tomwer 1.3.27__py3-none-any.whl → 1.4.0rc0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- orangecontrib/tomwer/orange/managedprocess.py +1 -29
- orangecontrib/tomwer/orange/settings.py +2 -28
- orangecontrib/tomwer/tests/TestAcquisition.py +220 -0
- orangecontrib/tomwer/tutorials/append_raw_darks_and_flats_frames_to_NXtomos.ows +2 -2
- orangecontrib/tomwer/tutorials/copy_reduced_darks_and_flats_meth1.ows +1 -1
- orangecontrib/tomwer/tutorials/{icat_publication.ows → drac_publication.ows} +7 -21
- orangecontrib/tomwer/tutorials/id16b/ID16b_full_volume.ows +22 -0
- orangecontrib/tomwer/tutorials/id16b/ID16b_insitu.ows +302 -0
- orangecontrib/tomwer/tutorials/id16b/ID16b_normalization.ows +218 -0
- orangecontrib/tomwer/tutorials/simple_volume_to_slurm_reconstruction.ows +29 -24
- orangecontrib/tomwer/tutorials/test_cor.ows +19 -0
- orangecontrib/tomwer/tutorials/volume_casting_on_slurm.ows +54 -0
- orangecontrib/tomwer/widgets/__init__.py +3 -5
- orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py +35 -54
- orangecontrib/tomwer/widgets/cluster/SlurmClusterOW.py +1 -31
- orangecontrib/tomwer/widgets/control/AdvancementOW.py +1 -29
- orangecontrib/tomwer/widgets/control/DataDiscoveryOW.py +5 -4
- orangecontrib/tomwer/widgets/control/DataListenerOW.py +1 -29
- orangecontrib/tomwer/widgets/control/DataSelectorOW.py +11 -30
- orangecontrib/tomwer/widgets/control/DataTransfertOW.py +2 -28
- orangecontrib/tomwer/widgets/control/DataValidatorOW.py +1 -28
- orangecontrib/tomwer/widgets/control/DataWatcherOW.py +1 -28
- orangecontrib/tomwer/widgets/control/EDF2NXTomomillOW.py +48 -51
- orangecontrib/tomwer/widgets/control/EmailOW.py +12 -2
- orangecontrib/tomwer/widgets/control/FilterOW.py +1 -28
- orangecontrib/tomwer/widgets/control/NXTomomillOW.py +37 -53
- orangecontrib/tomwer/widgets/control/NXtomoConcatenate.py +21 -20
- orangecontrib/tomwer/widgets/control/NotifierOW.py +9 -28
- orangecontrib/tomwer/widgets/control/ReduceDarkFlatSelectorOW.py +3 -2
- orangecontrib/tomwer/widgets/control/SingleTomoObjOW.py +1 -27
- orangecontrib/tomwer/widgets/control/TimerOW.py +9 -28
- orangecontrib/tomwer/widgets/control/TomoObjSeriesOW.py +58 -0
- orangecontrib/tomwer/widgets/control/VolumeSelector.py +8 -30
- orangecontrib/tomwer/widgets/control/icons/nxtomomill.svg +173 -119
- orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.png +0 -0
- orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.svg +55 -195
- orangecontrib/tomwer/widgets/control/icons/{tomoobjserie.svg → tomoobjseries.svg} +2 -2
- orangecontrib/tomwer/widgets/dataportal/PublishProcessedDataOW.py +172 -0
- orangecontrib/tomwer/widgets/{icat → dataportal}/__init__.py +2 -2
- orangecontrib/tomwer/widgets/debugtools/DatasetGeneratorOW.py +2 -29
- orangecontrib/tomwer/widgets/debugtools/ObjectInspectorOW.py +1 -29
- orangecontrib/tomwer/widgets/edit/DarkFlatPatchOW.py +48 -73
- orangecontrib/tomwer/widgets/edit/ImageKeyEditorOW.py +48 -75
- orangecontrib/tomwer/widgets/edit/ImageKeyUpgraderOW.py +5 -30
- orangecontrib/tomwer/widgets/edit/NXtomoEditorOW.py +51 -52
- orangecontrib/tomwer/widgets/other/PythonScriptOW.py +22 -10
- orangecontrib/tomwer/widgets/reconstruction/AxisOW.py +48 -49
- orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py +22 -68
- orangecontrib/tomwer/widgets/reconstruction/DarkRefAndCopyOW.py +3 -30
- orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py +21 -19
- orangecontrib/tomwer/widgets/reconstruction/NabuOW.py +7 -70
- orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py +40 -85
- orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py +15 -40
- orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py +13 -35
- orangecontrib/tomwer/widgets/reconstruction/SinoNormOW.py +2 -30
- orangecontrib/tomwer/widgets/stitching/ZStitchingConfigOW.py +11 -11
- orangecontrib/tomwer/widgets/utils.py +2 -29
- orangecontrib/tomwer/widgets/visualization/DataViewerOW.py +1 -27
- orangecontrib/tomwer/widgets/visualization/DiffViewerOW.py +1 -27
- orangecontrib/tomwer/widgets/visualization/NXtomoMetadataViewerOW.py +1 -1
- orangecontrib/tomwer/widgets/visualization/RadioStackOW.py +2 -28
- orangecontrib/tomwer/widgets/visualization/SampleMovedOW.py +1 -27
- orangecontrib/tomwer/widgets/visualization/SinogramViewerOW.py +1 -27
- orangecontrib/tomwer/widgets/visualization/SliceStackOW.py +2 -28
- tomwer/__init__.py +3 -28
- tomwer/__main__.py +8 -4
- tomwer/app/__init__.py +2 -0
- tomwer/app/axis.py +8 -7
- tomwer/app/canvas.py +23 -29
- tomwer/app/canvas_launcher/config.py +14 -102
- tomwer/app/canvas_launcher/environ.py +5 -8
- tomwer/app/canvas_launcher/mainwindow.py +175 -69
- tomwer/app/canvas_launcher/splash.py +1 -3
- tomwer/app/canvas_launcher/utils.py +47 -0
- tomwer/app/canvas_launcher/widgetsscheme.py +3 -10
- tomwer/app/diffframe.py +2 -0
- tomwer/app/imagekeyeditor.py +2 -1
- tomwer/app/imagekeyupgrader.py +2 -0
- tomwer/app/multicor.py +5 -2
- tomwer/app/multipag.py +7 -4
- tomwer/app/nabuapp.py +2 -1
- tomwer/app/nxtomoeditor.py +17 -12
- tomwer/app/patchrawdarkflat.py +2 -0
- tomwer/app/radiostack.py +3 -2
- tomwer/app/reducedarkflat.py +3 -0
- tomwer/app/samplemoved.py +2 -0
- tomwer/app/scanviewer.py +2 -0
- tomwer/app/sinogramviewer.py +2 -0
- tomwer/app/slicestack.py +11 -13
- tomwer/app/stitching/common.py +431 -0
- tomwer/app/stopdatalistener.py +3 -0
- tomwer/app/ystitching.py +26 -0
- tomwer/app/zstitching.py +8 -363
- tomwer/core/__init__.py +2 -28
- tomwer/core/cluster/__init__.py +3 -0
- tomwer/core/cluster/cluster.py +10 -26
- tomwer/core/futureobject.py +17 -43
- tomwer/core/log/__init__.py +2 -0
- tomwer/core/log/processlog.py +0 -28
- tomwer/core/process/cluster/supervisor.py +52 -34
- tomwer/core/process/conditions/filters.py +3 -28
- tomwer/core/process/control/datalistener/datalistener.py +7 -75
- tomwer/core/process/control/datalistener/rpcserver.py +8 -38
- tomwer/core/process/control/datawatcher/datawatcher.py +11 -40
- tomwer/core/process/control/datawatcher/datawatcherobserver.py +30 -64
- tomwer/core/process/control/datawatcher/datawatcherprocess.py +11 -32
- tomwer/core/process/control/datawatcher/edfdwprocess.py +2 -27
- tomwer/core/process/control/datawatcher/hdf5dwprocess.py +1 -26
- tomwer/core/process/control/datawatcher/status.py +1 -26
- tomwer/core/process/control/emailnotifier.py +11 -23
- tomwer/core/process/control/nxtomoconcatenate.py +20 -18
- tomwer/core/process/control/nxtomomill.py +9 -44
- tomwer/core/process/control/scanlist.py +0 -27
- tomwer/core/process/control/scantransfer.py +15 -13
- tomwer/core/process/control/scanvalidator.py +4 -30
- tomwer/core/process/control/{test → tests}/test_concatenate_nxtomos.py +5 -5
- tomwer/core/process/control/timer.py +1 -27
- tomwer/core/process/control/tomoobjseries.py +12 -0
- tomwer/core/process/drac/binning.py +37 -0
- tomwer/core/process/drac/dracbase.py +170 -0
- tomwer/core/process/drac/gallery.py +109 -0
- tomwer/core/process/drac/output.py +12 -0
- tomwer/core/process/drac/processeddataset.py +147 -0
- tomwer/core/process/drac/publish.py +118 -0
- tomwer/core/process/drac/rawdataset.py +142 -0
- tomwer/core/process/drac/tests/test_gallery.py +71 -0
- tomwer/core/process/drac/tests/test_icat_processed_dataset.py +80 -0
- tomwer/core/process/drac/tests/test_icat_raw_dataset.py +90 -0
- tomwer/core/process/edit/darkflatpatch.py +1 -28
- tomwer/core/process/edit/imagekeyeditor.py +4 -32
- tomwer/core/process/edit/nxtomoeditor.py +307 -0
- tomwer/core/process/edit/tests/test_darkflatpatch.py +243 -0
- tomwer/core/process/edit/tests/test_imagekey_editor.py +99 -0
- tomwer/core/process/output.py +9 -2
- tomwer/core/process/reconstruction/__init__.py +0 -26
- tomwer/core/process/reconstruction/axis/anglemode.py +1 -29
- tomwer/core/process/reconstruction/axis/axis.py +63 -111
- tomwer/core/process/reconstruction/axis/mode.py +5 -3
- tomwer/core/process/reconstruction/axis/params.py +5 -146
- tomwer/core/process/reconstruction/axis/projectiontype.py +0 -28
- tomwer/core/process/reconstruction/darkref/darkrefs.py +14 -39
- tomwer/core/process/reconstruction/darkref/darkrefscopy.py +7 -39
- tomwer/core/process/reconstruction/darkref/params.py +1 -28
- tomwer/core/process/reconstruction/nabu/castvolume.py +19 -34
- tomwer/core/process/reconstruction/nabu/nabucommon.py +18 -43
- tomwer/core/process/reconstruction/nabu/nabuscores.py +47 -48
- tomwer/core/process/reconstruction/nabu/nabuslices.py +59 -105
- tomwer/core/process/reconstruction/nabu/nabuvolume.py +44 -70
- tomwer/core/process/reconstruction/nabu/plane.py +10 -0
- tomwer/core/process/reconstruction/nabu/settings.py +1 -28
- tomwer/core/process/reconstruction/nabu/target.py +0 -28
- tomwer/core/process/reconstruction/nabu/test/test_castvolume.py +116 -0
- tomwer/core/process/reconstruction/nabu/test/test_nabu_utils.py +277 -0
- tomwer/core/process/reconstruction/nabu/test/test_nabunormalization.py +199 -0
- tomwer/core/process/reconstruction/nabu/utils.py +11 -60
- tomwer/core/process/reconstruction/normalization/normalization.py +2 -32
- tomwer/core/process/reconstruction/normalization/params.py +3 -35
- tomwer/core/process/reconstruction/output.py +14 -19
- tomwer/core/process/reconstruction/paramsbase.py +4 -33
- tomwer/core/process/reconstruction/saaxis/params.py +5 -33
- tomwer/core/process/reconstruction/saaxis/saaxis.py +18 -47
- tomwer/core/process/reconstruction/sadeltabeta/params.py +2 -31
- tomwer/core/process/reconstruction/sadeltabeta/sadeltabeta.py +16 -44
- tomwer/core/process/reconstruction/scores/params.py +9 -39
- tomwer/core/process/reconstruction/scores/scores.py +10 -42
- tomwer/core/process/reconstruction/tests/__init__.py +0 -0
- tomwer/core/process/reconstruction/tests/test_axis.py +46 -0
- tomwer/core/process/reconstruction/tests/test_darkref.py +33 -0
- tomwer/core/process/reconstruction/{test → tests}/test_saaxis.py +1 -27
- tomwer/core/process/reconstruction/tests/test_sadeltabeta.py +48 -0
- tomwer/core/process/script/python.py +1 -27
- tomwer/core/process/script/tests/test_script.py +41 -0
- tomwer/core/process/stitching/metadataholder.py +5 -4
- tomwer/core/process/stitching/nabustitcher.py +35 -5
- tomwer/core/process/stitching/tests/test_metadataholder.py +17 -0
- tomwer/core/process/task.py +20 -63
- tomwer/core/process/tests/__init__.py +0 -0
- tomwer/core/process/{test → tests}/test_axis.py +1 -79
- tomwer/core/process/{test → tests}/test_conditions.py +1 -28
- tomwer/core/process/{test → tests}/test_dark_and_flat.py +1 -27
- tomwer/core/process/{test → tests}/test_data_listener.py +1 -27
- tomwer/core/process/{test → tests}/test_data_transfer.py +2 -28
- tomwer/core/process/{test → tests}/test_data_watcher.py +1 -27
- tomwer/core/process/{test → tests}/test_nabu.py +4 -33
- tomwer/core/process/{test → tests}/test_normalization.py +1 -26
- tomwer/core/process/{test → tests}/test_timer.py +1 -27
- tomwer/core/process/utils.py +2 -31
- tomwer/core/process/visualization/dataviewer.py +1 -26
- tomwer/core/process/visualization/diffviewer.py +1 -26
- tomwer/core/process/visualization/imagestackviewer.py +0 -26
- tomwer/core/process/visualization/radiostack.py +0 -26
- tomwer/core/process/visualization/samplemoved.py +0 -28
- tomwer/core/process/visualization/sinogramviewer.py +0 -27
- tomwer/core/process/visualization/slicestack.py +0 -28
- tomwer/core/process/visualization/tests/test_data_viewer.py +12 -0
- tomwer/core/process/visualization/tests/test_diff_viewer.py +12 -0
- tomwer/core/process/visualization/tests/test_image_stack_viewer.py +14 -0
- tomwer/core/process/visualization/tests/test_radio_stack.py +12 -0
- tomwer/core/process/visualization/tests/test_sample_moved.py +14 -0
- tomwer/core/process/visualization/tests/test_sinogram_viewer.py +13 -0
- tomwer/core/process/visualization/tests/test_slice_stack.py +13 -0
- tomwer/core/process/visualization/tests/test_volume_viewer.py +12 -0
- tomwer/core/process/visualization/volumeviewer.py +0 -29
- tomwer/core/scan/__init__.py +3 -27
- tomwer/core/scan/blissscan.py +5 -34
- tomwer/core/scan/edfscan.py +19 -53
- tomwer/core/scan/hdf5scan.py +2 -2
- tomwer/core/scan/nxtomoscan.py +46 -54
- tomwer/core/scan/scanbase.py +104 -200
- tomwer/core/scan/scanfactory.py +11 -41
- tomwer/core/scan/tests/__init__.py +0 -0
- tomwer/core/scan/tests/test_edf.py +25 -0
- tomwer/core/scan/tests/test_future_scan.py +35 -0
- tomwer/core/scan/tests/test_nxtomoscan.py +143 -0
- tomwer/core/scan/{test → tests}/test_process_registration.py +1 -28
- tomwer/core/settings.py +18 -40
- tomwer/core/tests/__init__.py +0 -0
- tomwer/core/tests/test_scanutils.py +26 -0
- tomwer/core/{test → tests}/test_utils.py +1 -28
- tomwer/core/tomwer_object.py +4 -0
- tomwer/core/utils/__init__.py +2 -0
- tomwer/core/utils/char.py +0 -28
- tomwer/core/utils/deprecation.py +12 -38
- tomwer/core/utils/dictutils.py +1 -3
- tomwer/core/utils/ftseriesutils.py +1 -27
- tomwer/core/utils/gpu.py +0 -28
- tomwer/core/utils/image.py +8 -39
- tomwer/core/utils/locker.py +1 -28
- tomwer/core/utils/logconfig.py +0 -27
- tomwer/core/utils/normalization.py +4 -31
- tomwer/core/utils/nxtomoutils.py +8 -38
- tomwer/core/utils/resource.py +0 -26
- tomwer/core/utils/scanutils.py +23 -52
- tomwer/core/utils/slurm.py +7 -30
- tomwer/core/utils/spec.py +6 -6
- tomwer/core/utils/tests/__init__.py +0 -0
- tomwer/core/utils/tests/test_image.py +30 -0
- tomwer/core/utils/tests/test_nxtomo.py +38 -0
- tomwer/core/utils/tests/test_scan_utils.py +46 -0
- tomwer/core/utils/tests/test_time.py +6 -0
- tomwer/core/utils/threads.py +0 -26
- tomwer/core/utils/time.py +0 -27
- tomwer/core/volume/__init__.py +4 -0
- tomwer/core/volume/edfvolume.py +1 -28
- tomwer/core/volume/hdf5volume.py +1 -28
- tomwer/core/volume/jp2kvolume.py +1 -27
- tomwer/core/volume/rawvolume.py +1 -28
- tomwer/core/volume/tests/test_volumes.py +21 -0
- tomwer/core/volume/tiffvolume.py +1 -28
- tomwer/core/volume/volumebase.py +5 -0
- tomwer/core/volume/volumefactory.py +7 -33
- tomwer/gui/__init__.py +0 -28
- tomwer/gui/cluster/__init__.py +2 -0
- tomwer/gui/cluster/slurm.py +297 -95
- tomwer/gui/cluster/supervisor.py +1 -27
- tomwer/gui/cluster/tests/__init__.py +0 -0
- tomwer/gui/cluster/{test → tests}/test_cluster.py +21 -26
- tomwer/gui/cluster/{test → tests}/test_supervisor.py +1 -27
- tomwer/gui/conditions/__init__.py +2 -0
- tomwer/gui/conditions/filter.py +1 -26
- tomwer/gui/configuration/__init__.py +2 -0
- tomwer/gui/control/__init__.py +2 -0
- tomwer/gui/control/actions.py +2 -28
- tomwer/gui/control/datadiscovery.py +4 -3
- tomwer/gui/control/datalist.py +64 -69
- tomwer/gui/control/datalistener.py +1 -39
- tomwer/gui/control/datareacheractions.py +1 -28
- tomwer/gui/control/datatransfert.py +2 -29
- tomwer/gui/control/datavalidator.py +3 -37
- tomwer/gui/control/datawatcher/__init__.py +0 -28
- tomwer/gui/control/datawatcher/configuration.py +1 -28
- tomwer/gui/control/datawatcher/datawatcher.py +3 -32
- tomwer/gui/control/datawatcher/datawatcherobserver.py +2 -28
- tomwer/gui/control/history.py +5 -35
- tomwer/gui/control/nxtomomill.py +3 -30
- tomwer/gui/control/observations.py +61 -55
- tomwer/gui/control/reducedarkflatselector.py +24 -20
- tomwer/gui/control/scanselectorwidget.py +2 -28
- tomwer/gui/control/selectorwidgetbase.py +17 -17
- tomwer/gui/control/series/__init__.py +0 -0
- tomwer/gui/control/{serie/seriecreator.py → series/seriescreator.py} +214 -235
- tomwer/gui/control/series/serieswaiter.py +0 -0
- tomwer/gui/control/series/test/test_creator.py +424 -0
- tomwer/gui/control/series/test/test_nxtomo_concatenate.py +21 -0
- tomwer/gui/control/singletomoobj.py +1 -1
- tomwer/gui/control/tests/__init__.py +0 -0
- tomwer/gui/control/tests/test_datalist.py +47 -0
- tomwer/gui/control/{test → tests}/test_datalistener.py +1 -28
- tomwer/gui/control/tests/test_datavalidator.py +27 -0
- tomwer/gui/control/{test → tests}/test_inputwidget.py +1 -27
- tomwer/gui/control/tests/test_process_manager.py +38 -0
- tomwer/gui/control/tests/test_scan_observations.py +23 -0
- tomwer/gui/control/tests/test_scanselector.py +42 -0
- tomwer/gui/control/{test → tests}/test_scanvalidator.py +1 -27
- tomwer/gui/control/{test → tests}/test_volume_dialog.py +2 -30
- tomwer/gui/control/{test → tests}/test_volumeselector.py +1 -27
- tomwer/gui/control/volumeselectorwidget.py +2 -30
- tomwer/gui/dataportal/__init__.py +2 -0
- tomwer/gui/{icat → dataportal}/createscreenshots.py +3 -2
- tomwer/gui/dataportal/gallery.py +133 -0
- tomwer/gui/dataportal/outputformat.py +0 -0
- tomwer/gui/dataportal/publish.py +96 -0
- tomwer/gui/dataportal/tests/test_create_screenshots_gui.py +23 -0
- tomwer/gui/dataportal/tests/test_gallery_gui.py +21 -0
- tomwer/gui/debugtools/__init__.py +2 -0
- tomwer/gui/debugtools/datasetgenerator.py +1 -30
- tomwer/gui/debugtools/objectinspector.py +1 -29
- tomwer/gui/dialog/QDataDialog.py +89 -0
- tomwer/gui/{qfolderdialog.py → dialog/QVolumeDialog.py} +8 -107
- tomwer/gui/dialog/__init__.py +1 -0
- tomwer/gui/edit/__init__.py +2 -0
- tomwer/gui/edit/dkrfpatch.py +52 -87
- tomwer/gui/edit/imagekeyeditor.py +18 -54
- tomwer/gui/edit/nxtomoeditor.py +113 -300
- tomwer/gui/edit/nxtomowarmer.py +3 -2
- tomwer/gui/edit/tests/__init__.py +0 -0
- tomwer/gui/edit/{test → tests}/test_dkrf_patch.py +3 -29
- tomwer/gui/edit/{test → tests}/test_image_key_editor.py +1 -27
- tomwer/gui/edit/{test → tests}/test_nx_editor.py +45 -23
- tomwer/gui/icons.py +28 -66
- tomwer/gui/illustrations.py +4 -34
- tomwer/gui/imagefromfile.py +5 -30
- tomwer/gui/metadataloader.py +36 -0
- tomwer/gui/qconfigfile.py +3 -0
- tomwer/gui/qlefilesystem.py +3 -0
- tomwer/gui/reconstruction/__init__.py +2 -0
- tomwer/gui/reconstruction/axis/AxisMainWindow.py +264 -0
- tomwer/gui/reconstruction/axis/AxisOptionsWidget.py +153 -0
- tomwer/gui/reconstruction/axis/AxisSettingsWidget.py +776 -0
- tomwer/gui/reconstruction/axis/AxisWidget.py +526 -0
- tomwer/gui/reconstruction/axis/CalculationWidget.py +374 -0
- tomwer/gui/reconstruction/axis/CompareImages.py +11 -44
- tomwer/gui/reconstruction/axis/ControlWidget.py +277 -0
- tomwer/gui/reconstruction/axis/InputWidget.py +491 -0
- tomwer/gui/reconstruction/axis/ManualFramesSelection.py +168 -0
- tomwer/gui/reconstruction/axis/__init__.py +2 -2
- tomwer/gui/reconstruction/darkref/__init__.py +0 -27
- tomwer/gui/reconstruction/darkref/darkrefcopywidget.py +5 -34
- tomwer/gui/reconstruction/darkref/darkrefwidget.py +1 -27
- tomwer/gui/reconstruction/nabu/castvolume.py +40 -59
- tomwer/gui/reconstruction/nabu/check.py +7 -33
- tomwer/gui/reconstruction/nabu/nabuconfig/base.py +7 -34
- tomwer/gui/reconstruction/nabu/nabuconfig/ctf.py +6 -5
- tomwer/gui/reconstruction/nabu/nabuconfig/nabuconfig.py +10 -69
- tomwer/gui/reconstruction/nabu/nabuconfig/output.py +3 -47
- tomwer/gui/reconstruction/nabu/nabuconfig/phase.py +54 -36
- tomwer/gui/reconstruction/nabu/nabuconfig/preprocessing.py +103 -54
- tomwer/gui/reconstruction/nabu/nabuconfig/reconstruction.py +116 -65
- tomwer/gui/reconstruction/nabu/nabuflow.py +31 -61
- tomwer/gui/reconstruction/nabu/platform.py +94 -0
- tomwer/gui/reconstruction/nabu/slices.py +81 -45
- tomwer/gui/reconstruction/nabu/slurm.py +1 -27
- tomwer/gui/reconstruction/nabu/test/test_cast_volume.py +82 -0
- tomwer/gui/reconstruction/nabu/test/test_check.py +66 -0
- tomwer/gui/reconstruction/nabu/test/test_ctf.py +46 -0
- tomwer/gui/reconstruction/nabu/test/test_helical.py +21 -0
- tomwer/gui/reconstruction/nabu/test/test_nabu_preprocessing.py +81 -0
- tomwer/gui/reconstruction/nabu/volume.py +62 -90
- tomwer/gui/reconstruction/normalization/intensity.py +5 -32
- tomwer/gui/reconstruction/normalization/test/test_intensity.py +89 -0
- tomwer/gui/reconstruction/saaxis/corrangeselector.py +16 -49
- tomwer/gui/reconstruction/saaxis/dimensionwidget.py +56 -96
- tomwer/gui/reconstruction/saaxis/saaxis.py +17 -38
- tomwer/gui/reconstruction/saaxis/sliceselector.py +8 -39
- tomwer/gui/reconstruction/sadeltabeta/saadeltabeta.py +19 -37
- tomwer/gui/reconstruction/scores/control.py +2 -30
- tomwer/gui/reconstruction/scores/scoreplot.py +19 -48
- tomwer/gui/reconstruction/tests/__init__.py +0 -0
- tomwer/gui/reconstruction/{test → tests}/test_axis.py +23 -49
- tomwer/gui/reconstruction/{test → tests}/test_nabu.py +8 -31
- tomwer/gui/reconstruction/{test → tests}/test_saaxis.py +10 -37
- tomwer/gui/reconstruction/{test → tests}/test_sadeltabeta.py +1 -26
- tomwer/gui/samplemoved/__init__.py +2 -30
- tomwer/gui/samplemoved/selectiontable.py +3 -33
- tomwer/gui/settings.py +7 -0
- tomwer/gui/stackplot.py +33 -661
- tomwer/gui/stacks.py +261 -135
- tomwer/gui/stitching/SingleAxisStitchingWidget.py +326 -0
- tomwer/gui/stitching/StitchingOptionsWidget.py +438 -0
- tomwer/gui/stitching/StitchingWindow.py +586 -0
- tomwer/gui/stitching/__init__.py +2 -0
- tomwer/gui/stitching/alignment.py +90 -0
- tomwer/gui/stitching/axisorderedlist.py +44 -34
- tomwer/gui/stitching/config/axisparams.py +23 -11
- tomwer/gui/stitching/config/output.py +6 -5
- tomwer/gui/stitching/config/positionoveraxis.py +313 -51
- tomwer/gui/stitching/config/stitchingstrategies.py +22 -16
- tomwer/gui/stitching/config/tests/test_axisparams.py +25 -0
- tomwer/gui/stitching/config/tomoobjdetails.py +3 -5
- tomwer/gui/stitching/normalization.py +1 -0
- tomwer/gui/stitching/preview.py +59 -0
- tomwer/gui/stitching/singleaxis.py +57 -0
- tomwer/gui/stitching/stitchandbackground.py +3 -2
- tomwer/gui/stitching/stitching_preview.py +44 -36
- tomwer/gui/stitching/stitching_raw.py +5 -3
- tomwer/gui/stitching/tests/test_ZStitchingWindow.py +88 -0
- tomwer/gui/stitching/tests/test_axis_ordered_list.py +21 -0
- tomwer/gui/stitching/tests/test_normalization.py +27 -0
- tomwer/gui/stitching/tests/test_preview.py +68 -0
- tomwer/gui/stitching/tests/test_stitching_raw.py +110 -0
- tomwer/gui/stitching/tests/utils.py +92 -0
- tomwer/gui/stitching/utils.py +14 -0
- tomwer/gui/stitching/z_stitching/fineestimation.py +4 -32
- tomwer/gui/stitching/z_stitching/tests/test_fine_estimation.py +35 -0
- tomwer/gui/stitching/z_stitching/tests/test_raw_estimation.py +215 -0
- tomwer/gui/stitching/z_stitching/tests/test_stitching_window.py +51 -0
- tomwer/gui/tests/__init__.py +0 -0
- tomwer/gui/tests/test_axis_gui.py +27 -0
- tomwer/gui/{test → tests}/test_qfolder_dialog.py +1 -1
- tomwer/gui/utils/RangeWidget.py +44 -0
- tomwer/gui/utils/buttons.py +4 -3
- tomwer/gui/utils/completer.py +2 -33
- tomwer/gui/utils/flow.py +11 -40
- tomwer/gui/utils/gpu.py +60 -0
- tomwer/gui/utils/illustrations.py +1 -26
- tomwer/gui/utils/inputwidget.py +35 -73
- tomwer/gui/utils/lineselector/lineselector.py +9 -46
- tomwer/gui/utils/loadingmode.py +81 -0
- tomwer/gui/utils/qt_utils.py +9 -0
- tomwer/gui/utils/sandboxes.py +1 -26
- tomwer/gui/utils/scandescription.py +2 -31
- tomwer/gui/utils/scrollarea.py +6 -55
- tomwer/gui/utils/slider.py +4 -28
- tomwer/gui/utils/splashscreen.py +0 -28
- tomwer/gui/utils/step.py +14 -13
- tomwer/gui/utils/tests/test_completer.py +41 -0
- tomwer/gui/utils/tests/test_line_selector.py +21 -0
- tomwer/gui/utils/tests/test_splashscreen.py +8 -0
- tomwer/gui/utils/tests/test_vignettes.py +68 -0
- tomwer/gui/utils/unitsystem.py +15 -69
- tomwer/gui/utils/utils.py +4 -5
- tomwer/gui/utils/vignettes.py +10 -41
- tomwer/gui/utils/waiterthread.py +0 -26
- tomwer/gui/visualization/__init__.py +2 -0
- tomwer/gui/visualization/dataviewer.py +68 -421
- tomwer/gui/visualization/diffviewer/diffviewer.py +2 -30
- tomwer/gui/visualization/diffviewer/shiftwidget.py +4 -29
- tomwer/gui/visualization/fullscreenplot.py +5 -5
- tomwer/gui/visualization/imagestack.py +403 -0
- tomwer/gui/visualization/nxtomometadata.py +0 -4
- tomwer/gui/visualization/reconstructionparameters.py +14 -32
- tomwer/gui/visualization/scanoverview.py +33 -66
- tomwer/gui/visualization/sinogramviewer.py +2 -28
- tomwer/gui/visualization/test/__init__.py +0 -28
- tomwer/gui/visualization/test/test_dataviewer.py +1 -28
- tomwer/gui/visualization/test/test_diffviewer.py +1 -28
- tomwer/gui/visualization/test/test_nx_tomo_metadata_viewer.py +0 -5
- tomwer/gui/visualization/test/test_reconstruction_parameters.py +1 -27
- tomwer/gui/visualization/test/test_sinogramviewer.py +1 -28
- tomwer/gui/visualization/test/test_stacks.py +184 -115
- tomwer/gui/visualization/test/test_volumeviewer.py +3 -2
- tomwer/gui/visualization/tomoobjoverview.py +2 -2
- tomwer/gui/visualization/volumeoverview.py +3 -2
- tomwer/gui/visualization/volumeviewer.py +47 -43
- tomwer/io/__init__.py +2 -0
- tomwer/io/utils/h5pyutils.py +1 -27
- tomwer/io/utils/test/test_raw_and_processed_data.py +10 -0
- tomwer/io/utils/test/test_utils.py +67 -0
- tomwer/io/utils/utils.py +2 -31
- tomwer/resources/__init__.py +13 -33
- tomwer/resources/gui/icons/edit_downstream.svg +114 -0
- tomwer/resources/gui/icons/edit_upstream.svg +112 -0
- tomwer/resources/gui/icons/free_edition.svg +23 -0
- tomwer/resources/gui/icons/icat_gallery_opts.png +0 -0
- tomwer/resources/gui/icons/icat_gallery_opts.svg +80 -0
- tomwer/resources/gui/icons/search.png +0 -0
- tomwer/resources/gui/icons/search.svg +23 -0
- tomwer/resources/gui/icons/warning.png +0 -0
- tomwer/synctools/__init__.py +2 -0
- tomwer/synctools/axis.py +1 -27
- tomwer/synctools/darkref.py +1 -26
- tomwer/synctools/datalistener.py +1 -27
- tomwer/synctools/datatransfert.py +2 -27
- tomwer/synctools/imageloaderthread.py +1 -28
- tomwer/synctools/rsyncmanager.py +1 -25
- tomwer/synctools/saaxis.py +1 -26
- tomwer/synctools/sadeltabeta.py +1 -26
- tomwer/synctools/stacks/control/datalistener.py +1 -26
- tomwer/synctools/stacks/processingstack.py +4 -33
- tomwer/synctools/stacks/reconstruction/axis.py +2 -31
- tomwer/synctools/stacks/reconstruction/castvolume.py +12 -43
- tomwer/synctools/stacks/reconstruction/dkrefcopy.py +3 -26
- tomwer/synctools/stacks/reconstruction/nabu.py +1 -26
- tomwer/synctools/stacks/reconstruction/normalization.py +1 -26
- tomwer/synctools/stacks/reconstruction/saaxis.py +1 -26
- tomwer/synctools/stacks/reconstruction/sadeltabeta.py +1 -26
- tomwer/synctools/tests/__init__.py +0 -0
- tomwer/synctools/{test → tests}/test_darkRefs.py +16 -40
- tomwer/synctools/{test → tests}/test_foldertransfer.py +2 -33
- tomwer/synctools/utils/scanstages.py +2 -31
- tomwer/tests/__init__.py +1 -0
- tomwer/tests/app/test_stitching.py +95 -0
- tomwer/tests/datasets.py +1 -5
- tomwer/tests/orangecontrib/tomwer/widgets/cluster/tests/test_future_supervisorow.py +48 -0
- tomwer/tests/orangecontrib/tomwer/widgets/cluster/tests/test_slurm_clusterow.py +40 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_advancement.py +8 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_data_validator.py +55 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datadiscovery.py +129 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datalistener.py +111 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_dataselector.py +69 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datawatcher.py +411 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_emailow.py +29 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_notifier.py +24 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_nxtomo_concatenate_ow.py +64 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_nxtomomill.py +133 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_reduce_dark_flat_selector.py +40 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_singletomoobj.py +40 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_timerow.py +25 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_tomoobj_series.py +96 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_volume_selector.py +69 -0
- orangecontrib/tomwer/widgets/edit/test/test_image_key_editor.py → tomwer/tests/orangecontrib/tomwer/widgets/debugtools/tests/test_dataset_generator.py +17 -16
- tomwer/tests/orangecontrib/tomwer/widgets/debugtools/tests/test_object_inspector.py +36 -0
- {orangecontrib/tomwer/widgets/edit/test → tomwer/tests/orangecontrib/tomwer/widgets/edit/tests}/test_dark_flat_patch.py +1 -27
- tomwer/tests/orangecontrib/tomwer/widgets/edit/tests/test_image_key_editor.py +30 -0
- tomwer/tests/orangecontrib/tomwer/widgets/edit/tests/test_nxtomo_editor.py +138 -0
- tomwer/tests/orangecontrib/tomwer/widgets/other/tests/test_pythonscript.py +31 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_axis.py +215 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_cast_volumeow.py +58 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_dark_refs_widget.py +136 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_delta_beta_selector.py +15 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_i_norm.py +200 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_helical_prepare_weights_double.py +20 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_volume.py +74 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_widget.py +107 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_sa_delta_beta.py +194 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_saaxis.py +194 -0
- tomwer/tests/orangecontrib/tomwer/widgets/stitching/tests/test_zstitching.py +313 -0
- tomwer/tests/orangecontrib/tomwer/widgets/tests/test_conditions.py +85 -0
- tomwer/tests/orangecontrib/tomwer/widgets/tests/test_darkref.py +225 -0
- tomwer/tests/orangecontrib/tomwer/widgets/tests/test_foldertransfert.py +105 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_dataviewerow.py +57 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_diffviewerow.py +39 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_nxtomo_metadata_viewer.py +29 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_radio_stackow.py +31 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_sample_movedow.py +46 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_sinogram_viewerow.py +31 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_slice_stackow.py +31 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_volume_viewerow.py +32 -0
- tomwer/tests/test_ewoks/test_conversion.py +104 -0
- tomwer/tests/test_ewoks/test_single_node_execution.py +87 -0
- tomwer/tests/test_ewoks/test_workflows.py +138 -0
- tomwer/utils.py +11 -39
- tomwer/version.py +3 -3
- {tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/LICENSE +3 -3
- tomwer-1.4.0rc0.dist-info/METADATA +337 -0
- tomwer-1.4.0rc0.dist-info/RECORD +909 -0
- {tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/WHEEL +1 -1
- {tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/entry_points.txt +1 -0
- orangecontrib/tomwer/widgets/control/DataListOW.py +0 -129
- orangecontrib/tomwer/widgets/control/TomoObjSerieOW.py +0 -86
- orangecontrib/tomwer/widgets/control/VolumeSymLinkOW.py +0 -182
- orangecontrib/tomwer/widgets/edit/test/test_nxtomo_editor.py +0 -141
- orangecontrib/tomwer/widgets/icat/PublishProcessedDataOW.py +0 -115
- orangecontrib/tomwer/widgets/icat/RawDataScreenshotCreatorOW.py +0 -98
- orangecontrib/tomwer/widgets/icat/SaveToGalleryAndPublishOW.py +0 -129
- orangecontrib/tomwer/widgets/icat/icons/add_gallery.png +0 -0
- orangecontrib/tomwer/widgets/icat/icons/add_gallery.svg +0 -82
- orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.png +0 -0
- orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.svg +0 -143
- orangecontrib/tomwer/widgets/visualization/LivesliceOW.py +0 -87
- orangecontrib/tomwer/widgets/visualization/icons/liveslice.png +0 -0
- orangecontrib/tomwer/widgets/visualization/icons/liveslice.svg +0 -110
- tomwer/core/log/logger.py +0 -130
- tomwer/core/process/control/test/test_volume_link.py +0 -74
- tomwer/core/process/control/tomoobjserie.py +0 -12
- tomwer/core/process/control/volumesymlink.py +0 -200
- tomwer/core/process/icat/createscreenshots.py +0 -100
- tomwer/core/process/icat/gallery.py +0 -377
- tomwer/core/process/icat/icatbase.py +0 -36
- tomwer/core/process/icat/publish.py +0 -228
- tomwer/core/process/icat/screenshots.py +0 -27
- tomwer/core/process/reconstruction/test/test_darkref.py +0 -60
- tomwer/core/process/reconstruction/test/test_sadeltabeta.py +0 -74
- tomwer/core/process/visualization/liveslice.py +0 -6
- tomwer/core/progress.py +0 -100
- tomwer/core/scan/test/test_edf.py +0 -53
- tomwer/core/scan/test/test_future_scan.py +0 -61
- tomwer/core/scan/test/test_h5.py +0 -96
- tomwer/core/test/test_scanutils.py +0 -53
- tomwer/gui/control/emailnotifier.py +0 -174
- tomwer/gui/control/serie/seriewaiter.py +0 -28
- tomwer/gui/control/test/__init__.py +0 -28
- tomwer/gui/control/test/test_datalist.py +0 -96
- tomwer/gui/control/test/test_datavalidator.py +0 -54
- tomwer/gui/control/test/test_email.py +0 -35
- tomwer/gui/control/test/test_process_manager.py +0 -65
- tomwer/gui/control/test/test_scanselector.py +0 -67
- tomwer/gui/edit/test/__init__.py +0 -28
- tomwer/gui/icat/gallery.py +0 -214
- tomwer/gui/icat/publish.py +0 -187
- tomwer/gui/reconstruction/axis/axis.py +0 -733
- tomwer/gui/reconstruction/axis/radioaxis.py +0 -2467
- tomwer/gui/stitching/stitching.py +0 -1388
- tomwer/gui/test/__init__.py +0 -28
- tomwer/gui/test/test_axis_gui.py +0 -34
- tomwer/synctools/stacks/edit/darkflatpatch.py +0 -169
- tomwer/synctools/stacks/edit/imagekeyeditor.py +0 -135
- tomwer/third_part/WaitingOverlay.py +0 -110
- tomwer-1.3.27-py3.11-nspkg.pth +0 -1
- tomwer-1.3.27.dist-info/METADATA +0 -292
- tomwer-1.3.27.dist-info/RECORD +0 -785
- tomwer-1.3.27.dist-info/namespace_packages.txt +0 -1
- /orangecontrib/tomwer/{widgets/edit/test → tests}/__init__.py +0 -0
- {tomwer/core/process/control/test → orangecontrib/tomwer/tutorials/id16b}/__init__.py +0 -0
- {tomwer/core/process/icat → orangecontrib/tomwer/widgets/cluster/tests}/__init__.py +0 -0
- /orangecontrib/tomwer/widgets/control/icons/{tomoobjserie.png → tomoobjseries.png} +0 -0
- {tomwer/core/process/reconstruction/test → orangecontrib/tomwer/widgets/control/tests}/__init__.py +0 -0
- /orangecontrib/tomwer/widgets/{icat → dataportal}/icons/publish_processed_data.png +0 -0
- /orangecontrib/tomwer/widgets/{icat → dataportal}/icons/publish_processed_data.svg +0 -0
- {tomwer/core/process/test → orangecontrib/tomwer/widgets/debugtools/tests}/__init__.py +0 -0
- {tomwer/core/scan/test → orangecontrib/tomwer/widgets/edit/tests}/__init__.py +0 -0
- {tomwer/core/test → orangecontrib/tomwer/widgets/other/tests}/__init__.py +0 -0
- {tomwer/gui/cluster/test → orangecontrib/tomwer/widgets/reconstruction/tests}/__init__.py +0 -0
- {tomwer/gui/control/serie → orangecontrib/tomwer/widgets/stitching/tests}/__init__.py +0 -0
- {tomwer/gui/icat → orangecontrib/tomwer/widgets/tests}/__init__.py +0 -0
- {tomwer/gui/reconstruction/test → orangecontrib/tomwer/widgets/visualization/tests}/__init__.py +0 -0
- /tomwer/{synctools/stacks/edit → app/stitching}/__init__.py +0 -0
- /tomwer/{synctools/test → core/process/control/tests}/__init__.py +0 -0
- /tomwer/core/process/control/{test → tests}/test_email.py +0 -0
- /tomwer/core/process/control/{test → tests}/test_h52nx_process.py +0 -0
- /tomwer/{third_part → core/process/drac}/__init__.py +0 -0
- /tomwer/core/process/reconstruction/{test → tests}/test_axis_params.py +0 -0
- /tomwer/core/process/reconstruction/{test → tests}/test_darkref_copy.py +0 -0
- /tomwer/core/process/reconstruction/{test → tests}/test_paramsbase.py +0 -0
- /tomwer/core/process/reconstruction/{test → tests}/test_utils.py +0 -0
- /tomwer/core/scan/{test → tests}/test_scan.py +0 -0
- /tomwer/gui/control/{serie → series}/nxtomoconcatenate.py +0 -0
- /tomwer/gui/control/{test → tests}/test_datadiscovery.py +0 -0
- /tomwer/gui/control/{test → tests}/test_reducedarkflat_selector.py +0 -0
- /tomwer/gui/control/{test → tests}/test_single_tomo_obj.py +0 -0
- {orangecontrib/tomwer/widgets/edit/test → tomwer/tests/orangecontrib/tomwer/widgets/edit/tests}/test_image_key_upgrader.py +0 -0
- {tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/top_level.txt +0 -0
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assert len(scan.reduced_darks) == 1
|
60
|
-
assert len(scan.reduced_flats) == 1
|
@@ -1,74 +0,0 @@
|
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# coding: utf-8
|
2
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-
# /*##########################################################################
|
3
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#
|
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# Copyright (c) 2016-2017 European Synchrotron Radiation Facility
|
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#
|
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# Permission is hereby granted, free of charge, to any person obtaining a copy
|
7
|
-
# of this software and associated documentation files (the "Software"), to deal
|
8
|
-
# in the Software without restriction, including without limitation the rights
|
9
|
-
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
10
|
-
# copies of the Software, and to permit persons to whom the Software is
|
11
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-
# furnished to do so, subject to the following conditions:
|
12
|
-
#
|
13
|
-
# The above copyright notice and this permission notice shall be included in
|
14
|
-
# all copies or substantial portions of the Software.
|
15
|
-
#
|
16
|
-
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
17
|
-
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
18
|
-
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
19
|
-
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
20
|
-
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
21
|
-
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
|
22
|
-
# THE SOFTWARE.
|
23
|
-
#
|
24
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-
# ###########################################################################*/
|
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|
-
|
26
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__authors__ = ["H. Payno"]
|
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__license__ = "MIT"
|
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__date__ = "27/02/2021"
|
29
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-
|
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-
|
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import os
|
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import shutil
|
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|
-
import tempfile
|
34
|
-
import unittest
|
35
|
-
|
36
|
-
from tomwer.core.process.reconstruction.sadeltabeta.sadeltabeta import (
|
37
|
-
SADeltaBetaParams,
|
38
|
-
SADeltaBetaTask,
|
39
|
-
)
|
40
|
-
from tomwer.core.utils.scanutils import MockNXtomo
|
41
|
-
|
42
|
-
|
43
|
-
class TestSADeltaBetaProcess(unittest.TestCase):
|
44
|
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"""Test the SAAxisProcess class"""
|
45
|
-
|
46
|
-
def setUp(self) -> None:
|
47
|
-
super().setUp()
|
48
|
-
self.tempdir = tempfile.mkdtemp()
|
49
|
-
dim = 10
|
50
|
-
mock = MockNXtomo(
|
51
|
-
scan_path=self.tempdir, n_proj=10, n_ini_proj=10, scan_range=180, dim=dim
|
52
|
-
)
|
53
|
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self.scan = mock.scan
|
54
|
-
|
55
|
-
def tearDown(self) -> None:
|
56
|
-
shutil.rmtree(self.tempdir)
|
57
|
-
super().tearDown()
|
58
|
-
|
59
|
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def test(self):
|
60
|
-
process = SADeltaBetaTask(
|
61
|
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inputs={
|
62
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"data": self.scan,
|
63
|
-
"sa_delta_beta_params": SADeltaBetaParams().to_dict(),
|
64
|
-
"serialize_output_data": False,
|
65
|
-
}
|
66
|
-
)
|
67
|
-
|
68
|
-
default_sadelta_beta_params = SADeltaBetaParams()
|
69
|
-
default_sadelta_beta_params.output_dir = os.path.join(
|
70
|
-
self.tempdir, "output_dir"
|
71
|
-
)
|
72
|
-
default_sadelta_beta_params.dry_run = True
|
73
|
-
|
74
|
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process.run()
|
tomwer/core/progress.py
DELETED
@@ -1,100 +0,0 @@
|
|
1
|
-
# coding: utf-8
|
2
|
-
# /*##########################################################################
|
3
|
-
#
|
4
|
-
# Copyright (c) 2016-2017 European Synchrotron Radiation Facility
|
5
|
-
#
|
6
|
-
# Permission is hereby granted, free of charge, to any person obtaining a copy
|
7
|
-
# of this software and associated documentation files (the "Software"), to deal
|
8
|
-
# in the Software without restriction, including without limitation the rights
|
9
|
-
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
10
|
-
# copies of the Software, and to permit persons to whom the Software is
|
11
|
-
# furnished to do so, subject to the following conditions:
|
12
|
-
#
|
13
|
-
# The above copyright notice and this permission notice shall be included in
|
14
|
-
# all copies or substantial portions of the Software.
|
15
|
-
#
|
16
|
-
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
17
|
-
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
18
|
-
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
19
|
-
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
20
|
-
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
21
|
-
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
|
22
|
-
# THE SOFTWARE.
|
23
|
-
#
|
24
|
-
# ###########################################################################*/
|
25
|
-
"""module for giving information on process progress"""
|
26
|
-
|
27
|
-
__authors__ = ["H. Payno"]
|
28
|
-
__license__ = "MIT"
|
29
|
-
__date__ = "07/08/2019"
|
30
|
-
|
31
|
-
|
32
|
-
import logging
|
33
|
-
import sys
|
34
|
-
from enum import Enum
|
35
|
-
|
36
|
-
_logger = logging.getLogger(__name__)
|
37
|
-
|
38
|
-
|
39
|
-
class _Advancement(Enum):
|
40
|
-
step_1 = "\\"
|
41
|
-
step_2 = "-"
|
42
|
-
step_3 = "/"
|
43
|
-
step_4 = "|"
|
44
|
-
|
45
|
-
@staticmethod
|
46
|
-
def getNextStep(step):
|
47
|
-
if step is _Advancement.step_1:
|
48
|
-
return _Advancement.step_2
|
49
|
-
elif step is _Advancement.step_2:
|
50
|
-
return _Advancement.step_3
|
51
|
-
elif step is _Advancement.step_3:
|
52
|
-
return _Advancement.step_4
|
53
|
-
else:
|
54
|
-
return _Advancement.step_1
|
55
|
-
|
56
|
-
@staticmethod
|
57
|
-
def getStep(value):
|
58
|
-
if value % 4 == 0:
|
59
|
-
return _Advancement.step_4
|
60
|
-
elif value % 3 == 0:
|
61
|
-
return _Advancement.step_3
|
62
|
-
elif value % 2 == 0:
|
63
|
-
return _Advancement.step_2
|
64
|
-
else:
|
65
|
-
return _Advancement.step_1
|
66
|
-
|
67
|
-
|
68
|
-
class Progress(object):
|
69
|
-
"""Simple interface for defining advancement on a 100 percentage base"""
|
70
|
-
|
71
|
-
def __init__(self, name):
|
72
|
-
self._name = name
|
73
|
-
self.reset()
|
74
|
-
|
75
|
-
def reset(self, max_=None):
|
76
|
-
self._nProcessed = 0
|
77
|
-
self._maxProcessed = max_
|
78
|
-
|
79
|
-
def startProcess(self):
|
80
|
-
self.setAdvancement(0)
|
81
|
-
|
82
|
-
def setAdvancement(self, value):
|
83
|
-
length = 20 # modify this to change the length
|
84
|
-
block = int(round(length * value / 100))
|
85
|
-
blocks_str = "#" * block + "-" * (length - block)
|
86
|
-
msg = f"\r{self._name}: [{blocks_str}] {round(value, 2)}%"
|
87
|
-
if value >= 100:
|
88
|
-
msg += " DONE\r\n"
|
89
|
-
sys.stdout.write(msg)
|
90
|
-
sys.stdout.flush()
|
91
|
-
|
92
|
-
def endProcess(self):
|
93
|
-
self.setAdvancement(100)
|
94
|
-
|
95
|
-
def setMaxAdvancement(self, n):
|
96
|
-
self._maxProcessed = n
|
97
|
-
|
98
|
-
def increaseAdvancement(self, i=1):
|
99
|
-
self._nProcessed += i
|
100
|
-
self.setAdvancement((self._nProcessed / self._maxProcessed) * 100)
|
@@ -1,53 +0,0 @@
|
|
1
|
-
# coding: utf-8
|
2
|
-
# /*##########################################################################
|
3
|
-
#
|
4
|
-
# Copyright (c) 2016-2017 European Synchrotron Radiation Facility
|
5
|
-
#
|
6
|
-
# Permission is hereby granted, free of charge, to any person obtaining a copy
|
7
|
-
# of this software and associated documentation files (the "Software"), to deal
|
8
|
-
# in the Software without restriction, including without limitation the rights
|
9
|
-
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
10
|
-
# copies of the Software, and to permit persons to whom the Software is
|
11
|
-
# furnished to do so, subject to the following conditions:
|
12
|
-
#
|
13
|
-
# The above copyright notice and this permission notice shall be included in
|
14
|
-
# all copies or substantial portions of the Software.
|
15
|
-
#
|
16
|
-
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
17
|
-
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
18
|
-
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
19
|
-
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
20
|
-
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
21
|
-
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
|
22
|
-
# THE SOFTWARE.
|
23
|
-
#
|
24
|
-
# ###########################################################################*/
|
25
|
-
"""Unit test for the scan defined at the hdf5 format"""
|
26
|
-
|
27
|
-
__authors__ = ["H. Payno"]
|
28
|
-
__license__ = "MIT"
|
29
|
-
__date__ = "23/11/2021"
|
30
|
-
|
31
|
-
|
32
|
-
import os
|
33
|
-
|
34
|
-
from tomwer.core.scan.edfscan import EDFTomoScan
|
35
|
-
from tomwer.core.utils.scanutils import MockEDF
|
36
|
-
|
37
|
-
|
38
|
-
def test_scan_dir(tmpdir):
|
39
|
-
full_path = os.path.join(tmpdir, "my", "aquisition", "folder")
|
40
|
-
MockEDF.fastMockAcquisition(full_path)
|
41
|
-
scan = EDFTomoScan(full_path)
|
42
|
-
assert scan.scan_dir_name() == "folder"
|
43
|
-
assert scan.scan_basename() == full_path
|
44
|
-
|
45
|
-
|
46
|
-
def test_working_directory():
|
47
|
-
"""test behavior of the working directory function"""
|
48
|
-
scan = EDFTomoScan(scan=None)
|
49
|
-
assert scan.working_directory is None
|
50
|
-
scan = EDFTomoScan(scan="my_folder")
|
51
|
-
assert scan.working_directory == os.path.abspath("my_folder")
|
52
|
-
scan = EDFTomoScan(scan="/full/path/to/my/folder")
|
53
|
-
assert scan.working_directory == os.path.abspath("/full/path/to/my/folder")
|
@@ -1,61 +0,0 @@
|
|
1
|
-
# coding: utf-8
|
2
|
-
# /*##########################################################################
|
3
|
-
#
|
4
|
-
# Copyright (c) 2016-2017 European Synchrotron Radiation Facility
|
5
|
-
#
|
6
|
-
# Permission is hereby granted, free of charge, to any person obtaining a copy
|
7
|
-
# of this software and associated documentation files (the "Software"), to deal
|
8
|
-
# in the Software without restriction, including without limitation the rights
|
9
|
-
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
10
|
-
# copies of the Software, and to permit persons to whom the Software is
|
11
|
-
# furnished to do so, subject to the following conditions:
|
12
|
-
#
|
13
|
-
# The above copyright notice and this permission notice shall be included in
|
14
|
-
# all copies or substantial portions of the Software.
|
15
|
-
#
|
16
|
-
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
17
|
-
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
18
|
-
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
19
|
-
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
20
|
-
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
21
|
-
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
|
22
|
-
# THE SOFTWARE.
|
23
|
-
#
|
24
|
-
# ###########################################################################*/
|
25
|
-
"""Unit test for the scan defined at the hdf5 format"""
|
26
|
-
|
27
|
-
__authors__ = ["H. Payno"]
|
28
|
-
__license__ = "MIT"
|
29
|
-
__date__ = "04/11/2021"
|
30
|
-
|
31
|
-
|
32
|
-
import asyncio
|
33
|
-
import os
|
34
|
-
|
35
|
-
from tomwer.core.futureobject import FutureTomwerObject
|
36
|
-
from tomwer.core.utils.scanutils import MockNXtomo
|
37
|
-
|
38
|
-
|
39
|
-
def test_simple_future_tomo_obj(tmpdir):
|
40
|
-
"""Simple test of the FutureTomwerScan API"""
|
41
|
-
scan = MockNXtomo(
|
42
|
-
scan_path=os.path.join(tmpdir, "scan_test"),
|
43
|
-
n_proj=10,
|
44
|
-
n_ini_proj=10,
|
45
|
-
create_ini_dark=False,
|
46
|
-
create_ini_flat=False,
|
47
|
-
dim=10,
|
48
|
-
).scan
|
49
|
-
future = asyncio.Future()
|
50
|
-
future.set_result(None)
|
51
|
-
|
52
|
-
future_tomo_obj = FutureTomwerObject(
|
53
|
-
tomo_obj=scan,
|
54
|
-
futures=[
|
55
|
-
future,
|
56
|
-
],
|
57
|
-
)
|
58
|
-
|
59
|
-
future_tomo_obj.results()
|
60
|
-
assert future_tomo_obj.exceptions() is None
|
61
|
-
assert future_tomo_obj.cancelled() is False
|
tomwer/core/scan/test/test_h5.py
DELETED
@@ -1,96 +0,0 @@
|
|
1
|
-
# coding: utf-8
|
2
|
-
# /*##########################################################################
|
3
|
-
#
|
4
|
-
# Copyright (c) 2016-2017 European Synchrotron Radiation Facility
|
5
|
-
#
|
6
|
-
# Permission is hereby granted, free of charge, to any person obtaining a copy
|
7
|
-
# of this software and associated documentation files (the "Software"), to deal
|
8
|
-
# in the Software without restriction, including without limitation the rights
|
9
|
-
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
10
|
-
# copies of the Software, and to permit persons to whom the Software is
|
11
|
-
# furnished to do so, subject to the following conditions:
|
12
|
-
#
|
13
|
-
# The above copyright notice and this permission notice shall be included in
|
14
|
-
# all copies or substantial portions of the Software.
|
15
|
-
#
|
16
|
-
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
17
|
-
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
18
|
-
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
19
|
-
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
20
|
-
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
21
|
-
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
|
22
|
-
# THE SOFTWARE.
|
23
|
-
#
|
24
|
-
# ###########################################################################*/
|
25
|
-
"""Unit test for the scan defined at the hdf5 format"""
|
26
|
-
|
27
|
-
__authors__ = ["H. Payno"]
|
28
|
-
__license__ = "MIT"
|
29
|
-
__date__ = "16/09/2019"
|
30
|
-
|
31
|
-
import os
|
32
|
-
import shutil
|
33
|
-
import tempfile
|
34
|
-
import unittest
|
35
|
-
|
36
|
-
from tomwer.core.scan.nxtomoscan import NXtomoScan
|
37
|
-
from tomwer.core.utils.scanutils import MockNXtomo
|
38
|
-
from tomwer.tests.datasets import TomwerCIDatasets
|
39
|
-
|
40
|
-
|
41
|
-
class TestHDF5Scan(unittest.TestCase):
|
42
|
-
"""Basic test for the hdf5 scan"""
|
43
|
-
|
44
|
-
def setUp(self) -> None:
|
45
|
-
super(TestHDF5Scan, self).setUp()
|
46
|
-
self._tmp_dir = tempfile.mkdtemp()
|
47
|
-
self.dataset_file = os.path.join(self._tmp_dir, "frm_edftomomill_twoentries.nx")
|
48
|
-
shutil.copyfile(
|
49
|
-
TomwerCIDatasets.get_dataset(
|
50
|
-
"h5_datasets/frm_edftomomill_twoentries.nx",
|
51
|
-
),
|
52
|
-
self.dataset_file,
|
53
|
-
)
|
54
|
-
assert os.path.isfile(self.dataset_file)
|
55
|
-
self.scan = NXtomoScan(scan=self.dataset_file, entry="entry0000")
|
56
|
-
|
57
|
-
def test_scan_dir(self):
|
58
|
-
assert self.scan.scan_dir_name() == self._tmp_dir.split(os.sep)[-1]
|
59
|
-
|
60
|
-
def testFFInterval(self):
|
61
|
-
"""test the call to ff_interval"""
|
62
|
-
scan_path = os.path.join(self._tmp_dir, "my_scan_1")
|
63
|
-
scan_1 = MockNXtomo(
|
64
|
-
scan_path=scan_path,
|
65
|
-
n_ini_proj=20,
|
66
|
-
n_proj=20,
|
67
|
-
n_alignement_proj=2,
|
68
|
-
create_final_flat=True,
|
69
|
-
create_ini_dark=True,
|
70
|
-
create_ini_flat=True,
|
71
|
-
n_refs=5,
|
72
|
-
).scan
|
73
|
-
self.assertEqual(scan_1.ff_interval, 20)
|
74
|
-
|
75
|
-
scan_path2 = os.path.join(self._tmp_dir, "my_scan_2")
|
76
|
-
scan_2 = MockNXtomo(
|
77
|
-
scan_path=scan_path2,
|
78
|
-
n_ini_proj=10,
|
79
|
-
n_proj=10,
|
80
|
-
n_alignement_proj=2,
|
81
|
-
create_final_flat=False,
|
82
|
-
create_ini_dark=True,
|
83
|
-
create_ini_flat=True,
|
84
|
-
n_refs=1,
|
85
|
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).scan
|
86
|
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self.assertEqual(scan_2.ff_interval, 0)
|
87
|
-
|
88
|
-
|
89
|
-
def test_working_directory():
|
90
|
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"""test behavior of the working directory function"""
|
91
|
-
scan = NXtomoScan(scan=None, entry="my_entry")
|
92
|
-
assert scan.working_directory is None
|
93
|
-
scan = NXtomoScan(scan="/full/path/my_file.sh", entry="my_entry")
|
94
|
-
assert scan.working_directory == os.path.abspath("/full/path")
|
95
|
-
scan = NXtomoScan(scan="my_file.sh", entry="my_entry")
|
96
|
-
assert scan.working_directory == os.path.abspath(".")
|
@@ -1,53 +0,0 @@
|
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1
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-
# coding: utf-8
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2
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-
# /*##########################################################################
|
3
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-
#
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4
|
-
# Copyright (c) 2017 European Synchrotron Radiation Facility
|
5
|
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#
|
6
|
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# Permission is hereby granted, free of charge, to any person obtaining a copy
|
7
|
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# of this software and associated documentation files (the "Software"), to deal
|
8
|
-
# in the Software without restriction, including without limitation the rights
|
9
|
-
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
10
|
-
# copies of the Software, and to permit persons to whom the Software is
|
11
|
-
# furnished to do so, subject to the following conditions:
|
12
|
-
#
|
13
|
-
# The above copyright notice and this permission notice shall be included in
|
14
|
-
# all copies or substantial portions of the Software.
|
15
|
-
#
|
16
|
-
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
17
|
-
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
18
|
-
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
19
|
-
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
20
|
-
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
21
|
-
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
|
22
|
-
# THE SOFTWARE.
|
23
|
-
#
|
24
|
-
# ###########################################################################*/
|
25
|
-
|
26
|
-
__authors__ = ["H. Payno"]
|
27
|
-
__license__ = "MIT"
|
28
|
-
__date__ = "30/09/2019"
|
29
|
-
|
30
|
-
import os
|
31
|
-
import tempfile
|
32
|
-
import unittest
|
33
|
-
|
34
|
-
from nxtomo.application.nxtomo import NXtomo
|
35
|
-
from tomwer.core.scan.nxtomoscan import NXtomoScan
|
36
|
-
from tomwer.core.utils.scanutils import MockNXtomo
|
37
|
-
|
38
|
-
|
39
|
-
class TestMockNXtomo(unittest.TestCase):
|
40
|
-
"""Test the MockNXtomo file"""
|
41
|
-
|
42
|
-
def test_creation(self):
|
43
|
-
folder = tempfile.mkdtemp()
|
44
|
-
mock = MockNXtomo(scan_path=folder, n_proj=10, n_ini_proj=10)
|
45
|
-
self.assertEqual(
|
46
|
-
mock.scan_master_file,
|
47
|
-
os.path.join(folder, os.path.basename(folder) + ".h5"),
|
48
|
-
)
|
49
|
-
tomoScan = NXtomoScan(mock.scan_path, entry=mock.scan_entry)
|
50
|
-
self.assertEqual(len(NXtomo.get_valid_entries(mock.scan_master_file)), 1)
|
51
|
-
tomoScan.update()
|
52
|
-
self.assertEqual(tomoScan.scan_range, 360)
|
53
|
-
self.assertEqual(len(tomoScan.projections), 10)
|
@@ -1,174 +0,0 @@
|
|
1
|
-
from typing import Optional
|
2
|
-
from silx.gui import qt
|
3
|
-
from tomwer.gui import icons as tomwericons
|
4
|
-
from tomwer.core.utils.dictutils import concatenate_dict
|
5
|
-
|
6
|
-
|
7
|
-
class EmailComposition(qt.QWidget):
|
8
|
-
"""
|
9
|
-
Widget used to compose an email
|
10
|
-
|
11
|
-
Please see https://confluence.esrf.fr/display/SCKB/Rules+about+email for email rules at esrf
|
12
|
-
"""
|
13
|
-
|
14
|
-
sigChanged = qt.Signal()
|
15
|
-
"""emit when the composition changed"""
|
16
|
-
|
17
|
-
def __init__(self, parent: Optional[qt.QWidget]) -> None:
|
18
|
-
super().__init__(parent)
|
19
|
-
self.setLayout(qt.QFormLayout())
|
20
|
-
# from
|
21
|
-
self._fromAddressesQLE = qt.QLineEdit(self)
|
22
|
-
singleEmailValidator = qt.QRegularExpressionValidator(
|
23
|
-
qt.QRegularExpression(
|
24
|
-
r"(^[a-zA-Z0-9_.+-]+@[a-zA-Z0-9-]+\.[a-zA-Z0-9-.]+$)"
|
25
|
-
),
|
26
|
-
self._fromAddressesQLE,
|
27
|
-
)
|
28
|
-
self._fromAddressesQLE.setValidator(singleEmailValidator)
|
29
|
-
self.layout().addRow("from", self._fromAddressesQLE)
|
30
|
-
# to
|
31
|
-
self._toAdressesQLE = qt.QLineEdit(self)
|
32
|
-
severalEmailValidator = qt.QRegularExpressionValidator(
|
33
|
-
qt.QRegularExpression(
|
34
|
-
r"(([a-zA-Z0-9_\-\.]+)@((\[[0-9]{1,3}\.[0-9]{1,3}\.[0-9]{1,3}\.)|(([a-zA-Z0-9\-]+\.)+))([a-zA-Z]{2,4}|[0-9]{1,3})(\]?)(\s*;\s*|\s*$))*"
|
35
|
-
),
|
36
|
-
self,
|
37
|
-
)
|
38
|
-
self._toAdressesQLE.setValidator(severalEmailValidator)
|
39
|
-
self.layout().addRow("to", self._toAdressesQLE)
|
40
|
-
# subject
|
41
|
-
self._subjectQLE = qt.QLineEdit("tomwer: {tomo_obj_short_id} received", self)
|
42
|
-
tooltip = """
|
43
|
-
this section can contain some predefine `keywords` and will be formatting before sending the email.\n
|
44
|
-
Reserve keywords are: \n
|
45
|
-
- {tomo_obj_short_id}: tomo_obj short identifier
|
46
|
-
- {tomo_obj_id}: tomo_obj id
|
47
|
-
- {ls_tomo_obj}: ls of the scan folder
|
48
|
-
- {timestamp}: current time
|
49
|
-
- {footnote}: some footnote defined by tomwer
|
50
|
-
- {dataset_processing_states}: list dataset state regarding met processes
|
51
|
-
"""
|
52
|
-
self._subjectQLE.setToolTip(tooltip)
|
53
|
-
self.layout().addRow("subject", self._subjectQLE)
|
54
|
-
# text
|
55
|
-
self._textQLE = qt.QPlainTextEdit(
|
56
|
-
"{tomo_obj_id} received at {timestamp} \n\nprocesses:\n{dataset_processing_states}\n\nfile listening:\n{ls_tomo_obj}\n\nInfo: {footnote}"
|
57
|
-
)
|
58
|
-
self._textQLE.setToolTip(tooltip)
|
59
|
-
self.layout().addRow(self._textQLE)
|
60
|
-
|
61
|
-
# connect signal / slot
|
62
|
-
self._fromAddressesQLE.editingFinished.connect(self.sigChanged)
|
63
|
-
self._toAdressesQLE.editingFinished.connect(self.sigChanged)
|
64
|
-
self._subjectQLE.editingFinished.connect(self.sigChanged)
|
65
|
-
self._textQLE.textChanged.connect(self.sigChanged)
|
66
|
-
|
67
|
-
def getToAddrs(self) -> tuple:
|
68
|
-
adresses = self._toAdressesQLE.text().replace(" ", "")
|
69
|
-
adresses.replace(",", ";")
|
70
|
-
return tuple(set(adresses.split(";")))
|
71
|
-
|
72
|
-
def getConfiguration(self) -> dict:
|
73
|
-
return {
|
74
|
-
"subject": self._subjectQLE.text(),
|
75
|
-
"from_addr": self._fromAddressesQLE.text(),
|
76
|
-
"to_addrs": self.getToAddrs(),
|
77
|
-
"text": self._textQLE.toPlainText(),
|
78
|
-
}
|
79
|
-
|
80
|
-
def setConfiguration(self, config: dict):
|
81
|
-
assert isinstance(config, dict)
|
82
|
-
subject = config.get("subject", None)
|
83
|
-
if subject is not None:
|
84
|
-
self._subjectQLE.setText(str(subject))
|
85
|
-
from_addr = config.get("from_addr", None)
|
86
|
-
if from_addr is not None:
|
87
|
-
self._fromAddressesQLE.setText(str(from_addr))
|
88
|
-
to_addrs = config.get("to_addrs", None)
|
89
|
-
if to_addrs is not None:
|
90
|
-
if not isinstance(to_addrs, str):
|
91
|
-
to_addrs = ";".join(to_addrs)
|
92
|
-
self._toAdressesQLE.setText(str(to_addrs))
|
93
|
-
text = config.get("text", None)
|
94
|
-
if text is not None:
|
95
|
-
self._textQLE.setPlainText(str(text))
|
96
|
-
|
97
|
-
|
98
|
-
class EmailSettings(qt.QWidget):
|
99
|
-
"""
|
100
|
-
Widget to set up mail server
|
101
|
-
"""
|
102
|
-
|
103
|
-
sigChanged = qt.Signal()
|
104
|
-
"""emit when the settings changed"""
|
105
|
-
|
106
|
-
def __init__(self, parent: Optional[qt.QWidget]) -> None:
|
107
|
-
super().__init__(parent)
|
108
|
-
self.setLayout(qt.QFormLayout(self))
|
109
|
-
# server
|
110
|
-
self._hostQLE = qt.QLineEdit("smtps.esrf.fr", self)
|
111
|
-
self.layout().addRow("host", self._hostQLE)
|
112
|
-
# port
|
113
|
-
self._portQLE = qt.QLineEdit("0", self)
|
114
|
-
self._portQLE.setValidator(qt.QIntValidator(self._portQLE))
|
115
|
-
self.layout().addRow("port", self._portQLE)
|
116
|
-
|
117
|
-
# connect signal / slot
|
118
|
-
self._hostQLE.editingFinished.connect(self.sigChanged)
|
119
|
-
self._portQLE.editingFinished.connect(self.sigChanged)
|
120
|
-
|
121
|
-
def getConfiguration(self) -> dict:
|
122
|
-
return {"host": self._hostQLE.text(), "port": int(self._portQLE.text())}
|
123
|
-
|
124
|
-
def setConfiguration(self, config: dict):
|
125
|
-
server = config.get("host", None)
|
126
|
-
if server is not None:
|
127
|
-
self._hostQLE.setText(str(server))
|
128
|
-
port = config.get("port", None)
|
129
|
-
if port is not None:
|
130
|
-
self._portQLE.setText(str(port))
|
131
|
-
|
132
|
-
|
133
|
-
class Emailwidget(qt.QTabWidget):
|
134
|
-
"""
|
135
|
-
Main widget to send email
|
136
|
-
"""
|
137
|
-
|
138
|
-
sigChanged = qt.Signal()
|
139
|
-
"""emit when the email settings or composition changed"""
|
140
|
-
|
141
|
-
def __init__(self, parent: Optional[qt.QWidget] = None) -> None:
|
142
|
-
super().__init__(parent)
|
143
|
-
|
144
|
-
self.setTabPosition(qt.QTabWidget.East)
|
145
|
-
|
146
|
-
self._compositionWidget = EmailComposition(self)
|
147
|
-
composeIcon = tomwericons.getQIcon("compose")
|
148
|
-
self.addTab(
|
149
|
-
self._compositionWidget,
|
150
|
-
composeIcon,
|
151
|
-
"",
|
152
|
-
)
|
153
|
-
|
154
|
-
self._serverSettingsWidget = EmailSettings(self)
|
155
|
-
settingsIcon = tomwericons.getQIcon("parameters")
|
156
|
-
self.addTab(
|
157
|
-
self._serverSettingsWidget,
|
158
|
-
settingsIcon,
|
159
|
-
"",
|
160
|
-
)
|
161
|
-
|
162
|
-
# connect signal / slot
|
163
|
-
self._compositionWidget.sigChanged.connect(self.sigChanged)
|
164
|
-
self._serverSettingsWidget.sigChanged.connect(self.sigChanged)
|
165
|
-
|
166
|
-
def getConfiguration(self) -> dict:
|
167
|
-
return concatenate_dict(
|
168
|
-
self._serverSettingsWidget.getConfiguration(),
|
169
|
-
self._compositionWidget.getConfiguration(),
|
170
|
-
)
|
171
|
-
|
172
|
-
def setConfiguration(self, config: dict):
|
173
|
-
self._serverSettingsWidget.setConfiguration(config)
|
174
|
-
self._compositionWidget.setConfiguration(config)
|