MARQ 0.0.1

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  1. data/LICENSE +20 -0
  2. data/R/CustomDS.R +80 -0
  3. data/R/GEO.R +249 -0
  4. data/R/MA.R +359 -0
  5. data/README.rdoc +29 -0
  6. data/bin/marq_config +170 -0
  7. data/install_scripts/CustomDS/Rakefile +223 -0
  8. data/install_scripts/GEO/Rakefile +258 -0
  9. data/install_scripts/GEO/platforms/GPL100.yaml +7 -0
  10. data/install_scripts/GEO/platforms/GPL1002.yaml +7 -0
  11. data/install_scripts/GEO/platforms/GPL1007.yaml +7 -0
  12. data/install_scripts/GEO/platforms/GPL101.yaml +7 -0
  13. data/install_scripts/GEO/platforms/GPL1010.yaml +7 -0
  14. data/install_scripts/GEO/platforms/GPL1073.yaml +7 -0
  15. data/install_scripts/GEO/platforms/GPL1074.yaml +4 -0
  16. data/install_scripts/GEO/platforms/GPL1090.yaml +7 -0
  17. data/install_scripts/GEO/platforms/GPL1104.yaml +7 -0
  18. data/install_scripts/GEO/platforms/GPL118.yaml +7 -0
  19. data/install_scripts/GEO/platforms/GPL1205.yaml +4 -0
  20. data/install_scripts/GEO/platforms/GPL1211.yaml +7 -0
  21. data/install_scripts/GEO/platforms/GPL1213.yaml +7 -0
  22. data/install_scripts/GEO/platforms/GPL1219.yaml +4 -0
  23. data/install_scripts/GEO/platforms/GPL1223.yaml +7 -0
  24. data/install_scripts/GEO/platforms/GPL1226.yaml +7 -0
  25. data/install_scripts/GEO/platforms/GPL1229.yaml +7 -0
  26. data/install_scripts/GEO/platforms/GPL1230.yaml +7 -0
  27. data/install_scripts/GEO/platforms/GPL1231.yaml +7 -0
  28. data/install_scripts/GEO/platforms/GPL1232.yaml +7 -0
  29. data/install_scripts/GEO/platforms/GPL1260.yaml +4 -0
  30. data/install_scripts/GEO/platforms/GPL1261.yaml +4 -0
  31. data/install_scripts/GEO/platforms/GPL127.yaml +4 -0
  32. data/install_scripts/GEO/platforms/GPL128.yaml +7 -0
  33. data/install_scripts/GEO/platforms/GPL1290.yaml +7 -0
  34. data/install_scripts/GEO/platforms/GPL1292.yaml +7 -0
  35. data/install_scripts/GEO/platforms/GPL1293.yaml +7 -0
  36. data/install_scripts/GEO/platforms/GPL1294.yaml +7 -0
  37. data/install_scripts/GEO/platforms/GPL1295.yaml +7 -0
  38. data/install_scripts/GEO/platforms/GPL13.yaml +4 -0
  39. data/install_scripts/GEO/platforms/GPL1310.yaml +7 -0
  40. data/install_scripts/GEO/platforms/GPL1313.yaml +7 -0
  41. data/install_scripts/GEO/platforms/GPL1323.yaml +7 -0
  42. data/install_scripts/GEO/platforms/GPL1331.yaml +7 -0
  43. data/install_scripts/GEO/platforms/GPL1352.yaml +4 -0
  44. data/install_scripts/GEO/platforms/GPL1355.yaml +4 -0
  45. data/install_scripts/GEO/platforms/GPL1382.yaml +7 -0
  46. data/install_scripts/GEO/platforms/GPL1387.yaml +7 -0
  47. data/install_scripts/GEO/platforms/GPL1397.yaml +4 -0
  48. data/install_scripts/GEO/platforms/GPL14.yaml +7 -0
  49. data/install_scripts/GEO/platforms/GPL1412.yaml +7 -0
  50. data/install_scripts/GEO/platforms/GPL1415.yaml +7 -0
  51. data/install_scripts/GEO/platforms/GPL1420.yaml +7 -0
  52. data/install_scripts/GEO/platforms/GPL144.yaml +7 -0
  53. data/install_scripts/GEO/platforms/GPL1449.yaml +7 -0
  54. data/install_scripts/GEO/platforms/GPL1458.yaml +7 -0
  55. data/install_scripts/GEO/platforms/GPL1523.yaml +7 -0
  56. data/install_scripts/GEO/platforms/GPL1524.yaml +7 -0
  57. data/install_scripts/GEO/platforms/GPL1528.yaml +7 -0
  58. data/install_scripts/GEO/platforms/GPL153.yaml +7 -0
  59. data/install_scripts/GEO/platforms/GPL1530.yaml +7 -0
  60. data/install_scripts/GEO/platforms/GPL1535.yaml +4 -0
  61. data/install_scripts/GEO/platforms/GPL155.yaml +7 -0
  62. data/install_scripts/GEO/platforms/GPL163.yaml +7 -0
  63. data/install_scripts/GEO/platforms/GPL168.yaml +7 -0
  64. data/install_scripts/GEO/platforms/GPL169.yaml +7 -0
  65. data/install_scripts/GEO/platforms/GPL1704.yaml +4 -0
  66. data/install_scripts/GEO/platforms/GPL1708.yaml +7 -0
  67. data/install_scripts/GEO/platforms/GPL1739.yaml +7 -0
  68. data/install_scripts/GEO/platforms/GPL1740.yaml +4 -0
  69. data/install_scripts/GEO/platforms/GPL1749.yaml +7 -0
  70. data/install_scripts/GEO/platforms/GPL177.yaml +7 -0
  71. data/install_scripts/GEO/platforms/GPL1790.yaml +7 -0
  72. data/install_scripts/GEO/platforms/GPL1792.yaml +7 -0
  73. data/install_scripts/GEO/platforms/GPL181.yaml +7 -0
  74. data/install_scripts/GEO/platforms/GPL1818.yaml +7 -0
  75. data/install_scripts/GEO/platforms/GPL1820.yaml +4 -0
  76. data/install_scripts/GEO/platforms/GPL1823.yaml +7 -0
  77. data/install_scripts/GEO/platforms/GPL1826.yaml +7 -0
  78. data/install_scripts/GEO/platforms/GPL183.yaml +7 -0
  79. data/install_scripts/GEO/platforms/GPL1831.yaml +7 -0
  80. data/install_scripts/GEO/platforms/GPL1833.yaml +7 -0
  81. data/install_scripts/GEO/platforms/GPL1872.yaml +4 -0
  82. data/install_scripts/GEO/platforms/GPL1911.yaml +7 -0
  83. data/install_scripts/GEO/platforms/GPL1914.yaml +4 -0
  84. data/install_scripts/GEO/platforms/GPL1928.yaml +7 -0
  85. data/install_scripts/GEO/platforms/GPL1942.yaml +7 -0
  86. data/install_scripts/GEO/platforms/GPL1945.yaml +7 -0
  87. data/install_scripts/GEO/platforms/GPL1964.yaml +7 -0
  88. data/install_scripts/GEO/platforms/GPL198.yaml +4 -0
  89. data/install_scripts/GEO/platforms/GPL1981.yaml +4 -0
  90. data/install_scripts/GEO/platforms/GPL200.yaml +7 -0
  91. data/install_scripts/GEO/platforms/GPL2006.yaml +7 -0
  92. data/install_scripts/GEO/platforms/GPL201.yaml +4 -0
  93. data/install_scripts/GEO/platforms/GPL2011.yaml +7 -0
  94. data/install_scripts/GEO/platforms/GPL2026.yaml +7 -0
  95. data/install_scripts/GEO/platforms/GPL205.yaml +7 -0
  96. data/install_scripts/GEO/platforms/GPL207.yaml +7 -0
  97. data/install_scripts/GEO/platforms/GPL2136.yaml +7 -0
  98. data/install_scripts/GEO/platforms/GPL220.yaml +7 -0
  99. data/install_scripts/GEO/platforms/GPL226.yaml +7 -0
  100. data/install_scripts/GEO/platforms/GPL24.yaml +4 -0
  101. data/install_scripts/GEO/platforms/GPL246.yaml +4 -0
  102. data/install_scripts/GEO/platforms/GPL247.yaml +7 -0
  103. data/install_scripts/GEO/platforms/GPL2507.yaml +4 -0
  104. data/install_scripts/GEO/platforms/GPL2529.yaml +4 -0
  105. data/install_scripts/GEO/platforms/GPL2531.yaml +7 -0
  106. data/install_scripts/GEO/platforms/GPL254.yaml +7 -0
  107. data/install_scripts/GEO/platforms/GPL2569.yaml +7 -0
  108. data/install_scripts/GEO/platforms/GPL257.yaml +7 -0
  109. data/install_scripts/GEO/platforms/GPL2598.yaml +7 -0
  110. data/install_scripts/GEO/platforms/GPL260.yaml +7 -0
  111. data/install_scripts/GEO/platforms/GPL2614.yaml +4 -0
  112. data/install_scripts/GEO/platforms/GPL2622.yaml +7 -0
  113. data/install_scripts/GEO/platforms/GPL2623.yaml +7 -0
  114. data/install_scripts/GEO/platforms/GPL2660.yaml +7 -0
  115. data/install_scripts/GEO/platforms/GPL2670.yaml +7 -0
  116. data/install_scripts/GEO/platforms/GPL2677.yaml +7 -0
  117. data/install_scripts/GEO/platforms/GPL2700.yaml +4 -0
  118. data/install_scripts/GEO/platforms/GPL2721.yaml +7 -0
  119. data/install_scripts/GEO/platforms/GPL2727.yaml +7 -0
  120. data/install_scripts/GEO/platforms/GPL273.yaml +7 -0
  121. data/install_scripts/GEO/platforms/GPL2763.yaml +7 -0
  122. data/install_scripts/GEO/platforms/GPL2824.yaml +7 -0
  123. data/install_scripts/GEO/platforms/GPL284.yaml +7 -0
  124. data/install_scripts/GEO/platforms/GPL287.yaml +4 -0
  125. data/install_scripts/GEO/platforms/GPL2872.yaml +7 -0
  126. data/install_scripts/GEO/platforms/GPL288.yaml +4 -0
  127. data/install_scripts/GEO/platforms/GPL2883.yaml +7 -0
  128. data/install_scripts/GEO/platforms/GPL289.yaml +4 -0
  129. data/install_scripts/GEO/platforms/GPL2895.yaml +4 -0
  130. data/install_scripts/GEO/platforms/GPL2897.yaml +7 -0
  131. data/install_scripts/GEO/platforms/GPL2902.yaml +7 -0
  132. data/install_scripts/GEO/platforms/GPL2987.yaml +4 -0
  133. data/install_scripts/GEO/platforms/GPL2995.yaml +7 -0
  134. data/install_scripts/GEO/platforms/GPL3039.yaml +4 -0
  135. data/install_scripts/GEO/platforms/GPL3050.yaml +7 -0
  136. data/install_scripts/GEO/platforms/GPL3084.yaml +7 -0
  137. data/install_scripts/GEO/platforms/GPL3113.yaml +7 -0
  138. data/install_scripts/GEO/platforms/GPL317.yaml +7 -0
  139. data/install_scripts/GEO/platforms/GPL319.yaml +7 -0
  140. data/install_scripts/GEO/platforms/GPL32.yaml +4 -0
  141. data/install_scripts/GEO/platforms/GPL3222.yaml +7 -0
  142. data/install_scripts/GEO/platforms/GPL3295.yaml +7 -0
  143. data/install_scripts/GEO/platforms/GPL3305.yaml +4 -0
  144. data/install_scripts/GEO/platforms/GPL3306.yaml +7 -0
  145. data/install_scripts/GEO/platforms/GPL3307.yaml +7 -0
  146. data/install_scripts/GEO/platforms/GPL333.yaml +4 -0
  147. data/install_scripts/GEO/platforms/GPL3341.yaml +7 -0
  148. data/install_scripts/GEO/platforms/GPL3349.yaml +7 -0
  149. data/install_scripts/GEO/platforms/GPL339.yaml +4 -0
  150. data/install_scripts/GEO/platforms/GPL340.yaml +4 -0
  151. data/install_scripts/GEO/platforms/GPL3408.yaml +7 -0
  152. data/install_scripts/GEO/platforms/GPL341.yaml +4 -0
  153. data/install_scripts/GEO/platforms/GPL3415.yaml +4 -0
  154. data/install_scripts/GEO/platforms/GPL3423.yaml +7 -0
  155. data/install_scripts/GEO/platforms/GPL3440.yaml +7 -0
  156. data/install_scripts/GEO/platforms/GPL3457.yaml +4 -0
  157. data/install_scripts/GEO/platforms/GPL3504.yaml +4 -0
  158. data/install_scripts/GEO/platforms/GPL3506.yaml +4 -0
  159. data/install_scripts/GEO/platforms/GPL355.yaml +7 -0
  160. data/install_scripts/GEO/platforms/GPL3558.yaml +7 -0
  161. data/install_scripts/GEO/platforms/GPL3607.yaml +7 -0
  162. data/install_scripts/GEO/platforms/GPL368.yaml +4 -0
  163. data/install_scripts/GEO/platforms/GPL3695.yaml +7 -0
  164. data/install_scripts/GEO/platforms/GPL371.yaml +7 -0
  165. data/install_scripts/GEO/platforms/GPL3834.yaml +4 -0
  166. data/install_scripts/GEO/platforms/GPL4006.yaml +7 -0
  167. data/install_scripts/GEO/platforms/GPL4055.yaml +7 -0
  168. data/install_scripts/GEO/platforms/GPL409.yaml +7 -0
  169. data/install_scripts/GEO/platforms/GPL4191.yaml +7 -0
  170. data/install_scripts/GEO/platforms/GPL4226.yaml +7 -0
  171. data/install_scripts/GEO/platforms/GPL4371.yaml +7 -0
  172. data/install_scripts/GEO/platforms/GPL4567.yaml +4 -0
  173. data/install_scripts/GEO/platforms/GPL4685.yaml +4 -0
  174. data/install_scripts/GEO/platforms/GPL483.yaml +7 -0
  175. data/install_scripts/GEO/platforms/GPL49.yaml +7 -0
  176. data/install_scripts/GEO/platforms/GPL50.yaml +7 -0
  177. data/install_scripts/GEO/platforms/GPL500.yaml +7 -0
  178. data/install_scripts/GEO/platforms/GPL507.yaml +4 -0
  179. data/install_scripts/GEO/platforms/GPL51.yaml +7 -0
  180. data/install_scripts/GEO/platforms/GPL513.yaml +7 -0
  181. data/install_scripts/GEO/platforms/GPL519.yaml +7 -0
  182. data/install_scripts/GEO/platforms/GPL52.yaml +7 -0
  183. data/install_scripts/GEO/platforms/GPL529.yaml +7 -0
  184. data/install_scripts/GEO/platforms/GPL53.yaml +7 -0
  185. data/install_scripts/GEO/platforms/GPL5356.yaml +7 -0
  186. data/install_scripts/GEO/platforms/GPL538.yaml +7 -0
  187. data/install_scripts/GEO/platforms/GPL54.yaml +7 -0
  188. data/install_scripts/GEO/platforms/GPL543.yaml +7 -0
  189. data/install_scripts/GEO/platforms/GPL544.yaml +7 -0
  190. data/install_scripts/GEO/platforms/GPL545.yaml +7 -0
  191. data/install_scripts/GEO/platforms/GPL546.yaml +7 -0
  192. data/install_scripts/GEO/platforms/GPL547.yaml +7 -0
  193. data/install_scripts/GEO/platforms/GPL549.yaml +7 -0
  194. data/install_scripts/GEO/platforms/GPL550.yaml +4 -0
  195. data/install_scripts/GEO/platforms/GPL56.yaml +7 -0
  196. data/install_scripts/GEO/platforms/GPL560.yaml +4 -0
  197. data/install_scripts/GEO/platforms/GPL564.yaml +7 -0
  198. data/install_scripts/GEO/platforms/GPL57.yaml +7 -0
  199. data/install_scripts/GEO/platforms/GPL570.yaml +4 -0
  200. data/install_scripts/GEO/platforms/GPL571.yaml +4 -0
  201. data/install_scripts/GEO/platforms/GPL576.yaml +7 -0
  202. data/install_scripts/GEO/platforms/GPL58.yaml +7 -0
  203. data/install_scripts/GEO/platforms/GPL5823.yaml +4 -0
  204. data/install_scripts/GEO/platforms/GPL59.yaml +7 -0
  205. data/install_scripts/GEO/platforms/GPL5915.yaml +4 -0
  206. data/install_scripts/GEO/platforms/GPL5947.yaml +7 -0
  207. data/install_scripts/GEO/platforms/GPL61.yaml +7 -0
  208. data/install_scripts/GEO/platforms/GPL64.yaml +7 -0
  209. data/install_scripts/GEO/platforms/GPL6419.yaml +7 -0
  210. data/install_scripts/GEO/platforms/GPL6424.yaml +7 -0
  211. data/install_scripts/GEO/platforms/GPL65.yaml +7 -0
  212. data/install_scripts/GEO/platforms/GPL6574.yaml +4 -0
  213. data/install_scripts/GEO/platforms/GPL6649.yaml +4 -0
  214. data/install_scripts/GEO/platforms/GPL67.yaml +7 -0
  215. data/install_scripts/GEO/platforms/GPL6720.yaml +7 -0
  216. data/install_scripts/GEO/platforms/GPL7054.yaml +4 -0
  217. data/install_scripts/GEO/platforms/GPL737.yaml +7 -0
  218. data/install_scripts/GEO/platforms/GPL738.yaml +7 -0
  219. data/install_scripts/GEO/platforms/GPL74.yaml +4 -0
  220. data/install_scripts/GEO/platforms/GPL75.yaml +4 -0
  221. data/install_scripts/GEO/platforms/GPL76.yaml +4 -0
  222. data/install_scripts/GEO/platforms/GPL764.yaml +7 -0
  223. data/install_scripts/GEO/platforms/GPL772.yaml +7 -0
  224. data/install_scripts/GEO/platforms/GPL782.yaml +7 -0
  225. data/install_scripts/GEO/platforms/GPL783.yaml +7 -0
  226. data/install_scripts/GEO/platforms/GPL784.yaml +7 -0
  227. data/install_scripts/GEO/platforms/GPL80.yaml +4 -0
  228. data/install_scripts/GEO/platforms/GPL81.yaml +4 -0
  229. data/install_scripts/GEO/platforms/GPL82.yaml +4 -0
  230. data/install_scripts/GEO/platforms/GPL83.yaml +4 -0
  231. data/install_scripts/GEO/platforms/GPL85.yaml +4 -0
  232. data/install_scripts/GEO/platforms/GPL86.yaml +4 -0
  233. data/install_scripts/GEO/platforms/GPL87.yaml +4 -0
  234. data/install_scripts/GEO/platforms/GPL870.yaml +7 -0
  235. data/install_scripts/GEO/platforms/GPL875.yaml +7 -0
  236. data/install_scripts/GEO/platforms/GPL884.yaml +7 -0
  237. data/install_scripts/GEO/platforms/GPL887.yaml +7 -0
  238. data/install_scripts/GEO/platforms/GPL89.yaml +4 -0
  239. data/install_scripts/GEO/platforms/GPL890.yaml +7 -0
  240. data/install_scripts/GEO/platforms/GPL891.yaml +7 -0
  241. data/install_scripts/GEO/platforms/GPL90.yaml +7 -0
  242. data/install_scripts/GEO/platforms/GPL91.yaml +4 -0
  243. data/install_scripts/GEO/platforms/GPL92.yaml +4 -0
  244. data/install_scripts/GEO/platforms/GPL920.yaml +7 -0
  245. data/install_scripts/GEO/platforms/GPL922.yaml +7 -0
  246. data/install_scripts/GEO/platforms/GPL924.yaml +7 -0
  247. data/install_scripts/GEO/platforms/GPL93.yaml +4 -0
  248. data/install_scripts/GEO/platforms/GPL96.yaml +4 -0
  249. data/install_scripts/GEO/platforms/GPL968.yaml +4 -0
  250. data/install_scripts/GEO/platforms/GPL97.yaml +4 -0
  251. data/install_scripts/GEO/platforms/GPL98.yaml +7 -0
  252. data/install_scripts/GEO/platforms/GPL981.yaml +7 -0
  253. data/install_scripts/GEO/platforms/GPL99.yaml +7 -0
  254. data/install_scripts/GEO/platforms/GPL999.yaml +7 -0
  255. data/install_scripts/GEO/series/GSE10018.yaml +61 -0
  256. data/install_scripts/GEO/series/GSE1002.yaml +135 -0
  257. data/install_scripts/GEO/series/GSE10066.yaml +31 -0
  258. data/install_scripts/GEO/series/GSE10073.yaml +19 -0
  259. data/install_scripts/GEO/series/GSE10091.yaml +15 -0
  260. data/install_scripts/GEO/series/GSE101.yaml +17 -0
  261. data/install_scripts/GEO/series/GSE10100.yaml +15 -0
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  267. data/install_scripts/GEO/series/GSE103.yaml +19 -0
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  270. data/install_scripts/GEO/series/GSE10521.yaml +56 -0
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  272. data/install_scripts/GEO/series/GSE1073.yaml +127 -0
  273. data/install_scripts/GEO/series/GSE10860.yaml +25 -0
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  300. data/install_scripts/GEO/series/GSE12104.yaml +10 -0
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  302. data/install_scripts/GEO/series/GSE12150.yaml +32 -0
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  305. data/install_scripts/GEO/series/GSE1365.yaml +14 -0
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  307. data/install_scripts/GEO/series/GSE1492.yaml +15 -0
  308. data/install_scripts/GEO/series/GSE15222.yaml +731 -0
  309. data/install_scripts/GEO/series/GSE1553.yaml +23 -0
  310. data/install_scripts/GEO/series/GSE1617.yaml +39 -0
  311. data/install_scripts/GEO/series/GSE1688.yaml +36 -0
  312. data/install_scripts/GEO/series/GSE1693.yaml +60 -0
  313. data/install_scripts/GEO/series/GSE1752.yaml +32 -0
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  319. data/install_scripts/GEO/series/GSE1763.yaml +19 -0
  320. data/install_scripts/GEO/series/GSE1915.yaml +39 -0
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data/install_scripts/GEO/platforms/GPL49.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: ORF_intergenic_v1.0
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL50.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: intergenic_v1.0
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 11
6
+ - DS_GENE_1
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL500.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: MWG Rat 5K Array
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 8
6
+ - SPOT_ID
7
+ :organism: rgd
data/install_scripts/GEO/platforms/GPL507.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: isb1
3
+ :BioMart_ID: Ensembl Protein ID
4
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL51.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: y11
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL513.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Nuclear Chloroplast Transcriptome GST Macroarray
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - CLONE_ID
7
+ :organism: tair
data/install_scripts/GEO/platforms/GPL519.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: UHN Mouse 15k array
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 6
6
+ - REFSEQ
7
+ :organism: mgi
data/install_scripts/GEO/platforms/GPL52.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: y12
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL529.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: MWG Rat Liver Array
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 8
6
+ - SPOT_ID
7
+ :organism: rgd
data/install_scripts/GEO/platforms/GPL53.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: y13
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL5356.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: "Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Hs133Av2_Hs_REFSEQ_8]\r"
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 3
6
+ - GENE_SYMBOL
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL538.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Research Genetics (Invitrogen) - GF211 Microarray Filter
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 3
6
+ - cluster_id
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL54.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: y14
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL543.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Rosetta (Merck) Splicing Experiment, Chip 1 of 5
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - GENE_SYMBOL
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL544.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Rosetta (Merck) Splicing Experiment, Chip 2 of 5
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - GENE_SYMBOL
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL545.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Rosetta (Merck) Splicing Experiment, Chip 3 of 5
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 4
6
+ - EXON1
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL546.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Rosetta (Merck) Splicing Experiment, Chip 4 of 5
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - GENE_SYMBOL
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL547.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Rosetta (Merck) Splicing Experiment, Chip 5 of 5
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - GENE_SYMBOL
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL549.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: "Atlas Human Cardiovascular Array (Cat. #7734-1)\r"
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 4
6
+ - GENE
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL550.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: UNC compugen oligo array for toxgenomics study
3
+ :BioMart_ID:
4
+ :organism: human
data/install_scripts/GEO/platforms/GPL56.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: y16
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL560.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Developmental Toxicity of the Mouse Embryo (DTME)
3
+ :BioMart_ID:
4
+ :organism: mgi
data/install_scripts/GEO/platforms/GPL564.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Rosetta (Merck) Blood donor experiment
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 5
6
+ - SPOT_ID
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL57.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: y6k_6400
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL570.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Human Genome U133 Plus 2.0 Array
3
+ :BioMart_ID: AFFY HG U133-PLUS-2
4
+ :organism: human
data/install_scripts/GEO/platforms/GPL571.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Human Genome U133A 2.0 Array
3
+ :BioMart_ID: AFFY HG U133A
4
+ :organism: human
data/install_scripts/GEO/platforms/GPL576.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: UCSF elegans2b 20K array
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 4
6
+ - SPOT_ID
7
+ :organism: worm
data/install_scripts/GEO/platforms/GPL58.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :other_ID_field:
3
+ - 2
4
+ - ORF
5
+ :title: y74
6
+ :organism: sgd
7
+ :BioMart_ID:
data/install_scripts/GEO/platforms/GPL5823.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: UHN_yeast_6.4kv4
3
+ :organism: sgd
4
+ :BioMart_ID: Ensembl Gene ID
data/install_scripts/GEO/platforms/GPL59.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: y744
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL5915.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: UWAPG Yeast 6K v1.0
3
+ :organism: sgd
4
+ :BioMart_ID: Ensembl Gene ID
data/install_scripts/GEO/platforms/GPL5947.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :other_ID_field:
3
+ - 2
4
+ - ORF
5
+ :title: WashU Operon Array-Ready Yeast Oligo set (Yeast_V1.1.2)
6
+ :organism: sgd
7
+ :BioMart_ID:
data/install_scripts/GEO/platforms/GPL61.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: y80-Paul
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL64.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: y9
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL6419.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :other_ID_field:
3
+ - 8
4
+ - SEQUENCE DESCRIPTION
5
+ :title: Print_835
6
+ :organism: sgd
7
+ :BioMart_ID:
data/install_scripts/GEO/platforms/GPL6424.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :other_ID_field:
3
+ - 3
4
+ - ORF
5
+ :title: UCSF_SC_ORF_Uberp10
6
+ :organism: sgd
7
+ :BioMart_ID:
data/install_scripts/GEO/platforms/GPL65.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: yeast_384_F_v1.0
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL6574.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Histone TAG Array 06A
3
+ :organism: sgd
4
+ :BioMart_ID:
data/install_scripts/GEO/platforms/GPL6649.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: CEA Saccharomyces cerevisiae 6k Whole Genome Microarray
3
+ :organism: sgd
4
+ :BioMart_ID: Ensembl Gene ID
data/install_scripts/GEO/platforms/GPL67.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: yeast_v1_2.2
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL6720.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :other_ID_field:
3
+ - 7
4
+ - Description
5
+ :title: Agilent Saccharomyces cerevisiae array
6
+ :organism: sgd
7
+ :BioMart_ID:
data/install_scripts/GEO/platforms/GPL7054.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: yeast48canada (condensed version)
3
+ :BioMart_ID: Ensembl Protein ID
4
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL737.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Agilent Human 1A Oligo UNC_custom array
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 3
6
+ - AGI_PROBE_ID
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL738.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: NIA Mouse 17K_A
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 6
6
+ - ENTREZ_GENE
7
+ :organism: mgi
data/install_scripts/GEO/platforms/GPL74.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Human Cancer Array HC-G110
3
+ :BioMart_ID: AFFY HG U95A
4
+ :organism: human
data/install_scripts/GEO/platforms/GPL75.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Murine 11K SubA Array Mu11K-A
3
+ :BioMart_ID: Affy mu11ksuba
4
+ :organism: mgi
data/install_scripts/GEO/platforms/GPL76.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Murine 11K SubB Array Mu11K-B
3
+ :BioMart_ID: Affy mu11ksubb
4
+ :organism: mgi
data/install_scripts/GEO/platforms/GPL764.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :other_ID_field:
3
+ - 2
4
+ - GENE_LIST
5
+ :title: yeast48canada
6
+ :organism: sgd
7
+ :BioMart_ID:
data/install_scripts/GEO/platforms/GPL772.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Valencia yeast v2
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 3
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL782.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: NIA Mouse 17K_B
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 6
6
+ - ENTREZ_GENE
7
+ :organism: mgi
data/install_scripts/GEO/platforms/GPL783.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Human oligo array part I LGTC
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 3
6
+ - SPOT_ID
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL784.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Human oligo array part II LGTC
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 3
6
+ - SPOT_ID
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL80.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Human Full Length Array HuGeneFL (Hu6800)
3
+ :BioMart_ID: AFFY HUGENEFL
4
+ :organism: human
data/install_scripts/GEO/platforms/GPL81.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Murine Genome U74 Version 2 Set MG-U74A
3
+ :BioMart_ID: Affy mg u74a
4
+ :organism: mgi
data/install_scripts/GEO/platforms/GPL82.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Murine Genome U74 Version 2 Set MG-U74B
3
+ :BioMart_ID: Affy mg u74b
4
+ :organism: mgi
data/install_scripts/GEO/platforms/GPL83.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Murine Genome U74 Version 2 Set MG-U74C
3
+ :BioMart_ID: Affy mg u74cv2
4
+ :organism: mgi