xcoll 0.5.12__py3-none-any.whl → 0.6.0__py3-none-any.whl

xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_numpy_array.py

@@ -1,593 +0,0 @@
-# -*- coding: utf-8 -*-
-import pytest
-
-import env  # noqa: F401
-from pybind11_tests import numpy_array as m
-
-np = pytest.importorskip("numpy")
-
-
-def test_dtypes():
-    # See issue #1328.
-    # - Platform-dependent sizes.
-    for size_check in m.get_platform_dtype_size_checks():
-        print(size_check)
-        assert size_check.size_cpp == size_check.size_numpy, size_check
-    # - Concrete sizes.
-    for check in m.get_concrete_dtype_checks():
-        print(check)
-        assert check.numpy == check.pybind11, check
-        if check.numpy.num != check.pybind11.num:
-            print(
-                "NOTE: typenum mismatch for {}: {} != {}".format(
-                    check, check.numpy.num, check.pybind11.num
-                )
-            )
-
-
-@pytest.fixture(scope="function")
-def arr():
-    return np.array([[1, 2, 3], [4, 5, 6]], "=u2")
-
-
-def test_array_attributes():
-    a = np.array(0, "f8")
-    assert m.ndim(a) == 0
-    assert all(m.shape(a) == [])
-    assert all(m.strides(a) == [])
-    with pytest.raises(IndexError) as excinfo:
-        m.shape(a, 0)
-    assert str(excinfo.value) == "invalid axis: 0 (ndim = 0)"
-    with pytest.raises(IndexError) as excinfo:
-        m.strides(a, 0)
-    assert str(excinfo.value) == "invalid axis: 0 (ndim = 0)"
-    assert m.writeable(a)
-    assert m.size(a) == 1
-    assert m.itemsize(a) == 8
-    assert m.nbytes(a) == 8
-    assert m.owndata(a)
-
-    a = np.array([[1, 2, 3], [4, 5, 6]], "u2").view()
-    a.flags.writeable = False
-    assert m.ndim(a) == 2
-    assert all(m.shape(a) == [2, 3])
-    assert m.shape(a, 0) == 2
-    assert m.shape(a, 1) == 3
-    assert all(m.strides(a) == [6, 2])
-    assert m.strides(a, 0) == 6
-    assert m.strides(a, 1) == 2
-    with pytest.raises(IndexError) as excinfo:
-        m.shape(a, 2)
-    assert str(excinfo.value) == "invalid axis: 2 (ndim = 2)"
-    with pytest.raises(IndexError) as excinfo:
-        m.strides(a, 2)
-    assert str(excinfo.value) == "invalid axis: 2 (ndim = 2)"
-    assert not m.writeable(a)
-    assert m.size(a) == 6
-    assert m.itemsize(a) == 2
-    assert m.nbytes(a) == 12
-    assert not m.owndata(a)
-
-
-@pytest.mark.parametrize(
-    "args, ret", [([], 0), ([0], 0), ([1], 3), ([0, 1], 1), ([1, 2], 5)]
-)
-def test_index_offset(arr, args, ret):
-    assert m.index_at(arr, *args) == ret
-    assert m.index_at_t(arr, *args) == ret
-    assert m.offset_at(arr, *args) == ret * arr.dtype.itemsize
-    assert m.offset_at_t(arr, *args) == ret * arr.dtype.itemsize
-
-
-def test_dim_check_fail(arr):
-    for func in (
-        m.index_at,
-        m.index_at_t,
-        m.offset_at,
-        m.offset_at_t,
-        m.data,
-        m.data_t,
-        m.mutate_data,
-        m.mutate_data_t,
-    ):
-        with pytest.raises(IndexError) as excinfo:
-            func(arr, 1, 2, 3)
-        assert str(excinfo.value) == "too many indices for an array: 3 (ndim = 2)"
-
-
-@pytest.mark.parametrize(
-    "args, ret",
-    [
-        ([], [1, 2, 3, 4, 5, 6]),
-        ([1], [4, 5, 6]),
-        ([0, 1], [2, 3, 4, 5, 6]),
-        ([1, 2], [6]),
-    ],
-)
-def test_data(arr, args, ret):
-    from sys import byteorder
-
-    assert all(m.data_t(arr, *args) == ret)
-    assert all(m.data(arr, *args)[(0 if byteorder == "little" else 1) :: 2] == ret)
-    assert all(m.data(arr, *args)[(1 if byteorder == "little" else 0) :: 2] == 0)
-
-
-@pytest.mark.parametrize("dim", [0, 1, 3])
-def test_at_fail(arr, dim):
-    for func in m.at_t, m.mutate_at_t:
-        with pytest.raises(IndexError) as excinfo:
-            func(arr, *([0] * dim))
-        assert str(excinfo.value) == "index dimension mismatch: {} (ndim = 2)".format(
-            dim
-        )
-
-
-def test_at(arr):
-    assert m.at_t(arr, 0, 2) == 3
-    assert m.at_t(arr, 1, 0) == 4
-
-    assert all(m.mutate_at_t(arr, 0, 2).ravel() == [1, 2, 4, 4, 5, 6])
-    assert all(m.mutate_at_t(arr, 1, 0).ravel() == [1, 2, 4, 5, 5, 6])
-
-
-def test_mutate_readonly(arr):
-    arr.flags.writeable = False
-    for func, args in (
-        (m.mutate_data, ()),
-        (m.mutate_data_t, ()),
-        (m.mutate_at_t, (0, 0)),
-    ):
-        with pytest.raises(ValueError) as excinfo:
-            func(arr, *args)
-        assert str(excinfo.value) == "array is not writeable"
-
-
-def test_mutate_data(arr):
-    assert all(m.mutate_data(arr).ravel() == [2, 4, 6, 8, 10, 12])
-    assert all(m.mutate_data(arr).ravel() == [4, 8, 12, 16, 20, 24])
-    assert all(m.mutate_data(arr, 1).ravel() == [4, 8, 12, 32, 40, 48])
-    assert all(m.mutate_data(arr, 0, 1).ravel() == [4, 16, 24, 64, 80, 96])
-    assert all(m.mutate_data(arr, 1, 2).ravel() == [4, 16, 24, 64, 80, 192])
-
-    assert all(m.mutate_data_t(arr).ravel() == [5, 17, 25, 65, 81, 193])
-    assert all(m.mutate_data_t(arr).ravel() == [6, 18, 26, 66, 82, 194])
-    assert all(m.mutate_data_t(arr, 1).ravel() == [6, 18, 26, 67, 83, 195])
-    assert all(m.mutate_data_t(arr, 0, 1).ravel() == [6, 19, 27, 68, 84, 196])
-    assert all(m.mutate_data_t(arr, 1, 2).ravel() == [6, 19, 27, 68, 84, 197])
-
-
-def test_bounds_check(arr):
-    for func in (
-        m.index_at,
-        m.index_at_t,
-        m.data,
-        m.data_t,
-        m.mutate_data,
-        m.mutate_data_t,
-        m.at_t,
-        m.mutate_at_t,
-    ):
-        with pytest.raises(IndexError) as excinfo:
-            func(arr, 2, 0)
-        assert str(excinfo.value) == "index 2 is out of bounds for axis 0 with size 2"
-        with pytest.raises(IndexError) as excinfo:
-            func(arr, 0, 4)
-        assert str(excinfo.value) == "index 4 is out of bounds for axis 1 with size 3"
-
-
-def test_make_c_f_array():
-    assert m.make_c_array().flags.c_contiguous
-    assert not m.make_c_array().flags.f_contiguous
-    assert m.make_f_array().flags.f_contiguous
-    assert not m.make_f_array().flags.c_contiguous
-
-
-def test_make_empty_shaped_array():
-    m.make_empty_shaped_array()
-
-    # empty shape means numpy scalar, PEP 3118
-    assert m.scalar_int().ndim == 0
-    assert m.scalar_int().shape == ()
-    assert m.scalar_int() == 42
-
-
-def test_wrap():
-    def assert_references(a, b, base=None):
-        from distutils.version import LooseVersion
-
-        if base is None:
-            base = a
-        assert a is not b
-        assert a.__array_interface__["data"][0] == b.__array_interface__["data"][0]
-        assert a.shape == b.shape
-        assert a.strides == b.strides
-        assert a.flags.c_contiguous == b.flags.c_contiguous
-        assert a.flags.f_contiguous == b.flags.f_contiguous
-        assert a.flags.writeable == b.flags.writeable
-        assert a.flags.aligned == b.flags.aligned
-        if LooseVersion(np.__version__) >= LooseVersion("1.14.0"):
-            assert a.flags.writebackifcopy == b.flags.writebackifcopy
-        else:
-            assert a.flags.updateifcopy == b.flags.updateifcopy
-        assert np.all(a == b)
-        assert not b.flags.owndata
-        assert b.base is base
-        if a.flags.writeable and a.ndim == 2:
-            a[0, 0] = 1234
-            assert b[0, 0] == 1234
-
-    a1 = np.array([1, 2], dtype=np.int16)
-    assert a1.flags.owndata and a1.base is None
-    a2 = m.wrap(a1)
-    assert_references(a1, a2)
-
-    a1 = np.array([[1, 2], [3, 4]], dtype=np.float32, order="F")
-    assert a1.flags.owndata and a1.base is None
-    a2 = m.wrap(a1)
-    assert_references(a1, a2)
-
-    a1 = np.array([[1, 2], [3, 4]], dtype=np.float32, order="C")
-    a1.flags.writeable = False
-    a2 = m.wrap(a1)
-    assert_references(a1, a2)
-
-    a1 = np.random.random((4, 4, 4))
-    a2 = m.wrap(a1)
-    assert_references(a1, a2)
-
-    a1t = a1.transpose()
-    a2 = m.wrap(a1t)
-    assert_references(a1t, a2, a1)
-
-    a1d = a1.diagonal()
-    a2 = m.wrap(a1d)
-    assert_references(a1d, a2, a1)
-
-    a1m = a1[::-1, ::-1, ::-1]
-    a2 = m.wrap(a1m)
-    assert_references(a1m, a2, a1)
-
-
-def test_numpy_view(capture):
-    with capture:
-        ac = m.ArrayClass()
-        ac_view_1 = ac.numpy_view()
-        ac_view_2 = ac.numpy_view()
-        assert np.all(ac_view_1 == np.array([1, 2], dtype=np.int32))
-        del ac
-        pytest.gc_collect()
-    assert (
-        capture
-        == """
-        ArrayClass()
-        ArrayClass::numpy_view()
-        ArrayClass::numpy_view()
-    """
-    )
-    ac_view_1[0] = 4
-    ac_view_1[1] = 3
-    assert ac_view_2[0] == 4
-    assert ac_view_2[1] == 3
-    with capture:
-        del ac_view_1
-        del ac_view_2
-        pytest.gc_collect()
-        pytest.gc_collect()
-    assert (
-        capture
-        == """
-        ~ArrayClass()
-    """
-    )
-
-
-def test_cast_numpy_int64_to_uint64():
-    m.function_taking_uint64(123)
-    m.function_taking_uint64(np.uint64(123))
-
-
-def test_isinstance():
-    assert m.isinstance_untyped(np.array([1, 2, 3]), "not an array")
-    assert m.isinstance_typed(np.array([1.0, 2.0, 3.0]))
-
-
-def test_constructors():
-    defaults = m.default_constructors()
-    for a in defaults.values():
-        assert a.size == 0
-    assert defaults["array"].dtype == np.array([]).dtype
-    assert defaults["array_t<int32>"].dtype == np.int32
-    assert defaults["array_t<double>"].dtype == np.float64
-
-    results = m.converting_constructors([1, 2, 3])
-    for a in results.values():
-        np.testing.assert_array_equal(a, [1, 2, 3])
-    assert results["array"].dtype == np.int_
-    assert results["array_t<int32>"].dtype == np.int32
-    assert results["array_t<double>"].dtype == np.float64
-
-
-def test_overload_resolution(msg):
-    # Exact overload matches:
-    assert m.overloaded(np.array([1], dtype="float64")) == "double"
-    assert m.overloaded(np.array([1], dtype="float32")) == "float"
-    assert m.overloaded(np.array([1], dtype="ushort")) == "unsigned short"
-    assert m.overloaded(np.array([1], dtype="intc")) == "int"
-    assert m.overloaded(np.array([1], dtype="longlong")) == "long long"
-    assert m.overloaded(np.array([1], dtype="complex")) == "double complex"
-    assert m.overloaded(np.array([1], dtype="csingle")) == "float complex"
-
-    # No exact match, should call first convertible version:
-    assert m.overloaded(np.array([1], dtype="uint8")) == "double"
-
-    with pytest.raises(TypeError) as excinfo:
-        m.overloaded("not an array")
-    assert (
-        msg(excinfo.value)
-        == """
-        overloaded(): incompatible function arguments. The following argument types are supported:
-            1. (arg0: numpy.ndarray[numpy.float64]) -> str
-            2. (arg0: numpy.ndarray[numpy.float32]) -> str
-            3. (arg0: numpy.ndarray[numpy.int32]) -> str
-            4. (arg0: numpy.ndarray[numpy.uint16]) -> str
-            5. (arg0: numpy.ndarray[numpy.int64]) -> str
-            6. (arg0: numpy.ndarray[numpy.complex128]) -> str
-            7. (arg0: numpy.ndarray[numpy.complex64]) -> str
-
-        Invoked with: 'not an array'
-    """
-    )
-
-    assert m.overloaded2(np.array([1], dtype="float64")) == "double"
-    assert m.overloaded2(np.array([1], dtype="float32")) == "float"
-    assert m.overloaded2(np.array([1], dtype="complex64")) == "float complex"
-    assert m.overloaded2(np.array([1], dtype="complex128")) == "double complex"
-    assert m.overloaded2(np.array([1], dtype="float32")) == "float"
-
-    assert m.overloaded3(np.array([1], dtype="float64")) == "double"
-    assert m.overloaded3(np.array([1], dtype="intc")) == "int"
-    expected_exc = """
-        overloaded3(): incompatible function arguments. The following argument types are supported:
-            1. (arg0: numpy.ndarray[numpy.int32]) -> str
-            2. (arg0: numpy.ndarray[numpy.float64]) -> str
-
-        Invoked with: """
-
-    with pytest.raises(TypeError) as excinfo:
-        m.overloaded3(np.array([1], dtype="uintc"))
-    assert msg(excinfo.value) == expected_exc + repr(np.array([1], dtype="uint32"))
-    with pytest.raises(TypeError) as excinfo:
-        m.overloaded3(np.array([1], dtype="float32"))
-    assert msg(excinfo.value) == expected_exc + repr(np.array([1.0], dtype="float32"))
-    with pytest.raises(TypeError) as excinfo:
-        m.overloaded3(np.array([1], dtype="complex"))
-    assert msg(excinfo.value) == expected_exc + repr(np.array([1.0 + 0.0j]))
-
-    # Exact matches:
-    assert m.overloaded4(np.array([1], dtype="double")) == "double"
-    assert m.overloaded4(np.array([1], dtype="longlong")) == "long long"
-    # Non-exact matches requiring conversion.  Since float to integer isn't a
-    # save conversion, it should go to the double overload, but short can go to
-    # either (and so should end up on the first-registered, the long long).
-    assert m.overloaded4(np.array([1], dtype="float32")) == "double"
-    assert m.overloaded4(np.array([1], dtype="short")) == "long long"
-
-    assert m.overloaded5(np.array([1], dtype="double")) == "double"
-    assert m.overloaded5(np.array([1], dtype="uintc")) == "unsigned int"
-    assert m.overloaded5(np.array([1], dtype="float32")) == "unsigned int"
-
-
-def test_greedy_string_overload():
-    """Tests fix for #685 - ndarray shouldn't go to std::string overload"""
-
-    assert m.issue685("abc") == "string"
-    assert m.issue685(np.array([97, 98, 99], dtype="b")) == "array"
-    assert m.issue685(123) == "other"
-
-
-def test_array_unchecked_fixed_dims(msg):
-    z1 = np.array([[1, 2], [3, 4]], dtype="float64")
-    m.proxy_add2(z1, 10)
-    assert np.all(z1 == [[11, 12], [13, 14]])
-
-    with pytest.raises(ValueError) as excinfo:
-        m.proxy_add2(np.array([1.0, 2, 3]), 5.0)
-    assert (
-        msg(excinfo.value) == "array has incorrect number of dimensions: 1; expected 2"
-    )
-
-    expect_c = np.ndarray(shape=(3, 3, 3), buffer=np.array(range(3, 30)), dtype="int")
-    assert np.all(m.proxy_init3(3.0) == expect_c)
-    expect_f = np.transpose(expect_c)
-    assert np.all(m.proxy_init3F(3.0) == expect_f)
-
-    assert m.proxy_squared_L2_norm(np.array(range(6))) == 55
-    assert m.proxy_squared_L2_norm(np.array(range(6), dtype="float64")) == 55
-
-    assert m.proxy_auxiliaries2(z1) == [11, 11, True, 2, 8, 2, 2, 4, 32]
-    assert m.proxy_auxiliaries2(z1) == m.array_auxiliaries2(z1)
-
-    assert m.proxy_auxiliaries1_const_ref(z1[0, :])
-    assert m.proxy_auxiliaries2_const_ref(z1)
-
-
-def test_array_unchecked_dyn_dims():
-    z1 = np.array([[1, 2], [3, 4]], dtype="float64")
-    m.proxy_add2_dyn(z1, 10)
-    assert np.all(z1 == [[11, 12], [13, 14]])
-
-    expect_c = np.ndarray(shape=(3, 3, 3), buffer=np.array(range(3, 30)), dtype="int")
-    assert np.all(m.proxy_init3_dyn(3.0) == expect_c)
-
-    assert m.proxy_auxiliaries2_dyn(z1) == [11, 11, True, 2, 8, 2, 2, 4, 32]
-    assert m.proxy_auxiliaries2_dyn(z1) == m.array_auxiliaries2(z1)
-
-
-def test_array_failure():
-    with pytest.raises(ValueError) as excinfo:
-        m.array_fail_test()
-    assert str(excinfo.value) == "cannot create a pybind11::array from a nullptr"
-
-    with pytest.raises(ValueError) as excinfo:
-        m.array_t_fail_test()
-    assert str(excinfo.value) == "cannot create a pybind11::array_t from a nullptr"
-
-    with pytest.raises(ValueError) as excinfo:
-        m.array_fail_test_negative_size()
-    assert str(excinfo.value) == "negative dimensions are not allowed"
-
-
-def test_initializer_list():
-    assert m.array_initializer_list1().shape == (1,)
-    assert m.array_initializer_list2().shape == (1, 2)
-    assert m.array_initializer_list3().shape == (1, 2, 3)
-    assert m.array_initializer_list4().shape == (1, 2, 3, 4)
-
-
-def test_array_resize():
-    a = np.array([1, 2, 3, 4, 5, 6, 7, 8, 9], dtype="float64")
-    m.array_reshape2(a)
-    assert a.size == 9
-    assert np.all(a == [[1, 2, 3], [4, 5, 6], [7, 8, 9]])
-
-    # total size change should succced with refcheck off
-    m.array_resize3(a, 4, False)
-    assert a.size == 64
-    # ... and fail with refcheck on
-    try:
-        m.array_resize3(a, 3, True)
-    except ValueError as e:
-        assert str(e).startswith("cannot resize an array")
-    # transposed array doesn't own data
-    b = a.transpose()
-    try:
-        m.array_resize3(b, 3, False)
-    except ValueError as e:
-        assert str(e).startswith("cannot resize this array: it does not own its data")
-    # ... but reshape should be fine
-    m.array_reshape2(b)
-    assert b.shape == (8, 8)
-
-
-@pytest.mark.xfail("env.PYPY")
-def test_array_create_and_resize():
-    a = m.create_and_resize(2)
-    assert a.size == 4
-    assert np.all(a == 42.0)
-
-
-def test_array_view():
-    a = np.ones(100 * 4).astype("uint8")
-    a_float_view = m.array_view(a, "float32")
-    assert a_float_view.shape == (100 * 1,)  # 1 / 4 bytes = 8 / 32
-
-    a_int16_view = m.array_view(a, "int16")  # 1 / 2 bytes = 16 / 32
-    assert a_int16_view.shape == (100 * 2,)
-
-
-def test_array_view_invalid():
-    a = np.ones(100 * 4).astype("uint8")
-    with pytest.raises(TypeError):
-        m.array_view(a, "deadly_dtype")
-
-
-def test_reshape_initializer_list():
-    a = np.arange(2 * 7 * 3) + 1
-    x = m.reshape_initializer_list(a, 2, 7, 3)
-    assert x.shape == (2, 7, 3)
-    assert list(x[1][4]) == [34, 35, 36]
-    with pytest.raises(ValueError) as excinfo:
-        m.reshape_initializer_list(a, 1, 7, 3)
-    assert str(excinfo.value) == "cannot reshape array of size 42 into shape (1,7,3)"
-
-
-def test_reshape_tuple():
-    a = np.arange(3 * 7 * 2) + 1
-    x = m.reshape_tuple(a, (3, 7, 2))
-    assert x.shape == (3, 7, 2)
-    assert list(x[1][4]) == [23, 24]
-    y = m.reshape_tuple(x, (x.size,))
-    assert y.shape == (42,)
-    with pytest.raises(ValueError) as excinfo:
-        m.reshape_tuple(a, (3, 7, 1))
-    assert str(excinfo.value) == "cannot reshape array of size 42 into shape (3,7,1)"
-    with pytest.raises(ValueError) as excinfo:
-        m.reshape_tuple(a, ())
-    assert str(excinfo.value) == "cannot reshape array of size 42 into shape ()"
-
-
-def test_index_using_ellipsis():
-    a = m.index_using_ellipsis(np.zeros((5, 6, 7)))
-    assert a.shape == (6,)
-
-
-@pytest.mark.parametrize(
-    "test_func",
-    [
-        m.test_fmt_desc_float,
-        m.test_fmt_desc_double,
-        m.test_fmt_desc_const_float,
-        m.test_fmt_desc_const_double,
-    ],
-)
-def test_format_descriptors_for_floating_point_types(test_func):
-    assert "numpy.ndarray[numpy.float" in test_func.__doc__
-
-
-@pytest.mark.parametrize("forcecast", [False, True])
-@pytest.mark.parametrize("contiguity", [None, "C", "F"])
-@pytest.mark.parametrize("noconvert", [False, True])
-@pytest.mark.filterwarnings(
-    "ignore:Casting complex values to real discards the imaginary part:numpy.ComplexWarning"
-)
-def test_argument_conversions(forcecast, contiguity, noconvert):
-    function_name = "accept_double"
-    if contiguity == "C":
-        function_name += "_c_style"
-    elif contiguity == "F":
-        function_name += "_f_style"
-    if forcecast:
-        function_name += "_forcecast"
-    if noconvert:
-        function_name += "_noconvert"
-    function = getattr(m, function_name)
-
-    for dtype in [np.dtype("float32"), np.dtype("float64"), np.dtype("complex128")]:
-        for order in ["C", "F"]:
-            for shape in [(2, 2), (1, 3, 1, 1), (1, 1, 1), (0,)]:
-                if not noconvert:
-                    # If noconvert is not passed, only complex128 needs to be truncated and
-                    # "cannot be safely obtained". So without `forcecast`, the argument shouldn't
-                    # be accepted.
-                    should_raise = dtype.name == "complex128" and not forcecast
-                else:
-                    # If noconvert is passed, only float64 and the matching order is accepted.
-                    # If at most one dimension has a size greater than 1, the array is also
-                    # trivially contiguous.
-                    trivially_contiguous = sum(1 for d in shape if d > 1) <= 1
-                    should_raise = dtype.name != "float64" or (
-                        contiguity is not None
-                        and contiguity != order
-                        and not trivially_contiguous
-                    )
-
-                array = np.zeros(shape, dtype=dtype, order=order)
-                if not should_raise:
-                    function(array)
-                else:
-                    with pytest.raises(
-                        TypeError, match="incompatible function arguments"
-                    ):
-                        function(array)
-
-
-@pytest.mark.xfail("env.PYPY")
-def test_dtype_refcount_leak():
-    from sys import getrefcount
-
-    dtype = np.dtype(np.float_)
-    a = np.array([1], dtype=dtype)
-    before = getrefcount(dtype)
-    m.ndim(a)
-    after = getrefcount(dtype)
-    assert after == before