tomwer 1.3.27__py3-none-any.whl → 1.4.0rc0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- orangecontrib/tomwer/orange/managedprocess.py +1 -29
- orangecontrib/tomwer/orange/settings.py +2 -28
- orangecontrib/tomwer/tests/TestAcquisition.py +220 -0
- orangecontrib/tomwer/tutorials/append_raw_darks_and_flats_frames_to_NXtomos.ows +2 -2
- orangecontrib/tomwer/tutorials/copy_reduced_darks_and_flats_meth1.ows +1 -1
- orangecontrib/tomwer/tutorials/{icat_publication.ows → drac_publication.ows} +7 -21
- orangecontrib/tomwer/tutorials/id16b/ID16b_full_volume.ows +22 -0
- orangecontrib/tomwer/tutorials/id16b/ID16b_insitu.ows +302 -0
- orangecontrib/tomwer/tutorials/id16b/ID16b_normalization.ows +218 -0
- orangecontrib/tomwer/tutorials/simple_volume_to_slurm_reconstruction.ows +29 -24
- orangecontrib/tomwer/tutorials/test_cor.ows +19 -0
- orangecontrib/tomwer/tutorials/volume_casting_on_slurm.ows +54 -0
- orangecontrib/tomwer/widgets/__init__.py +3 -5
- orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py +35 -54
- orangecontrib/tomwer/widgets/cluster/SlurmClusterOW.py +1 -31
- orangecontrib/tomwer/widgets/control/AdvancementOW.py +1 -29
- orangecontrib/tomwer/widgets/control/DataDiscoveryOW.py +5 -4
- orangecontrib/tomwer/widgets/control/DataListenerOW.py +1 -29
- orangecontrib/tomwer/widgets/control/DataSelectorOW.py +11 -30
- orangecontrib/tomwer/widgets/control/DataTransfertOW.py +2 -28
- orangecontrib/tomwer/widgets/control/DataValidatorOW.py +1 -28
- orangecontrib/tomwer/widgets/control/DataWatcherOW.py +1 -28
- orangecontrib/tomwer/widgets/control/EDF2NXTomomillOW.py +48 -51
- orangecontrib/tomwer/widgets/control/EmailOW.py +12 -2
- orangecontrib/tomwer/widgets/control/FilterOW.py +1 -28
- orangecontrib/tomwer/widgets/control/NXTomomillOW.py +37 -53
- orangecontrib/tomwer/widgets/control/NXtomoConcatenate.py +21 -20
- orangecontrib/tomwer/widgets/control/NotifierOW.py +9 -28
- orangecontrib/tomwer/widgets/control/ReduceDarkFlatSelectorOW.py +3 -2
- orangecontrib/tomwer/widgets/control/SingleTomoObjOW.py +1 -27
- orangecontrib/tomwer/widgets/control/TimerOW.py +9 -28
- orangecontrib/tomwer/widgets/control/TomoObjSeriesOW.py +58 -0
- orangecontrib/tomwer/widgets/control/VolumeSelector.py +8 -30
- orangecontrib/tomwer/widgets/control/icons/nxtomomill.svg +173 -119
- orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.png +0 -0
- orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.svg +55 -195
- orangecontrib/tomwer/widgets/control/icons/{tomoobjserie.svg → tomoobjseries.svg} +2 -2
- orangecontrib/tomwer/widgets/dataportal/PublishProcessedDataOW.py +172 -0
- orangecontrib/tomwer/widgets/{icat → dataportal}/__init__.py +2 -2
- orangecontrib/tomwer/widgets/debugtools/DatasetGeneratorOW.py +2 -29
- orangecontrib/tomwer/widgets/debugtools/ObjectInspectorOW.py +1 -29
- orangecontrib/tomwer/widgets/edit/DarkFlatPatchOW.py +48 -73
- orangecontrib/tomwer/widgets/edit/ImageKeyEditorOW.py +48 -75
- orangecontrib/tomwer/widgets/edit/ImageKeyUpgraderOW.py +5 -30
- orangecontrib/tomwer/widgets/edit/NXtomoEditorOW.py +51 -52
- orangecontrib/tomwer/widgets/other/PythonScriptOW.py +22 -10
- orangecontrib/tomwer/widgets/reconstruction/AxisOW.py +48 -49
- orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py +22 -68
- orangecontrib/tomwer/widgets/reconstruction/DarkRefAndCopyOW.py +3 -30
- orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py +21 -19
- orangecontrib/tomwer/widgets/reconstruction/NabuOW.py +7 -70
- orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py +40 -85
- orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py +15 -40
- orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py +13 -35
- orangecontrib/tomwer/widgets/reconstruction/SinoNormOW.py +2 -30
- orangecontrib/tomwer/widgets/stitching/ZStitchingConfigOW.py +11 -11
- orangecontrib/tomwer/widgets/utils.py +2 -29
- orangecontrib/tomwer/widgets/visualization/DataViewerOW.py +1 -27
- orangecontrib/tomwer/widgets/visualization/DiffViewerOW.py +1 -27
- orangecontrib/tomwer/widgets/visualization/NXtomoMetadataViewerOW.py +1 -1
- orangecontrib/tomwer/widgets/visualization/RadioStackOW.py +2 -28
- orangecontrib/tomwer/widgets/visualization/SampleMovedOW.py +1 -27
- orangecontrib/tomwer/widgets/visualization/SinogramViewerOW.py +1 -27
- orangecontrib/tomwer/widgets/visualization/SliceStackOW.py +2 -28
- tomwer/__init__.py +3 -28
- tomwer/__main__.py +8 -4
- tomwer/app/__init__.py +2 -0
- tomwer/app/axis.py +8 -7
- tomwer/app/canvas.py +23 -29
- tomwer/app/canvas_launcher/config.py +14 -102
- tomwer/app/canvas_launcher/environ.py +5 -8
- tomwer/app/canvas_launcher/mainwindow.py +175 -69
- tomwer/app/canvas_launcher/splash.py +1 -3
- tomwer/app/canvas_launcher/utils.py +47 -0
- tomwer/app/canvas_launcher/widgetsscheme.py +3 -10
- tomwer/app/diffframe.py +2 -0
- tomwer/app/imagekeyeditor.py +2 -1
- tomwer/app/imagekeyupgrader.py +2 -0
- tomwer/app/multicor.py +5 -2
- tomwer/app/multipag.py +7 -4
- tomwer/app/nabuapp.py +2 -1
- tomwer/app/nxtomoeditor.py +17 -12
- tomwer/app/patchrawdarkflat.py +2 -0
- tomwer/app/radiostack.py +3 -2
- tomwer/app/reducedarkflat.py +3 -0
- tomwer/app/samplemoved.py +2 -0
- tomwer/app/scanviewer.py +2 -0
- tomwer/app/sinogramviewer.py +2 -0
- tomwer/app/slicestack.py +11 -13
- tomwer/app/stitching/common.py +431 -0
- tomwer/app/stopdatalistener.py +3 -0
- tomwer/app/ystitching.py +26 -0
- tomwer/app/zstitching.py +8 -363
- tomwer/core/__init__.py +2 -28
- tomwer/core/cluster/__init__.py +3 -0
- tomwer/core/cluster/cluster.py +10 -26
- tomwer/core/futureobject.py +17 -43
- tomwer/core/log/__init__.py +2 -0
- tomwer/core/log/processlog.py +0 -28
- tomwer/core/process/cluster/supervisor.py +52 -34
- tomwer/core/process/conditions/filters.py +3 -28
- tomwer/core/process/control/datalistener/datalistener.py +7 -75
- tomwer/core/process/control/datalistener/rpcserver.py +8 -38
- tomwer/core/process/control/datawatcher/datawatcher.py +11 -40
- tomwer/core/process/control/datawatcher/datawatcherobserver.py +30 -64
- tomwer/core/process/control/datawatcher/datawatcherprocess.py +11 -32
- tomwer/core/process/control/datawatcher/edfdwprocess.py +2 -27
- tomwer/core/process/control/datawatcher/hdf5dwprocess.py +1 -26
- tomwer/core/process/control/datawatcher/status.py +1 -26
- tomwer/core/process/control/emailnotifier.py +11 -23
- tomwer/core/process/control/nxtomoconcatenate.py +20 -18
- tomwer/core/process/control/nxtomomill.py +9 -44
- tomwer/core/process/control/scanlist.py +0 -27
- tomwer/core/process/control/scantransfer.py +15 -13
- tomwer/core/process/control/scanvalidator.py +4 -30
- tomwer/core/process/control/{test → tests}/test_concatenate_nxtomos.py +5 -5
- tomwer/core/process/control/timer.py +1 -27
- tomwer/core/process/control/tomoobjseries.py +12 -0
- tomwer/core/process/drac/binning.py +37 -0
- tomwer/core/process/drac/dracbase.py +170 -0
- tomwer/core/process/drac/gallery.py +109 -0
- tomwer/core/process/drac/output.py +12 -0
- tomwer/core/process/drac/processeddataset.py +147 -0
- tomwer/core/process/drac/publish.py +118 -0
- tomwer/core/process/drac/rawdataset.py +142 -0
- tomwer/core/process/drac/tests/test_gallery.py +71 -0
- tomwer/core/process/drac/tests/test_icat_processed_dataset.py +80 -0
- tomwer/core/process/drac/tests/test_icat_raw_dataset.py +90 -0
- tomwer/core/process/edit/darkflatpatch.py +1 -28
- tomwer/core/process/edit/imagekeyeditor.py +4 -32
- tomwer/core/process/edit/nxtomoeditor.py +307 -0
- tomwer/core/process/edit/tests/test_darkflatpatch.py +243 -0
- tomwer/core/process/edit/tests/test_imagekey_editor.py +99 -0
- tomwer/core/process/output.py +9 -2
- tomwer/core/process/reconstruction/__init__.py +0 -26
- tomwer/core/process/reconstruction/axis/anglemode.py +1 -29
- tomwer/core/process/reconstruction/axis/axis.py +63 -111
- tomwer/core/process/reconstruction/axis/mode.py +5 -3
- tomwer/core/process/reconstruction/axis/params.py +5 -146
- tomwer/core/process/reconstruction/axis/projectiontype.py +0 -28
- tomwer/core/process/reconstruction/darkref/darkrefs.py +14 -39
- tomwer/core/process/reconstruction/darkref/darkrefscopy.py +7 -39
- tomwer/core/process/reconstruction/darkref/params.py +1 -28
- tomwer/core/process/reconstruction/nabu/castvolume.py +19 -34
- tomwer/core/process/reconstruction/nabu/nabucommon.py +18 -43
- tomwer/core/process/reconstruction/nabu/nabuscores.py +47 -48
- tomwer/core/process/reconstruction/nabu/nabuslices.py +59 -105
- tomwer/core/process/reconstruction/nabu/nabuvolume.py +44 -70
- tomwer/core/process/reconstruction/nabu/plane.py +10 -0
- tomwer/core/process/reconstruction/nabu/settings.py +1 -28
- tomwer/core/process/reconstruction/nabu/target.py +0 -28
- tomwer/core/process/reconstruction/nabu/test/test_castvolume.py +116 -0
- tomwer/core/process/reconstruction/nabu/test/test_nabu_utils.py +277 -0
- tomwer/core/process/reconstruction/nabu/test/test_nabunormalization.py +199 -0
- tomwer/core/process/reconstruction/nabu/utils.py +11 -60
- tomwer/core/process/reconstruction/normalization/normalization.py +2 -32
- tomwer/core/process/reconstruction/normalization/params.py +3 -35
- tomwer/core/process/reconstruction/output.py +14 -19
- tomwer/core/process/reconstruction/paramsbase.py +4 -33
- tomwer/core/process/reconstruction/saaxis/params.py +5 -33
- tomwer/core/process/reconstruction/saaxis/saaxis.py +18 -47
- tomwer/core/process/reconstruction/sadeltabeta/params.py +2 -31
- tomwer/core/process/reconstruction/sadeltabeta/sadeltabeta.py +16 -44
- tomwer/core/process/reconstruction/scores/params.py +9 -39
- tomwer/core/process/reconstruction/scores/scores.py +10 -42
- tomwer/core/process/reconstruction/tests/__init__.py +0 -0
- tomwer/core/process/reconstruction/tests/test_axis.py +46 -0
- tomwer/core/process/reconstruction/tests/test_darkref.py +33 -0
- tomwer/core/process/reconstruction/{test → tests}/test_saaxis.py +1 -27
- tomwer/core/process/reconstruction/tests/test_sadeltabeta.py +48 -0
- tomwer/core/process/script/python.py +1 -27
- tomwer/core/process/script/tests/test_script.py +41 -0
- tomwer/core/process/stitching/metadataholder.py +5 -4
- tomwer/core/process/stitching/nabustitcher.py +35 -5
- tomwer/core/process/stitching/tests/test_metadataholder.py +17 -0
- tomwer/core/process/task.py +20 -63
- tomwer/core/process/tests/__init__.py +0 -0
- tomwer/core/process/{test → tests}/test_axis.py +1 -79
- tomwer/core/process/{test → tests}/test_conditions.py +1 -28
- tomwer/core/process/{test → tests}/test_dark_and_flat.py +1 -27
- tomwer/core/process/{test → tests}/test_data_listener.py +1 -27
- tomwer/core/process/{test → tests}/test_data_transfer.py +2 -28
- tomwer/core/process/{test → tests}/test_data_watcher.py +1 -27
- tomwer/core/process/{test → tests}/test_nabu.py +4 -33
- tomwer/core/process/{test → tests}/test_normalization.py +1 -26
- tomwer/core/process/{test → tests}/test_timer.py +1 -27
- tomwer/core/process/utils.py +2 -31
- tomwer/core/process/visualization/dataviewer.py +1 -26
- tomwer/core/process/visualization/diffviewer.py +1 -26
- tomwer/core/process/visualization/imagestackviewer.py +0 -26
- tomwer/core/process/visualization/radiostack.py +0 -26
- tomwer/core/process/visualization/samplemoved.py +0 -28
- tomwer/core/process/visualization/sinogramviewer.py +0 -27
- tomwer/core/process/visualization/slicestack.py +0 -28
- tomwer/core/process/visualization/tests/test_data_viewer.py +12 -0
- tomwer/core/process/visualization/tests/test_diff_viewer.py +12 -0
- tomwer/core/process/visualization/tests/test_image_stack_viewer.py +14 -0
- tomwer/core/process/visualization/tests/test_radio_stack.py +12 -0
- tomwer/core/process/visualization/tests/test_sample_moved.py +14 -0
- tomwer/core/process/visualization/tests/test_sinogram_viewer.py +13 -0
- tomwer/core/process/visualization/tests/test_slice_stack.py +13 -0
- tomwer/core/process/visualization/tests/test_volume_viewer.py +12 -0
- tomwer/core/process/visualization/volumeviewer.py +0 -29
- tomwer/core/scan/__init__.py +3 -27
- tomwer/core/scan/blissscan.py +5 -34
- tomwer/core/scan/edfscan.py +19 -53
- tomwer/core/scan/hdf5scan.py +2 -2
- tomwer/core/scan/nxtomoscan.py +46 -54
- tomwer/core/scan/scanbase.py +104 -200
- tomwer/core/scan/scanfactory.py +11 -41
- tomwer/core/scan/tests/__init__.py +0 -0
- tomwer/core/scan/tests/test_edf.py +25 -0
- tomwer/core/scan/tests/test_future_scan.py +35 -0
- tomwer/core/scan/tests/test_nxtomoscan.py +143 -0
- tomwer/core/scan/{test → tests}/test_process_registration.py +1 -28
- tomwer/core/settings.py +18 -40
- tomwer/core/tests/__init__.py +0 -0
- tomwer/core/tests/test_scanutils.py +26 -0
- tomwer/core/{test → tests}/test_utils.py +1 -28
- tomwer/core/tomwer_object.py +4 -0
- tomwer/core/utils/__init__.py +2 -0
- tomwer/core/utils/char.py +0 -28
- tomwer/core/utils/deprecation.py +12 -38
- tomwer/core/utils/dictutils.py +1 -3
- tomwer/core/utils/ftseriesutils.py +1 -27
- tomwer/core/utils/gpu.py +0 -28
- tomwer/core/utils/image.py +8 -39
- tomwer/core/utils/locker.py +1 -28
- tomwer/core/utils/logconfig.py +0 -27
- tomwer/core/utils/normalization.py +4 -31
- tomwer/core/utils/nxtomoutils.py +8 -38
- tomwer/core/utils/resource.py +0 -26
- tomwer/core/utils/scanutils.py +23 -52
- tomwer/core/utils/slurm.py +7 -30
- tomwer/core/utils/spec.py +6 -6
- tomwer/core/utils/tests/__init__.py +0 -0
- tomwer/core/utils/tests/test_image.py +30 -0
- tomwer/core/utils/tests/test_nxtomo.py +38 -0
- tomwer/core/utils/tests/test_scan_utils.py +46 -0
- tomwer/core/utils/tests/test_time.py +6 -0
- tomwer/core/utils/threads.py +0 -26
- tomwer/core/utils/time.py +0 -27
- tomwer/core/volume/__init__.py +4 -0
- tomwer/core/volume/edfvolume.py +1 -28
- tomwer/core/volume/hdf5volume.py +1 -28
- tomwer/core/volume/jp2kvolume.py +1 -27
- tomwer/core/volume/rawvolume.py +1 -28
- tomwer/core/volume/tests/test_volumes.py +21 -0
- tomwer/core/volume/tiffvolume.py +1 -28
- tomwer/core/volume/volumebase.py +5 -0
- tomwer/core/volume/volumefactory.py +7 -33
- tomwer/gui/__init__.py +0 -28
- tomwer/gui/cluster/__init__.py +2 -0
- tomwer/gui/cluster/slurm.py +297 -95
- tomwer/gui/cluster/supervisor.py +1 -27
- tomwer/gui/cluster/tests/__init__.py +0 -0
- tomwer/gui/cluster/{test → tests}/test_cluster.py +21 -26
- tomwer/gui/cluster/{test → tests}/test_supervisor.py +1 -27
- tomwer/gui/conditions/__init__.py +2 -0
- tomwer/gui/conditions/filter.py +1 -26
- tomwer/gui/configuration/__init__.py +2 -0
- tomwer/gui/control/__init__.py +2 -0
- tomwer/gui/control/actions.py +2 -28
- tomwer/gui/control/datadiscovery.py +4 -3
- tomwer/gui/control/datalist.py +64 -69
- tomwer/gui/control/datalistener.py +1 -39
- tomwer/gui/control/datareacheractions.py +1 -28
- tomwer/gui/control/datatransfert.py +2 -29
- tomwer/gui/control/datavalidator.py +3 -37
- tomwer/gui/control/datawatcher/__init__.py +0 -28
- tomwer/gui/control/datawatcher/configuration.py +1 -28
- tomwer/gui/control/datawatcher/datawatcher.py +3 -32
- tomwer/gui/control/datawatcher/datawatcherobserver.py +2 -28
- tomwer/gui/control/history.py +5 -35
- tomwer/gui/control/nxtomomill.py +3 -30
- tomwer/gui/control/observations.py +61 -55
- tomwer/gui/control/reducedarkflatselector.py +24 -20
- tomwer/gui/control/scanselectorwidget.py +2 -28
- tomwer/gui/control/selectorwidgetbase.py +17 -17
- tomwer/gui/control/series/__init__.py +0 -0
- tomwer/gui/control/{serie/seriecreator.py → series/seriescreator.py} +214 -235
- tomwer/gui/control/series/serieswaiter.py +0 -0
- tomwer/gui/control/series/test/test_creator.py +424 -0
- tomwer/gui/control/series/test/test_nxtomo_concatenate.py +21 -0
- tomwer/gui/control/singletomoobj.py +1 -1
- tomwer/gui/control/tests/__init__.py +0 -0
- tomwer/gui/control/tests/test_datalist.py +47 -0
- tomwer/gui/control/{test → tests}/test_datalistener.py +1 -28
- tomwer/gui/control/tests/test_datavalidator.py +27 -0
- tomwer/gui/control/{test → tests}/test_inputwidget.py +1 -27
- tomwer/gui/control/tests/test_process_manager.py +38 -0
- tomwer/gui/control/tests/test_scan_observations.py +23 -0
- tomwer/gui/control/tests/test_scanselector.py +42 -0
- tomwer/gui/control/{test → tests}/test_scanvalidator.py +1 -27
- tomwer/gui/control/{test → tests}/test_volume_dialog.py +2 -30
- tomwer/gui/control/{test → tests}/test_volumeselector.py +1 -27
- tomwer/gui/control/volumeselectorwidget.py +2 -30
- tomwer/gui/dataportal/__init__.py +2 -0
- tomwer/gui/{icat → dataportal}/createscreenshots.py +3 -2
- tomwer/gui/dataportal/gallery.py +133 -0
- tomwer/gui/dataportal/outputformat.py +0 -0
- tomwer/gui/dataportal/publish.py +96 -0
- tomwer/gui/dataportal/tests/test_create_screenshots_gui.py +23 -0
- tomwer/gui/dataportal/tests/test_gallery_gui.py +21 -0
- tomwer/gui/debugtools/__init__.py +2 -0
- tomwer/gui/debugtools/datasetgenerator.py +1 -30
- tomwer/gui/debugtools/objectinspector.py +1 -29
- tomwer/gui/dialog/QDataDialog.py +89 -0
- tomwer/gui/{qfolderdialog.py → dialog/QVolumeDialog.py} +8 -107
- tomwer/gui/dialog/__init__.py +1 -0
- tomwer/gui/edit/__init__.py +2 -0
- tomwer/gui/edit/dkrfpatch.py +52 -87
- tomwer/gui/edit/imagekeyeditor.py +18 -54
- tomwer/gui/edit/nxtomoeditor.py +113 -300
- tomwer/gui/edit/nxtomowarmer.py +3 -2
- tomwer/gui/edit/tests/__init__.py +0 -0
- tomwer/gui/edit/{test → tests}/test_dkrf_patch.py +3 -29
- tomwer/gui/edit/{test → tests}/test_image_key_editor.py +1 -27
- tomwer/gui/edit/{test → tests}/test_nx_editor.py +45 -23
- tomwer/gui/icons.py +28 -66
- tomwer/gui/illustrations.py +4 -34
- tomwer/gui/imagefromfile.py +5 -30
- tomwer/gui/metadataloader.py +36 -0
- tomwer/gui/qconfigfile.py +3 -0
- tomwer/gui/qlefilesystem.py +3 -0
- tomwer/gui/reconstruction/__init__.py +2 -0
- tomwer/gui/reconstruction/axis/AxisMainWindow.py +264 -0
- tomwer/gui/reconstruction/axis/AxisOptionsWidget.py +153 -0
- tomwer/gui/reconstruction/axis/AxisSettingsWidget.py +776 -0
- tomwer/gui/reconstruction/axis/AxisWidget.py +526 -0
- tomwer/gui/reconstruction/axis/CalculationWidget.py +374 -0
- tomwer/gui/reconstruction/axis/CompareImages.py +11 -44
- tomwer/gui/reconstruction/axis/ControlWidget.py +277 -0
- tomwer/gui/reconstruction/axis/InputWidget.py +491 -0
- tomwer/gui/reconstruction/axis/ManualFramesSelection.py +168 -0
- tomwer/gui/reconstruction/axis/__init__.py +2 -2
- tomwer/gui/reconstruction/darkref/__init__.py +0 -27
- tomwer/gui/reconstruction/darkref/darkrefcopywidget.py +5 -34
- tomwer/gui/reconstruction/darkref/darkrefwidget.py +1 -27
- tomwer/gui/reconstruction/nabu/castvolume.py +40 -59
- tomwer/gui/reconstruction/nabu/check.py +7 -33
- tomwer/gui/reconstruction/nabu/nabuconfig/base.py +7 -34
- tomwer/gui/reconstruction/nabu/nabuconfig/ctf.py +6 -5
- tomwer/gui/reconstruction/nabu/nabuconfig/nabuconfig.py +10 -69
- tomwer/gui/reconstruction/nabu/nabuconfig/output.py +3 -47
- tomwer/gui/reconstruction/nabu/nabuconfig/phase.py +54 -36
- tomwer/gui/reconstruction/nabu/nabuconfig/preprocessing.py +103 -54
- tomwer/gui/reconstruction/nabu/nabuconfig/reconstruction.py +116 -65
- tomwer/gui/reconstruction/nabu/nabuflow.py +31 -61
- tomwer/gui/reconstruction/nabu/platform.py +94 -0
- tomwer/gui/reconstruction/nabu/slices.py +81 -45
- tomwer/gui/reconstruction/nabu/slurm.py +1 -27
- tomwer/gui/reconstruction/nabu/test/test_cast_volume.py +82 -0
- tomwer/gui/reconstruction/nabu/test/test_check.py +66 -0
- tomwer/gui/reconstruction/nabu/test/test_ctf.py +46 -0
- tomwer/gui/reconstruction/nabu/test/test_helical.py +21 -0
- tomwer/gui/reconstruction/nabu/test/test_nabu_preprocessing.py +81 -0
- tomwer/gui/reconstruction/nabu/volume.py +62 -90
- tomwer/gui/reconstruction/normalization/intensity.py +5 -32
- tomwer/gui/reconstruction/normalization/test/test_intensity.py +89 -0
- tomwer/gui/reconstruction/saaxis/corrangeselector.py +16 -49
- tomwer/gui/reconstruction/saaxis/dimensionwidget.py +56 -96
- tomwer/gui/reconstruction/saaxis/saaxis.py +17 -38
- tomwer/gui/reconstruction/saaxis/sliceselector.py +8 -39
- tomwer/gui/reconstruction/sadeltabeta/saadeltabeta.py +19 -37
- tomwer/gui/reconstruction/scores/control.py +2 -30
- tomwer/gui/reconstruction/scores/scoreplot.py +19 -48
- tomwer/gui/reconstruction/tests/__init__.py +0 -0
- tomwer/gui/reconstruction/{test → tests}/test_axis.py +23 -49
- tomwer/gui/reconstruction/{test → tests}/test_nabu.py +8 -31
- tomwer/gui/reconstruction/{test → tests}/test_saaxis.py +10 -37
- tomwer/gui/reconstruction/{test → tests}/test_sadeltabeta.py +1 -26
- tomwer/gui/samplemoved/__init__.py +2 -30
- tomwer/gui/samplemoved/selectiontable.py +3 -33
- tomwer/gui/settings.py +7 -0
- tomwer/gui/stackplot.py +33 -661
- tomwer/gui/stacks.py +261 -135
- tomwer/gui/stitching/SingleAxisStitchingWidget.py +326 -0
- tomwer/gui/stitching/StitchingOptionsWidget.py +438 -0
- tomwer/gui/stitching/StitchingWindow.py +586 -0
- tomwer/gui/stitching/__init__.py +2 -0
- tomwer/gui/stitching/alignment.py +90 -0
- tomwer/gui/stitching/axisorderedlist.py +44 -34
- tomwer/gui/stitching/config/axisparams.py +23 -11
- tomwer/gui/stitching/config/output.py +6 -5
- tomwer/gui/stitching/config/positionoveraxis.py +313 -51
- tomwer/gui/stitching/config/stitchingstrategies.py +22 -16
- tomwer/gui/stitching/config/tests/test_axisparams.py +25 -0
- tomwer/gui/stitching/config/tomoobjdetails.py +3 -5
- tomwer/gui/stitching/normalization.py +1 -0
- tomwer/gui/stitching/preview.py +59 -0
- tomwer/gui/stitching/singleaxis.py +57 -0
- tomwer/gui/stitching/stitchandbackground.py +3 -2
- tomwer/gui/stitching/stitching_preview.py +44 -36
- tomwer/gui/stitching/stitching_raw.py +5 -3
- tomwer/gui/stitching/tests/test_ZStitchingWindow.py +88 -0
- tomwer/gui/stitching/tests/test_axis_ordered_list.py +21 -0
- tomwer/gui/stitching/tests/test_normalization.py +27 -0
- tomwer/gui/stitching/tests/test_preview.py +68 -0
- tomwer/gui/stitching/tests/test_stitching_raw.py +110 -0
- tomwer/gui/stitching/tests/utils.py +92 -0
- tomwer/gui/stitching/utils.py +14 -0
- tomwer/gui/stitching/z_stitching/fineestimation.py +4 -32
- tomwer/gui/stitching/z_stitching/tests/test_fine_estimation.py +35 -0
- tomwer/gui/stitching/z_stitching/tests/test_raw_estimation.py +215 -0
- tomwer/gui/stitching/z_stitching/tests/test_stitching_window.py +51 -0
- tomwer/gui/tests/__init__.py +0 -0
- tomwer/gui/tests/test_axis_gui.py +27 -0
- tomwer/gui/{test → tests}/test_qfolder_dialog.py +1 -1
- tomwer/gui/utils/RangeWidget.py +44 -0
- tomwer/gui/utils/buttons.py +4 -3
- tomwer/gui/utils/completer.py +2 -33
- tomwer/gui/utils/flow.py +11 -40
- tomwer/gui/utils/gpu.py +60 -0
- tomwer/gui/utils/illustrations.py +1 -26
- tomwer/gui/utils/inputwidget.py +35 -73
- tomwer/gui/utils/lineselector/lineselector.py +9 -46
- tomwer/gui/utils/loadingmode.py +81 -0
- tomwer/gui/utils/qt_utils.py +9 -0
- tomwer/gui/utils/sandboxes.py +1 -26
- tomwer/gui/utils/scandescription.py +2 -31
- tomwer/gui/utils/scrollarea.py +6 -55
- tomwer/gui/utils/slider.py +4 -28
- tomwer/gui/utils/splashscreen.py +0 -28
- tomwer/gui/utils/step.py +14 -13
- tomwer/gui/utils/tests/test_completer.py +41 -0
- tomwer/gui/utils/tests/test_line_selector.py +21 -0
- tomwer/gui/utils/tests/test_splashscreen.py +8 -0
- tomwer/gui/utils/tests/test_vignettes.py +68 -0
- tomwer/gui/utils/unitsystem.py +15 -69
- tomwer/gui/utils/utils.py +4 -5
- tomwer/gui/utils/vignettes.py +10 -41
- tomwer/gui/utils/waiterthread.py +0 -26
- tomwer/gui/visualization/__init__.py +2 -0
- tomwer/gui/visualization/dataviewer.py +68 -421
- tomwer/gui/visualization/diffviewer/diffviewer.py +2 -30
- tomwer/gui/visualization/diffviewer/shiftwidget.py +4 -29
- tomwer/gui/visualization/fullscreenplot.py +5 -5
- tomwer/gui/visualization/imagestack.py +403 -0
- tomwer/gui/visualization/nxtomometadata.py +0 -4
- tomwer/gui/visualization/reconstructionparameters.py +14 -32
- tomwer/gui/visualization/scanoverview.py +33 -66
- tomwer/gui/visualization/sinogramviewer.py +2 -28
- tomwer/gui/visualization/test/__init__.py +0 -28
- tomwer/gui/visualization/test/test_dataviewer.py +1 -28
- tomwer/gui/visualization/test/test_diffviewer.py +1 -28
- tomwer/gui/visualization/test/test_nx_tomo_metadata_viewer.py +0 -5
- tomwer/gui/visualization/test/test_reconstruction_parameters.py +1 -27
- tomwer/gui/visualization/test/test_sinogramviewer.py +1 -28
- tomwer/gui/visualization/test/test_stacks.py +184 -115
- tomwer/gui/visualization/test/test_volumeviewer.py +3 -2
- tomwer/gui/visualization/tomoobjoverview.py +2 -2
- tomwer/gui/visualization/volumeoverview.py +3 -2
- tomwer/gui/visualization/volumeviewer.py +47 -43
- tomwer/io/__init__.py +2 -0
- tomwer/io/utils/h5pyutils.py +1 -27
- tomwer/io/utils/test/test_raw_and_processed_data.py +10 -0
- tomwer/io/utils/test/test_utils.py +67 -0
- tomwer/io/utils/utils.py +2 -31
- tomwer/resources/__init__.py +13 -33
- tomwer/resources/gui/icons/edit_downstream.svg +114 -0
- tomwer/resources/gui/icons/edit_upstream.svg +112 -0
- tomwer/resources/gui/icons/free_edition.svg +23 -0
- tomwer/resources/gui/icons/icat_gallery_opts.png +0 -0
- tomwer/resources/gui/icons/icat_gallery_opts.svg +80 -0
- tomwer/resources/gui/icons/search.png +0 -0
- tomwer/resources/gui/icons/search.svg +23 -0
- tomwer/resources/gui/icons/warning.png +0 -0
- tomwer/synctools/__init__.py +2 -0
- tomwer/synctools/axis.py +1 -27
- tomwer/synctools/darkref.py +1 -26
- tomwer/synctools/datalistener.py +1 -27
- tomwer/synctools/datatransfert.py +2 -27
- tomwer/synctools/imageloaderthread.py +1 -28
- tomwer/synctools/rsyncmanager.py +1 -25
- tomwer/synctools/saaxis.py +1 -26
- tomwer/synctools/sadeltabeta.py +1 -26
- tomwer/synctools/stacks/control/datalistener.py +1 -26
- tomwer/synctools/stacks/processingstack.py +4 -33
- tomwer/synctools/stacks/reconstruction/axis.py +2 -31
- tomwer/synctools/stacks/reconstruction/castvolume.py +12 -43
- tomwer/synctools/stacks/reconstruction/dkrefcopy.py +3 -26
- tomwer/synctools/stacks/reconstruction/nabu.py +1 -26
- tomwer/synctools/stacks/reconstruction/normalization.py +1 -26
- tomwer/synctools/stacks/reconstruction/saaxis.py +1 -26
- tomwer/synctools/stacks/reconstruction/sadeltabeta.py +1 -26
- tomwer/synctools/tests/__init__.py +0 -0
- tomwer/synctools/{test → tests}/test_darkRefs.py +16 -40
- tomwer/synctools/{test → tests}/test_foldertransfer.py +2 -33
- tomwer/synctools/utils/scanstages.py +2 -31
- tomwer/tests/__init__.py +1 -0
- tomwer/tests/app/test_stitching.py +95 -0
- tomwer/tests/datasets.py +1 -5
- tomwer/tests/orangecontrib/tomwer/widgets/cluster/tests/test_future_supervisorow.py +48 -0
- tomwer/tests/orangecontrib/tomwer/widgets/cluster/tests/test_slurm_clusterow.py +40 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_advancement.py +8 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_data_validator.py +55 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datadiscovery.py +129 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datalistener.py +111 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_dataselector.py +69 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datawatcher.py +411 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_emailow.py +29 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_notifier.py +24 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_nxtomo_concatenate_ow.py +64 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_nxtomomill.py +133 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_reduce_dark_flat_selector.py +40 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_singletomoobj.py +40 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_timerow.py +25 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_tomoobj_series.py +96 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_volume_selector.py +69 -0
- orangecontrib/tomwer/widgets/edit/test/test_image_key_editor.py → tomwer/tests/orangecontrib/tomwer/widgets/debugtools/tests/test_dataset_generator.py +17 -16
- tomwer/tests/orangecontrib/tomwer/widgets/debugtools/tests/test_object_inspector.py +36 -0
- {orangecontrib/tomwer/widgets/edit/test → tomwer/tests/orangecontrib/tomwer/widgets/edit/tests}/test_dark_flat_patch.py +1 -27
- tomwer/tests/orangecontrib/tomwer/widgets/edit/tests/test_image_key_editor.py +30 -0
- tomwer/tests/orangecontrib/tomwer/widgets/edit/tests/test_nxtomo_editor.py +138 -0
- tomwer/tests/orangecontrib/tomwer/widgets/other/tests/test_pythonscript.py +31 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_axis.py +215 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_cast_volumeow.py +58 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_dark_refs_widget.py +136 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_delta_beta_selector.py +15 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_i_norm.py +200 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_helical_prepare_weights_double.py +20 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_volume.py +74 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_widget.py +107 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_sa_delta_beta.py +194 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_saaxis.py +194 -0
- tomwer/tests/orangecontrib/tomwer/widgets/stitching/tests/test_zstitching.py +313 -0
- tomwer/tests/orangecontrib/tomwer/widgets/tests/test_conditions.py +85 -0
- tomwer/tests/orangecontrib/tomwer/widgets/tests/test_darkref.py +225 -0
- tomwer/tests/orangecontrib/tomwer/widgets/tests/test_foldertransfert.py +105 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_dataviewerow.py +57 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_diffviewerow.py +39 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_nxtomo_metadata_viewer.py +29 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_radio_stackow.py +31 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_sample_movedow.py +46 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_sinogram_viewerow.py +31 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_slice_stackow.py +31 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_volume_viewerow.py +32 -0
- tomwer/tests/test_ewoks/test_conversion.py +104 -0
- tomwer/tests/test_ewoks/test_single_node_execution.py +87 -0
- tomwer/tests/test_ewoks/test_workflows.py +138 -0
- tomwer/utils.py +11 -39
- tomwer/version.py +3 -3
- {tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/LICENSE +3 -3
- tomwer-1.4.0rc0.dist-info/METADATA +337 -0
- tomwer-1.4.0rc0.dist-info/RECORD +909 -0
- {tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/WHEEL +1 -1
- {tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/entry_points.txt +1 -0
- orangecontrib/tomwer/widgets/control/DataListOW.py +0 -129
- orangecontrib/tomwer/widgets/control/TomoObjSerieOW.py +0 -86
- orangecontrib/tomwer/widgets/control/VolumeSymLinkOW.py +0 -182
- orangecontrib/tomwer/widgets/edit/test/test_nxtomo_editor.py +0 -141
- orangecontrib/tomwer/widgets/icat/PublishProcessedDataOW.py +0 -115
- orangecontrib/tomwer/widgets/icat/RawDataScreenshotCreatorOW.py +0 -98
- orangecontrib/tomwer/widgets/icat/SaveToGalleryAndPublishOW.py +0 -129
- orangecontrib/tomwer/widgets/icat/icons/add_gallery.png +0 -0
- orangecontrib/tomwer/widgets/icat/icons/add_gallery.svg +0 -82
- orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.png +0 -0
- orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.svg +0 -143
- orangecontrib/tomwer/widgets/visualization/LivesliceOW.py +0 -87
- orangecontrib/tomwer/widgets/visualization/icons/liveslice.png +0 -0
- orangecontrib/tomwer/widgets/visualization/icons/liveslice.svg +0 -110
- tomwer/core/log/logger.py +0 -130
- tomwer/core/process/control/test/test_volume_link.py +0 -74
- tomwer/core/process/control/tomoobjserie.py +0 -12
- tomwer/core/process/control/volumesymlink.py +0 -200
- tomwer/core/process/icat/createscreenshots.py +0 -100
- tomwer/core/process/icat/gallery.py +0 -377
- tomwer/core/process/icat/icatbase.py +0 -36
- tomwer/core/process/icat/publish.py +0 -228
- tomwer/core/process/icat/screenshots.py +0 -27
- tomwer/core/process/reconstruction/test/test_darkref.py +0 -60
- tomwer/core/process/reconstruction/test/test_sadeltabeta.py +0 -74
- tomwer/core/process/visualization/liveslice.py +0 -6
- tomwer/core/progress.py +0 -100
- tomwer/core/scan/test/test_edf.py +0 -53
- tomwer/core/scan/test/test_future_scan.py +0 -61
- tomwer/core/scan/test/test_h5.py +0 -96
- tomwer/core/test/test_scanutils.py +0 -53
- tomwer/gui/control/emailnotifier.py +0 -174
- tomwer/gui/control/serie/seriewaiter.py +0 -28
- tomwer/gui/control/test/__init__.py +0 -28
- tomwer/gui/control/test/test_datalist.py +0 -96
- tomwer/gui/control/test/test_datavalidator.py +0 -54
- tomwer/gui/control/test/test_email.py +0 -35
- tomwer/gui/control/test/test_process_manager.py +0 -65
- tomwer/gui/control/test/test_scanselector.py +0 -67
- tomwer/gui/edit/test/__init__.py +0 -28
- tomwer/gui/icat/gallery.py +0 -214
- tomwer/gui/icat/publish.py +0 -187
- tomwer/gui/reconstruction/axis/axis.py +0 -733
- tomwer/gui/reconstruction/axis/radioaxis.py +0 -2467
- tomwer/gui/stitching/stitching.py +0 -1388
- tomwer/gui/test/__init__.py +0 -28
- tomwer/gui/test/test_axis_gui.py +0 -34
- tomwer/synctools/stacks/edit/darkflatpatch.py +0 -169
- tomwer/synctools/stacks/edit/imagekeyeditor.py +0 -135
- tomwer/third_part/WaitingOverlay.py +0 -110
- tomwer-1.3.27-py3.11-nspkg.pth +0 -1
- tomwer-1.3.27.dist-info/METADATA +0 -292
- tomwer-1.3.27.dist-info/RECORD +0 -785
- tomwer-1.3.27.dist-info/namespace_packages.txt +0 -1
- /orangecontrib/tomwer/{widgets/edit/test → tests}/__init__.py +0 -0
- {tomwer/core/process/control/test → orangecontrib/tomwer/tutorials/id16b}/__init__.py +0 -0
- {tomwer/core/process/icat → orangecontrib/tomwer/widgets/cluster/tests}/__init__.py +0 -0
- /orangecontrib/tomwer/widgets/control/icons/{tomoobjserie.png → tomoobjseries.png} +0 -0
- {tomwer/core/process/reconstruction/test → orangecontrib/tomwer/widgets/control/tests}/__init__.py +0 -0
- /orangecontrib/tomwer/widgets/{icat → dataportal}/icons/publish_processed_data.png +0 -0
- /orangecontrib/tomwer/widgets/{icat → dataportal}/icons/publish_processed_data.svg +0 -0
- {tomwer/core/process/test → orangecontrib/tomwer/widgets/debugtools/tests}/__init__.py +0 -0
- {tomwer/core/scan/test → orangecontrib/tomwer/widgets/edit/tests}/__init__.py +0 -0
- {tomwer/core/test → orangecontrib/tomwer/widgets/other/tests}/__init__.py +0 -0
- {tomwer/gui/cluster/test → orangecontrib/tomwer/widgets/reconstruction/tests}/__init__.py +0 -0
- {tomwer/gui/control/serie → orangecontrib/tomwer/widgets/stitching/tests}/__init__.py +0 -0
- {tomwer/gui/icat → orangecontrib/tomwer/widgets/tests}/__init__.py +0 -0
- {tomwer/gui/reconstruction/test → orangecontrib/tomwer/widgets/visualization/tests}/__init__.py +0 -0
- /tomwer/{synctools/stacks/edit → app/stitching}/__init__.py +0 -0
- /tomwer/{synctools/test → core/process/control/tests}/__init__.py +0 -0
- /tomwer/core/process/control/{test → tests}/test_email.py +0 -0
- /tomwer/core/process/control/{test → tests}/test_h52nx_process.py +0 -0
- /tomwer/{third_part → core/process/drac}/__init__.py +0 -0
- /tomwer/core/process/reconstruction/{test → tests}/test_axis_params.py +0 -0
- /tomwer/core/process/reconstruction/{test → tests}/test_darkref_copy.py +0 -0
- /tomwer/core/process/reconstruction/{test → tests}/test_paramsbase.py +0 -0
- /tomwer/core/process/reconstruction/{test → tests}/test_utils.py +0 -0
- /tomwer/core/scan/{test → tests}/test_scan.py +0 -0
- /tomwer/gui/control/{serie → series}/nxtomoconcatenate.py +0 -0
- /tomwer/gui/control/{test → tests}/test_datadiscovery.py +0 -0
- /tomwer/gui/control/{test → tests}/test_reducedarkflat_selector.py +0 -0
- /tomwer/gui/control/{test → tests}/test_single_tomo_obj.py +0 -0
- {orangecontrib/tomwer/widgets/edit/test → tomwer/tests/orangecontrib/tomwer/widgets/edit/tests}/test_image_key_upgrader.py +0 -0
- {tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/top_level.txt +0 -0
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self.layout().addWidget(self._radioRB)
|
64
|
-
|
65
|
-
self._sinogramRB = qt.QRadioButton("sinogram", parent=self)
|
66
|
-
self.layout().addWidget(self._sinogramRB)
|
67
|
-
|
68
|
-
# Signal / Slot connections
|
69
|
-
self._radioRB.toggled.connect(self._selectionChanged)
|
70
|
-
self._sinogramRB.toggled.connect(self._selectionChanged)
|
71
|
-
|
72
|
-
def getSelection(self):
|
73
|
-
if self._radioRB.isChecked():
|
74
|
-
return "radio"
|
75
|
-
else:
|
76
|
-
return "sinogram"
|
77
|
-
|
78
|
-
def setSelection(self, selection):
|
79
|
-
if selection == "radio":
|
80
|
-
self._radioRB.setChecked(True)
|
81
|
-
elif selection == "sinogram":
|
82
|
-
self._sinogramRB.setChecked(True)
|
83
|
-
else:
|
84
|
-
raise ValueError("invalid selection given")
|
85
|
-
|
86
|
-
def _selectionChanged(self, *args, **kwargs):
|
87
|
-
self.sigSelectionChanged.emit(self.getSelection())
|
88
|
-
|
89
|
-
|
90
|
-
class AxisWindow(qt.QMainWindow):
|
91
|
-
"""Main widget for the axis calculation"""
|
92
|
-
|
93
|
-
sigComputationRequested = qt.Signal()
|
94
|
-
"""signal emitted when a computation is requested"""
|
95
|
-
|
96
|
-
sigApply = qt.Signal()
|
97
|
-
"""signal emitted when the axis reconstruction parameters are validated"""
|
98
|
-
|
99
|
-
sigAxisEditionLocked = qt.Signal(bool)
|
100
|
-
"""Signal emitted when the status of the reconstruction parameters edition
|
101
|
-
change"""
|
102
|
-
|
103
|
-
sigLockModeChanged = qt.Signal()
|
104
|
-
"""Signal emitted when the lock on the method change"""
|
105
|
-
|
106
|
-
def __init__(self, axis_params, parent=None, backend=None):
|
107
|
-
super().__init__(parent=parent)
|
108
|
-
self._mainWidget = qt.QWidget(self)
|
109
|
-
self._mainWidget.setLayout(qt.QVBoxLayout())
|
110
|
-
self.setCentralWidget(self._mainWidget)
|
111
|
-
|
112
|
-
self._axis_params = axis_params
|
113
|
-
|
114
|
-
# add scan name
|
115
|
-
self._scan_label = ScanNameLabelAndShape(parent=self)
|
116
|
-
self._mainWidget.layout().addWidget(self._scan_label)
|
117
|
-
|
118
|
-
# add selection
|
119
|
-
self._selectionGB = _AxisTypeSelection(parent=self)
|
120
|
-
self._mainWidget.layout().addWidget(self._selectionGB)
|
121
|
-
self._selectionGB.hide()
|
122
|
-
|
123
|
-
# add widget for radio and sinogram axis
|
124
|
-
self._axisWidget = _AxisWidget(
|
125
|
-
parent=self, axis_params=axis_params, backend=backend
|
126
|
-
)
|
127
|
-
self._mainWidget.layout().addWidget(self._axisWidget)
|
128
|
-
|
129
|
-
self.setCentralWidget(self._mainWidget)
|
130
|
-
|
131
|
-
# set up configuration
|
132
|
-
if axis_params.use_sinogram:
|
133
|
-
selection = "sinogram"
|
134
|
-
else:
|
135
|
-
selection = "radio"
|
136
|
-
self._selectionGB.setSelection(selection=selection)
|
137
|
-
self._selectionGB._selectionChanged(self._selectionGB.getSelection())
|
138
|
-
|
139
|
-
# connect signal / slots
|
140
|
-
self._axisWidget.sigValidateRequest.connect(self.sigApply)
|
141
|
-
self._axisWidget.sigComputationRequested.connect(self._computationRequested)
|
142
|
-
self._axisWidget.sigLockModeChanged.connect(self._lockModeChanged)
|
143
|
-
self._selectionGB.sigSelectionChanged.connect(self._axisWidget._axisTypeChanged)
|
144
|
-
self._axisWidget.sigSinogramReady.connect(self._computationReady)
|
145
|
-
|
146
|
-
# expose API
|
147
|
-
self.setSelection = self._selectionGB.setSelection
|
148
|
-
self.getSelection = self._selectionGB.getSelection
|
149
|
-
self.hideLockButton = self._axisWidget.hideLockButton
|
150
|
-
self.hideApplyButton = self._axisWidget.hideApplyButton
|
151
|
-
self.setReconsParams = self._axisWidget.setReconsParams
|
152
|
-
self.getPlotWidget = self._axisWidget.getPlotWidget
|
153
|
-
self.setMode = self._axisWidget.setMode
|
154
|
-
self.manual_uses_full_image = self._axisWidget.manual_uses_full_image
|
155
|
-
self.setModeLock = self._axisWidget.setModeLock
|
156
|
-
self.getAxis = self._axisWidget.getAxis
|
157
|
-
self.isModeLock = self._axisWidget.isModeLock
|
158
|
-
self.isValueLock = self._axisWidget.isValueLock
|
159
|
-
self.setValueLock = self._axisWidget.setValueLock
|
160
|
-
self._setValueLockFrmSettings = self._axisWidget._setValueLockFrmSettings
|
161
|
-
self._setModeLockFrmSettings = self._axisWidget._setModeLockFrmSettings
|
162
|
-
self.getRadioMode = self._axisWidget.getRadioMode
|
163
|
-
self.getEstimatedCor = self._axisWidget.getEstimatedCor
|
164
|
-
self.setEstimatedCor = self._axisWidget.setEstimatedCor
|
165
|
-
self.sigMethodChanged = self._axisWidget.sigModeChanged
|
166
|
-
|
167
|
-
def setAutoUpdateEstimatedCor(self, value: bool):
|
168
|
-
assert isinstance(value, bool)
|
169
|
-
self._axisWidget.setAutoUpdateEstimatedCor(value)
|
170
|
-
|
171
|
-
def _disableForProcessing(self, *args, **kwargs):
|
172
|
-
self._mainWidget.setEnabled(False)
|
173
|
-
self._axisWidget.setEnabled(False)
|
174
|
-
|
175
|
-
def _enableForProcessing(self, *args, **kwargs):
|
176
|
-
self._mainWidget.setEnabled(True)
|
177
|
-
self._axisWidget.setEnabled(True)
|
178
|
-
|
179
|
-
def _lockModeChanged(self):
|
180
|
-
self.sigLockModeChanged.emit()
|
181
|
-
|
182
|
-
def setScan(self, scan, set_position=True):
|
183
|
-
"""
|
184
|
-
set the gui for this scan
|
185
|
-
|
186
|
-
:param TomoBase scan:
|
187
|
-
"""
|
188
|
-
self._scan_label.setScan(scan=scan)
|
189
|
-
self._axisWidget.setScan(scan=scan, set_position=set_position)
|
190
|
-
self._enableSinogramOpt(scan.scan_range == 360)
|
191
|
-
|
192
|
-
def _enableSinogramOpt(self, b):
|
193
|
-
if self._selectionGB.getSelection() == "sinogram" and not b:
|
194
|
-
change_selection_to_radio = True
|
195
|
-
else:
|
196
|
-
change_selection_to_radio = False
|
197
|
-
self._selectionGB._sinogramRB.setEnabled(b)
|
198
|
-
if change_selection_to_radio:
|
199
|
-
self._selectionGB.setSelection("radio")
|
200
|
-
|
201
|
-
def _computationRequested(self):
|
202
|
-
self._computationReady()
|
203
|
-
|
204
|
-
def _computationReady(self):
|
205
|
-
self.sigComputationRequested.emit()
|
206
|
-
|
207
|
-
def setPosition(self, frm: float, value: float):
|
208
|
-
self._axisWidget.setPosition(relative_value=value)
|
209
|
-
|
210
|
-
|
211
|
-
class _AxisWidget(qt.QMainWindow):
|
212
|
-
"""
|
213
|
-
Control which plot and which settings widget is displayed
|
214
|
-
"""
|
215
|
-
|
216
|
-
sigComputationRequested = qt.Signal()
|
217
|
-
|
218
|
-
sigValidateRequest = qt.Signal()
|
219
|
-
|
220
|
-
sigLockCORValueChanged = qt.Signal(bool)
|
221
|
-
"""bool: True if locked"""
|
222
|
-
|
223
|
-
sigLockModeChanged = qt.Signal()
|
224
|
-
"""Signal emitted when the lock mode on the mode change"""
|
225
|
-
|
226
|
-
sigModeChanged = qt.Signal(str)
|
227
|
-
|
228
|
-
sigSinogramReady = qt.Signal()
|
229
|
-
|
230
|
-
def __init__(self, parent, axis_params, backend=None):
|
231
|
-
super().__init__(parent)
|
232
|
-
self._settingsWidget = None
|
233
|
-
self.setDockOptions(qt.QMainWindow.AnimatedDocks)
|
234
|
-
|
235
|
-
self._settingsDockWidget = qt.QDockWidget(parent=self)
|
236
|
-
self._settingsDockWidget.setFeatures(qt.QDockWidget.DockWidgetMovable)
|
237
|
-
self._settingsDockWidget.layout().setContentsMargins(0, 0, 0, 0)
|
238
|
-
self._settingsDockWidget.layout().setSpacing(0)
|
239
|
-
self.addDockWidget(qt.Qt.RightDockWidgetArea, self._settingsDockWidget)
|
240
|
-
|
241
|
-
self._controlWidget = _ControlWidget(parent=self)
|
242
|
-
self._controlWidget.setSizePolicy(
|
243
|
-
qt.QSizePolicy.Minimum, qt.QSizePolicy.Minimum
|
244
|
-
)
|
245
|
-
self._controlDockWidget = qt.QDockWidget(parent=self)
|
246
|
-
self._controlDockWidget.setSizePolicy(
|
247
|
-
qt.QSizePolicy.Minimum, qt.QSizePolicy.Minimum
|
248
|
-
)
|
249
|
-
self._controlDockWidget.layout().setContentsMargins(0, 0, 0, 0)
|
250
|
-
self._controlDockWidget.layout().setSpacing(0)
|
251
|
-
self._controlDockWidget.setMaximumHeight(150)
|
252
|
-
self._controlDockWidget.setWidget(self._controlWidget)
|
253
|
-
self._controlDockWidget.setFeatures(qt.QDockWidget.DockWidgetMovable)
|
254
|
-
self.addDockWidget(qt.Qt.RightDockWidgetArea, self._controlDockWidget)
|
255
|
-
|
256
|
-
self._axis_params = axis_params
|
257
|
-
self._radioAxis = RadioAxisWindow(
|
258
|
-
parent=self, axis=axis_params, backend=backend
|
259
|
-
)
|
260
|
-
self._plotWidgets = qt.QWidget(self)
|
261
|
-
self._plotWidgets.setLayout(qt.QVBoxLayout())
|
262
|
-
self.setCentralWidget(self._plotWidgets)
|
263
|
-
self._radioAxis.removeDockWidget(self._radioAxis.getSettingsWidgetDocker())
|
264
|
-
|
265
|
-
# expose API
|
266
|
-
self.getRadioMode = self._radioAxis.getMode
|
267
|
-
self.getEstimatedCor = self._radioAxis.getEstimatedCor
|
268
|
-
self.setEstimatedCor = self._radioAxis.setEstimatedCor
|
269
|
-
|
270
|
-
# set up
|
271
|
-
if self._axis_params.mode is AxisMode.manual:
|
272
|
-
self._controlWidget.setPosition(
|
273
|
-
self._axis_params.relative_cor_value,
|
274
|
-
self._axis_params.absolute_cor_value,
|
275
|
-
)
|
276
|
-
self._controlWidget._positionInfo.setAxis(self._axis_params)
|
277
|
-
|
278
|
-
# connect signal / slots
|
279
|
-
self._controlWidget.sigComputationRequest.connect(self.sigComputationRequested)
|
280
|
-
self._controlWidget.sigValidateRequest.connect(self.sigValidateRequest)
|
281
|
-
self._controlWidget.sigLockCORValueChanged.connect(self._CORValueLocked)
|
282
|
-
self._radioAxis.sigLockModeChanged.connect(self.sigLockModeChanged)
|
283
|
-
self._radioAxis.sigPositionChanged.connect(self._setPositionFrmTuple)
|
284
|
-
self._controlWidget._positionInfo.sigRelativeValueSet.connect(
|
285
|
-
self._forceRelativePosition
|
286
|
-
)
|
287
|
-
self._controlWidget._positionInfo.sigAbsolueValueSet.connect(
|
288
|
-
self._forceAbsolutePosition
|
289
|
-
)
|
290
|
-
|
291
|
-
# set up
|
292
|
-
self.addPlot(self._radioAxis)
|
293
|
-
self.setActiveWidget(self._radioAxis)
|
294
|
-
|
295
|
-
def _forceRelativePosition(self, value: float):
|
296
|
-
self.setMode(AxisMode.manual)
|
297
|
-
self.setPosition(
|
298
|
-
relative_value=value,
|
299
|
-
absolute_value=None,
|
300
|
-
)
|
301
|
-
|
302
|
-
def _forceAbsolutePosition(self, value: float):
|
303
|
-
self.setMode(AxisMode.manual)
|
304
|
-
self.setPosition(
|
305
|
-
relative_value=None,
|
306
|
-
absolute_value=value,
|
307
|
-
)
|
308
|
-
|
309
|
-
def setAutoUpdateEstimatedCor(self, value):
|
310
|
-
self._radioAxis.setUpdateAutomaticallyEstimatedCor(value)
|
311
|
-
|
312
|
-
def getAutoUpdateEstimatedCor(self):
|
313
|
-
return self._radioAxis.updateAutomaticallyEstimatedCor()
|
314
|
-
|
315
|
-
@deprecated(replacement="getRadioMode")
|
316
|
-
def getMode(self):
|
317
|
-
return self._radioAxis.getMode()
|
318
|
-
|
319
|
-
def manual_uses_full_image(self, value):
|
320
|
-
self._radioAxis.manual_uses_full_image(value)
|
321
|
-
|
322
|
-
def _modeChanged(self):
|
323
|
-
self.getAxis().mode = self.getMode()
|
324
|
-
self.getAxis().use_sinogram = self.useSinogram()
|
325
|
-
|
326
|
-
def setMode(self, mode):
|
327
|
-
mode = AxisMode.from_value(mode)
|
328
|
-
self.setActiveWidget(self._radioAxis)
|
329
|
-
self._radioAxis.setMode(mode)
|
330
|
-
self._axis_params.mode = mode
|
331
|
-
self.sigModeChanged.emit(mode.value)
|
332
|
-
|
333
|
-
def _CORValueLocked(self, lock):
|
334
|
-
if lock:
|
335
|
-
self.setMode(AxisMode.manual)
|
336
|
-
self.setModeLock(lock)
|
337
|
-
self.sigLockCORValueChanged.emit(lock)
|
338
|
-
|
339
|
-
def setActiveWidget(self, widget):
|
340
|
-
for iPlotWidget in range(self._plotWidgets.layout().count()):
|
341
|
-
plotWidget = self._plotWidgets.layout().itemAt(iPlotWidget).widget()
|
342
|
-
plotWidget.setVisible(widget == plotWidget)
|
343
|
-
self.setSettingsWidget(widget.getSettingsWidget())
|
344
|
-
|
345
|
-
def addPlot(self, plot):
|
346
|
-
self._plotWidgets.layout().addWidget(plot)
|
347
|
-
|
348
|
-
def setPlotWidget(self, plot):
|
349
|
-
self.setCentralWidget(plot)
|
350
|
-
|
351
|
-
def getPlotWidget(self):
|
352
|
-
return self.centralWidget()
|
353
|
-
|
354
|
-
def setSettingsWidget(self, widget):
|
355
|
-
self._settingsDockWidget.setWidget(widget)
|
356
|
-
|
357
|
-
def _setPositionFrmTuple(self, value):
|
358
|
-
self.setPosition(relative_value=value[0])
|
359
|
-
|
360
|
-
def setPosition(self, relative_value: float, absolute_value: float = None) -> None:
|
361
|
-
"""
|
362
|
-
|
363
|
-
:param float value_ref_tomwer: center of rotation value on tomwer
|
364
|
-
reference
|
365
|
-
:param float value_ref_nabu: center of rotation value on the nabu
|
366
|
-
reference
|
367
|
-
:raises: ValueError if the frm parameter is not recognized
|
368
|
-
"""
|
369
|
-
if (
|
370
|
-
absolute_value is None
|
371
|
-
and self._axis_params.frame_width is not None
|
372
|
-
and relative_value is not None
|
373
|
-
):
|
374
|
-
try:
|
375
|
-
absolute_value = relative_value + self._axis_params.frame_width / 2.0
|
376
|
-
except TypeError:
|
377
|
-
absolute_value = None
|
378
|
-
if (
|
379
|
-
relative_value is None
|
380
|
-
and self._axis_params.frame_width is not None
|
381
|
-
and absolute_value is not None
|
382
|
-
):
|
383
|
-
try:
|
384
|
-
relative_value = absolute_value - self._axis_params.frame_width / 2.0
|
385
|
-
except TypeError:
|
386
|
-
relative_value = None
|
387
|
-
self._controlWidget.setPosition(
|
388
|
-
value_ref_tomwer=relative_value, value_ref_nabu=absolute_value
|
389
|
-
)
|
390
|
-
if relative_value is not None:
|
391
|
-
self._radioAxis.setXShift(relative_value)
|
392
|
-
else:
|
393
|
-
self._radioAxis.resetShift()
|
394
|
-
|
395
|
-
def getAxis(self):
|
396
|
-
return self._axis_params
|
397
|
-
|
398
|
-
def _axisTypeChanged(self, selection):
|
399
|
-
self._axis_params.use_sinogram = False
|
400
|
-
self.setActiveWidget(self._radioAxis)
|
401
|
-
|
402
|
-
def setScan(self, scan: TomwerScanBase, set_position):
|
403
|
-
"""
|
404
|
-
set the gui for this scan
|
405
|
-
|
406
|
-
:param TomoBase scan:
|
407
|
-
"""
|
408
|
-
self._radioAxis.setScan(scan=scan)
|
409
|
-
if set_position is True and scan.axis_params is not None:
|
410
|
-
self.setPosition(
|
411
|
-
scan.axis_params.relative_cor_value, scan.axis_params.relative_cor_value
|
412
|
-
)
|
413
|
-
elif set_position is False:
|
414
|
-
if scan.dim_1 is not None:
|
415
|
-
# if absolute position is know and relative position not (in the case the user already define absolute position only):
|
416
|
-
has_absolute_val_already = not self._controlWidget._positionInfo._absolutePositionQLE.text().startswith(
|
417
|
-
(".", "?")
|
418
|
-
)
|
419
|
-
has_relative_val_already = not self._controlWidget._positionInfo._relativePositionQLE.text().startswith(
|
420
|
-
(".", "?")
|
421
|
-
)
|
422
|
-
if (
|
423
|
-
self.getMode() is AxisMode.manual
|
424
|
-
and has_absolute_val_already
|
425
|
-
and not has_relative_val_already
|
426
|
-
):
|
427
|
-
self._controlWidget._updateRelativePosition(width=scan.dim_1)
|
428
|
-
else:
|
429
|
-
self._controlWidget._updateAbsolutePosition(width=scan.dim_1)
|
430
|
-
|
431
|
-
def _computationRequested(self) -> None:
|
432
|
-
self.sigComputationRequested.emit()
|
433
|
-
|
434
|
-
def hideLockButton(self) -> None:
|
435
|
-
self._controlWidget.hideLockButton()
|
436
|
-
|
437
|
-
def hideApplyButton(self) -> None:
|
438
|
-
self._controlWidget.hideApplyButton()
|
439
|
-
|
440
|
-
def _setModeLockFrmSettings(self, lock):
|
441
|
-
old = self.blockSignals(True)
|
442
|
-
self._radioAxis._setModeLockFrmSettings(lock)
|
443
|
-
self.blockSignals(old)
|
444
|
-
|
445
|
-
def _setValueLockFrmSettings(self, lock):
|
446
|
-
old = self.blockSignals(True)
|
447
|
-
self.setValueLock(lock)
|
448
|
-
self.blockSignals(old)
|
449
|
-
|
450
|
-
def setModeLock(self, lock):
|
451
|
-
assert type(lock) is bool
|
452
|
-
self._radioAxis.setLocked(lock)
|
453
|
-
|
454
|
-
def isModeLock(self):
|
455
|
-
return self._radioAxis.isModeLock()
|
456
|
-
|
457
|
-
def isValueLock(self):
|
458
|
-
return self._controlWidget.isValueLock()
|
459
|
-
|
460
|
-
def setValueLock(self, lock):
|
461
|
-
self._controlWidget.setValueLock(lock)
|
462
|
-
|
463
|
-
def setReconsParams(self, recons_params):
|
464
|
-
self._axis_params = recons_params
|
465
|
-
self._radioAxis.setReconsParams(axis=recons_params)
|
466
|
-
if recons_params.mode is AxisMode.manual:
|
467
|
-
self._controlWidget.setPosition(
|
468
|
-
self._axis_params.relative_cor_value,
|
469
|
-
self._axis_params.absolute_cor_value,
|
470
|
-
)
|
471
|
-
|
472
|
-
|
473
|
-
class _ControlWidget(qt.QWidget):
|
474
|
-
"""
|
475
|
-
Widget to lock cor position or compute it or validate it and to
|
476
|
-
display the cor value
|
477
|
-
"""
|
478
|
-
|
479
|
-
sigComputationRequest = qt.Signal()
|
480
|
-
"""Signal emitted when user request a computation from the settings"""
|
481
|
-
|
482
|
-
sigValidateRequest = qt.Signal()
|
483
|
-
"""Signal emitted when user validate the current settings"""
|
484
|
-
|
485
|
-
sigLockCORValueChanged = qt.Signal(bool)
|
486
|
-
"""Signal emitted when the user lock the cor value. Param: True if lock"""
|
487
|
-
|
488
|
-
def __init__(self, parent):
|
489
|
-
qt.QWidget.__init__(self, parent)
|
490
|
-
self.setLayout(qt.QVBoxLayout())
|
491
|
-
|
492
|
-
# display 'center' information
|
493
|
-
self._positionInfo = _PositionInfoWidget(parent=self)
|
494
|
-
self.layout().addWidget(self._positionInfo)
|
495
|
-
|
496
|
-
self._buttons = qt.QWidget(parent=self)
|
497
|
-
self._buttons.setLayout(qt.QHBoxLayout())
|
498
|
-
self.layout().addWidget(self._buttons)
|
499
|
-
|
500
|
-
self._lockBut = PadlockButton(parent=self)
|
501
|
-
self._lockBut.setAutoDefault(False)
|
502
|
-
self._lockBut.setDefault(False)
|
503
|
-
|
504
|
-
self._buttons.layout().addWidget(self._lockBut)
|
505
|
-
self._lockLabel = qt.QLabel("lock cor value", parent=self)
|
506
|
-
self._buttons.layout().addWidget(self._lockLabel)
|
507
|
-
|
508
|
-
spacer = qt.QWidget(self)
|
509
|
-
spacer.setSizePolicy(qt.QSizePolicy.Expanding, qt.QSizePolicy.Minimum)
|
510
|
-
self._buttons.layout().addWidget(spacer)
|
511
|
-
|
512
|
-
self._computeBut = qt.QPushButton("compute", parent=self)
|
513
|
-
self._buttons.layout().addWidget(self._computeBut)
|
514
|
-
style = qt.QApplication.style()
|
515
|
-
applyIcon = style.standardIcon(qt.QStyle.SP_DialogApplyButton)
|
516
|
-
self._applyBut = qt.QPushButton(applyIcon, "validate", parent=self)
|
517
|
-
self._buttons.layout().addWidget(self._applyBut)
|
518
|
-
self.layout().addWidget(self._buttons)
|
519
|
-
|
520
|
-
# set up
|
521
|
-
self._positionInfo.setPosition(None, None)
|
522
|
-
|
523
|
-
# make connection
|
524
|
-
self._computeBut.pressed.connect(self._needComputation)
|
525
|
-
self._applyBut.pressed.connect(self._validate)
|
526
|
-
self._lockBut.sigLockChanged.connect(self._lockValueChanged)
|
527
|
-
|
528
|
-
def hideLockButton(self) -> None:
|
529
|
-
self._lockLabel.hide()
|
530
|
-
self._lockBut.hide()
|
531
|
-
|
532
|
-
def hideApplyButton(self) -> None:
|
533
|
-
self._applyBut.hide()
|
534
|
-
|
535
|
-
def _lockValueChanged(self):
|
536
|
-
self.sigLockCORValueChanged.emit(self._lockBut.isLocked())
|
537
|
-
self._computeBut.setEnabled(not self._lockBut.isLocked())
|
538
|
-
|
539
|
-
def _needComputation(self, *arg, **kwargs):
|
540
|
-
"""callback when the radio line changed"""
|
541
|
-
self.sigComputationRequest.emit()
|
542
|
-
|
543
|
-
def _validate(self):
|
544
|
-
self.sigValidateRequest.emit()
|
545
|
-
|
546
|
-
def setPosition(self, value_ref_tomwer, value_ref_nabu):
|
547
|
-
self._positionInfo.setPosition(
|
548
|
-
relative_cor=value_ref_tomwer, abs_cor=value_ref_nabu
|
549
|
-
)
|
550
|
-
|
551
|
-
def _updateAbsolutePosition(self, width):
|
552
|
-
self._positionInfo._updateAbsolutePosition(width=width)
|
553
|
-
|
554
|
-
def _updateRelativePosition(self, width):
|
555
|
-
self._positionInfo._updateRelativePosition(width=width)
|
556
|
-
|
557
|
-
def isValueLock(self):
|
558
|
-
return self._lockBut.isLocked()
|
559
|
-
|
560
|
-
def setValueLock(self, lock):
|
561
|
-
self._lockBut.setLock(lock)
|
562
|
-
|
563
|
-
|
564
|
-
class _PositionInfoValidator(qt.QDoubleValidator):
|
565
|
-
def validate(self, a0: str, a1: int):
|
566
|
-
if "..." in a0 or a0 == "?":
|
567
|
-
return (qt.QDoubleValidator.Acceptable, a0, a1)
|
568
|
-
else:
|
569
|
-
return super().validate(a0, a1)
|
570
|
-
|
571
|
-
|
572
|
-
class _PositionInfoWidget(qt.QWidget):
|
573
|
-
"""Widget used to display information relative to the current position"""
|
574
|
-
|
575
|
-
sigRelativeValueSet = qt.Signal(float)
|
576
|
-
"""Emit when the user define manually the relative value"""
|
577
|
-
sigAbsolueValueSet = qt.Signal(float)
|
578
|
-
"""Emit when the user define manually the absolute value"""
|
579
|
-
|
580
|
-
def __init__(self, parent, axis=None):
|
581
|
-
self._axis = None
|
582
|
-
self._defaultBackgroundColor = None
|
583
|
-
qt.QWidget.__init__(self, parent)
|
584
|
-
self.setLayout(qt.QGridLayout())
|
585
|
-
centerLabel = qt.QLabel("center", parent=self)
|
586
|
-
centerLabel.setSizePolicy(qt.QSizePolicy.Minimum, qt.QSizePolicy.Minimum)
|
587
|
-
font = centerLabel.font()
|
588
|
-
font.setBold(True)
|
589
|
-
centerLabel.setFont(font)
|
590
|
-
|
591
|
-
self.layout().addWidget(centerLabel, 0, 0, 1, 1)
|
592
|
-
self.layout().addWidget(qt.QLabel(" (relative):"), 0, 1, 1, 1)
|
593
|
-
|
594
|
-
self._relativePositionQLE = qt.QLineEdit("", parent=self)
|
595
|
-
self._positionValidator = _PositionInfoValidator(self)
|
596
|
-
self._relativePositionQLE.setValidator(self._positionValidator)
|
597
|
-
self._relativePositionQLE.setSizePolicy(
|
598
|
-
qt.QSizePolicy.Expanding, qt.QSizePolicy.Minimum
|
599
|
-
)
|
600
|
-
self._relativePositionQLE.setStyleSheet("color: red")
|
601
|
-
self.layout().addWidget(self._relativePositionQLE, 0, 2, 1, 1)
|
602
|
-
|
603
|
-
centerLabel = qt.QLabel("center", parent=self)
|
604
|
-
centerLabel.setSizePolicy(qt.QSizePolicy.Minimum, qt.QSizePolicy.Minimum)
|
605
|
-
font = centerLabel.font()
|
606
|
-
font.setBold(False)
|
607
|
-
centerLabel.setFont(font)
|
608
|
-
|
609
|
-
self.layout().addWidget(centerLabel, 1, 0, 1, 1)
|
610
|
-
self.layout().addWidget(qt.QLabel(" (absolute):"), 1, 1, 1, 1)
|
611
|
-
self._absolutePositionQLE = qt.QLineEdit("", parent=self)
|
612
|
-
self._absolutePositionQLE.setValidator(self._positionValidator)
|
613
|
-
self._absolutePositionQLE.setSizePolicy(
|
614
|
-
qt.QSizePolicy.Expanding, qt.QSizePolicy.Minimum
|
615
|
-
)
|
616
|
-
self._absolutePositionQLE.setStyleSheet("color: #ff8c00")
|
617
|
-
self.layout().addWidget(self._absolutePositionQLE, 1, 2, 1, 1)
|
618
|
-
|
619
|
-
if axis:
|
620
|
-
self.setAxis(axis)
|
621
|
-
|
622
|
-
# connect signal / slot
|
623
|
-
self._relativePositionQLE.textEdited.connect(
|
624
|
-
self._userStartEditingRelativePosition
|
625
|
-
)
|
626
|
-
self._relativePositionQLE.editingFinished.connect(
|
627
|
-
self._userUpdatedRelativePosition
|
628
|
-
)
|
629
|
-
self._absolutePositionQLE.textEdited.connect(
|
630
|
-
self._userStartEditingAbsolutePosition
|
631
|
-
)
|
632
|
-
|
633
|
-
self._absolutePositionQLE.editingFinished.connect(
|
634
|
-
self._userUpdatedAbsolutePosition
|
635
|
-
)
|
636
|
-
|
637
|
-
def _getDefaultBackgroundColor(self):
|
638
|
-
if self._defaultBackgroundColor is None:
|
639
|
-
self._defaultBackgroundColor = self.palette().color(
|
640
|
-
self._absolutePositionQLE.backgroundRole()
|
641
|
-
)
|
642
|
-
return self._defaultBackgroundColor
|
643
|
-
|
644
|
-
def _userStartEditingRelativePosition(self, *args, **kwargs):
|
645
|
-
palette = self.palette()
|
646
|
-
palette.setColor(
|
647
|
-
self._relativePositionQLE.backgroundRole(), EDITING_BACKGROUND_COLOR
|
648
|
-
)
|
649
|
-
self._relativePositionQLE.setPalette(palette)
|
650
|
-
|
651
|
-
def _userStartEditingAbsolutePosition(self, *args, **kwargs):
|
652
|
-
palette = self.palette()
|
653
|
-
palette.setColor(
|
654
|
-
self._absolutePositionQLE.backgroundRole(), EDITING_BACKGROUND_COLOR
|
655
|
-
)
|
656
|
-
self._absolutePositionQLE.setPalette(palette)
|
657
|
-
|
658
|
-
def _userUpdatedRelativePosition(self, *args, **kwargs):
|
659
|
-
palette = self.palette()
|
660
|
-
palette.setColor(
|
661
|
-
self._relativePositionQLE.backgroundRole(),
|
662
|
-
self._getDefaultBackgroundColor(),
|
663
|
-
)
|
664
|
-
self._relativePositionQLE.setPalette(palette)
|
665
|
-
if self._relativePositionQLE.text().startswith((".", "?")):
|
666
|
-
return
|
667
|
-
else:
|
668
|
-
value = float(self._relativePositionQLE.text())
|
669
|
-
# make sure we only emit the signal if the value changed (and when the Qline has been edited).
|
670
|
-
if self._axis.relative_cor_value is None or (
|
671
|
-
self._axis is not None
|
672
|
-
and not numpy.isclose(value, self._axis.relative_cor_value, atol=1e-3)
|
673
|
-
):
|
674
|
-
self.sigRelativeValueSet.emit(value)
|
675
|
-
|
676
|
-
def _userUpdatedAbsolutePosition(self, *args, **kwargs):
|
677
|
-
palette = self.palette()
|
678
|
-
palette.setColor(
|
679
|
-
self._absolutePositionQLE.backgroundRole(),
|
680
|
-
self._getDefaultBackgroundColor(),
|
681
|
-
)
|
682
|
-
self._absolutePositionQLE.setPalette(palette)
|
683
|
-
if self._absolutePositionQLE.text().startswith((".", "?")):
|
684
|
-
return
|
685
|
-
else:
|
686
|
-
value = float(self._absolutePositionQLE.text())
|
687
|
-
# make sure we only emit the signal if the value changed (and when the Qline has been edited).
|
688
|
-
if self._axis.absolute_cor_value is None or (
|
689
|
-
self._axis is not None
|
690
|
-
and not numpy.isclose(value, self._axis.absolute_cor_value, atol=1e-3)
|
691
|
-
):
|
692
|
-
self.sigAbsolueValueSet.emit(value)
|
693
|
-
|
694
|
-
def setAxis(self, axis):
|
695
|
-
assert isinstance(axis, QAxisRP)
|
696
|
-
if axis == self._axis:
|
697
|
-
return
|
698
|
-
self._axis = axis
|
699
|
-
|
700
|
-
def getPosition(self):
|
701
|
-
return float(self._relativePositionQLE.text())
|
702
|
-
|
703
|
-
def setPosition(self, relative_cor: Optional[float], abs_cor: Optional[float]):
|
704
|
-
if relative_cor is None:
|
705
|
-
self._relativePositionQLE.setText("?")
|
706
|
-
elif isinstance(relative_cor, str):
|
707
|
-
self._relativePositionQLE.setText(relative_cor)
|
708
|
-
else:
|
709
|
-
self._relativePositionQLE.setText(f"{relative_cor:.3f}")
|
710
|
-
if abs_cor is None:
|
711
|
-
self._absolutePositionQLE.setText("?")
|
712
|
-
else:
|
713
|
-
self._absolutePositionQLE.setText(f"{abs_cor:.3f}")
|
714
|
-
|
715
|
-
def _updateAbsolutePosition(self, width):
|
716
|
-
if width is not None:
|
717
|
-
try:
|
718
|
-
rel_value = float(self._relativePositionQLE.text())
|
719
|
-
except Exception:
|
720
|
-
return
|
721
|
-
else:
|
722
|
-
abs_value = float(rel_value) + width / 2.0
|
723
|
-
self._absolutePositionQLE.setText(str(abs_value))
|
724
|
-
|
725
|
-
def _updateRelativePosition(self, width):
|
726
|
-
if width is not None:
|
727
|
-
try:
|
728
|
-
abs_value = float(self._absolutePositionQLE.text())
|
729
|
-
except Exception:
|
730
|
-
return
|
731
|
-
else:
|
732
|
-
rel_value = float(abs_value) - width / 2.0
|
733
|
-
self._relativePositionQLE.setText(str(rel_value))
|