MARQ 0.0.1

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  1. data/LICENSE +20 -0
  2. data/R/CustomDS.R +80 -0
  3. data/R/GEO.R +249 -0
  4. data/R/MA.R +359 -0
  5. data/README.rdoc +29 -0
  6. data/bin/marq_config +170 -0
  7. data/install_scripts/CustomDS/Rakefile +223 -0
  8. data/install_scripts/GEO/Rakefile +258 -0
  9. data/install_scripts/GEO/platforms/GPL100.yaml +7 -0
  10. data/install_scripts/GEO/platforms/GPL1002.yaml +7 -0
  11. data/install_scripts/GEO/platforms/GPL1007.yaml +7 -0
  12. data/install_scripts/GEO/platforms/GPL101.yaml +7 -0
  13. data/install_scripts/GEO/platforms/GPL1010.yaml +7 -0
  14. data/install_scripts/GEO/platforms/GPL1073.yaml +7 -0
  15. data/install_scripts/GEO/platforms/GPL1074.yaml +4 -0
  16. data/install_scripts/GEO/platforms/GPL1090.yaml +7 -0
  17. data/install_scripts/GEO/platforms/GPL1104.yaml +7 -0
  18. data/install_scripts/GEO/platforms/GPL118.yaml +7 -0
  19. data/install_scripts/GEO/platforms/GPL1205.yaml +4 -0
  20. data/install_scripts/GEO/platforms/GPL1211.yaml +7 -0
  21. data/install_scripts/GEO/platforms/GPL1213.yaml +7 -0
  22. data/install_scripts/GEO/platforms/GPL1219.yaml +4 -0
  23. data/install_scripts/GEO/platforms/GPL1223.yaml +7 -0
  24. data/install_scripts/GEO/platforms/GPL1226.yaml +7 -0
  25. data/install_scripts/GEO/platforms/GPL1229.yaml +7 -0
  26. data/install_scripts/GEO/platforms/GPL1230.yaml +7 -0
  27. data/install_scripts/GEO/platforms/GPL1231.yaml +7 -0
  28. data/install_scripts/GEO/platforms/GPL1232.yaml +7 -0
  29. data/install_scripts/GEO/platforms/GPL1260.yaml +4 -0
  30. data/install_scripts/GEO/platforms/GPL1261.yaml +4 -0
  31. data/install_scripts/GEO/platforms/GPL127.yaml +4 -0
  32. data/install_scripts/GEO/platforms/GPL128.yaml +7 -0
  33. data/install_scripts/GEO/platforms/GPL1290.yaml +7 -0
  34. data/install_scripts/GEO/platforms/GPL1292.yaml +7 -0
  35. data/install_scripts/GEO/platforms/GPL1293.yaml +7 -0
  36. data/install_scripts/GEO/platforms/GPL1294.yaml +7 -0
  37. data/install_scripts/GEO/platforms/GPL1295.yaml +7 -0
  38. data/install_scripts/GEO/platforms/GPL13.yaml +4 -0
  39. data/install_scripts/GEO/platforms/GPL1310.yaml +7 -0
  40. data/install_scripts/GEO/platforms/GPL1313.yaml +7 -0
  41. data/install_scripts/GEO/platforms/GPL1323.yaml +7 -0
  42. data/install_scripts/GEO/platforms/GPL1331.yaml +7 -0
  43. data/install_scripts/GEO/platforms/GPL1352.yaml +4 -0
  44. data/install_scripts/GEO/platforms/GPL1355.yaml +4 -0
  45. data/install_scripts/GEO/platforms/GPL1382.yaml +7 -0
  46. data/install_scripts/GEO/platforms/GPL1387.yaml +7 -0
  47. data/install_scripts/GEO/platforms/GPL1397.yaml +4 -0
  48. data/install_scripts/GEO/platforms/GPL14.yaml +7 -0
  49. data/install_scripts/GEO/platforms/GPL1412.yaml +7 -0
  50. data/install_scripts/GEO/platforms/GPL1415.yaml +7 -0
  51. data/install_scripts/GEO/platforms/GPL1420.yaml +7 -0
  52. data/install_scripts/GEO/platforms/GPL144.yaml +7 -0
  53. data/install_scripts/GEO/platforms/GPL1449.yaml +7 -0
  54. data/install_scripts/GEO/platforms/GPL1458.yaml +7 -0
  55. data/install_scripts/GEO/platforms/GPL1523.yaml +7 -0
  56. data/install_scripts/GEO/platforms/GPL1524.yaml +7 -0
  57. data/install_scripts/GEO/platforms/GPL1528.yaml +7 -0
  58. data/install_scripts/GEO/platforms/GPL153.yaml +7 -0
  59. data/install_scripts/GEO/platforms/GPL1530.yaml +7 -0
  60. data/install_scripts/GEO/platforms/GPL1535.yaml +4 -0
  61. data/install_scripts/GEO/platforms/GPL155.yaml +7 -0
  62. data/install_scripts/GEO/platforms/GPL163.yaml +7 -0
  63. data/install_scripts/GEO/platforms/GPL168.yaml +7 -0
  64. data/install_scripts/GEO/platforms/GPL169.yaml +7 -0
  65. data/install_scripts/GEO/platforms/GPL1704.yaml +4 -0
  66. data/install_scripts/GEO/platforms/GPL1708.yaml +7 -0
  67. data/install_scripts/GEO/platforms/GPL1739.yaml +7 -0
  68. data/install_scripts/GEO/platforms/GPL1740.yaml +4 -0
  69. data/install_scripts/GEO/platforms/GPL1749.yaml +7 -0
  70. data/install_scripts/GEO/platforms/GPL177.yaml +7 -0
  71. data/install_scripts/GEO/platforms/GPL1790.yaml +7 -0
  72. data/install_scripts/GEO/platforms/GPL1792.yaml +7 -0
  73. data/install_scripts/GEO/platforms/GPL181.yaml +7 -0
  74. data/install_scripts/GEO/platforms/GPL1818.yaml +7 -0
  75. data/install_scripts/GEO/platforms/GPL1820.yaml +4 -0
  76. data/install_scripts/GEO/platforms/GPL1823.yaml +7 -0
  77. data/install_scripts/GEO/platforms/GPL1826.yaml +7 -0
  78. data/install_scripts/GEO/platforms/GPL183.yaml +7 -0
  79. data/install_scripts/GEO/platforms/GPL1831.yaml +7 -0
  80. data/install_scripts/GEO/platforms/GPL1833.yaml +7 -0
  81. data/install_scripts/GEO/platforms/GPL1872.yaml +4 -0
  82. data/install_scripts/GEO/platforms/GPL1911.yaml +7 -0
  83. data/install_scripts/GEO/platforms/GPL1914.yaml +4 -0
  84. data/install_scripts/GEO/platforms/GPL1928.yaml +7 -0
  85. data/install_scripts/GEO/platforms/GPL1942.yaml +7 -0
  86. data/install_scripts/GEO/platforms/GPL1945.yaml +7 -0
  87. data/install_scripts/GEO/platforms/GPL1964.yaml +7 -0
  88. data/install_scripts/GEO/platforms/GPL198.yaml +4 -0
  89. data/install_scripts/GEO/platforms/GPL1981.yaml +4 -0
  90. data/install_scripts/GEO/platforms/GPL200.yaml +7 -0
  91. data/install_scripts/GEO/platforms/GPL2006.yaml +7 -0
  92. data/install_scripts/GEO/platforms/GPL201.yaml +4 -0
  93. data/install_scripts/GEO/platforms/GPL2011.yaml +7 -0
  94. data/install_scripts/GEO/platforms/GPL2026.yaml +7 -0
  95. data/install_scripts/GEO/platforms/GPL205.yaml +7 -0
  96. data/install_scripts/GEO/platforms/GPL207.yaml +7 -0
  97. data/install_scripts/GEO/platforms/GPL2136.yaml +7 -0
  98. data/install_scripts/GEO/platforms/GPL220.yaml +7 -0
  99. data/install_scripts/GEO/platforms/GPL226.yaml +7 -0
  100. data/install_scripts/GEO/platforms/GPL24.yaml +4 -0
  101. data/install_scripts/GEO/platforms/GPL246.yaml +4 -0
  102. data/install_scripts/GEO/platforms/GPL247.yaml +7 -0
  103. data/install_scripts/GEO/platforms/GPL2507.yaml +4 -0
  104. data/install_scripts/GEO/platforms/GPL2529.yaml +4 -0
  105. data/install_scripts/GEO/platforms/GPL2531.yaml +7 -0
  106. data/install_scripts/GEO/platforms/GPL254.yaml +7 -0
  107. data/install_scripts/GEO/platforms/GPL2569.yaml +7 -0
  108. data/install_scripts/GEO/platforms/GPL257.yaml +7 -0
  109. data/install_scripts/GEO/platforms/GPL2598.yaml +7 -0
  110. data/install_scripts/GEO/platforms/GPL260.yaml +7 -0
  111. data/install_scripts/GEO/platforms/GPL2614.yaml +4 -0
  112. data/install_scripts/GEO/platforms/GPL2622.yaml +7 -0
  113. data/install_scripts/GEO/platforms/GPL2623.yaml +7 -0
  114. data/install_scripts/GEO/platforms/GPL2660.yaml +7 -0
  115. data/install_scripts/GEO/platforms/GPL2670.yaml +7 -0
  116. data/install_scripts/GEO/platforms/GPL2677.yaml +7 -0
  117. data/install_scripts/GEO/platforms/GPL2700.yaml +4 -0
  118. data/install_scripts/GEO/platforms/GPL2721.yaml +7 -0
  119. data/install_scripts/GEO/platforms/GPL2727.yaml +7 -0
  120. data/install_scripts/GEO/platforms/GPL273.yaml +7 -0
  121. data/install_scripts/GEO/platforms/GPL2763.yaml +7 -0
  122. data/install_scripts/GEO/platforms/GPL2824.yaml +7 -0
  123. data/install_scripts/GEO/platforms/GPL284.yaml +7 -0
  124. data/install_scripts/GEO/platforms/GPL287.yaml +4 -0
  125. data/install_scripts/GEO/platforms/GPL2872.yaml +7 -0
  126. data/install_scripts/GEO/platforms/GPL288.yaml +4 -0
  127. data/install_scripts/GEO/platforms/GPL2883.yaml +7 -0
  128. data/install_scripts/GEO/platforms/GPL289.yaml +4 -0
  129. data/install_scripts/GEO/platforms/GPL2895.yaml +4 -0
  130. data/install_scripts/GEO/platforms/GPL2897.yaml +7 -0
  131. data/install_scripts/GEO/platforms/GPL2902.yaml +7 -0
  132. data/install_scripts/GEO/platforms/GPL2987.yaml +4 -0
  133. data/install_scripts/GEO/platforms/GPL2995.yaml +7 -0
  134. data/install_scripts/GEO/platforms/GPL3039.yaml +4 -0
  135. data/install_scripts/GEO/platforms/GPL3050.yaml +7 -0
  136. data/install_scripts/GEO/platforms/GPL3084.yaml +7 -0
  137. data/install_scripts/GEO/platforms/GPL3113.yaml +7 -0
  138. data/install_scripts/GEO/platforms/GPL317.yaml +7 -0
  139. data/install_scripts/GEO/platforms/GPL319.yaml +7 -0
  140. data/install_scripts/GEO/platforms/GPL32.yaml +4 -0
  141. data/install_scripts/GEO/platforms/GPL3222.yaml +7 -0
  142. data/install_scripts/GEO/platforms/GPL3295.yaml +7 -0
  143. data/install_scripts/GEO/platforms/GPL3305.yaml +4 -0
  144. data/install_scripts/GEO/platforms/GPL3306.yaml +7 -0
  145. data/install_scripts/GEO/platforms/GPL3307.yaml +7 -0
  146. data/install_scripts/GEO/platforms/GPL333.yaml +4 -0
  147. data/install_scripts/GEO/platforms/GPL3341.yaml +7 -0
  148. data/install_scripts/GEO/platforms/GPL3349.yaml +7 -0
  149. data/install_scripts/GEO/platforms/GPL339.yaml +4 -0
  150. data/install_scripts/GEO/platforms/GPL340.yaml +4 -0
  151. data/install_scripts/GEO/platforms/GPL3408.yaml +7 -0
  152. data/install_scripts/GEO/platforms/GPL341.yaml +4 -0
  153. data/install_scripts/GEO/platforms/GPL3415.yaml +4 -0
  154. data/install_scripts/GEO/platforms/GPL3423.yaml +7 -0
  155. data/install_scripts/GEO/platforms/GPL3440.yaml +7 -0
  156. data/install_scripts/GEO/platforms/GPL3457.yaml +4 -0
  157. data/install_scripts/GEO/platforms/GPL3504.yaml +4 -0
  158. data/install_scripts/GEO/platforms/GPL3506.yaml +4 -0
  159. data/install_scripts/GEO/platforms/GPL355.yaml +7 -0
  160. data/install_scripts/GEO/platforms/GPL3558.yaml +7 -0
  161. data/install_scripts/GEO/platforms/GPL3607.yaml +7 -0
  162. data/install_scripts/GEO/platforms/GPL368.yaml +4 -0
  163. data/install_scripts/GEO/platforms/GPL3695.yaml +7 -0
  164. data/install_scripts/GEO/platforms/GPL371.yaml +7 -0
  165. data/install_scripts/GEO/platforms/GPL3834.yaml +4 -0
  166. data/install_scripts/GEO/platforms/GPL4006.yaml +7 -0
  167. data/install_scripts/GEO/platforms/GPL4055.yaml +7 -0
  168. data/install_scripts/GEO/platforms/GPL409.yaml +7 -0
  169. data/install_scripts/GEO/platforms/GPL4191.yaml +7 -0
  170. data/install_scripts/GEO/platforms/GPL4226.yaml +7 -0
  171. data/install_scripts/GEO/platforms/GPL4371.yaml +7 -0
  172. data/install_scripts/GEO/platforms/GPL4567.yaml +4 -0
  173. data/install_scripts/GEO/platforms/GPL4685.yaml +4 -0
  174. data/install_scripts/GEO/platforms/GPL483.yaml +7 -0
  175. data/install_scripts/GEO/platforms/GPL49.yaml +7 -0
  176. data/install_scripts/GEO/platforms/GPL50.yaml +7 -0
  177. data/install_scripts/GEO/platforms/GPL500.yaml +7 -0
  178. data/install_scripts/GEO/platforms/GPL507.yaml +4 -0
  179. data/install_scripts/GEO/platforms/GPL51.yaml +7 -0
  180. data/install_scripts/GEO/platforms/GPL513.yaml +7 -0
  181. data/install_scripts/GEO/platforms/GPL519.yaml +7 -0
  182. data/install_scripts/GEO/platforms/GPL52.yaml +7 -0
  183. data/install_scripts/GEO/platforms/GPL529.yaml +7 -0
  184. data/install_scripts/GEO/platforms/GPL53.yaml +7 -0
  185. data/install_scripts/GEO/platforms/GPL5356.yaml +7 -0
  186. data/install_scripts/GEO/platforms/GPL538.yaml +7 -0
  187. data/install_scripts/GEO/platforms/GPL54.yaml +7 -0
  188. data/install_scripts/GEO/platforms/GPL543.yaml +7 -0
  189. data/install_scripts/GEO/platforms/GPL544.yaml +7 -0
  190. data/install_scripts/GEO/platforms/GPL545.yaml +7 -0
  191. data/install_scripts/GEO/platforms/GPL546.yaml +7 -0
  192. data/install_scripts/GEO/platforms/GPL547.yaml +7 -0
  193. data/install_scripts/GEO/platforms/GPL549.yaml +7 -0
  194. data/install_scripts/GEO/platforms/GPL550.yaml +4 -0
  195. data/install_scripts/GEO/platforms/GPL56.yaml +7 -0
  196. data/install_scripts/GEO/platforms/GPL560.yaml +4 -0
  197. data/install_scripts/GEO/platforms/GPL564.yaml +7 -0
  198. data/install_scripts/GEO/platforms/GPL57.yaml +7 -0
  199. data/install_scripts/GEO/platforms/GPL570.yaml +4 -0
  200. data/install_scripts/GEO/platforms/GPL571.yaml +4 -0
  201. data/install_scripts/GEO/platforms/GPL576.yaml +7 -0
  202. data/install_scripts/GEO/platforms/GPL58.yaml +7 -0
  203. data/install_scripts/GEO/platforms/GPL5823.yaml +4 -0
  204. data/install_scripts/GEO/platforms/GPL59.yaml +7 -0
  205. data/install_scripts/GEO/platforms/GPL5915.yaml +4 -0
  206. data/install_scripts/GEO/platforms/GPL5947.yaml +7 -0
  207. data/install_scripts/GEO/platforms/GPL61.yaml +7 -0
  208. data/install_scripts/GEO/platforms/GPL64.yaml +7 -0
  209. data/install_scripts/GEO/platforms/GPL6419.yaml +7 -0
  210. data/install_scripts/GEO/platforms/GPL6424.yaml +7 -0
  211. data/install_scripts/GEO/platforms/GPL65.yaml +7 -0
  212. data/install_scripts/GEO/platforms/GPL6574.yaml +4 -0
  213. data/install_scripts/GEO/platforms/GPL6649.yaml +4 -0
  214. data/install_scripts/GEO/platforms/GPL67.yaml +7 -0
  215. data/install_scripts/GEO/platforms/GPL6720.yaml +7 -0
  216. data/install_scripts/GEO/platforms/GPL7054.yaml +4 -0
  217. data/install_scripts/GEO/platforms/GPL737.yaml +7 -0
  218. data/install_scripts/GEO/platforms/GPL738.yaml +7 -0
  219. data/install_scripts/GEO/platforms/GPL74.yaml +4 -0
  220. data/install_scripts/GEO/platforms/GPL75.yaml +4 -0
  221. data/install_scripts/GEO/platforms/GPL76.yaml +4 -0
  222. data/install_scripts/GEO/platforms/GPL764.yaml +7 -0
  223. data/install_scripts/GEO/platforms/GPL772.yaml +7 -0
  224. data/install_scripts/GEO/platforms/GPL782.yaml +7 -0
  225. data/install_scripts/GEO/platforms/GPL783.yaml +7 -0
  226. data/install_scripts/GEO/platforms/GPL784.yaml +7 -0
  227. data/install_scripts/GEO/platforms/GPL80.yaml +4 -0
  228. data/install_scripts/GEO/platforms/GPL81.yaml +4 -0
  229. data/install_scripts/GEO/platforms/GPL82.yaml +4 -0
  230. data/install_scripts/GEO/platforms/GPL83.yaml +4 -0
  231. data/install_scripts/GEO/platforms/GPL85.yaml +4 -0
  232. data/install_scripts/GEO/platforms/GPL86.yaml +4 -0
  233. data/install_scripts/GEO/platforms/GPL87.yaml +4 -0
  234. data/install_scripts/GEO/platforms/GPL870.yaml +7 -0
  235. data/install_scripts/GEO/platforms/GPL875.yaml +7 -0
  236. data/install_scripts/GEO/platforms/GPL884.yaml +7 -0
  237. data/install_scripts/GEO/platforms/GPL887.yaml +7 -0
  238. data/install_scripts/GEO/platforms/GPL89.yaml +4 -0
  239. data/install_scripts/GEO/platforms/GPL890.yaml +7 -0
  240. data/install_scripts/GEO/platforms/GPL891.yaml +7 -0
  241. data/install_scripts/GEO/platforms/GPL90.yaml +7 -0
  242. data/install_scripts/GEO/platforms/GPL91.yaml +4 -0
  243. data/install_scripts/GEO/platforms/GPL92.yaml +4 -0
  244. data/install_scripts/GEO/platforms/GPL920.yaml +7 -0
  245. data/install_scripts/GEO/platforms/GPL922.yaml +7 -0
  246. data/install_scripts/GEO/platforms/GPL924.yaml +7 -0
  247. data/install_scripts/GEO/platforms/GPL93.yaml +4 -0
  248. data/install_scripts/GEO/platforms/GPL96.yaml +4 -0
  249. data/install_scripts/GEO/platforms/GPL968.yaml +4 -0
  250. data/install_scripts/GEO/platforms/GPL97.yaml +4 -0
  251. data/install_scripts/GEO/platforms/GPL98.yaml +7 -0
  252. data/install_scripts/GEO/platforms/GPL981.yaml +7 -0
  253. data/install_scripts/GEO/platforms/GPL99.yaml +7 -0
  254. data/install_scripts/GEO/platforms/GPL999.yaml +7 -0
  255. data/install_scripts/GEO/series/GSE10018.yaml +61 -0
  256. data/install_scripts/GEO/series/GSE1002.yaml +135 -0
  257. data/install_scripts/GEO/series/GSE10066.yaml +31 -0
  258. data/install_scripts/GEO/series/GSE10073.yaml +19 -0
  259. data/install_scripts/GEO/series/GSE10091.yaml +15 -0
  260. data/install_scripts/GEO/series/GSE101.yaml +17 -0
  261. data/install_scripts/GEO/series/GSE10100.yaml +15 -0
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  267. data/install_scripts/GEO/series/GSE103.yaml +19 -0
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  270. data/install_scripts/GEO/series/GSE10521.yaml +56 -0
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  272. data/install_scripts/GEO/series/GSE1073.yaml +127 -0
  273. data/install_scripts/GEO/series/GSE10860.yaml +25 -0
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  300. data/install_scripts/GEO/series/GSE12104.yaml +10 -0
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  302. data/install_scripts/GEO/series/GSE12150.yaml +32 -0
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  305. data/install_scripts/GEO/series/GSE1365.yaml +14 -0
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  307. data/install_scripts/GEO/series/GSE1492.yaml +15 -0
  308. data/install_scripts/GEO/series/GSE15222.yaml +731 -0
  309. data/install_scripts/GEO/series/GSE1553.yaml +23 -0
  310. data/install_scripts/GEO/series/GSE1617.yaml +39 -0
  311. data/install_scripts/GEO/series/GSE1688.yaml +36 -0
  312. data/install_scripts/GEO/series/GSE1693.yaml +60 -0
  313. data/install_scripts/GEO/series/GSE1752.yaml +32 -0
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+
2
+ (function($){$.extend({tablesorter:new function(){var parsers=[],widgets=[];this.defaults={cssHeader:"header",cssAsc:"headerSortUp",cssDesc:"headerSortDown",sortInitialOrder:"asc",sortMultiSortKey:"shiftKey",sortForce:null,sortAppend:null,textExtraction:"simple",parsers:{},widgets:[],widgetZebra:{css:["even","odd"]},headers:{},widthFixed:false,cancelSelection:true,sortList:[],headerList:[],dateFormat:"us",decimal:'.',debug:false};function benchmark(s,d){log(s+","+(new Date().getTime()-d.getTime())+"ms");}this.benchmark=benchmark;function log(s){if(typeof console!="undefined"&&typeof console.debug!="undefined"){console.log(s);}else{alert(s);}}function buildParserCache(table,$headers){if(table.config.debug){var parsersDebug="";}var rows=table.tBodies[0].rows;if(table.tBodies[0].rows[0]){var list=[],cells=rows[0].cells,l=cells.length;for(var i=0;i<l;i++){var p=false;if($.metadata&&($($headers[i]).metadata()&&$($headers[i]).metadata().sorter)){p=getParserById($($headers[i]).metadata().sorter);}else if((table.config.headers[i]&&table.config.headers[i].sorter)){p=getParserById(table.config.headers[i].sorter);}if(!p){p=detectParserForColumn(table,cells[i]);}if(table.config.debug){parsersDebug+="column:"+i+" parser:"+p.id+"\n";}list.push(p);}}if(table.config.debug){log(parsersDebug);}return list;};function detectParserForColumn(table,node){var l=parsers.length;for(var i=1;i<l;i++){if(parsers[i].is($.trim(getElementText(table.config,node)),table,node)){return parsers[i];}}return parsers[0];}function getParserById(name){var l=parsers.length;for(var i=0;i<l;i++){if(parsers[i].id.toLowerCase()==name.toLowerCase()){return parsers[i];}}return false;}function buildCache(table){if(table.config.debug){var cacheTime=new Date();}var totalRows=(table.tBodies[0]&&table.tBodies[0].rows.length)||0,totalCells=(table.tBodies[0].rows[0]&&table.tBodies[0].rows[0].cells.length)||0,parsers=table.config.parsers,cache={row:[],normalized:[]};for(var i=0;i<totalRows;++i){var c=table.tBodies[0].rows[i],cols=[];cache.row.push($(c));for(var j=0;j<totalCells;++j){cols.push(parsers[j].format(getElementText(table.config,c.cells[j]),table,c.cells[j]));}cols.push(i);cache.normalized.push(cols);cols=null;};if(table.config.debug){benchmark("Building cache for "+totalRows+" rows:",cacheTime);}return cache;};function getElementText(config,node){if(!node)return"";var t="";if(config.textExtraction=="simple"){if(node.childNodes[0]&&node.childNodes[0].hasChildNodes()){t=node.childNodes[0].innerHTML;}else{t=node.innerHTML;}}else{if(typeof(config.textExtraction)=="function"){t=config.textExtraction(node);}else{t=$(node).text();}}return t;}function appendToTable(table,cache){if(table.config.debug){var appendTime=new Date()}var c=cache,r=c.row,n=c.normalized,totalRows=n.length,checkCell=(n[0].length-1),tableBody=$(table.tBodies[0]),rows=[];for(var i=0;i<totalRows;i++){rows.push(r[n[i][checkCell]]);if(!table.config.appender){var o=r[n[i][checkCell]];var l=o.length;for(var j=0;j<l;j++){tableBody[0].appendChild(o[j]);}}}if(table.config.appender){table.config.appender(table,rows);}rows=null;if(table.config.debug){benchmark("Rebuilt table:",appendTime);}applyWidget(table);setTimeout(function(){$(table).trigger("sortEnd");},0);};function buildHeaders(table){if(table.config.debug){var time=new Date();}var meta=($.metadata)?true:false,tableHeadersRows=[];for(var i=0;i<table.tHead.rows.length;i++){tableHeadersRows[i]=0;};$tableHeaders=$("thead th",table);$tableHeaders.each(function(index){this.count=0;this.column=index;this.order=formatSortingOrder(table.config.sortInitialOrder);if(checkHeaderMetadata(this)||checkHeaderOptions(table,index))this.sortDisabled=true;if(!this.sortDisabled){$(this).addClass(table.config.cssHeader);}table.config.headerList[index]=this;});if(table.config.debug){benchmark("Built headers:",time);log($tableHeaders);}return $tableHeaders;};function checkCellColSpan(table,rows,row){var arr=[],r=table.tHead.rows,c=r[row].cells;for(var i=0;i<c.length;i++){var cell=c[i];if(cell.colSpan>1){arr=arr.concat(checkCellColSpan(table,headerArr,row++));}else{if(table.tHead.length==1||(cell.rowSpan>1||!r[row+1])){arr.push(cell);}}}return arr;};function checkHeaderMetadata(cell){if(($.metadata)&&($(cell).metadata().sorter===false)){return true;};return false;}function checkHeaderOptions(table,i){if((table.config.headers[i])&&(table.config.headers[i].sorter===false)){return true;};return false;}function applyWidget(table){var c=table.config.widgets;var l=c.length;for(var i=0;i<l;i++){getWidgetById(c[i]).format(table);}}function getWidgetById(name){var l=widgets.length;for(var i=0;i<l;i++){if(widgets[i].id.toLowerCase()==name.toLowerCase()){return widgets[i];}}};function formatSortingOrder(v){if(typeof(v)!="Number"){i=(v.toLowerCase()=="desc")?1:0;}else{i=(v==(0||1))?v:0;}return i;}function isValueInArray(v,a){var l=a.length;for(var i=0;i<l;i++){if(a[i][0]==v){return true;}}return false;}function setHeadersCss(table,$headers,list,css){$headers.removeClass(css[0]).removeClass(css[1]);var h=[];$headers.each(function(offset){if(!this.sortDisabled){h[this.column]=$(this);}});var l=list.length;for(var i=0;i<l;i++){h[list[i][0]].addClass(css[list[i][1]]);}}function fixColumnWidth(table,$headers){var c=table.config;if(c.widthFixed){var colgroup=$('<colgroup>');$("tr:first td",table.tBodies[0]).each(function(){colgroup.append($('<col>').css('width',$(this).width()));});$(table).prepend(colgroup);};}function updateHeaderSortCount(table,sortList){var c=table.config,l=sortList.length;for(var i=0;i<l;i++){var s=sortList[i],o=c.headerList[s[0]];o.count=s[1];o.count++;}}function multisort(table,sortList,cache){if(table.config.debug){var sortTime=new Date();}var dynamicExp="var sortWrapper = function(a,b) {",l=sortList.length;for(var i=0;i<l;i++){var c=sortList[i][0];var order=sortList[i][1];var s=(getCachedSortType(table.config.parsers,c)=="text")?((order==0)?"sortText":"sortTextDesc"):((order==0)?"sortNumeric":"sortNumericDesc");var e="e"+i;dynamicExp+="var "+e+" = "+s+"(a["+c+"],b["+c+"]); ";dynamicExp+="if("+e+") { return "+e+"; } ";dynamicExp+="else { ";}var orgOrderCol=cache.normalized[0].length-1;dynamicExp+="return a["+orgOrderCol+"]-b["+orgOrderCol+"];";for(var i=0;i<l;i++){dynamicExp+="}; ";}dynamicExp+="return 0; ";dynamicExp+="}; ";eval(dynamicExp);cache.normalized.sort(sortWrapper);if(table.config.debug){benchmark("Sorting on "+sortList.toString()+" and dir "+order+" time:",sortTime);}return cache;};function sortText(a,b){return((a<b)?-1:((a>b)?1:0));};function sortTextDesc(a,b){return((b<a)?-1:((b>a)?1:0));};function sortNumeric(a,b){return a-b;};function sortNumericDesc(a,b){return b-a;};function getCachedSortType(parsers,i){return parsers[i].type;};this.construct=function(settings){return this.each(function(){if(!this.tHead||!this.tBodies)return;var $this,$document,$headers,cache,config,shiftDown=0,sortOrder;this.config={};config=$.extend(this.config,$.tablesorter.defaults,settings);$this=$(this);$headers=buildHeaders(this);this.config.parsers=buildParserCache(this,$headers);cache=buildCache(this);var sortCSS=[config.cssDesc,config.cssAsc];fixColumnWidth(this);$headers.click(function(e){$this.trigger("sortStart");var totalRows=($this[0].tBodies[0]&&$this[0].tBodies[0].rows.length)||0;if(!this.sortDisabled&&totalRows>0){var $cell=$(this);var i=this.column;this.order=this.count++%2;if(!e[config.sortMultiSortKey]){config.sortList=[];if(config.sortForce!=null){var a=config.sortForce;for(var j=0;j<a.length;j++){if(a[j][0]!=i){config.sortList.push(a[j]);}}}config.sortList.push([i,this.order]);}else{if(isValueInArray(i,config.sortList)){for(var j=0;j<config.sortList.length;j++){var s=config.sortList[j],o=config.headerList[s[0]];if(s[0]==i){o.count=s[1];o.count++;s[1]=o.count%2;}}}else{config.sortList.push([i,this.order]);}};setTimeout(function(){setHeadersCss($this[0],$headers,config.sortList,sortCSS);appendToTable($this[0],multisort($this[0],config.sortList,cache));},1);return false;}}).mousedown(function(){if(config.cancelSelection){this.onselectstart=function(){return false};return false;}});$this.bind("update",function(){this.config.parsers=buildParserCache(this,$headers);cache=buildCache(this);}).bind("sorton",function(e,list){$(this).trigger("sortStart");config.sortList=list;var sortList=config.sortList;updateHeaderSortCount(this,sortList);setHeadersCss(this,$headers,sortList,sortCSS);appendToTable(this,multisort(this,sortList,cache));}).bind("appendCache",function(){appendToTable(this,cache);}).bind("applyWidgetId",function(e,id){getWidgetById(id).format(this);}).bind("applyWidgets",function(){applyWidget(this);});if($.metadata&&($(this).metadata()&&$(this).metadata().sortlist)){config.sortList=$(this).metadata().sortlist;}if(config.sortList.length>0){$this.trigger("sorton",[config.sortList]);}applyWidget(this);});};this.addParser=function(parser){var l=parsers.length,a=true;for(var i=0;i<l;i++){if(parsers[i].id.toLowerCase()==parser.id.toLowerCase()){a=false;}}if(a){parsers.push(parser);};};this.addWidget=function(widget){widgets.push(widget);};this.formatFloat=function(s){var i=parseFloat(s);return(isNaN(i))?0:i;};this.formatInt=function(s){var i=parseInt(s);return(isNaN(i))?0:i;};this.isDigit=function(s,config){var DECIMAL='\\'+config.decimal;var exp='/(^[+]?0('+DECIMAL+'0+)?$)|(^([-+]?[1-9][0-9]*)$)|(^([-+]?((0?|[1-9][0-9]*)'+DECIMAL+'(0*[1-9][0-9]*)))$)|(^[-+]?[1-9]+[0-9]*'+DECIMAL+'0+$)/';return RegExp(exp).test($.trim(s));};this.clearTableBody=function(table){if($.browser.msie){function empty(){while(this.firstChild)this.removeChild(this.firstChild);}empty.apply(table.tBodies[0]);}else{table.tBodies[0].innerHTML="";}};}});$.fn.extend({tablesorter:$.tablesorter.construct});var ts=$.tablesorter;ts.addParser({id:"text",is:function(s){return true;},format:function(s){return $.trim(s.toLowerCase());},type:"text"});ts.addParser({id:"digit",is:function(s,table){var c=table.config;return $.tablesorter.isDigit(s,c);},format:function(s){return $.tablesorter.formatFloat(s);},type:"numeric"});ts.addParser({id:"currency",is:function(s){return/^[£$€?.]/.test(s);},format:function(s){return $.tablesorter.formatFloat(s.replace(new RegExp(/[^0-9.]/g),""));},type:"numeric"});ts.addParser({id:"ipAddress",is:function(s){return/^\d{2,3}[\.]\d{2,3}[\.]\d{2,3}[\.]\d{2,3}$/.test(s);},format:function(s){var a=s.split("."),r="",l=a.length;for(var i=0;i<l;i++){var item=a[i];if(item.length==2){r+="0"+item;}else{r+=item;}}return $.tablesorter.formatFloat(r);},type:"numeric"});ts.addParser({id:"url",is:function(s){return/^(https?|ftp|file):\/\/$/.test(s);},format:function(s){return jQuery.trim(s.replace(new RegExp(/(https?|ftp|file):\/\//),''));},type:"text"});ts.addParser({id:"isoDate",is:function(s){return/^\d{4}[\/-]\d{1,2}[\/-]\d{1,2}$/.test(s);},format:function(s){return $.tablesorter.formatFloat((s!="")?new Date(s.replace(new RegExp(/-/g),"/")).getTime():"0");},type:"numeric"});ts.addParser({id:"percent",is:function(s){return/\%$/.test($.trim(s));},format:function(s){return $.tablesorter.formatFloat(s.replace(new RegExp(/%/g),""));},type:"numeric"});ts.addParser({id:"usLongDate",is:function(s){return s.match(new RegExp(/^[A-Za-z]{3,10}\.? [0-9]{1,2}, ([0-9]{4}|'?[0-9]{2}) (([0-2]?[0-9]:[0-5][0-9])|([0-1]?[0-9]:[0-5][0-9]\s(AM|PM)))$/));},format:function(s){return $.tablesorter.formatFloat(new Date(s).getTime());},type:"numeric"});ts.addParser({id:"shortDate",is:function(s){return/\d{1,2}[\/\-]\d{1,2}[\/\-]\d{2,4}/.test(s);},format:function(s,table){var c=table.config;s=s.replace(/\-/g,"/");if(c.dateFormat=="us"){s=s.replace(/(\d{1,2})[\/\-](\d{1,2})[\/\-](\d{4})/,"$3/$1/$2");}else if(c.dateFormat=="uk"){s=s.replace(/(\d{1,2})[\/\-](\d{1,2})[\/\-](\d{4})/,"$3/$2/$1");}else if(c.dateFormat=="dd/mm/yy"||c.dateFormat=="dd-mm-yy"){s=s.replace(/(\d{1,2})[\/\-](\d{1,2})[\/\-](\d{2})/,"$1/$2/$3");}return $.tablesorter.formatFloat(new Date(s).getTime());},type:"numeric"});ts.addParser({id:"time",is:function(s){return/^(([0-2]?[0-9]:[0-5][0-9])|([0-1]?[0-9]:[0-5][0-9]\s(am|pm)))$/.test(s);},format:function(s){return $.tablesorter.formatFloat(new Date("2000/01/01 "+s).getTime());},type:"numeric"});ts.addParser({id:"metadata",is:function(s){return false;},format:function(s,table,cell){var c=table.config,p=(!c.parserMetadataName)?'sortValue':c.parserMetadataName;return $(cell).metadata()[p];},type:"numeric"});ts.addWidget({id:"zebra",format:function(table){if(table.config.debug){var time=new Date();}$("tr:visible",table.tBodies[0]).filter(':even').removeClass(table.config.widgetZebra.css[1]).addClass(table.config.widgetZebra.css[0]).end().filter(':odd').removeClass(table.config.widgetZebra.css[0]).addClass(table.config.widgetZebra.css[1]);if(table.config.debug){$.tablesorter.benchmark("Applying Zebra widget",time);}}});})(jQuery);
@@ -0,0 +1,39 @@
1
+ /* tables */
2
+ table.tablesorter {
3
+ font-family:arial;
4
+ background-color: #CDCDCD;
5
+ margin:10px 0pt 15px;
6
+ font-size: 8pt;
7
+ width: 100%;
8
+ text-align: left;
9
+ }
10
+ table.tablesorter thead tr th, table.tablesorter tfoot tr th {
11
+ background-color: #e6EEEE;
12
+ border: 1px solid #FFF;
13
+ font-size: 8pt;
14
+ padding: 4px;
15
+ }
16
+ table.tablesorter thead tr .header {
17
+ background-image: url(/plugins/tablesorter/images/bg.gif);
18
+ background-repeat: no-repeat;
19
+ background-position: center right;
20
+ cursor: pointer;
21
+ }
22
+ table.tablesorter tbody td {
23
+ color: #3D3D3D;
24
+ padding: 4px;
25
+ background-color: #FFF;
26
+ vertical-align: top;
27
+ }
28
+ table.tablesorter tbody tr.odd td {
29
+ background-color:#F0F0F6;
30
+ }
31
+ table.tablesorter thead tr .headerSortUp {
32
+ background-image: url(/plugins/tablesorter/images/asc.gif);
33
+ }
34
+ table.tablesorter thead tr .headerSortDown {
35
+ background-image: url(/plugins/tablesorter/images/desc.gif);
36
+ }
37
+ table.tablesorter thead tr .headerSortDown, table.tablesorter thead tr .headerSortUp {
38
+ background-color: #8dbdd8;
39
+ }
@@ -0,0 +1,5 @@
1
+ # See http://www.robotstxt.org/wc/norobots.html for documentation on how to use the robots.txt file
2
+ #
3
+ # To ban all spiders from the entire site uncomment the next two lines:
4
+ # User-Agent: *
5
+ # Disallow: /
@@ -0,0 +1,163 @@
1
+ /* ----------------------------------------------------------------------------------------------------------------*/
2
+ /* ---------->>> global settings needed for thickbox <<<-----------------------------------------------------------*/
3
+ /* ----------------------------------------------------------------------------------------------------------------*/
4
+ /**{padding: 0; margin: 0;}*/
5
+
6
+ /* ----------------------------------------------------------------------------------------------------------------*/
7
+ /* ---------->>> thickbox specific link and font settings <<<------------------------------------------------------*/
8
+ /* ----------------------------------------------------------------------------------------------------------------*/
9
+ #TB_window {
10
+ font: 12px Arial, Helvetica, sans-serif;
11
+ color: #333333;
12
+ }
13
+
14
+ #TB_secondLine {
15
+ font: 10px Arial, Helvetica, sans-serif;
16
+ color:#666666;
17
+ }
18
+
19
+ #TB_window a:link {color: #666666;}
20
+ #TB_window a:visited {color: #666666;}
21
+ #TB_window a:hover {color: #000;}
22
+ #TB_window a:active {color: #666666;}
23
+ #TB_window a:focus{color: #666666;}
24
+
25
+ /* ----------------------------------------------------------------------------------------------------------------*/
26
+ /* ---------->>> thickbox settings <<<-----------------------------------------------------------------------------*/
27
+ /* ----------------------------------------------------------------------------------------------------------------*/
28
+ #TB_overlay {
29
+ position: fixed;
30
+ z-index:100;
31
+ top: 0px;
32
+ left: 0px;
33
+ height:100%;
34
+ width:100%;
35
+ }
36
+
37
+ .TB_overlayMacFFBGHack {background: url("../images/macFFBgHack.png") repeat;}
38
+ .TB_overlayBG {
39
+ background-color:#000;
40
+ filter:alpha(opacity=75);
41
+ -moz-opacity: 0.75;
42
+ opacity: 0.75;
43
+ }
44
+
45
+ * html #TB_overlay { /* ie6 hack */
46
+ position: absolute;
47
+ height: expression(document.body.scrollHeight > document.body.offsetHeight ? document.body.scrollHeight : document.body.offsetHeight + 'px');
48
+ }
49
+
50
+ #TB_window {
51
+ position: fixed;
52
+ background: #ffffff;
53
+ z-index: 102;
54
+ color:#000000;
55
+ display:none;
56
+ border: 4px solid #525252;
57
+ text-align:left;
58
+ top:50%;
59
+ left:50%;
60
+ }
61
+
62
+ * html #TB_window { /* ie6 hack */
63
+ position: absolute;
64
+ margin-top: expression(0 - parseInt(this.offsetHeight / 2) + (TBWindowMargin = document.documentElement && document.documentElement.scrollTop || document.body.scrollTop) + 'px');
65
+ }
66
+
67
+ #TB_window img#TB_Image {
68
+ display:block;
69
+ margin: 15px 0 0 15px;
70
+ border-right: 1px solid #ccc;
71
+ border-bottom: 1px solid #ccc;
72
+ border-top: 1px solid #666;
73
+ border-left: 1px solid #666;
74
+ }
75
+
76
+ #TB_caption{
77
+ height:25px;
78
+ padding:7px 30px 10px 25px;
79
+ float:left;
80
+ }
81
+
82
+ #TB_closeWindow{
83
+ height:25px;
84
+ padding:11px 25px 10px 0;
85
+ float:right;
86
+ }
87
+
88
+ #TB_closeAjaxWindow{
89
+ padding:7px 10px 5px 0;
90
+ margin-bottom:1px;
91
+ text-align:right;
92
+ float:right;
93
+ }
94
+
95
+ #TB_ajaxWindowTitle{
96
+ float:left;
97
+ padding:7px 0 5px 10px;
98
+ margin-bottom:1px;
99
+ }
100
+
101
+ #TB_title{
102
+ background-color:#e8e8e8;
103
+ height:27px;
104
+ }
105
+
106
+ #TB_ajaxContent{
107
+ clear:both;
108
+ padding:2px 15px 15px 15px;
109
+ overflow:auto;
110
+ text-align:left;
111
+ line-height:1.4em;
112
+ }
113
+
114
+ #TB_ajaxContent.TB_modal{
115
+ padding:15px;
116
+ }
117
+
118
+ #TB_ajaxContent p{
119
+ padding:5px 0px 5px 0px;
120
+ }
121
+
122
+ #TB_load{
123
+ position: fixed;
124
+ display:none;
125
+ height:13px;
126
+ width:208px;
127
+ z-index:103;
128
+ top: 50%;
129
+ left: 50%;
130
+ margin: -6px 0 0 -104px; /* -height/2 0 0 -width/2 */
131
+ }
132
+
133
+ * html #TB_load { /* ie6 hack */
134
+ position: absolute;
135
+ margin-top: expression(0 - parseInt(this.offsetHeight / 2) + (TBWindowMargin = document.documentElement && document.documentElement.scrollTop || document.body.scrollTop) + 'px');
136
+ }
137
+
138
+ #TB_HideSelect{
139
+ z-index:99;
140
+ position:fixed;
141
+ top: 0;
142
+ left: 0;
143
+ background-color:#fff;
144
+ border:none;
145
+ filter:alpha(opacity=0);
146
+ -moz-opacity: 0;
147
+ opacity: 0;
148
+ height:100%;
149
+ width:100%;
150
+ }
151
+
152
+ * html #TB_HideSelect { /* ie6 hack */
153
+ position: absolute;
154
+ height: expression(document.body.scrollHeight > document.body.offsetHeight ? document.body.scrollHeight : document.body.offsetHeight + 'px');
155
+ }
156
+
157
+ #TB_iframeContent{
158
+ clear:both;
159
+ border:none;
160
+ margin-bottom:-1px;
161
+ margin-top:1px;
162
+ _margin-bottom:1px;
163
+ }
@@ -0,0 +1,7 @@
1
+ require File.join(File.dirname(__FILE__), '..', 'spec_helper.rb')
2
+
3
+ describe "/main" do
4
+ before(:each) do
5
+ @response = request("/main")
6
+ end
7
+ end
@@ -0,0 +1,7 @@
1
+ require File.join(File.dirname(__FILE__), '..', 'spec_helper.rb')
2
+
3
+ describe "/results" do
4
+ before(:each) do
5
+ @response = request("/results")
6
+ end
7
+ end
File without changes
@@ -0,0 +1,20 @@
1
+ require "rubygems"
2
+
3
+ # Add the local gems dir if found within the app root; any dependencies loaded
4
+ # hereafter will try to load from the local gems before loading system gems.
5
+ if (local_gem_dir = File.join(File.dirname(__FILE__), '..', 'gems')) && $BUNDLE.nil?
6
+ $BUNDLE = true; Gem.clear_paths; Gem.path.unshift(local_gem_dir)
7
+ end
8
+
9
+ require "merb-core"
10
+ require "spec" # Satisfies Autotest and anyone else not using the Rake tasks
11
+
12
+ # this loads all plugins required in your init file so don't add them
13
+ # here again, Merb will do it for you
14
+ Merb.start_environment(:testing => true, :adapter => 'runner', :environment => ENV['MERB_ENV'] || 'test')
15
+
16
+ Spec::Runner.configure do |config|
17
+ config.include(Merb::Test::ViewHelper)
18
+ config.include(Merb::Test::RouteHelper)
19
+ config.include(Merb::Test::ControllerHelper)
20
+ end
@@ -0,0 +1,31 @@
1
+ #!/usr/bin/env ruby
2
+
3
+ # This was added by Merb's bundler
4
+
5
+ require "rubygems"
6
+ require File.join(File.dirname(__FILE__), "common")
7
+
8
+ gems_dir = File.join(File.dirname(__FILE__), '..', 'gems')
9
+
10
+ if File.directory?(gems_dir)
11
+ $BUNDLE = true
12
+ Gem.clear_paths
13
+ Gem.path.replace([File.expand_path(gems_dir)])
14
+ ENV["PATH"] = "#{File.dirname(__FILE__)}:#{ENV["PATH"]}"
15
+
16
+ gem_file = File.join(gems_dir, "specifications", "<%= spec.name %>-*.gemspec")
17
+
18
+ if local_gem = Dir[gem_file].last
19
+ version = File.basename(local_gem)[/-([\.\d]+)\.gemspec$/, 1]
20
+ end
21
+ end
22
+
23
+ version ||= "<%= Gem::Requirement.default %>"
24
+
25
+ if ARGV.first =~ /^_(.*)_$/ and Gem::Version.correct? $1 then
26
+ version = $1
27
+ ARGV.shift
28
+ end
29
+
30
+ gem '<%= @spec.name %>', version
31
+ load '<%= bin_file_name %>'
@@ -0,0 +1,68 @@
1
+ # This was added via Merb's bundler
2
+
3
+ require "rubygems"
4
+ require "rubygems/source_index"
5
+
6
+ module Gem
7
+ BUNDLED_SPECS = File.join(Dir.pwd, "gems", "specifications")
8
+ MAIN_INDEX = Gem::SourceIndex.from_gems_in(BUNDLED_SPECS)
9
+ FALLBACK_INDEX = Gem::SourceIndex.from_installed_gems
10
+
11
+ def self.source_index
12
+ MultiSourceIndex.new
13
+ end
14
+
15
+ def self.searcher
16
+ MultiPathSearcher.new
17
+ end
18
+
19
+ class ArbitrarySearcher < GemPathSearcher
20
+ def initialize(source_index)
21
+ @source_index = source_index
22
+ super()
23
+ end
24
+
25
+ def init_gemspecs
26
+ @source_index.map { |_, spec| spec }.sort { |a,b|
27
+ (a.name <=> b.name).nonzero? || (b.version <=> a.version)
28
+ }
29
+ end
30
+ end
31
+
32
+ class MultiPathSearcher
33
+ def initialize
34
+ @main_searcher = ArbitrarySearcher.new(MAIN_INDEX)
35
+ @fallback_searcher = ArbitrarySearcher.new(FALLBACK_INDEX)
36
+ end
37
+
38
+ def find(path)
39
+ try = @main_searcher.find(path)
40
+ return try if try
41
+ @fallback_searcher.find(path)
42
+ end
43
+
44
+ def find_all(path)
45
+ try = @main_searcher.find_all(path)
46
+ return try unless try.empty?
47
+ @fallback_searcher.find_all(path)
48
+ end
49
+ end
50
+
51
+ class MultiSourceIndex
52
+ # Used by merb.thor to confirm; not needed when MSI is in use
53
+ def load_gems_in(*args)
54
+ end
55
+
56
+ def search(*args)
57
+ try = MAIN_INDEX.search(*args)
58
+ return try unless try.empty?
59
+ FALLBACK_INDEX.search(*args)
60
+ end
61
+
62
+ def find_name(*args)
63
+ try = MAIN_INDEX.find_name(*args)
64
+ return try unless try.empty?
65
+ FALLBACK_INDEX.find_name(*args)
66
+ end
67
+ end
68
+ end
@@ -0,0 +1,125 @@
1
+ require "erb"
2
+
3
+ Gem.pre_install_hooks.push(proc do |installer|
4
+ unless File.file?(installer.bin_dir / "common.rb")
5
+ FileUtils.mkdir_p(installer.bin_dir)
6
+ FileUtils.cp(File.dirname(__FILE__) / "common.rb", installer.bin_dir / "common.rb")
7
+ end
8
+
9
+ include ColorfulMessages
10
+ name = installer.spec.name
11
+ if $GEMS && versions = ($GEMS.assoc(name) || [])[1]
12
+ dep = Gem::Dependency.new(name, versions)
13
+ unless dep.version_requirements.satisfied_by?(installer.spec.version)
14
+ error "Cannot install #{installer.spec.full_name} " \
15
+ "for #{$INSTALLING}; " \
16
+ "you required #{dep}"
17
+ ::Thor::Tasks::Merb::Gem.rollback_trans
18
+ exit!
19
+ end
20
+ end
21
+ success "Installing #{installer.spec.full_name}"
22
+ end)
23
+
24
+ class ::Gem::Uninstaller
25
+ def self._with_silent_ui
26
+
27
+ ui = Gem::DefaultUserInteraction.ui
28
+ def ui.say(str)
29
+ puts "- #{str}"
30
+ end
31
+
32
+ yield
33
+
34
+ class << Gem::DefaultUserInteraction.ui
35
+ remove_method :say
36
+ end
37
+ end
38
+
39
+ def self._uninstall(source_index, name, op, version)
40
+ unless source_index.find_name(name, "#{op} #{version}").empty?
41
+ uninstaller = Gem::Uninstaller.new(
42
+ name,
43
+ :version => "#{op} #{version}",
44
+ :install_dir => Dir.pwd / "gems",
45
+ :all => true,
46
+ :ignore => true
47
+ )
48
+ _with_silent_ui { uninstaller.uninstall }
49
+ end
50
+ end
51
+
52
+ def self._uninstall_others(source_index, name, version)
53
+ _uninstall(source_index, name, "<", version)
54
+ _uninstall(source_index, name, ">", version)
55
+ end
56
+ end
57
+
58
+ Gem.post_install_hooks.push(proc do |installer|
59
+ source_index = installer.instance_variable_get("@source_index")
60
+ ::Gem::Uninstaller._uninstall_others(
61
+ source_index, installer.spec.name, installer.spec.version
62
+ )
63
+ end)
64
+
65
+ class ::Gem::DependencyInstaller
66
+ alias old_fg find_gems_with_sources
67
+
68
+ def find_gems_with_sources(dep)
69
+ if @source_index.any? { |_, installed_spec|
70
+ installed_spec.satisfies_requirement?(dep)
71
+ }
72
+ return []
73
+ end
74
+
75
+ old_fg(dep)
76
+ end
77
+ end
78
+
79
+ class ::Gem::SpecFetcher
80
+ alias old_fetch fetch
81
+ def fetch(dependency, all = false, matching_platform = true)
82
+ idx = Gem::SourceIndex.from_installed_gems
83
+
84
+ reqs = dependency.version_requirements.requirements
85
+
86
+ if reqs.size == 1 && reqs[0][0] == "="
87
+ dep = idx.search(dependency).sort.last
88
+ end
89
+
90
+ if dep
91
+ file = dep.loaded_from.dup
92
+ file.gsub!(/specifications/, "cache")
93
+ file.gsub!(/gemspec$/, "gem")
94
+ spec = ::Gem::Format.from_file_by_path(file).spec
95
+ [[spec, file]]
96
+ else
97
+ old_fetch(dependency, all, matching_platform)
98
+ end
99
+ end
100
+ end
101
+
102
+ class ::Gem::Installer
103
+ def app_script_text(bin_file_name)
104
+ template = File.read(File.dirname(__FILE__) / "app_script.rb")
105
+ erb = ERB.new(template)
106
+ erb.result(binding)
107
+ end
108
+ end
109
+
110
+ class ::Gem::Specification
111
+ def recursive_dependencies(from, index = Gem.source_index)
112
+ specs = self.runtime_dependencies.map do |dep|
113
+ spec = index.search(dep).last
114
+ unless spec
115
+ from_name = from.is_a?(::Gem::Specification) ? from.full_name : from.to_s
116
+ wider_net = index.find_name(dep.name).last
117
+ ThorUI.error "Needed #{dep} for #{from_name}, but could not find it"
118
+ ThorUI.error "Found #{wider_net.full_name}" if wider_net
119
+ ::Thor::Tasks::Merb::Gem.rollback_trans
120
+ end
121
+ spec
122
+ end
123
+ specs + specs.map {|s| s.recursive_dependencies(self, index)}.flatten.uniq
124
+ end
125
+ end