCGATTATCTCATGTATGCGTCTTAGGGACGAGTTGATGATAACATTGAGACAATCAAGAAGCGTCTAAAAGTGTTCGAGAGTTTGAATCTTCCTGTTGTTGAGTACTACTCTTCAAGGGGAAAGGCACACAAGGTAATTAATCTATTTATTTTACGCAGAGTGTCCTGGACAGGAGCACTTCTTGTACCTTTCTTTTATGAACCGTACCTTTACTTTTTGACATGCATTTTCTTATTTCCTTCACACGGAAACAGAGCTCTACCCTTTGTTCTAGAAGTTGATTAAAAAGGTCTCTTAAGGTGCAGCATTAAACTATACCTGGCTTATTCTCTTGAACATGTACAAATGCCAATATATATTTCAGAAACCTCAAACATATGGGTCACCTAAGTATAAATAGCAGGATAGTATGTCCTGGGAGTCATAGGACAGAGGGGTAGAGCCAGGATGCGATTCCCTCATGTTCTGAATTCATATAACCGTAAGACCATTTTTCTATGGTGTGGGGAGGGGAGTGAGATCAGAGATCTGCCTATTTATTTGATATTAGATGAGTGTCTGCAATTCACTCATTTTGGAAGAGATTGCTAATCTCTTCAGAAGGGGTACATATCAGGGATATAACACAGTAACATATTCTGTATATCACTCGTATTCAGGATCTGTAGGATGTCTTATTTATTTTCGAGACTTGACCTTTAGGGTGTCTAAGAGTACTTGTTGAACTCCATGCAGATAAACGCAACGGGAACTGAAGATGAAATCTTTGAAGCAGTTCGCAAGTTGTTTTCCACCTTAAGGTAAATCCTGATGTTCAAGACACGGAATTCCTCTCATATACTGTGACTATGTCCGCTCTCCTGAAGGAGGTGCACATTCTTGCATCATCTGATTTCTGATTGCTTGCATATCATTTTCTAGTGCCAAATTAGTTCTGAAAGTTTTCAGTCTTCACATATTTAGCATATCCTAACCCTTCCAATTAAATGCCTAAGCTGCAGCACCCACACTTTTCAATACATTAACAAGTGATGACGAGTTCTTTATACCAAGCCTGCCATTGCAGCTAGGGCAGGCCGTCGCTATAAGCAAAAGGATATTGCTTGTAGGTAGAAAGAGACTGAATTTCTGATCCTTGCCATTTGTGTTCATTGTGCACAATAAAGAAAGACAAACTGGCAAGCAAAATGAATGAACAAAGTAGCATCTGCCTTGTTGATTGATGGATAAGGAAGAAGAGGTCCAGGGGGTTGCAACGTAGCTAACTTTGTCATCTAGCTGACTCGCCGAACCCTTTCCATGTAGCTAGTTTCTCGACACGTTTGACTAAGCAATACCGGCATCTTCTTCTATCTAATATAATAAGTAAAAGAGAGTTGCAATGATTTGACCGTTTCGCCCTGTTTGCAGGCTATGAGGAGGCTGTCGTCGTCTTCCGCAGGAGCCGGGGGAATCAGAGTTACGCCTGGCGGAAATTCTCTTCCTTTCCTTATTTACTTTTACATGTCTTGGCATAATAATTGTACATATTCTGATACACGGTCCATGCCTGTGAAAACAGAGGGCCCCCGGTGAAACGCTCAGCCCGCTATGATAAACCCTAACCCTCACGCTCCCGTCGCGCGCCACGGTATAGCGCATGATACGCTGGTATGGCAGCAATACTGCTACAATGATATTTTTCTTCCAACACCCTAACAATATACTCCCTCCGTCTGGAAATACTTGTCATCAAAATGGGACATATTTTAGTTCTAGATACATCTCTTTTATCTATTTTGATGACAAGTATTTTTGGACGGAGGGAGTATATGCCTGCCCTGTTGTTGTTTTTTTTACTAGAATATGATATTGTTGTATGTGCGCCGTGCTTGTCTGGTGACAATCTGCTATTTGTATACGAGGTGAGAACTGCAGGCGTTCGATAAACTAGTGATTTGACTCAAGGGAAAAGAGAGTGTACGTTTGGATTTAGTTAGTGTGAACCGCCGGCGTGTTTTTGTCAGTTCTTGACCGGCCGTTTAGGTTTAGCTGATGCGATCTTGAAAGAAAAAAAAAATGTGGAGCGCCGGCGCTTGCACGCCAAGTCTAATCTAAAAACTCCCCGTTTCCAAAAGATTGTCTGTCTGTGCACTCCACGGGAGGAGAAAGCTCTGCTACTATTGACTCATTTTTCTTGCCTGCATCATCGCCTTGCAAGCCATGGAGCGCGGGCACCTGGCACTTGCTACAGAGCCGGCGTGTCGTCATCGTCATCGTCGCGCTGACAGGTGGACTTCTCGGAGGGCCTCTTTGGATCCTAGGAATGGAACACACGAATTCGATTGGAATATATGCAAAGGCAGCACGCATGATTGCGAGTGGAACACGCGAAATTGATATGAACACACACGCGAAGGCAACATAGATGATCGCGAAACGCGGAAAAATCGCAGCGTTATTATTATTTTTTTGGCTAGGTACATAATCCGGGCATGTGAAAACTGTCTCGATCGCACGCACATAATCCGGGGAATGAAGAGGTTGAGGTGAACCTGAAATTTGTGTTGGAATCTAGGCATGGAGAGAAAGATGATTCGTCACGAGCAACGTCGGCATCGACTGCACCAAGCTGCCATGACTCCATGGAGTGAGGTCATGTGAAGACTTTTGGGGAGCAAAACTCCAACCGGGCATGTCATAGCCAGCCAAAAATTTCTCATCTATATCTTTCCATCCCCCCAAAAGAGGGGGAGTTGAAGTGCTTGTCTCCGAAAAAAGATGGCGTTTTGCACATCCACACAATCAAGAAAACATAAAATGTGCCCCCGCGGAAAAAAGACACACATAAATGTGACTATTATTTTCTCCCGCAATATATAATTACATTATAGTCCCTTCGTCCCAGAATAAGTGTCTTGAGCTTAGTACAAATTTATACTAGAGCTAGTACAAAGTTGAGTCACTTATTTTGAGACGGAGGGAGTAGAACCTAGCAGAATGTATGAATGTACATTTTAGGCAAATCTATAGACAGAGATCTTCACACTTGTAATGAAGACTTTTGAAAGGGAAAAATGGGTTCAAACTTGACCAAAACTACATCCGGAACTTCATGAATGTGTGAATTGGAGGCAGTGGCG
7
+ >2DS_5334799 7226 338754 1380402+,...,2126614-
8
+ GCGACACCTGGACCAGCGGCGAGTTGTACCGCAGGCCGGGGCCGGGCGGCGCCTCCGTCCCCTGCTCCTGCTCCTGCGGGGACCCGGCCTCCGGCAGCTCCGTCGACACGGCCATTTCGTCACTCTGAACGGGCGGGCCGGCGGAGGGGAGTGAGGACGGCAGGTGGGTGGGTGGAGACAAATCGGCGGAGACGAAGGCGAGGTGGAAGACGATCGGCGGAGGTGGCGGTATTTATAGATGGGATCTTGGTGGCTCCTCTGTTTGATTCTGTTGCCAAGGGGGAGAAAGAGACGGCGACATTGAGGACGAGCAGAGGGCGACATTTGGAGCATCATTAGTCAGTGATGATTGCATTTAATCAGTATATTTGGGAATTTAATTACTGCCCATTTATCAGTTCAGATATGTACATCGTCTTTAATGTGGATATTTATTTGAGGGAGTAATAAGCAAAGATTGTTACAGAGTTTTTCCTTTTTTTTTTGAAATTTTCGAAAATATGTTCGACGTGGCAAAAAAAAAGACCGTAATAGCTGGCGAACGTTCGTTGTGAGGGGTGGTATTGCGAACATTTTTGCTGACAGTTTTTTCAGAGACACATGACAATTTTTTTAGATACGCATGACGGTTTCTGGAAAGAAGACTGCGGCAAAAACAAGCAGAATTAGCCATCTCCTACCACCTAAAAATGCCTTAAGAAATTGTTCGCTTGTCACCCTCCTCCCAGGAAACGTTCGCTTGTTAGTATTTTTGAAAGAAAAGGGCCCCACTCAAATTTTGGATCTTTTTGTTTCCATTCATTCGTTTTGGAGCGGTGTAGGGGAGACAGACGAATTTTGAAGATAGAATTTGTGACATTTGGTTTGGAGCATCATCATCATCGCCAATTGGAATGCACACTGAATTAAATTTTGCGAGATATGGCATTCTATTTTCATAAGTTCTTATTACAAATCATCATGATCTCCATAACACATACGCGAGTTGGAAGGAGATTTGTGCACACACGAGATGAGCCGACAGAGATGAGAAGGGGTGAAAGATAGGAGAGTCGAATATGCCGATTTGAAGAATCACCAAACTACATATAGTAAACAATTATTAATTTTCATGAGGGATATTCCGGCATTTTAACAATGGTTGCTAGGTACTAAGGATTTCTTTTCTGTGGGACTTGGCAGTCCTTCCACTCAATTTGTTCAACACACAAGTGGGTATATATATGGCAGATACGGTATAATATAAGACACAAAGGCACAGAAGAGGATTTGTGGCTCTCGGGTGCCACGCACCCCTATATGAATATAGCATTAAAAACATATTGCAAATTTTAAAAAATTCTAAAATTTTGGAATATGAACCTGGGTGCCTGTTGTACACTCGTCTTCAACTTCGTGGGGAATGAGTGCCCGTGTTCATCTCAGTAAAAAGGACAAAAAAAATCGTATGTATAGAAAAAGATAATTGGATGTAATGTATGTCAGACCGGAACTCCAGTGCCATGGATACCACGGGCAACCATTCCCAGCGAAAATGAAACAAGTGTGCAATCAATGGTCACCTAGGTTTGATATCCTAAAATATCTGATTTTTGTGAAATTTTCTGATATTTTCTTAATGCTAGTTTCATATAGGGGTACGTGACACTCGGGTGCTCCAATGCATTTCCCACAAGGGCACACGACCTTATCCCTGTCAAAAGACTCATCCTACATTGATAAATATGACTTGGCAGTGGGGCCAGCAACAGCAAGATGAGCGTCCCAACATCCCCTTGTTCTTTCTTTGGAGGATCGATGTTCCTCCATCCAACATTGCTTGGTTGATTGCCACAAGGACGCAGGGCTGAGATTCTCGGTCCTGGGATTTTGGAATTTTGCTCGCAACTTGCAGCGCAGCTGCGTCCCTGTCCTTCCTAGTGAATCACCTTCGCCCGTTGTTTGGGGCATAGGACAAATACACCCAGCTAATCATAGATTCATAGGGAGGGGGTCATAATCCTGGCTAGCTTTCACCGTTAGCGGCAGCTAGCTGGTTAATCATGCAGGCTCACACGAGGCTAGCGGCCCCCTAGTAGAGTCCAAAATGGACCTTTCCTCTGTTTTACCATCTCCGTCTGAGAAAGTGACAAGATGTGGCATCTTAGTAGTTGTTGTTAACTGCAGAATGCTCCCACCATGAAACCTTTGATTTTCATTCTAAAAGGACACCTTCGATTTTCCGAAAAAATGACATTGCGATATTTCCTCCCTTTGCGAAAGTGGGGGCGATTTGGGGATGTGTTCGTAGGATCAGCAGAGTGCGAGTGTCCTCACTACTTAGTGGACTAGGAACACCAATTACCATTCAGCATGGATGGTGGGCTATCTCAAAAACAATGAACAAAGACTAGGAACACCAATTTTTAGGAGTGTCAGCTAGCTGGTTAATCATGCAGGCCAACACGAGGTTAGGAGCTCCCTAGAGTCTAGAATAGATCATTTTCTCCGTTTCACTACCTTTATCTCACAACACAAAACATTTTTAAGAGTCGTAATGATCGGAAGACGAATGCCACACATGACACCCTTGTTTTTCCTTGCGAAATACACATGACATTCGAGCCCCCCTCCAACTCACACATTAATGAAGTTCCAGGTATAGTTTTGGTCAAGTTTGAACCCATTTTTCCCTTTCAAAAGTCTTCATTACACGTGTAAAGATCAGTATCTATAGATTGTCTAAAATATACTCGTAAAGAAATATAAGAGCGTTACAGAGGGAGCACATTCATATATTCTGTTAGGTTTTATAGTTATATATCGTGGTAGAAAGTAATAGTCACATTTATGTGTGTGTTTTTTTGTTGCGGGGGCACATTTATGTTTTCTTGATTGTGTGGATGTGCAAAACACCATCTTTTTTGGAGACAAACACTTCAACTTCCCCTCTTTTTGGGGGATGGAAAGATATAAATGAGAAATTTTTGGCTGGCTATGACATGCCCGGATGAAGGCCCCGTTGGAGTTTTGCTCCTCAAAAGTCTTCACATGACCTCACGCCATGGACTCATGGTAGCTTGGTCCAGTCGATGCCGACGTTGCTCATGATGAATCATCTTTTTCTCCATGCCTAGATTCCAACACAAATTTCAGGTTCACCTCAACCTCTTCATTCCCCGGATTATGTGCGTGCGATCGAGACAGTTTTCACAAAAAAATGTTGCGATATTTCCGCGTATTGCCTTTGCATATATTCCAATCGAATTCATGGGTTCCTTTCCTATGATCCAAGGAGGCCCTCAGGGAAGTCCACCTGTCAGCGCGACGACGACGACGATGATGCGCCGGCTCTGTAGCAAGTGCCAGGTGTCCACGCTCCATGGCTTGCAAGGCGATGATGCAGGCAAGATAAATGAATAGCACAAGTCAACAGTAGCAGAGCTTTCTCCTCCCGTGGAGTGCATAGACAAACAATCTTTTGGAGATGGTGAGTTTTCAGATTAGACTTCGCGTGCAAGCGCCGGCGCTCCACACTTTTGTTTCAAGATCGCATCAGCTACTAAACGGCCGGTCAACAACTGACAAAAACACGCCGGCAGTTCACATTAACTAAATCCAAACGTACACTGCTTTTTTCCTTCAGTCAAATCACTAGTTTATCGGACGCCTGCAGTTCTCACCTCTTATCTGAGAATAGATATATACAAATAGCAAATCGTCACCAGGCAAGCACGGCGCACATACAATTATATCATATTCTGGTAAGAAAAATATCGTCGTAGCAGTTTTGCTGCTGCCATACCAGCGTGTCATGGGTTATACCGTGGCGCACGACGAGAGCGTGAGGGTAAGGGTTTATCATAGCAGGCTGGGCGTTTCACCAGTGGCCCTCTGTTTTCACAGGCATAGACCGTGTATCAGAATATGTACAATTATTGTGCTAAGAGATGTAAAAGTAAAAGGAAAGAAAAGAGTATTTCCGCCAGGCGCAATTCTAATTCCCTCAGGCTCCTGCGGAAGACGACGACAGCCTCCTCATAGCCTGCAAACAGGGCGAAACGGTCAAATGATTGCAACTCTCTTTTGTACAGGTAGTGCATCTTCATTAGAAGAAGATGCTGGTATTGCTTAGTCAAACGTGTCAAGAAACTAGCTACAGGCGAGGGTTCGGCGACTCAGCAAGATGACAAAGTTCGCAACGTAGCATCCTCCCGGACCTCTTCTCCCTTATCCATCAATCAACAAGACAAATGCTACTCTGCTCATTTTGCTTGTCAGTTTGTCTTTCTTTATTGTGCGCAGTGAACACAAATGGCGAAGATTCAGAAATTCAATCCCTTGCCACCTACGTACAAGCAATACCCTTTTGCTTATAAATGTCCTACCCTGGCTGCAACGGCAGGCTTAGTATAAAAGAACTTGCCGTCACTTGTTAATGTATTGAAAAGTGTGGGTGCTGCAACTTGGGCATTTAATTGGAAGGGTTGGGATATGCTAAATATGTGAGGACTGAAAAGCTTTCAGAACTTCAGTAATTGGGACTAGAAAATGATATGCAAGCAATCAGAAATCAGATAATGCAAGAATGTGCACCTCCTTCAGGAGAGCGGACATAGTCACAGAATATGAGAGGAGTCTCGTGTCTTAAGCATCAGGATTTACCTTAAGGAGGAAAACAACTTGCGAACTGCTTCAAAGATTTCATCTTCAGTTCCCGTTGCGTTTATCTGCATGGAGATCAACAAGTAGTCTTAGACACCCTAAAGGTCAAGTCTCGAAAATAAATAAGACATCCTACAGATCCTGAATATGAGTGATATACAGAATATGTTACTATGTTATATCCCTGATATGTACCCCTTCTGAAGAGATTAGCAATCTCTTCCAAGATGAGTGAATTACAGACACTCATCTAATATCAAATAAATAGGCAGATCTCTGATCTCACTCCCCTCCCCACAACATAGAAAAATGGTCTTACGGTTATATGAATTCAGAACACGAGGGAATCGCATCCTGGCTCTGCCTCTCTGTCCTATGATTCCCTGGAAACACTATCCTGCTATTTATACATTGGTAACCCATATGTTTGATGTTTCTGAAATATATATTGGCATTTGTAAAAGTTCAAGAAAATAAGCCAGGTATAGTTTAATGCTGCACATTAAGAAGCCTTTTAAATCAACTTCTAGAATAAAGGGTAGAGCTCTGTTTCCGTGTAAAGGAAATAGGAAAATGCACGTCAAAAAAGTAAAGGTACGGTTCATAAAAGAAAGGTACAAGAAGTGCTCCTGTCCAGGACACTCTGCGTAAAATAAATAGATTAATTACCTTGTGTGCCTTTCCCCTTGAAGAGTAGTACTCAACAACAGGAAGATTCAAACTCTCGAACACTTTTAGACGCTTCTTGATTGTCTCAATGTTATCATCAACTCGTCCCTAAGACGCATGCATGAGATAATCGAAAAAACAGAAACAAATAGAGAGATCAATTTAATGTGATATATTTTATTATTATTTTTAAAGGAAACTCCACTAGAGCATTAATCAACCTCCCATTATGATATGCACGAACTACACTGATGAGATTAGTGTTTCTTCTCTTCAATTTAAATGACATATGAAGAAGAAAATCATTTGTGGCAAACCACAAGGACTATCCTTTAGGAATGCTATATTTCATGTTAGTTAAGAGAGAGGGAGTAATAAGAAGATGATTGTCAAAGCCGAAAGTAACGGCTGGGAAATTAAGTCTTAGAAAAACACATATCGAGTAAGTTTCGAATAAGCATTGGGAAATGTACAATACTTATATAGTGTATATATATCTAGCACAATTTACTCCAGAGATAGTACAACGACCAACCTGGTTACGGCTTAGGAGACGTTTAACCATCTCATCCTCAGGACAGTCAAAGAAAAGCACAAGGTCTGGTTCAGTTCCAGTCTGAAATTTATTCATCAACATATCAGAACAGGACCATGCAATCTACATTTATCTGACTAGCAATTATTGAGCGGACAACAATGAAACATATCTTAGTTGGTATGCCAGTGTCTTCTTATTGCTTGACCACAGCACACACATTTTCTTTGATATAAATGCTTGTAGTAGTTGTTGAGTTGCAACCATACATCCACCATAGTGGGGCTAACATTAACTGTGGACTACTGCATAAAACCTAAAAGTGCATCACTCTAGAGCAGGACATAGTTATTGATTTGCTACTAAAAAAATACATGCATAAGAAACTGCTGATTGCATACTGTACACTGCCAGTTTTGGGCCAGCATATCGACGTAAAAAAAAAGTAAAGACAAGTGTGCATACACAAATGGTTACAGCCAAGAGCGCTACAAAACTTCAAGATTCGCCTGTTATTAGCCTTCCAAAAATTGAACAGAAACTGGTGAACATCATGGACTTATCCATCTCATCACATACCATTTCAATTAATAGAAAGTTCTGGACCAGTAATGCAAGCCAAACAGAGAACTTACTATTTTTTCAAAGGCGATTCTGTTTTCCTCACACCTTGGAAAACCATCGATAAGAACCCGTTTAGCAGTGCTTGATTCAATTGCTTTTCTGACCAGTTCAACGGTTATCTCTGATGGAACAATCCTCCCTTCCCTTATTATCTCCAGGATCCACTCCCTGGCAAATGCCATGAAACTGACAAATCAACTCACCGAACCATGCATGTGCGTGCGCGTCATTATAAGGTTATCAGAGGATTGAACGGAAAGAAGTATTACCCTTGATCAGTGCCAGCAGATATTTCATTCCGCAGAAGGTCACCAGCACTCACATGAGAAAATCCAAAATCCGAAGCGATCCTACTACATTGCGTTCCTTTCCCACTCCCAGGTCCCCCTACATGCAGGATCTTGATTAGTCGTGTGAACAACTGAAATTTGAGCGCCACAACACAATCCAACTTGAAACAGCACTGATTATCATTGATAGAAGTGATCCTCAATTTACTCTACACAGGTTATGCATGGAGTATGTAAATGTGAAACCAACCCTGCATTATTGGGGGAGTGCAGGTAGATTTTTTTTTTACCTAAGACGAAAGCGATTATAAATGTGAAACAGCACTGATTATCATTGAGGCAAGGGTTCCTCAGTTTACTCTACACAGATATGCATGGAATTTATAAATGCAAAACCAATGCTGCAAAATTACCTAAGACAAAAGCGATGAACGGCCTGTCACCATCGGTTCCCTACAGAATGA
data/test/data/BS00068396_51_contigs.fa.fai ADDED
@@ -0,0 +1,4 @@
1
+ 2AS_5222932 6364 46 6364 6365
2
+ 2BS_5245544 8836 6457 8836 8837
3
+ 2BS_5163353 11974 15341 11974 11975
4
+ 2DS_5334799 7226 27363 7226 7227
data/test/data/BS00068396_51_contigs.nhr ADDED
Binary file
data/test/data/BS00068396_51_contigs.nin ADDED
Binary file
data/test/data/BS00068396_51_contigs.nsq ADDED
Binary file
data/test/data/BS00068396_51_exonerate.tab ADDED
@@ -0,0 +1,6 @@
1
+ Command line: [exonerate --showalignment no --bestn 10 --showvulgar no --model affine:local --ryo RESULT:\t%S\t%pi\t%ql\t%tl\t%g\t%V\n /Users/ramirezr/Dropbox/code/bioruby-polyploid-tools/test/data/BS00068396_51.fa /Users/ramirezr/Dropbox/code/bioruby-polyploid-tools/test/data/BS00068396_51_contigs.fa]
2
+ Hostname: [n87398.nbi.ac.uk]
3
+ RESULT: BS00068396_51 0 101 + 2AS_5222932 3015 2914 - 501 99.01 101 6364 . M 101 101
4
+ RESULT: BS00068396_51 0 101 + 2DS_5334799 6812 6913 + 501 99.01 101 7226 . M 101 101
5
+ RESULT: BS00068396_51 0 101 + 2BS_5245544 4549 4651 + 462 96.04 101 8836 . M 69 69 G 0 1 M 32 32
6
+ RESULT: BS00068396_51 0 101 + 2BS_5163353 7425 7323 - 462 96.04 101 11974 . M 69 69 G 0 1 M 32 32
data/test/data/BS00068396_51_for_polymarker.txt ADDED
@@ -0,0 +1 @@
1
+ BS00068396_51,2AS,CGAAGCGATCCTACTACATTGCGTTCCTTTCCCACTCCCAGGTCCCCCTA[T/C]ATGCAGGATCTTGATTAGTCGTGTGAACAACTGAAATTTGAGCGCCACAA
data/test/data/BS00068396_51_genes.txt ADDED
@@ -0,0 +1,14 @@
1
+ 2AS_5222932
2
+ 2BS_5245544
3
+ 2BS_5163353
4
+ 2DS_5334799
5
+
6
+
7
+ for g in 2AS_5222932 2BS_5245544 2BS_5163353 2DS_5334799;
8
+
9
+
10
+ grep -A1 2AS_5222932 /Users/ramirezr/Documents/PHD/201305_Databases/iwgcs/2A*.fa >> contigs_2.fa
11
+ grep -A1 2BS_5245544 /Users/ramirezr/Documents/PHD/201305_Databases/iwgcs/2B*.fa >> contigs_2.fa
12
+ grep -A1 2BS_5163353 /Users/ramirezr/Documents/PHD/201305_Databases/iwgcs/2B*.fa >> contigs_2.fa
13
+ grep -A1 2DS_5334799 /Users/ramirezr/Documents/PHD/201305_Databases/iwgcs/2D*.fa >> contigs_2.fa
14
+ grep -A1 2DS_5334799 /Users/ramirezr/Documents/PHD/201305_Databases/iwgcs/2D*.fa >> contigs_2.fa
data/test/data/IWGSC_CSS_1AL_scaff_1455974.fa ADDED
@@ -0,0 +1,112 @@
1
+ >IWGSC_CSS_1AL_scaff_1455974
2
+ AGGCTTGGAGGCGTCGCTTATGTCGAACTCGATCGTCAGCACCCGCTGGAACTTGGGGAA
3
+ CGTCTTGAACGCCGCAAGCACCGGGGCGTCCTCTGACTGTATGAGCACGCGCTGCTTACA
4
+ GGTCTCCTTGTCGTACCCGGACTTGACAAGCGCTTTGGAGACCGCATCCACCACGTCAAG
5
+ GCTTCTGGCTATAAGGTACGTAGCATGCTGCACTCGGTAGGTACAAGACCTCTCTTGATC
6
+ AGTTGGACAGAATAACAACAATAGGTAACAGGAGCGAGCAAATGAATCATGTCAAAAGTA
7
+ GGATGCTATATATGCTGTCTACCTCTATGCCAATCAGTATACCAGTGATGTTGCTGGCTT
8
+ TTGCAAAATCAAGGAACTCAGCCAGTGTCATAAATTTGCCAGCGTTCTTCGCCGCAGGAT
9
+ TTCTCTCCAGGCGTGCGTCTGCGAATGGACCGACAAGGTTGGCTGCTCCGGTGAACAAAA
10
+ AACATGTGACATCAATGTTAGTGTATGCAAATCTTTGGCAGAACAAAATAAGGAGTATGT
11
+ CTTGCTTCGCACGTTTTAAGGTTTGGATCTCGCTCCATAAGAGATCAAACGAGAAAATGC
12
+ CCGACTTGTTCTGTATCTCATTGACAGTTGTCATTTTTTCCAAGAAAGTTGTGGCTGCTG
13
+ TCGTGCTGCTGTTGAGATCTGTAGAGCCCAGGCAGAAGGCGACCCCGTCTTTCGACATCC
14
+ GGACCCAGCAATCTATTATGTCCGCGCCATCTTTCACCGCTTGTTGGTAGGCAAGGTCCG
15
+ TGCTGTCTGAGAAGACGCCACTCGCACCATTGTGGGTTATGATCAGTGGCCTGACGTTTG
16
+ CTTCTACTCCTGCTTGAGTGGAGGGATCAGTATATTGTGTTACAAGATGATGATAAGTTA
17
+ GCAAAGCAACACCATGGATCAGGAGAAGATTGCCAGATTACCTGGAGGAGCTCCATCTTT
18
+ AGCAATAGGAAAAACGAATGCATTGCCCTTGGTATGTGCCATGCACACTGCAATTAAAGG
19
+ ATCCTCATGAAGATGTTGTCAACAGGAATCAAAAACGAAGAGCTAAATTGTACGGGTACG
20
+ TTCCTATCATGTATAAAGTAACATTTCAAAATTTTCATCAACATCCATTTCAGTTATAGC
21
+ TTCTTCCATTTCAGTTCTTACCTATGGCTCCTGATGCGGTAGGTGGATTGTCTGTTAAAA
22
+ CGCCGTCGACCGAGAAGTCTGAATTGTCTATGAACTGCAAGATTTCCGCGCTGGGATCAT
23
+ AGCTGTAGTTGTAACTCATACAGGGATCATCATTGGCAAATCCAGATGCGTACACTTCCA
24
+ GCCCTAGGGCATGTGCATCTTTGACCAAACTGGTAGACGGCTCCAAGTACATATCCTTAT
25
+ TCTGTGGCCAAATAAATTGCTTGGGAACAAGAATCCCCGATGCAAAGGCCTTGATAGATT
26
+ TCAGGTCTTTCAGAAGTTCTCCATATGTTCTCTTTGTCGTAGGCTCAACAAGGTCTTCAC
27
+ GGAGAAACCGGAAAATCAACTTTATATCACTTCTGACCTTTCCACTGAGACTTTTTAAGA
28
+ ATGCAAATTCTGGTGAGGAGACGCGAGTGACAGGAAATTCTTTTGGTAGTCCCAATATGT
29
+ AATCTTCGCCACTTAATCCGTGCTCCAGAAAAAACGAGTTGTACTAAAGAAAATATGAAC
30
+ TTCTATTAGATAGAGAACATGGTACAGTACAAAGAGATCCTTGGTGAATCTTTGAATGTT
31
+ AGTGAAACCACATCTACCTCTATGTTGACCCAAATTACATGAAGCTCGCCTTTTTGAGCC
32
+ AAGACGCTTTGAACCACATTGTCAAGCGACAACAGTTCCTGTGTTCTGTCAAATGTATTT
33
+ GAGCGAGACAAAACATTCTGAACCACTGAGGGATAATCAAACCACGTGACAAGTCAATAC
34
+ TTTGCAACAGGAAAAAAGAAGAAGAATTAAAAACAGAACCTAAATGGAAAATCAGAAATG
35
+ ATTTCAAAGGATCAACCATTTGGAAGAAAAAAACTTTCAAGGATCCATTTGAACCTTATT
36
+ CACTCCAAATATGGAAAAATATATGTGTTTTTACCACGTTTGCAATTGCTAACTTCATCA
37
+ TGGAGCATGGATAAAGTACTTTGATTTTACGGTTATGATTTTCAAGATAACCAAGATTAT
38
+ TTTTTCTGCTTACATAGGACACTATGTAGCTCCTCTGATTTGAAATCCAGAGAAAACCAT
39
+ CCTTGAACATCTCGTCCATTCACTTGATAAGTCGAGCCCCTGTCAGCGAACTTCTCAGCA
40
+ ATATTTGACGAATTGTCAAGTCTCAAGCTGCCATGGCAGAAGCCCACACCGTCGCTAGAG
41
+ AATTGCAGGTCGCAGAACAGAACCACCTCACACAAGCTACTTCCCATTGCCATGCTGTAT
42
+ GCAAGCTGGCTTGACTCAGGCACTACCCCAGACAAACCCCCACGAGCAATGACTAGAGGA
43
+ CGACGACCTGTAGGACAGTACTAGAAAGATTAGCAGCACGGCAGACAAACCATAATGTAG
44
+ GCTGAAAGAACATACTTTCTAGCTCACATTCTTCTATACAAAATACGCGCTTTTCCTTTG
45
+ TCGCATGCTAAACCaaaaaaaaaTCCCAATTCATAACTCAGCAATGGGCTAGATGCTTAC
46
+ CACTCAGAGTCAGCCATCCCGGTACTGGAGGATCCGAAGCAGCCTTGGTTCCATGAAGAA
47
+ GTAAGAGGATCAAGAAAACGAGAGGATATGTTGCTCCCATTCGGGTTAGAGACGAGCACC
48
+ CTGCTGCATCACACAAATTTCACAACAGATGCAACATACGTAAGTACCATGCGTTCACGA
49
+ GAGATGCAAGATAGACAAATCTGTGTCTCTTCACGAATCAATTCAGACAATAATTGCAGA
50
+ GGCGCAAGCAAAATAGTTGCAGAATTAAGGGAAAGGATGACAGCATCTCACCAGACCTTG
51
+ TGGGGAAATTCAGGCTTCAAATGTGCTAGCGCGACGGAGTGGGTTTGGGGAAAGGGATCT
52
+ AGCACCCACAAAACTAGAGGAACTAAATTGTGGATAGGCGGCAGGCAAGGCATGCATGCA
53
+ AGGTCTCTAAATCAGACTGTGGAGAGGAGGCAAAGGAGGAGGCAGAAGACGAGGCGAAAG
54
+ GCTTCTAAAAATAGGGGCCTCCCGGGCGATGGACAGGGTTTTGACATGGCATGGATGATC
55
+ GTCTCTCACTCACTTGTATGGCGAGTCTCTGCTCCACCTCAACAGCCAGAAAAACCTCCC
56
+ CTTTTATATAAAAATGTAAAAGGGAAAGAAACAGAGAGATGGTTTTCTTTTCGTGCCATT
57
+ GCTGGAGCCAGAGCAACTCCATCCAAGGACCTTAGACTAGATATCCTGGACGTGTTCGGT
58
+ GCCTTCTCGCCGCTCCCTTGCTGAACCTACATGCATATGTTCAGAATTCAGATAGATTAA
59
+ ATGGGACGGGACACAATGTATGTAAGATGAAAATTACACGATGCAGAGGTTGGTTTAAGA
60
+ AATCTAGCAAAATTTACAGAAATAACTGGTCATGAGAACATAAAAGGCCAGCATTGGATC
61
+ TGAGGCTTTGACCTCTGTATGCTTTCTCCCATTTCCCCAATTAGAGACGGCCGCGAAATC
62
+ TCACCACGAACGGAACGGACTACGGAGGCTGTGCCCGGGAGACGGGTCGAGCACGACGGA
63
+ GGGGAGGAATAACGACGAGGACATAGGGTTTTCTCCGACGGGAGTAATGGATGGACGGGG
64
+ AGGCGGCGGCGCTACGGAGCCCTGCATGCCCTAGGCGCCGAGAGGAGGAGCGCGGGGAGA
65
+ CGGCGGCCCTCGCCATCCGCCGCGTGCCGGTGGGAGCGGCGGGGATGGGTGGTGGAAGTG
66
+ GCGGGAGTTAGAGGGAGAAGACGGCACGGCGACATTGGATTCCGGCCGCCGGCAGACGGG
67
+ ACGAAGGCGAGGTTCTTCTCATCCCATCGTGTAGATAAGGTTAGCTTAGTCCCCATCGGC
68
+ GTTAATTGGAAGGGATCGACGTAATCCGCCACCTCCTCTTCACATTGGTGTTGCTTCGGG
69
+ GCGGCGCTGGGATGGGAGTGGCATGCCCTCCCGTCAATCTGCGGATCCGGTGGTTTGTGT
70
+ GCTCCTGGGATGGTCGACGTCTTGGTGGTGACACCGTGCTCCAGTTCTAGGCCCTCTCAG
71
+ GCGGCTTGGTGGTTGCTCTGGTCTACAATTCGTCGATGGCAGCAGCGGATCGGGCGCACC
72
+ CGGTGAAGCTCGATTTTGCTCCTCATGAATCCCACGAGTTTGTGTTCTCTGACTTGTTTG
73
+ GATATTCGTGCGATATCGACTTCCACAACTTCAGCTCATGCTCGGTCACGCTGGTCCTTC
74
+ GAGACCGTAGCACGGAGACTTCCAATCCGCGTTTACAAACAAAGTTTGGCCAGCCGAGGC
75
+ TCGGGAGCAGCAATGGTGGCAGCGACGGTGCACTTGTGGCTCGTGATGGAACTTCAAGCT
76
+ GATGTGCGTCTCAGGGACATCCTTGTAATTTTTTTCTTTGTGTGAGGTGCTTTGTGTTGA
77
+ TGTTTATCCTCTATAACAAATCTGATGGCTTATTTTTGaaaaaaaaGGAGGAAGCATTTT
78
+ GTTTGCAAGTACGGGCGGATAACGAGCATGTTTGGCTCCTTAAGGTTTAGAGGCTCGCTA
79
+ TCCTAACAAGATAAAATTTAAGCTCAGTTTGGATCGTTACATCCGCaaaaaaaaaGAAGA
80
+ AGTTTAGATCGTTAAAAAGCTCATGAGTGCTTGCAAACGCTAGTTACCGCTTCTCATACG
81
+ TCCAACACTATAGTGTCATTGTGCCATGAGTGTGTTTCATGATGACAACTCttttttcct
82
+ tttttGCAGGGTTTCATAATGACAACTCGCCTAATCAACTTTGCCACTATTCAACTCCGA
83
+ GACACACCAACAGAAGATTTGTGTTCTGTGATGCGGGCAAAGCCAATTGTGATTAAAAGG
84
+ TCTACACGCGGGCTAGTGAAAtactcccttcgtcttaaaataagtgtctcgaatttagta
85
+ caattatattaaatccgacctagaaaaatatgttgagaaggggagagtaCAAATGAGTTT
86
+ AAGGAGCTACTCATGAGCTCGATTGATAGGAACTTTAGCTAAGCTAAGAACAAATACGGA
87
+ CTTGATAAGCAGAAACGAGACGACACATGTTTGTAAACATCTACGTGCAACAACTCGTTA
88
+ CTTATTTTCAAGGGGGGCCCCGGGCTTCGAGTTCCTTATCAAGCACATGCAAGCTGATGG
89
+ GATGAACGTAAATTTCAGCGACCGACAACAGTAAAAAGGAGCTCAAAACCAAACCAATAT
90
+ ACTATATCATCACATTTATCTACTGCACTGCACTTAGTGTATGCACCACTCTATTGATCT
91
+ TTGCAACAATATTGGATGCGTGTACTCTACTTCCTACCGTAATTAATCTCCAGAGGTAGG
92
+ TATGATCCCCTTTTCAGGTCTGGTGTGTTCTGCTTTGAATTTGCTGCAGCCTCTAGCTCT
93
+ GCTATACATATGGGCTCTTGAATTTTGTGGTAGATGAACTAGCTACTAGCCAGATGACCT
94
+ TGCTAGTACTGTAGATGTAGCAGCAGAGGTGATCAAGTACGATTTTCTTATTTGTCTCCT
95
+ GTTTCACCCGATCTGGGGACTGGGGTACTATCTTTAATGCTGTGCCTCACGTTTAGTGGT
96
+ AGCTTGAACAAAGGTATTTTTGCATGATTTGAAGTTCATCCCAAAAGGCCTCCTCAAAAC
97
+ CCCTTCTTGTATTGGGACATTCAGACTTAATTTCAAGACAATATGAATGCATATTTTCTC
98
+ AGTGTTTCCTAGCTAGGATTGAGGGATATTTGGTGAAAAGTCTCATTGGCCTGGCTCGGA
99
+ TAATGGGATTTCATCTTTAACCCTTTCTTTCATTGCACTCTGGAGATTTGCCCTCTCCAA
100
+ TCTAAGTAACATGTACTTGGGACCTGAACAGAGCCTCTTCCCCAAGAAAAGTCTAGAGTA
101
+ CCCTtgcctcgtctccgatggccttaggaccatggcggcgcggtggatctcggtccttgt
102
+ cggcaggagggatttgttttcagttgttttttcgcgttttgttggggtttgtgtcctgct
103
+ taggaagacgagacggcggcggctccctgaagatggaataaggttctccccgtctagccc
104
+ ccgtcccgatggtgtgtctagtatcatcggtgggcgtgtggagatgcgcctccggcggat
105
+ ctgtccttggtggatttgctcggatctgctcgtagttcgtctacgttcatgtgttttcag
106
+ gttggatccttctgatctacgctactcttcatcggcggcgattgttgtgctgctgcgctg
107
+ gtcctatggggtcttagcacgatgacttcccggctatctactgcaacaagttttgcccga
108
+ ctccgactagagaggggcgatgacggcggcgcgccttcggctcgcttcagtgcttgtagt
109
+ cgtcgctaggtgttctacgaatctggatgtaatttttattatttttggtattcgttgcac
110
+ tgccatgattgaagatgaatagattggaagttttttcgcaaaaaaaTAATAATCTAAGTG
111
+ ACCTATCTTCGCACCCATACCCCCTATAAACCTCTATTGGAGTCCCTTTTCGGCTTTGAT
112
+ ATAAGTGACGATGTGCTATGCTCGTTTGTGAGAGGCGAGTGTGGTCAGTTGCGACCC