xcoll 0.5.12__py3-none-any.whl → 0.6.0__py3-none-any.whl

xcoll/scattering_routines/geant4/collimasim/.gitignore

@@ -1,12 +0,0 @@
-*.pyc
-*.egg-info/
-*.so
-*.o
-*~
-#*#
-.#*
-.DS_Store
-.idea
-.vscode
-build
-cmake-build*

xcoll/scattering_routines/geant4/collimasim/.gitmodules

@@ -1,3 +0,0 @@
-[submodule "pybind11"]
-	path = lib/pybind11
-	url = https://github.com/pybind/pybind11.git

xcoll/scattering_routines/geant4/collimasim/CMakeLists.txt

@@ -1,26 +0,0 @@
-cmake_minimum_required(VERSION 3.17)
-SET(CMAKE_BUILD_TYPE Debug)
-set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -g -O0")
-
-project(g4interface)
-
-add_subdirectory(lib/pybind11)
-
-set(SOURCE_DIR "src/collimasim")
-
-# The headers are in the source directory
-include_directories(${SOURCE_DIR})
-
-set(SOURCES ${SOURCE_DIR}/BDSPyATInterface.cpp
-            ${SOURCE_DIR}/BDSXtrackInterface.cpp
-            ${SOURCE_DIR}/BDSPyATInterface.hh
-            ${SOURCE_DIR}/BDSXtrackInterface.hh
-            ${SOURCE_DIR}/bindings.cpp)
-
-find_package(BDSIM REQUIRED HINTS $ENV{BDSIM})
-
-pybind11_add_module(g4interface ${SOURCES} "${SOURCE_DIR}/bindings.cpp")
-
-
-target_link_libraries(g4interface PRIVATE ${BDSIM_LIBRARIES})
-target_include_directories(g4interface PUBLIC ${BDSIM_INCLUDE_DIR})

xcoll/scattering_routines/geant4/collimasim/README.md

@@ -1,21 +0,0 @@
-# Collimasim
-
-Collimasim provides Python bindings to BDSIM (Geant4) in order to enable collimation studies in pure tracking codes
-
-## Requiremends
- - BDSIM installed on the system
- - python3
- - CMake >3.17
-
-## Installation
-
-To isntall use:
-
-```bash
-git clone --recurse-submodules https://gitlab.cern.ch/anabramo/collimasim.git
-python -m pip install --user --editable ./
-```
-
-## Usage
-
-See tests/test.py for an example of how to use

xcoll/scattering_routines/geant4/collimasim/docs/Makefile

@@ -1,20 +0,0 @@
-# Minimal makefile for Sphinx documentation
-#
-
-# You can set these variables from the command line, and also
-# from the environment for the first two.
-SPHINXOPTS    ?=
-SPHINXBUILD   ?= sphinx-build
-SOURCEDIR     = source
-BUILDDIR      = build
-
-# Put it first so that "make" without argument is like "make help".
-help:
-	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
-
-.PHONY: help Makefile
-
-# Catch-all target: route all unknown targets to Sphinx using the new
-# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
-%: Makefile
-	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)

xcoll/scattering_routines/geant4/collimasim/docs/make.bat

@@ -1,35 +0,0 @@
-@ECHO OFF
-
-pushd %~dp0
-
-REM Command file for Sphinx documentation
-
-if "%SPHINXBUILD%" == "" (
-	set SPHINXBUILD=sphinx-build
-)
-set SOURCEDIR=source
-set BUILDDIR=build
-
-if "%1" == "" goto help
-
-%SPHINXBUILD% >NUL 2>NUL
-if errorlevel 9009 (
-	echo.
-	echo.The 'sphinx-build' command was not found. Make sure you have Sphinx
-	echo.installed, then set the SPHINXBUILD environment variable to point
-	echo.to the full path of the 'sphinx-build' executable. Alternatively you
-	echo.may add the Sphinx directory to PATH.
-	echo.
-	echo.If you don't have Sphinx installed, grab it from
-	echo.http://sphinx-doc.org/
-	exit /b 1
-)
-
-%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
-goto end
-
-:help
-%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
-
-:end
-popd

xcoll/scattering_routines/geant4/collimasim/docs/source/collimasim.rst

@@ -1,10 +0,0 @@
-.. _collimasim:
-
-==============
- Collimasim
-==============
-
-.. automodule:: pyflusix
-    :members:
-    :undoc-members:
-    :show-inheritance:

xcoll/scattering_routines/geant4/collimasim/docs/source/conf.py

@@ -1,59 +0,0 @@
-# Configuration file for the Sphinx documentation builder.
-#
-# This file only contains a selection of the most common options. For a full
-# list see the documentation:
-# https://www.sphinx-doc.org/en/master/usage/configuration.html
-
-# -- Path setup --------------------------------------------------------------
-
-# If extensions (or modules to document with autodoc) are in another directory,
-# add these directories to sys.path here. If the directory is relative to the
-# documentation root, use os.path.abspath to make it absolute, like shown here.
-#
-# import os
-# import sys
-# sys.path.insert(0, os.path.abspath('.'))
-
-
-# -- Project information -----------------------------------------------------
-
-project = 'collimasim'
-copyright = '2021, Andrey Abramov, Laurie Nevay'
-author = 'Andrey Abramov, Laurie Nevay'
-
-# The full version, including alpha/beta/rc tags
-release = '0.0.1'
-
-
-# -- General configuration ---------------------------------------------------
-
-# Add any Sphinx extension module names here, as strings. They can be
-# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
-# ones.
-extensions = [
-    'sphinx.ext.todo',
-    'sphinx.ext.viewcode',
-    'sphinx.ext.autodoc',
-    "sphinx_rtd_theme",
-]
-
-# Add any paths that contain templates here, relative to this directory.
-templates_path = ['_templates']
-
-# List of patterns, relative to source directory, that match files and
-# directories to ignore when looking for source files.
-# This pattern also affects html_static_path and html_extra_path.
-exclude_patterns = []
-
-
-# -- Options for HTML output -------------------------------------------------
-
-# The theme to use for HTML and HTML Help pages.  See the documentation for
-# a list of builtin themes.
-#
-html_theme = 'sphinx_rtd_theme'
-
-# Add any paths that contain custom static files (such as style sheets) here,
-# relative to this directory. They are copied after the builtin static files,
-# so a file named "default.css" will overwrite the builtin "default.css".
-html_static_path = ['_static']

xcoll/scattering_routines/geant4/collimasim/docs/source/index.rst

@@ -1,26 +0,0 @@
-.. collimasim documentation master file, created by
-   sphinx-quickstart on Fri Jul 23 14:56:04 2021.
-   You can adapt this file completely to your liking, but it should at least
-   contain the root `toctree` directive.
-
-Welcome to collimasim's documentation!
-======================================
-
-Collimasim provides Python bindings to BDSIM (Geant4) in order to enable collimation studies in pure tracking codes.
-
-Several magical fairies have been contacted about writing the documentation. It is expected to appear here shortly.
-
-.. toctree::
-   :maxdepth: 2
-   :caption: Contents:
-
-   collimasim
-
-..
-  Indices and tables
-  ==================
-..  
-  * :ref:`genindex`
-  * :ref:`modindex`
-  * :ref:`search`
-  

xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.appveyor.yml

@@ -1,37 +0,0 @@
-version: 1.0.{build}
-image:
-- Visual Studio 2015
-test: off
-skip_branch_with_pr: true
-build:
-  parallel: true
-platform:
-- x86
-environment:
-  matrix:
-  - PYTHON: 36
-    CONFIG: Debug
-  - PYTHON: 27
-    CONFIG: Debug
-install:
-- ps: |
-    $env:CMAKE_GENERATOR = "Visual Studio 14 2015"
-    if ($env:PLATFORM -eq "x64") { $env:PYTHON = "$env:PYTHON-x64" }
-    $env:PATH = "C:\Python$env:PYTHON\;C:\Python$env:PYTHON\Scripts\;$env:PATH"
-    python -W ignore -m pip install --upgrade pip wheel
-    python -W ignore -m pip install pytest numpy --no-warn-script-location pytest-timeout
-- ps: |
-    Start-FileDownload 'https://gitlab.com/libeigen/eigen/-/archive/3.3.7/eigen-3.3.7.zip'
-    7z x eigen-3.3.7.zip -y > $null
-    $env:CMAKE_INCLUDE_PATH = "eigen-3.3.7;$env:CMAKE_INCLUDE_PATH"
-build_script:
-- cmake -G "%CMAKE_GENERATOR%" -A "%CMAKE_ARCH%"
-    -DCMAKE_CXX_STANDARD=14
-    -DPYBIND11_WERROR=ON
-    -DDOWNLOAD_CATCH=ON
-    -DCMAKE_SUPPRESS_REGENERATION=1
-    .
-- set MSBuildLogger="C:\Program Files\AppVeyor\BuildAgent\Appveyor.MSBuildLogger.dll"
-- cmake --build . --config %CONFIG% --target pytest -- /m /v:m /logger:%MSBuildLogger%
-- cmake --build . --config %CONFIG% --target cpptest -- /m /v:m /logger:%MSBuildLogger%
-on_failure: if exist "tests\test_cmake_build" type tests\test_cmake_build\*.log*

xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.clang-format

@@ -1,19 +0,0 @@
----
-# See all possible options and defaults with:
-# clang-format --style=llvm --dump-config
-BasedOnStyle: LLVM
-AccessModifierOffset: -4
-AlwaysBreakTemplateDeclarations: Yes
-BinPackArguments: false
-BinPackParameters: false
-BreakBeforeBinaryOperators: All
-BreakConstructorInitializers: BeforeColon
-ColumnLimit: 99
-IndentCaseLabels: true
-IndentPPDirectives: AfterHash
-IndentWidth: 4
-Language: Cpp
-SpaceAfterCStyleCast: true
-Standard: Cpp11
-TabWidth: 4
-...

xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.clang-tidy

@@ -1,65 +0,0 @@
-FormatStyle: file
-
-Checks: '
-*bugprone*,
-cppcoreguidelines-init-variables,
-cppcoreguidelines-slicing,
-clang-analyzer-optin.cplusplus.VirtualCall,
-google-explicit-constructor,
-llvm-namespace-comment,
-misc-misplaced-const,
-misc-non-copyable-objects,
-misc-static-assert,
-misc-throw-by-value-catch-by-reference,
-misc-uniqueptr-reset-release,
-misc-unused-parameters,
-modernize-avoid-bind,
-modernize-make-shared,
-modernize-redundant-void-arg,
-modernize-replace-auto-ptr,
-modernize-replace-disallow-copy-and-assign-macro,
-modernize-replace-random-shuffle,
-modernize-shrink-to-fit,
-modernize-use-auto,
-modernize-use-bool-literals,
-modernize-use-equals-default,
-modernize-use-equals-delete,
-modernize-use-default-member-init,
-modernize-use-noexcept,
-modernize-use-emplace,
-modernize-use-override,
-modernize-use-using,
-*performance*,
-readability-avoid-const-params-in-decls,
-readability-const-return-type,
-readability-container-size-empty,
-readability-delete-null-pointer,
-readability-else-after-return,
-readability-implicit-bool-conversion,
-readability-make-member-function-const,
-readability-misplaced-array-index,
-readability-non-const-parameter,
-readability-redundant-function-ptr-dereference,
-readability-redundant-smartptr-get,
-readability-redundant-string-cstr,
-readability-simplify-subscript-expr,
-readability-static-accessed-through-instance,
-readability-static-definition-in-anonymous-namespace,
-readability-string-compare,
-readability-uniqueptr-delete-release,
--bugprone-exception-escape,
--bugprone-reserved-identifier,
--bugprone-unused-raii,
-'
-
-CheckOptions:
-- key:             performance-for-range-copy.WarnOnAllAutoCopies
-  value:           true
-- key:             performance-unnecessary-value-param.AllowedTypes
-  value:           'exception_ptr$;'
-- key:             readability-implicit-bool-conversion.AllowPointerConditions
-  value:           true
-
-HeaderFilterRegex: 'pybind11/.*h'
-
-WarningsAsErrors: '*'

xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.cmake-format.yaml

@@ -1,73 +0,0 @@
-parse:
-  additional_commands:
-    pybind11_add_module:
-      flags:
-        - THIN_LTO
-        - MODULE
-        - SHARED
-        - NO_EXTRAS
-        - EXCLUDE_FROM_ALL
-        - SYSTEM
-
-format:
-  line_width: 99
-  tab_size: 2
-
-  # If an argument group contains more than this many sub-groups
-  # (parg or kwarg groups) then force it to a vertical layout.
-  max_subgroups_hwrap: 2
-
-  # If a positional argument group contains more than this many
-  # arguments, then force it to a vertical layout.
-  max_pargs_hwrap: 6
-
-  # If a cmdline positional group consumes more than this many
-  # lines without nesting, then invalidate the layout (and nest)
-  max_rows_cmdline: 2
-  separate_ctrl_name_with_space: false
-  separate_fn_name_with_space: false
-  dangle_parens: false
-
-  # If the trailing parenthesis must be 'dangled' on its on
-  # 'line, then align it to this reference: `prefix`: the start'
-  # 'of the statement,  `prefix-indent`: the start of the'
-  # 'statement, plus one indentation  level, `child`: align to'
-  # the column of the arguments
-  dangle_align: prefix
-  # If the statement spelling length (including space and
-  # parenthesis) is smaller than this amount, then force reject
-  # nested layouts.
-  min_prefix_chars: 4
-
-  # If the statement spelling length (including space and
-  # parenthesis) is larger than the tab width by more than this
-  # amount, then force reject un-nested layouts.
-  max_prefix_chars: 10
-
-  # If a candidate layout is wrapped horizontally but it exceeds
-  # this many lines, then reject the layout.
-  max_lines_hwrap: 2
-
-  line_ending: unix
-
-  # Format command names consistently as 'lower' or 'upper' case
-  command_case: canonical
-
-  # Format keywords consistently as 'lower' or 'upper' case
-  # unchanged is valid too
-  keyword_case: 'upper'
-
-  # A list of command names which should always be wrapped
-  always_wrap: []
-
-  # If true, the argument lists which are known to be sortable
-  # will be sorted lexicographically
-  enable_sort: true
-
-  # If true, the parsers may infer whether or not an argument
-  # list is sortable (without annotation).
-  autosort: false
-
-# Causes a few issues - can be solved later, possibly.
-markup:
-  enable_markup: false

xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.git

@@ -1 +0,0 @@
-gitdir: ../../../../../../.git/modules/xcoll/scattering_routines/geant4/collimasim/modules/pybind11

xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/CODEOWNERS

@@ -1,9 +0,0 @@
-*.cmake @henryiii
-CMakeLists.txt @henryiii
-*.yml @henryiii
-*.yaml @henryiii
-/tools/ @henryiii
-/pybind11/ @henryiii
-noxfile.py @henryiii
-.clang-format @henryiii
-.clang-tidy @henryiii