MARQ 0.0.1
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- data/LICENSE +20 -0
- data/R/CustomDS.R +80 -0
- data/R/GEO.R +249 -0
- data/R/MA.R +359 -0
- data/README.rdoc +29 -0
- data/bin/marq_config +170 -0
- data/install_scripts/CustomDS/Rakefile +223 -0
- data/install_scripts/GEO/Rakefile +258 -0
- data/install_scripts/GEO/platforms/GPL100.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1002.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1007.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL101.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1010.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1073.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1074.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL1090.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1104.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL118.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1205.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL1211.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1213.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1219.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL1223.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1226.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1229.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1230.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1231.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1232.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1260.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL1261.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL127.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL128.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1290.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1292.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1293.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1294.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1295.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL13.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL1310.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1313.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1323.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1331.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1352.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL1355.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL1382.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1387.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1397.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL14.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1412.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1415.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1420.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL144.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1449.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1458.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1523.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1524.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1528.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL153.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1530.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1535.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL155.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL163.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL168.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL169.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1704.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL1708.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1739.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1740.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL1749.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL177.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1790.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1792.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL181.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1818.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1820.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL1823.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1826.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL183.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1831.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1833.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1872.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL1911.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1914.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL1928.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1942.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1945.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL1964.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL198.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL1981.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL200.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL2006.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL201.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL2011.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL2026.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL205.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL207.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL2136.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL220.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL226.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL24.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL246.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL247.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL2507.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL2529.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL2531.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL254.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL2569.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL257.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL2598.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL260.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL2614.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL2622.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL2623.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL2660.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL2670.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL2677.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL2700.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL2721.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL2727.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL273.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL2763.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL2824.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL284.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL287.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL2872.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL288.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL2883.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL289.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL2895.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL2897.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL2902.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL2987.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL2995.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL3039.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL3050.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL3084.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL3113.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL317.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL319.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL32.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL3222.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL3295.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL3305.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL3306.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL3307.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL333.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL3341.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL3349.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL339.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL340.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL3408.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL341.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL3415.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL3423.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL3440.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL3457.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL3504.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL3506.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL355.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL3558.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL3607.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL368.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL3695.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL371.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL3834.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL4006.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL4055.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL409.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL4191.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL4226.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL4371.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL4567.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL4685.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL483.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL49.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL50.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL500.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL507.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL51.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL513.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL519.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL52.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL529.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL53.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL5356.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL538.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL54.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL543.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL544.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL545.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL546.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL547.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL549.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL550.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL56.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL560.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL564.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL57.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL570.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL571.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL576.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL58.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL5823.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL59.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL5915.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL5947.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL61.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL64.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL6419.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL6424.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL65.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL6574.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL6649.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL67.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL6720.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL7054.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL737.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL738.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL74.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL75.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL76.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL764.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL772.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL782.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL783.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL784.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL80.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL81.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL82.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL83.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL85.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL86.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL87.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL870.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL875.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL884.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL887.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL89.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL890.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL891.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL90.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL91.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL92.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL920.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL922.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL924.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL93.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL96.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL968.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL97.yaml +4 -0
- data/install_scripts/GEO/platforms/GPL98.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL981.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL99.yaml +7 -0
- data/install_scripts/GEO/platforms/GPL999.yaml +7 -0
- data/install_scripts/GEO/series/GSE10018.yaml +61 -0
- data/install_scripts/GEO/series/GSE1002.yaml +135 -0
- data/install_scripts/GEO/series/GSE10066.yaml +31 -0
- data/install_scripts/GEO/series/GSE10073.yaml +19 -0
- data/install_scripts/GEO/series/GSE10091.yaml +15 -0
- data/install_scripts/GEO/series/GSE101.yaml +17 -0
- data/install_scripts/GEO/series/GSE10100.yaml +15 -0
- data/install_scripts/GEO/series/GSE10101.yaml +15 -0
- data/install_scripts/GEO/series/GSE10102.yaml +15 -0
- data/install_scripts/GEO/series/GSE10267.yaml +37 -0
- data/install_scripts/GEO/series/GSE10268.yaml +115 -0
- data/install_scripts/GEO/series/GSE10279.yaml +23 -0
- data/install_scripts/GEO/series/GSE103.yaml +19 -0
- data/install_scripts/GEO/series/GSE104.yaml +19 -0
- data/install_scripts/GEO/series/GSE10514.yaml +27 -0
- data/install_scripts/GEO/series/GSE10521.yaml +56 -0
- data/install_scripts/GEO/series/GSE10554.yaml +19 -0
- data/install_scripts/GEO/series/GSE1073.yaml +127 -0
- data/install_scripts/GEO/series/GSE10860.yaml +25 -0
- data/install_scripts/GEO/series/GSE10930.yaml +15 -0
- data/install_scripts/GEO/series/GSE10933.yaml +15 -0
- data/install_scripts/GEO/series/GSE10944.yaml +21 -0
- data/install_scripts/GEO/series/GSE10947.yaml +21 -0
- data/install_scripts/GEO/series/GSE10948.yaml +21 -0
- data/install_scripts/GEO/series/GSE11061.yaml +19 -0
- data/install_scripts/GEO/series/GSE11071.yaml +67 -0
- data/install_scripts/GEO/series/GSE11111.yaml +25 -0
- data/install_scripts/GEO/series/GSE11236.yaml +25 -0
- data/install_scripts/GEO/series/GSE11282.yaml +19 -0
- data/install_scripts/GEO/series/GSE11377.yaml +19 -0
- data/install_scripts/GEO/series/GSE11380.yaml +13 -0
- data/install_scripts/GEO/series/GSE11397.yaml +55 -0
- data/install_scripts/GEO/series/GSE11412.yaml +11 -0
- data/install_scripts/GEO/series/GSE11452.yaml +354 -0
- data/install_scripts/GEO/series/GSE11620.yaml +33 -0
- data/install_scripts/GEO/series/GSE11621.yaml +31 -0
- data/install_scripts/GEO/series/GSE11651.yaml +94 -0
- data/install_scripts/GEO/series/GSE11754.yaml +29 -0
- data/install_scripts/GEO/series/GSE11799.yaml +59 -0
- data/install_scripts/GEO/series/GSE11856.yaml +11 -0
- data/install_scripts/GEO/series/GSE11878.yaml +19 -0
- data/install_scripts/GEO/series/GSE11983.yaml +15 -0
- data/install_scripts/GEO/series/GSE12004.yaml +41 -0
- data/install_scripts/GEO/series/GSE12055.yaml +109 -0
- data/install_scripts/GEO/series/GSE12061.yaml +13 -0
- data/install_scripts/GEO/series/GSE12104.yaml +10 -0
- data/install_scripts/GEO/series/GSE12138.yaml +13 -0
- data/install_scripts/GEO/series/GSE12150.yaml +32 -0
- data/install_scripts/GEO/series/GSE12684.yaml +47 -0
- data/install_scripts/GEO/series/GSE12685.yaml +34 -0
- data/install_scripts/GEO/series/GSE1365.yaml +14 -0
- data/install_scripts/GEO/series/GSE1404.yaml +596 -0
- data/install_scripts/GEO/series/GSE1492.yaml +15 -0
- data/install_scripts/GEO/series/GSE15222.yaml +731 -0
- data/install_scripts/GEO/series/GSE1553.yaml +23 -0
- data/install_scripts/GEO/series/GSE1617.yaml +39 -0
- data/install_scripts/GEO/series/GSE1688.yaml +36 -0
- data/install_scripts/GEO/series/GSE1693.yaml +60 -0
- data/install_scripts/GEO/series/GSE1752.yaml +32 -0
- data/install_scripts/GEO/series/GSE1753.yaml +16 -0
- data/install_scripts/GEO/series/GSE1754.yaml +19 -0
- data/install_scripts/GEO/series/GSE1758.yaml +15 -0
- data/install_scripts/GEO/series/GSE1759.yaml +18 -0
- data/install_scripts/GEO/series/GSE1760.yaml +18 -0
- data/install_scripts/GEO/series/GSE1763.yaml +19 -0
- data/install_scripts/GEO/series/GSE1915.yaml +39 -0
- data/install_scripts/GEO/series/GSE1927.yaml +14 -0
- data/install_scripts/GEO/series/GSE1941.yaml +23 -0
- data/install_scripts/GEO/series/GSE1942.yaml +31 -0
- data/install_scripts/GEO/series/GSE1944.yaml +58 -0
- data/install_scripts/GEO/series/GSE1975.yaml +65 -0
- data/install_scripts/GEO/series/GSE20.yaml +24 -0
- data/install_scripts/GEO/series/GSE2107.yaml +14 -0
- data/install_scripts/GEO/series/GSE2159.yaml +31 -0
- data/install_scripts/GEO/series/GSE2246.yaml +157 -0
- data/install_scripts/GEO/series/GSE2263.yaml +57 -0
- data/install_scripts/GEO/series/GSE2267.yaml +155 -0
- data/install_scripts/GEO/series/GSE23.yaml +58 -0
- data/install_scripts/GEO/series/GSE2329.yaml +43 -0
- data/install_scripts/GEO/series/GSE2330.yaml +55 -0
- data/install_scripts/GEO/series/GSE2349.yaml +19 -0
- data/install_scripts/GEO/series/GSE2412.yaml +58 -0
- data/install_scripts/GEO/series/GSE2419.yaml +27 -0
- data/install_scripts/GEO/series/GSE2420.yaml +29 -0
- data/install_scripts/GEO/series/GSE2434.yaml +37 -0
- data/install_scripts/GEO/series/GSE2526.yaml +23 -0
- data/install_scripts/GEO/series/GSE2579.yaml +19 -0
- data/install_scripts/GEO/series/GSE2806.yaml +11 -0
- data/install_scripts/GEO/series/GSE2831.yaml +35 -0
- data/install_scripts/GEO/series/GSE2832.yaml +17 -0
- data/install_scripts/GEO/series/GSE29.yaml +16 -0
- data/install_scripts/GEO/series/GSE3006.yaml +35 -0
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//If overflow is hidden, the element might have extra content, but the user wants to hide it
|
49
|
+
if ($(el).css('overflow') == 'hidden') { return false; }
|
50
|
+
|
51
|
+
var scroll = (a && a == 'left') ? 'scrollLeft' : 'scrollTop',
|
52
|
+
has = false;
|
53
|
+
|
54
|
+
if (el[scroll] > 0) { return true; }
|
55
|
+
|
56
|
+
// TODO: determine which cases actually cause this to happen
|
57
|
+
// if the element doesn't have the scroll set, see if it's possible to
|
58
|
+
// set the scroll
|
59
|
+
el[scroll] = 1;
|
60
|
+
has = (el[scroll] > 0);
|
61
|
+
el[scroll] = 0;
|
62
|
+
return has;
|
63
|
+
},
|
64
|
+
|
65
|
+
isOverAxis: function(x, reference, size) {
|
66
|
+
//Determines when x coordinate is over "b" element axis
|
67
|
+
return (x > reference) && (x < (reference + size));
|
68
|
+
},
|
69
|
+
|
70
|
+
isOver: function(y, x, top, left, height, width) {
|
71
|
+
//Determines when x, y coordinates is over "b" element
|
72
|
+
return $.ui.isOverAxis(y, top, height) && $.ui.isOverAxis(x, left, width);
|
73
|
+
},
|
74
|
+
|
75
|
+
keyCode: {
|
76
|
+
BACKSPACE: 8,
|
77
|
+
CAPS_LOCK: 20,
|
78
|
+
COMMA: 188,
|
79
|
+
CONTROL: 17,
|
80
|
+
DELETE: 46,
|
81
|
+
DOWN: 40,
|
82
|
+
END: 35,
|
83
|
+
ENTER: 13,
|
84
|
+
ESCAPE: 27,
|
85
|
+
HOME: 36,
|
86
|
+
INSERT: 45,
|
87
|
+
LEFT: 37,
|
88
|
+
NUMPAD_ADD: 107,
|
89
|
+
NUMPAD_DECIMAL: 110,
|
90
|
+
NUMPAD_DIVIDE: 111,
|
91
|
+
NUMPAD_ENTER: 108,
|
92
|
+
NUMPAD_MULTIPLY: 106,
|
93
|
+
NUMPAD_SUBTRACT: 109,
|
94
|
+
PAGE_DOWN: 34,
|
95
|
+
PAGE_UP: 33,
|
96
|
+
PERIOD: 190,
|
97
|
+
RIGHT: 39,
|
98
|
+
SHIFT: 16,
|
99
|
+
SPACE: 32,
|
100
|
+
TAB: 9,
|
101
|
+
UP: 38
|
102
|
+
}
|
103
|
+
};
|
104
|
+
|
105
|
+
// WAI-ARIA normalization
|
106
|
+
if (isFF2) {
|
107
|
+
var attr = $.attr,
|
108
|
+
removeAttr = $.fn.removeAttr,
|
109
|
+
ariaNS = "http://www.w3.org/2005/07/aaa",
|
110
|
+
ariaState = /^aria-/,
|
111
|
+
ariaRole = /^wairole:/;
|
112
|
+
|
113
|
+
$.attr = function(elem, name, value) {
|
114
|
+
var set = value !== undefined;
|
115
|
+
|
116
|
+
return (name == 'role'
|
117
|
+
? (set
|
118
|
+
? attr.call(this, elem, name, "wairole:" + value)
|
119
|
+
: (attr.apply(this, arguments) || "").replace(ariaRole, ""))
|
120
|
+
: (ariaState.test(name)
|
121
|
+
? (set
|
122
|
+
? elem.setAttributeNS(ariaNS,
|
123
|
+
name.replace(ariaState, "aaa:"), value)
|
124
|
+
: attr.call(this, elem, name.replace(ariaState, "aaa:")))
|
125
|
+
: attr.apply(this, arguments)));
|
126
|
+
};
|
127
|
+
|
128
|
+
$.fn.removeAttr = function(name) {
|
129
|
+
return (ariaState.test(name)
|
130
|
+
? this.each(function() {
|
131
|
+
this.removeAttributeNS(ariaNS, name.replace(ariaState, ""));
|
132
|
+
}) : removeAttr.call(this, name));
|
133
|
+
};
|
134
|
+
}
|
135
|
+
|
136
|
+
//jQuery plugins
|
137
|
+
$.fn.extend({
|
138
|
+
remove: function() {
|
139
|
+
// Safari has a native remove event which actually removes DOM elements,
|
140
|
+
// so we have to use triggerHandler instead of trigger (#3037).
|
141
|
+
$("*", this).add(this).each(function() {
|
142
|
+
$(this).triggerHandler("remove");
|
143
|
+
});
|
144
|
+
return _remove.apply(this, arguments );
|
145
|
+
},
|
146
|
+
|
147
|
+
enableSelection: function() {
|
148
|
+
return this
|
149
|
+
.attr('unselectable', 'off')
|
150
|
+
.css('MozUserSelect', '')
|
151
|
+
.unbind('selectstart.ui');
|
152
|
+
},
|
153
|
+
|
154
|
+
disableSelection: function() {
|
155
|
+
return this
|
156
|
+
.attr('unselectable', 'on')
|
157
|
+
.css('MozUserSelect', 'none')
|
158
|
+
.bind('selectstart.ui', function() { return false; });
|
159
|
+
},
|
160
|
+
|
161
|
+
scrollParent: function() {
|
162
|
+
var scrollParent;
|
163
|
+
if(($.browser.msie && (/(static|relative)/).test(this.css('position'))) || (/absolute/).test(this.css('position'))) {
|
164
|
+
scrollParent = this.parents().filter(function() {
|
165
|
+
return (/(relative|absolute|fixed)/).test($.curCSS(this,'position',1)) && (/(auto|scroll)/).test($.curCSS(this,'overflow',1)+$.curCSS(this,'overflow-y',1)+$.curCSS(this,'overflow-x',1));
|
166
|
+
}).eq(0);
|
167
|
+
} else {
|
168
|
+
scrollParent = this.parents().filter(function() {
|
169
|
+
return (/(auto|scroll)/).test($.curCSS(this,'overflow',1)+$.curCSS(this,'overflow-y',1)+$.curCSS(this,'overflow-x',1));
|
170
|
+
}).eq(0);
|
171
|
+
}
|
172
|
+
|
173
|
+
return (/fixed/).test(this.css('position')) || !scrollParent.length ? $(document) : scrollParent;
|
174
|
+
}
|
175
|
+
});
|
176
|
+
|
177
|
+
|
178
|
+
//Additional selectors
|
179
|
+
$.extend($.expr[':'], {
|
180
|
+
data: function(elem, i, match) {
|
181
|
+
return !!$.data(elem, match[3]);
|
182
|
+
},
|
183
|
+
|
184
|
+
focusable: function(element) {
|
185
|
+
var nodeName = element.nodeName.toLowerCase(),
|
186
|
+
tabIndex = $.attr(element, 'tabindex');
|
187
|
+
return (/input|select|textarea|button|object/.test(nodeName)
|
188
|
+
? !element.disabled
|
189
|
+
: 'a' == nodeName || 'area' == nodeName
|
190
|
+
? element.href || !isNaN(tabIndex)
|
191
|
+
: !isNaN(tabIndex))
|
192
|
+
// the element and all of its ancestors must be visible
|
193
|
+
// the browser may report that the area is hidden
|
194
|
+
&& !$(element)['area' == nodeName ? 'parents' : 'closest'](':hidden').length;
|
195
|
+
},
|
196
|
+
|
197
|
+
tabbable: function(element) {
|
198
|
+
var tabIndex = $.attr(element, 'tabindex');
|
199
|
+
return (isNaN(tabIndex) || tabIndex >= 0) && $(element).is(':focusable');
|
200
|
+
}
|
201
|
+
});
|
202
|
+
|
203
|
+
|
204
|
+
// $.widget is a factory to create jQuery plugins
|
205
|
+
// taking some boilerplate code out of the plugin code
|
206
|
+
function getter(namespace, plugin, method, args) {
|
207
|
+
function getMethods(type) {
|
208
|
+
var methods = $[namespace][plugin][type] || [];
|
209
|
+
return (typeof methods == 'string' ? methods.split(/,?\s+/) : methods);
|
210
|
+
}
|
211
|
+
|
212
|
+
var methods = getMethods('getter');
|
213
|
+
if (args.length == 1 && typeof args[0] == 'string') {
|
214
|
+
methods = methods.concat(getMethods('getterSetter'));
|
215
|
+
}
|
216
|
+
return ($.inArray(method, methods) != -1);
|
217
|
+
}
|
218
|
+
|
219
|
+
$.widget = function(name, prototype) {
|
220
|
+
var namespace = name.split(".")[0];
|
221
|
+
name = name.split(".")[1];
|
222
|
+
|
223
|
+
// create plugin method
|
224
|
+
$.fn[name] = function(options) {
|
225
|
+
var isMethodCall = (typeof options == 'string'),
|
226
|
+
args = Array.prototype.slice.call(arguments, 1);
|
227
|
+
|
228
|
+
// prevent calls to internal methods
|
229
|
+
if (isMethodCall && options.substring(0, 1) == '_') {
|
230
|
+
return this;
|
231
|
+
}
|
232
|
+
|
233
|
+
// handle getter methods
|
234
|
+
if (isMethodCall && getter(namespace, name, options, args)) {
|
235
|
+
var instance = $.data(this[0], name);
|
236
|
+
return (instance ? instance[options].apply(instance, args)
|
237
|
+
: undefined);
|
238
|
+
}
|
239
|
+
|
240
|
+
// handle initialization and non-getter methods
|
241
|
+
return this.each(function() {
|
242
|
+
var instance = $.data(this, name);
|
243
|
+
|
244
|
+
// constructor
|
245
|
+
(!instance && !isMethodCall &&
|
246
|
+
$.data(this, name, new $[namespace][name](this, options))._init());
|
247
|
+
|
248
|
+
// method call
|
249
|
+
(instance && isMethodCall && $.isFunction(instance[options]) &&
|
250
|
+
instance[options].apply(instance, args));
|
251
|
+
});
|
252
|
+
};
|
253
|
+
|
254
|
+
// create widget constructor
|
255
|
+
$[namespace] = $[namespace] || {};
|
256
|
+
$[namespace][name] = function(element, options) {
|
257
|
+
var self = this;
|
258
|
+
|
259
|
+
this.namespace = namespace;
|
260
|
+
this.widgetName = name;
|
261
|
+
this.widgetEventPrefix = $[namespace][name].eventPrefix || name;
|
262
|
+
this.widgetBaseClass = namespace + '-' + name;
|
263
|
+
|
264
|
+
this.options = $.extend({},
|
265
|
+
$.widget.defaults,
|
266
|
+
$[namespace][name].defaults,
|
267
|
+
$.metadata && $.metadata.get(element)[name],
|
268
|
+
options);
|
269
|
+
|
270
|
+
this.element = $(element)
|
271
|
+
.bind('setData.' + name, function(event, key, value) {
|
272
|
+
if (event.target == element) {
|
273
|
+
return self._setData(key, value);
|
274
|
+
}
|
275
|
+
})
|
276
|
+
.bind('getData.' + name, function(event, key) {
|
277
|
+
if (event.target == element) {
|
278
|
+
return self._getData(key);
|
279
|
+
}
|
280
|
+
})
|
281
|
+
.bind('remove', function() {
|
282
|
+
return self.destroy();
|
283
|
+
});
|
284
|
+
};
|
285
|
+
|
286
|
+
// add widget prototype
|
287
|
+
$[namespace][name].prototype = $.extend({}, $.widget.prototype, prototype);
|
288
|
+
|
289
|
+
// TODO: merge getter and getterSetter properties from widget prototype
|
290
|
+
// and plugin prototype
|
291
|
+
$[namespace][name].getterSetter = 'option';
|
292
|
+
};
|
293
|
+
|
294
|
+
$.widget.prototype = {
|
295
|
+
_init: function() {},
|
296
|
+
destroy: function() {
|
297
|
+
this.element.removeData(this.widgetName)
|
298
|
+
.removeClass(this.widgetBaseClass + '-disabled' + ' ' + this.namespace + '-state-disabled')
|
299
|
+
.removeAttr('aria-disabled');
|
300
|
+
},
|
301
|
+
|
302
|
+
option: function(key, value) {
|
303
|
+
var options = key,
|
304
|
+
self = this;
|
305
|
+
|
306
|
+
if (typeof key == "string") {
|
307
|
+
if (value === undefined) {
|
308
|
+
return this._getData(key);
|
309
|
+
}
|
310
|
+
options = {};
|
311
|
+
options[key] = value;
|
312
|
+
}
|
313
|
+
|
314
|
+
$.each(options, function(key, value) {
|
315
|
+
self._setData(key, value);
|
316
|
+
});
|
317
|
+
},
|
318
|
+
_getData: function(key) {
|
319
|
+
return this.options[key];
|
320
|
+
},
|
321
|
+
_setData: function(key, value) {
|
322
|
+
this.options[key] = value;
|
323
|
+
|
324
|
+
if (key == 'disabled') {
|
325
|
+
this.element
|
326
|
+
[value ? 'addClass' : 'removeClass'](
|
327
|
+
this.widgetBaseClass + '-disabled' + ' ' +
|
328
|
+
this.namespace + '-state-disabled')
|
329
|
+
.attr("aria-disabled", value);
|
330
|
+
}
|
331
|
+
},
|
332
|
+
|
333
|
+
enable: function() {
|
334
|
+
this._setData('disabled', false);
|
335
|
+
},
|
336
|
+
disable: function() {
|
337
|
+
this._setData('disabled', true);
|
338
|
+
},
|
339
|
+
|
340
|
+
_trigger: function(type, event, data) {
|
341
|
+
var callback = this.options[type],
|
342
|
+
eventName = (type == this.widgetEventPrefix
|
343
|
+
? type : this.widgetEventPrefix + type);
|
344
|
+
|
345
|
+
event = $.Event(event);
|
346
|
+
event.type = eventName;
|
347
|
+
|
348
|
+
// copy original event properties over to the new event
|
349
|
+
// this would happen if we could call $.event.fix instead of $.Event
|
350
|
+
// but we don't have a way to force an event to be fixed multiple times
|
351
|
+
if (event.originalEvent) {
|
352
|
+
for (var i = $.event.props.length, prop; i;) {
|
353
|
+
prop = $.event.props[--i];
|
354
|
+
event[prop] = event.originalEvent[prop];
|
355
|
+
}
|
356
|
+
}
|
357
|
+
|
358
|
+
this.element.trigger(event, data);
|
359
|
+
|
360
|
+
return !($.isFunction(callback) && callback.call(this.element[0], event, data) === false
|
361
|
+
|| event.isDefaultPrevented());
|
362
|
+
}
|
363
|
+
};
|
364
|
+
|
365
|
+
$.widget.defaults = {
|
366
|
+
disabled: false
|
367
|
+
};
|
368
|
+
|
369
|
+
|
370
|
+
/** Mouse Interaction Plugin **/
|
371
|
+
|
372
|
+
$.ui.mouse = {
|
373
|
+
_mouseInit: function() {
|
374
|
+
var self = this;
|
375
|
+
|
376
|
+
this.element
|
377
|
+
.bind('mousedown.'+this.widgetName, function(event) {
|
378
|
+
return self._mouseDown(event);
|
379
|
+
})
|
380
|
+
.bind('click.'+this.widgetName, function(event) {
|
381
|
+
if(self._preventClickEvent) {
|
382
|
+
self._preventClickEvent = false;
|
383
|
+
event.stopImmediatePropagation();
|
384
|
+
return false;
|
385
|
+
}
|
386
|
+
});
|
387
|
+
|
388
|
+
// Prevent text selection in IE
|
389
|
+
if ($.browser.msie) {
|
390
|
+
this._mouseUnselectable = this.element.attr('unselectable');
|
391
|
+
this.element.attr('unselectable', 'on');
|
392
|
+
}
|
393
|
+
|
394
|
+
this.started = false;
|
395
|
+
},
|
396
|
+
|
397
|
+
// TODO: make sure destroying one instance of mouse doesn't mess with
|
398
|
+
// other instances of mouse
|
399
|
+
_mouseDestroy: function() {
|
400
|
+
this.element.unbind('.'+this.widgetName);
|
401
|
+
|
402
|
+
// Restore text selection in IE
|
403
|
+
($.browser.msie
|
404
|
+
&& this.element.attr('unselectable', this._mouseUnselectable));
|
405
|
+
},
|
406
|
+
|
407
|
+
_mouseDown: function(event) {
|
408
|
+
// don't let more than one widget handle mouseStart
|
409
|
+
// TODO: figure out why we have to use originalEvent
|
410
|
+
event.originalEvent = event.originalEvent || {};
|
411
|
+
if (event.originalEvent.mouseHandled) { return; }
|
412
|
+
|
413
|
+
// we may have missed mouseup (out of window)
|
414
|
+
(this._mouseStarted && this._mouseUp(event));
|
415
|
+
|
416
|
+
this._mouseDownEvent = event;
|
417
|
+
|
418
|
+
var self = this,
|
419
|
+
btnIsLeft = (event.which == 1),
|
420
|
+
elIsCancel = (typeof this.options.cancel == "string" ? $(event.target).parents().add(event.target).filter(this.options.cancel).length : false);
|
421
|
+
if (!btnIsLeft || elIsCancel || !this._mouseCapture(event)) {
|
422
|
+
return true;
|
423
|
+
}
|
424
|
+
|
425
|
+
this.mouseDelayMet = !this.options.delay;
|
426
|
+
if (!this.mouseDelayMet) {
|
427
|
+
this._mouseDelayTimer = setTimeout(function() {
|
428
|
+
self.mouseDelayMet = true;
|
429
|
+
}, this.options.delay);
|
430
|
+
}
|
431
|
+
|
432
|
+
if (this._mouseDistanceMet(event) && this._mouseDelayMet(event)) {
|
433
|
+
this._mouseStarted = (this._mouseStart(event) !== false);
|
434
|
+
if (!this._mouseStarted) {
|
435
|
+
event.preventDefault();
|
436
|
+
return true;
|
437
|
+
}
|
438
|
+
}
|
439
|
+
|
440
|
+
// these delegates are required to keep context
|
441
|
+
this._mouseMoveDelegate = function(event) {
|
442
|
+
return self._mouseMove(event);
|
443
|
+
};
|
444
|
+
this._mouseUpDelegate = function(event) {
|
445
|
+
return self._mouseUp(event);
|
446
|
+
};
|
447
|
+
$(document)
|
448
|
+
.bind('mousemove.'+this.widgetName, this._mouseMoveDelegate)
|
449
|
+
.bind('mouseup.'+this.widgetName, this._mouseUpDelegate);
|
450
|
+
|
451
|
+
// preventDefault() is used to prevent the selection of text here -
|
452
|
+
// however, in Safari, this causes select boxes not to be selectable
|
453
|
+
// anymore, so this fix is needed
|
454
|
+
($.browser.safari || event.preventDefault());
|
455
|
+
|
456
|
+
event.originalEvent.mouseHandled = true;
|
457
|
+
return true;
|
458
|
+
},
|
459
|
+
|
460
|
+
_mouseMove: function(event) {
|
461
|
+
// IE mouseup check - mouseup happened when mouse was out of window
|
462
|
+
if ($.browser.msie && !event.button) {
|
463
|
+
return this._mouseUp(event);
|
464
|
+
}
|
465
|
+
|
466
|
+
if (this._mouseStarted) {
|
467
|
+
this._mouseDrag(event);
|
468
|
+
return event.preventDefault();
|
469
|
+
}
|
470
|
+
|
471
|
+
if (this._mouseDistanceMet(event) && this._mouseDelayMet(event)) {
|
472
|
+
this._mouseStarted =
|
473
|
+
(this._mouseStart(this._mouseDownEvent, event) !== false);
|
474
|
+
(this._mouseStarted ? this._mouseDrag(event) : this._mouseUp(event));
|
475
|
+
}
|
476
|
+
|
477
|
+
return !this._mouseStarted;
|
478
|
+
},
|
479
|
+
|
480
|
+
_mouseUp: function(event) {
|
481
|
+
$(document)
|
482
|
+
.unbind('mousemove.'+this.widgetName, this._mouseMoveDelegate)
|
483
|
+
.unbind('mouseup.'+this.widgetName, this._mouseUpDelegate);
|
484
|
+
|
485
|
+
if (this._mouseStarted) {
|
486
|
+
this._mouseStarted = false;
|
487
|
+
this._preventClickEvent = (event.target == this._mouseDownEvent.target);
|
488
|
+
this._mouseStop(event);
|
489
|
+
}
|
490
|
+
|
491
|
+
return false;
|
492
|
+
},
|
493
|
+
|
494
|
+
_mouseDistanceMet: function(event) {
|
495
|
+
return (Math.max(
|
496
|
+
Math.abs(this._mouseDownEvent.pageX - event.pageX),
|
497
|
+
Math.abs(this._mouseDownEvent.pageY - event.pageY)
|
498
|
+
) >= this.options.distance
|
499
|
+
);
|
500
|
+
},
|
501
|
+
|
502
|
+
_mouseDelayMet: function(event) {
|
503
|
+
return this.mouseDelayMet;
|
504
|
+
},
|
505
|
+
|
506
|
+
// These are placeholder methods, to be overriden by extending plugin
|
507
|
+
_mouseStart: function(event) {},
|
508
|
+
_mouseDrag: function(event) {},
|
509
|
+
_mouseStop: function(event) {},
|
510
|
+
_mouseCapture: function(event) { return true; }
|
511
|
+
};
|
512
|
+
|
513
|
+
$.ui.mouse.defaults = {
|
514
|
+
cancel: null,
|
515
|
+
distance: 1,
|
516
|
+
delay: 0
|
517
|
+
};
|
518
|
+
|
519
|
+
})(jQuery);
|