tomwer 1.3.27__py3-none-any.whl → 1.4.0rc0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (632) hide show
  1. orangecontrib/tomwer/orange/managedprocess.py +1 -29
  2. orangecontrib/tomwer/orange/settings.py +2 -28
  3. orangecontrib/tomwer/tests/TestAcquisition.py +220 -0
  4. orangecontrib/tomwer/tutorials/append_raw_darks_and_flats_frames_to_NXtomos.ows +2 -2
  5. orangecontrib/tomwer/tutorials/copy_reduced_darks_and_flats_meth1.ows +1 -1
  6. orangecontrib/tomwer/tutorials/{icat_publication.ows → drac_publication.ows} +7 -21
  7. orangecontrib/tomwer/tutorials/id16b/ID16b_full_volume.ows +22 -0
  8. orangecontrib/tomwer/tutorials/id16b/ID16b_insitu.ows +302 -0
  9. orangecontrib/tomwer/tutorials/id16b/ID16b_normalization.ows +218 -0
  10. orangecontrib/tomwer/tutorials/simple_volume_to_slurm_reconstruction.ows +29 -24
  11. orangecontrib/tomwer/tutorials/test_cor.ows +19 -0
  12. orangecontrib/tomwer/tutorials/volume_casting_on_slurm.ows +54 -0
  13. orangecontrib/tomwer/widgets/__init__.py +3 -5
  14. orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py +35 -54
  15. orangecontrib/tomwer/widgets/cluster/SlurmClusterOW.py +1 -31
  16. orangecontrib/tomwer/widgets/control/AdvancementOW.py +1 -29
  17. orangecontrib/tomwer/widgets/control/DataDiscoveryOW.py +5 -4
  18. orangecontrib/tomwer/widgets/control/DataListenerOW.py +1 -29
  19. orangecontrib/tomwer/widgets/control/DataSelectorOW.py +11 -30
  20. orangecontrib/tomwer/widgets/control/DataTransfertOW.py +2 -28
  21. orangecontrib/tomwer/widgets/control/DataValidatorOW.py +1 -28
  22. orangecontrib/tomwer/widgets/control/DataWatcherOW.py +1 -28
  23. orangecontrib/tomwer/widgets/control/EDF2NXTomomillOW.py +48 -51
  24. orangecontrib/tomwer/widgets/control/EmailOW.py +12 -2
  25. orangecontrib/tomwer/widgets/control/FilterOW.py +1 -28
  26. orangecontrib/tomwer/widgets/control/NXTomomillOW.py +37 -53
  27. orangecontrib/tomwer/widgets/control/NXtomoConcatenate.py +21 -20
  28. orangecontrib/tomwer/widgets/control/NotifierOW.py +9 -28
  29. orangecontrib/tomwer/widgets/control/ReduceDarkFlatSelectorOW.py +3 -2
  30. orangecontrib/tomwer/widgets/control/SingleTomoObjOW.py +1 -27
  31. orangecontrib/tomwer/widgets/control/TimerOW.py +9 -28
  32. orangecontrib/tomwer/widgets/control/TomoObjSeriesOW.py +58 -0
  33. orangecontrib/tomwer/widgets/control/VolumeSelector.py +8 -30
  34. orangecontrib/tomwer/widgets/control/icons/nxtomomill.svg +173 -119
  35. orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.png +0 -0
  36. orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.svg +55 -195
  37. orangecontrib/tomwer/widgets/control/icons/{tomoobjserie.svg → tomoobjseries.svg} +2 -2
  38. orangecontrib/tomwer/widgets/dataportal/PublishProcessedDataOW.py +172 -0
  39. orangecontrib/tomwer/widgets/{icat → dataportal}/__init__.py +2 -2
  40. orangecontrib/tomwer/widgets/debugtools/DatasetGeneratorOW.py +2 -29
  41. orangecontrib/tomwer/widgets/debugtools/ObjectInspectorOW.py +1 -29
  42. orangecontrib/tomwer/widgets/edit/DarkFlatPatchOW.py +48 -73
  43. orangecontrib/tomwer/widgets/edit/ImageKeyEditorOW.py +48 -75
  44. orangecontrib/tomwer/widgets/edit/ImageKeyUpgraderOW.py +5 -30
  45. orangecontrib/tomwer/widgets/edit/NXtomoEditorOW.py +51 -52
  46. orangecontrib/tomwer/widgets/other/PythonScriptOW.py +22 -10
  47. orangecontrib/tomwer/widgets/reconstruction/AxisOW.py +48 -49
  48. orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py +22 -68
  49. orangecontrib/tomwer/widgets/reconstruction/DarkRefAndCopyOW.py +3 -30
  50. orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py +21 -19
  51. orangecontrib/tomwer/widgets/reconstruction/NabuOW.py +7 -70
  52. orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py +40 -85
  53. orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py +15 -40
  54. orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py +13 -35
  55. orangecontrib/tomwer/widgets/reconstruction/SinoNormOW.py +2 -30
  56. orangecontrib/tomwer/widgets/stitching/ZStitchingConfigOW.py +11 -11
  57. orangecontrib/tomwer/widgets/utils.py +2 -29
  58. orangecontrib/tomwer/widgets/visualization/DataViewerOW.py +1 -27
  59. orangecontrib/tomwer/widgets/visualization/DiffViewerOW.py +1 -27
  60. orangecontrib/tomwer/widgets/visualization/NXtomoMetadataViewerOW.py +1 -1
  61. orangecontrib/tomwer/widgets/visualization/RadioStackOW.py +2 -28
  62. orangecontrib/tomwer/widgets/visualization/SampleMovedOW.py +1 -27
  63. orangecontrib/tomwer/widgets/visualization/SinogramViewerOW.py +1 -27
  64. orangecontrib/tomwer/widgets/visualization/SliceStackOW.py +2 -28
  65. tomwer/__init__.py +3 -28
  66. tomwer/__main__.py +8 -4
  67. tomwer/app/__init__.py +2 -0
  68. tomwer/app/axis.py +8 -7
  69. tomwer/app/canvas.py +23 -29
  70. tomwer/app/canvas_launcher/config.py +14 -102
  71. tomwer/app/canvas_launcher/environ.py +5 -8
  72. tomwer/app/canvas_launcher/mainwindow.py +175 -69
  73. tomwer/app/canvas_launcher/splash.py +1 -3
  74. tomwer/app/canvas_launcher/utils.py +47 -0
  75. tomwer/app/canvas_launcher/widgetsscheme.py +3 -10
  76. tomwer/app/diffframe.py +2 -0
  77. tomwer/app/imagekeyeditor.py +2 -1
  78. tomwer/app/imagekeyupgrader.py +2 -0
  79. tomwer/app/multicor.py +5 -2
  80. tomwer/app/multipag.py +7 -4
  81. tomwer/app/nabuapp.py +2 -1
  82. tomwer/app/nxtomoeditor.py +17 -12
  83. tomwer/app/patchrawdarkflat.py +2 -0
  84. tomwer/app/radiostack.py +3 -2
  85. tomwer/app/reducedarkflat.py +3 -0
  86. tomwer/app/samplemoved.py +2 -0
  87. tomwer/app/scanviewer.py +2 -0
  88. tomwer/app/sinogramviewer.py +2 -0
  89. tomwer/app/slicestack.py +11 -13
  90. tomwer/app/stitching/common.py +431 -0
  91. tomwer/app/stopdatalistener.py +3 -0
  92. tomwer/app/ystitching.py +26 -0
  93. tomwer/app/zstitching.py +8 -363
  94. tomwer/core/__init__.py +2 -28
  95. tomwer/core/cluster/__init__.py +3 -0
  96. tomwer/core/cluster/cluster.py +10 -26
  97. tomwer/core/futureobject.py +17 -43
  98. tomwer/core/log/__init__.py +2 -0
  99. tomwer/core/log/processlog.py +0 -28
  100. tomwer/core/process/cluster/supervisor.py +52 -34
  101. tomwer/core/process/conditions/filters.py +3 -28
  102. tomwer/core/process/control/datalistener/datalistener.py +7 -75
  103. tomwer/core/process/control/datalistener/rpcserver.py +8 -38
  104. tomwer/core/process/control/datawatcher/datawatcher.py +11 -40
  105. tomwer/core/process/control/datawatcher/datawatcherobserver.py +30 -64
  106. tomwer/core/process/control/datawatcher/datawatcherprocess.py +11 -32
  107. tomwer/core/process/control/datawatcher/edfdwprocess.py +2 -27
  108. tomwer/core/process/control/datawatcher/hdf5dwprocess.py +1 -26
  109. tomwer/core/process/control/datawatcher/status.py +1 -26
  110. tomwer/core/process/control/emailnotifier.py +11 -23
  111. tomwer/core/process/control/nxtomoconcatenate.py +20 -18
  112. tomwer/core/process/control/nxtomomill.py +9 -44
  113. tomwer/core/process/control/scanlist.py +0 -27
  114. tomwer/core/process/control/scantransfer.py +15 -13
  115. tomwer/core/process/control/scanvalidator.py +4 -30
  116. tomwer/core/process/control/{test → tests}/test_concatenate_nxtomos.py +5 -5
  117. tomwer/core/process/control/timer.py +1 -27
  118. tomwer/core/process/control/tomoobjseries.py +12 -0
  119. tomwer/core/process/drac/binning.py +37 -0
  120. tomwer/core/process/drac/dracbase.py +170 -0
  121. tomwer/core/process/drac/gallery.py +109 -0
  122. tomwer/core/process/drac/output.py +12 -0
  123. tomwer/core/process/drac/processeddataset.py +147 -0
  124. tomwer/core/process/drac/publish.py +118 -0
  125. tomwer/core/process/drac/rawdataset.py +142 -0
  126. tomwer/core/process/drac/tests/test_gallery.py +71 -0
  127. tomwer/core/process/drac/tests/test_icat_processed_dataset.py +80 -0
  128. tomwer/core/process/drac/tests/test_icat_raw_dataset.py +90 -0
  129. tomwer/core/process/edit/darkflatpatch.py +1 -28
  130. tomwer/core/process/edit/imagekeyeditor.py +4 -32
  131. tomwer/core/process/edit/nxtomoeditor.py +307 -0
  132. tomwer/core/process/edit/tests/test_darkflatpatch.py +243 -0
  133. tomwer/core/process/edit/tests/test_imagekey_editor.py +99 -0
  134. tomwer/core/process/output.py +9 -2
  135. tomwer/core/process/reconstruction/__init__.py +0 -26
  136. tomwer/core/process/reconstruction/axis/anglemode.py +1 -29
  137. tomwer/core/process/reconstruction/axis/axis.py +63 -111
  138. tomwer/core/process/reconstruction/axis/mode.py +5 -3
  139. tomwer/core/process/reconstruction/axis/params.py +5 -146
  140. tomwer/core/process/reconstruction/axis/projectiontype.py +0 -28
  141. tomwer/core/process/reconstruction/darkref/darkrefs.py +14 -39
  142. tomwer/core/process/reconstruction/darkref/darkrefscopy.py +7 -39
  143. tomwer/core/process/reconstruction/darkref/params.py +1 -28
  144. tomwer/core/process/reconstruction/nabu/castvolume.py +19 -34
  145. tomwer/core/process/reconstruction/nabu/nabucommon.py +18 -43
  146. tomwer/core/process/reconstruction/nabu/nabuscores.py +47 -48
  147. tomwer/core/process/reconstruction/nabu/nabuslices.py +59 -105
  148. tomwer/core/process/reconstruction/nabu/nabuvolume.py +44 -70
  149. tomwer/core/process/reconstruction/nabu/plane.py +10 -0
  150. tomwer/core/process/reconstruction/nabu/settings.py +1 -28
  151. tomwer/core/process/reconstruction/nabu/target.py +0 -28
  152. tomwer/core/process/reconstruction/nabu/test/test_castvolume.py +116 -0
  153. tomwer/core/process/reconstruction/nabu/test/test_nabu_utils.py +277 -0
  154. tomwer/core/process/reconstruction/nabu/test/test_nabunormalization.py +199 -0
  155. tomwer/core/process/reconstruction/nabu/utils.py +11 -60
  156. tomwer/core/process/reconstruction/normalization/normalization.py +2 -32
  157. tomwer/core/process/reconstruction/normalization/params.py +3 -35
  158. tomwer/core/process/reconstruction/output.py +14 -19
  159. tomwer/core/process/reconstruction/paramsbase.py +4 -33
  160. tomwer/core/process/reconstruction/saaxis/params.py +5 -33
  161. tomwer/core/process/reconstruction/saaxis/saaxis.py +18 -47
  162. tomwer/core/process/reconstruction/sadeltabeta/params.py +2 -31
  163. tomwer/core/process/reconstruction/sadeltabeta/sadeltabeta.py +16 -44
  164. tomwer/core/process/reconstruction/scores/params.py +9 -39
  165. tomwer/core/process/reconstruction/scores/scores.py +10 -42
  166. tomwer/core/process/reconstruction/tests/__init__.py +0 -0
  167. tomwer/core/process/reconstruction/tests/test_axis.py +46 -0
  168. tomwer/core/process/reconstruction/tests/test_darkref.py +33 -0
  169. tomwer/core/process/reconstruction/{test → tests}/test_saaxis.py +1 -27
  170. tomwer/core/process/reconstruction/tests/test_sadeltabeta.py +48 -0
  171. tomwer/core/process/script/python.py +1 -27
  172. tomwer/core/process/script/tests/test_script.py +41 -0
  173. tomwer/core/process/stitching/metadataholder.py +5 -4
  174. tomwer/core/process/stitching/nabustitcher.py +35 -5
  175. tomwer/core/process/stitching/tests/test_metadataholder.py +17 -0
  176. tomwer/core/process/task.py +20 -63
  177. tomwer/core/process/tests/__init__.py +0 -0
  178. tomwer/core/process/{test → tests}/test_axis.py +1 -79
  179. tomwer/core/process/{test → tests}/test_conditions.py +1 -28
  180. tomwer/core/process/{test → tests}/test_dark_and_flat.py +1 -27
  181. tomwer/core/process/{test → tests}/test_data_listener.py +1 -27
  182. tomwer/core/process/{test → tests}/test_data_transfer.py +2 -28
  183. tomwer/core/process/{test → tests}/test_data_watcher.py +1 -27
  184. tomwer/core/process/{test → tests}/test_nabu.py +4 -33
  185. tomwer/core/process/{test → tests}/test_normalization.py +1 -26
  186. tomwer/core/process/{test → tests}/test_timer.py +1 -27
  187. tomwer/core/process/utils.py +2 -31
  188. tomwer/core/process/visualization/dataviewer.py +1 -26
  189. tomwer/core/process/visualization/diffviewer.py +1 -26
  190. tomwer/core/process/visualization/imagestackviewer.py +0 -26
  191. tomwer/core/process/visualization/radiostack.py +0 -26
  192. tomwer/core/process/visualization/samplemoved.py +0 -28
  193. tomwer/core/process/visualization/sinogramviewer.py +0 -27
  194. tomwer/core/process/visualization/slicestack.py +0 -28
  195. tomwer/core/process/visualization/tests/test_data_viewer.py +12 -0
  196. tomwer/core/process/visualization/tests/test_diff_viewer.py +12 -0
  197. tomwer/core/process/visualization/tests/test_image_stack_viewer.py +14 -0
  198. tomwer/core/process/visualization/tests/test_radio_stack.py +12 -0
  199. tomwer/core/process/visualization/tests/test_sample_moved.py +14 -0
  200. tomwer/core/process/visualization/tests/test_sinogram_viewer.py +13 -0
  201. tomwer/core/process/visualization/tests/test_slice_stack.py +13 -0
  202. tomwer/core/process/visualization/tests/test_volume_viewer.py +12 -0
  203. tomwer/core/process/visualization/volumeviewer.py +0 -29
  204. tomwer/core/scan/__init__.py +3 -27
  205. tomwer/core/scan/blissscan.py +5 -34
  206. tomwer/core/scan/edfscan.py +19 -53
  207. tomwer/core/scan/hdf5scan.py +2 -2
  208. tomwer/core/scan/nxtomoscan.py +46 -54
  209. tomwer/core/scan/scanbase.py +104 -200
  210. tomwer/core/scan/scanfactory.py +11 -41
  211. tomwer/core/scan/tests/__init__.py +0 -0
  212. tomwer/core/scan/tests/test_edf.py +25 -0
  213. tomwer/core/scan/tests/test_future_scan.py +35 -0
  214. tomwer/core/scan/tests/test_nxtomoscan.py +143 -0
  215. tomwer/core/scan/{test → tests}/test_process_registration.py +1 -28
  216. tomwer/core/settings.py +18 -40
  217. tomwer/core/tests/__init__.py +0 -0
  218. tomwer/core/tests/test_scanutils.py +26 -0
  219. tomwer/core/{test → tests}/test_utils.py +1 -28
  220. tomwer/core/tomwer_object.py +4 -0
  221. tomwer/core/utils/__init__.py +2 -0
  222. tomwer/core/utils/char.py +0 -28
  223. tomwer/core/utils/deprecation.py +12 -38
  224. tomwer/core/utils/dictutils.py +1 -3
  225. tomwer/core/utils/ftseriesutils.py +1 -27
  226. tomwer/core/utils/gpu.py +0 -28
  227. tomwer/core/utils/image.py +8 -39
  228. tomwer/core/utils/locker.py +1 -28
  229. tomwer/core/utils/logconfig.py +0 -27
  230. tomwer/core/utils/normalization.py +4 -31
  231. tomwer/core/utils/nxtomoutils.py +8 -38
  232. tomwer/core/utils/resource.py +0 -26
  233. tomwer/core/utils/scanutils.py +23 -52
  234. tomwer/core/utils/slurm.py +7 -30
  235. tomwer/core/utils/spec.py +6 -6
  236. tomwer/core/utils/tests/__init__.py +0 -0
  237. tomwer/core/utils/tests/test_image.py +30 -0
  238. tomwer/core/utils/tests/test_nxtomo.py +38 -0
  239. tomwer/core/utils/tests/test_scan_utils.py +46 -0
  240. tomwer/core/utils/tests/test_time.py +6 -0
  241. tomwer/core/utils/threads.py +0 -26
  242. tomwer/core/utils/time.py +0 -27
  243. tomwer/core/volume/__init__.py +4 -0
  244. tomwer/core/volume/edfvolume.py +1 -28
  245. tomwer/core/volume/hdf5volume.py +1 -28
  246. tomwer/core/volume/jp2kvolume.py +1 -27
  247. tomwer/core/volume/rawvolume.py +1 -28
  248. tomwer/core/volume/tests/test_volumes.py +21 -0
  249. tomwer/core/volume/tiffvolume.py +1 -28
  250. tomwer/core/volume/volumebase.py +5 -0
  251. tomwer/core/volume/volumefactory.py +7 -33
  252. tomwer/gui/__init__.py +0 -28
  253. tomwer/gui/cluster/__init__.py +2 -0
  254. tomwer/gui/cluster/slurm.py +297 -95
  255. tomwer/gui/cluster/supervisor.py +1 -27
  256. tomwer/gui/cluster/tests/__init__.py +0 -0
  257. tomwer/gui/cluster/{test → tests}/test_cluster.py +21 -26
  258. tomwer/gui/cluster/{test → tests}/test_supervisor.py +1 -27
  259. tomwer/gui/conditions/__init__.py +2 -0
  260. tomwer/gui/conditions/filter.py +1 -26
  261. tomwer/gui/configuration/__init__.py +2 -0
  262. tomwer/gui/control/__init__.py +2 -0
  263. tomwer/gui/control/actions.py +2 -28
  264. tomwer/gui/control/datadiscovery.py +4 -3
  265. tomwer/gui/control/datalist.py +64 -69
  266. tomwer/gui/control/datalistener.py +1 -39
  267. tomwer/gui/control/datareacheractions.py +1 -28
  268. tomwer/gui/control/datatransfert.py +2 -29
  269. tomwer/gui/control/datavalidator.py +3 -37
  270. tomwer/gui/control/datawatcher/__init__.py +0 -28
  271. tomwer/gui/control/datawatcher/configuration.py +1 -28
  272. tomwer/gui/control/datawatcher/datawatcher.py +3 -32
  273. tomwer/gui/control/datawatcher/datawatcherobserver.py +2 -28
  274. tomwer/gui/control/history.py +5 -35
  275. tomwer/gui/control/nxtomomill.py +3 -30
  276. tomwer/gui/control/observations.py +61 -55
  277. tomwer/gui/control/reducedarkflatselector.py +24 -20
  278. tomwer/gui/control/scanselectorwidget.py +2 -28
  279. tomwer/gui/control/selectorwidgetbase.py +17 -17
  280. tomwer/gui/control/series/__init__.py +0 -0
  281. tomwer/gui/control/{serie/seriecreator.py → series/seriescreator.py} +214 -235
  282. tomwer/gui/control/series/serieswaiter.py +0 -0
  283. tomwer/gui/control/series/test/test_creator.py +424 -0
  284. tomwer/gui/control/series/test/test_nxtomo_concatenate.py +21 -0
  285. tomwer/gui/control/singletomoobj.py +1 -1
  286. tomwer/gui/control/tests/__init__.py +0 -0
  287. tomwer/gui/control/tests/test_datalist.py +47 -0
  288. tomwer/gui/control/{test → tests}/test_datalistener.py +1 -28
  289. tomwer/gui/control/tests/test_datavalidator.py +27 -0
  290. tomwer/gui/control/{test → tests}/test_inputwidget.py +1 -27
  291. tomwer/gui/control/tests/test_process_manager.py +38 -0
  292. tomwer/gui/control/tests/test_scan_observations.py +23 -0
  293. tomwer/gui/control/tests/test_scanselector.py +42 -0
  294. tomwer/gui/control/{test → tests}/test_scanvalidator.py +1 -27
  295. tomwer/gui/control/{test → tests}/test_volume_dialog.py +2 -30
  296. tomwer/gui/control/{test → tests}/test_volumeselector.py +1 -27
  297. tomwer/gui/control/volumeselectorwidget.py +2 -30
  298. tomwer/gui/dataportal/__init__.py +2 -0
  299. tomwer/gui/{icat → dataportal}/createscreenshots.py +3 -2
  300. tomwer/gui/dataportal/gallery.py +133 -0
  301. tomwer/gui/dataportal/outputformat.py +0 -0
  302. tomwer/gui/dataportal/publish.py +96 -0
  303. tomwer/gui/dataportal/tests/test_create_screenshots_gui.py +23 -0
  304. tomwer/gui/dataportal/tests/test_gallery_gui.py +21 -0
  305. tomwer/gui/debugtools/__init__.py +2 -0
  306. tomwer/gui/debugtools/datasetgenerator.py +1 -30
  307. tomwer/gui/debugtools/objectinspector.py +1 -29
  308. tomwer/gui/dialog/QDataDialog.py +89 -0
  309. tomwer/gui/{qfolderdialog.py → dialog/QVolumeDialog.py} +8 -107
  310. tomwer/gui/dialog/__init__.py +1 -0
  311. tomwer/gui/edit/__init__.py +2 -0
  312. tomwer/gui/edit/dkrfpatch.py +52 -87
  313. tomwer/gui/edit/imagekeyeditor.py +18 -54
  314. tomwer/gui/edit/nxtomoeditor.py +113 -300
  315. tomwer/gui/edit/nxtomowarmer.py +3 -2
  316. tomwer/gui/edit/tests/__init__.py +0 -0
  317. tomwer/gui/edit/{test → tests}/test_dkrf_patch.py +3 -29
  318. tomwer/gui/edit/{test → tests}/test_image_key_editor.py +1 -27
  319. tomwer/gui/edit/{test → tests}/test_nx_editor.py +45 -23
  320. tomwer/gui/icons.py +28 -66
  321. tomwer/gui/illustrations.py +4 -34
  322. tomwer/gui/imagefromfile.py +5 -30
  323. tomwer/gui/metadataloader.py +36 -0
  324. tomwer/gui/qconfigfile.py +3 -0
  325. tomwer/gui/qlefilesystem.py +3 -0
  326. tomwer/gui/reconstruction/__init__.py +2 -0
  327. tomwer/gui/reconstruction/axis/AxisMainWindow.py +264 -0
  328. tomwer/gui/reconstruction/axis/AxisOptionsWidget.py +153 -0
  329. tomwer/gui/reconstruction/axis/AxisSettingsWidget.py +776 -0
  330. tomwer/gui/reconstruction/axis/AxisWidget.py +526 -0
  331. tomwer/gui/reconstruction/axis/CalculationWidget.py +374 -0
  332. tomwer/gui/reconstruction/axis/CompareImages.py +11 -44
  333. tomwer/gui/reconstruction/axis/ControlWidget.py +277 -0
  334. tomwer/gui/reconstruction/axis/InputWidget.py +491 -0
  335. tomwer/gui/reconstruction/axis/ManualFramesSelection.py +168 -0
  336. tomwer/gui/reconstruction/axis/__init__.py +2 -2
  337. tomwer/gui/reconstruction/darkref/__init__.py +0 -27
  338. tomwer/gui/reconstruction/darkref/darkrefcopywidget.py +5 -34
  339. tomwer/gui/reconstruction/darkref/darkrefwidget.py +1 -27
  340. tomwer/gui/reconstruction/nabu/castvolume.py +40 -59
  341. tomwer/gui/reconstruction/nabu/check.py +7 -33
  342. tomwer/gui/reconstruction/nabu/nabuconfig/base.py +7 -34
  343. tomwer/gui/reconstruction/nabu/nabuconfig/ctf.py +6 -5
  344. tomwer/gui/reconstruction/nabu/nabuconfig/nabuconfig.py +10 -69
  345. tomwer/gui/reconstruction/nabu/nabuconfig/output.py +3 -47
  346. tomwer/gui/reconstruction/nabu/nabuconfig/phase.py +54 -36
  347. tomwer/gui/reconstruction/nabu/nabuconfig/preprocessing.py +103 -54
  348. tomwer/gui/reconstruction/nabu/nabuconfig/reconstruction.py +116 -65
  349. tomwer/gui/reconstruction/nabu/nabuflow.py +31 -61
  350. tomwer/gui/reconstruction/nabu/platform.py +94 -0
  351. tomwer/gui/reconstruction/nabu/slices.py +81 -45
  352. tomwer/gui/reconstruction/nabu/slurm.py +1 -27
  353. tomwer/gui/reconstruction/nabu/test/test_cast_volume.py +82 -0
  354. tomwer/gui/reconstruction/nabu/test/test_check.py +66 -0
  355. tomwer/gui/reconstruction/nabu/test/test_ctf.py +46 -0
  356. tomwer/gui/reconstruction/nabu/test/test_helical.py +21 -0
  357. tomwer/gui/reconstruction/nabu/test/test_nabu_preprocessing.py +81 -0
  358. tomwer/gui/reconstruction/nabu/volume.py +62 -90
  359. tomwer/gui/reconstruction/normalization/intensity.py +5 -32
  360. tomwer/gui/reconstruction/normalization/test/test_intensity.py +89 -0
  361. tomwer/gui/reconstruction/saaxis/corrangeselector.py +16 -49
  362. tomwer/gui/reconstruction/saaxis/dimensionwidget.py +56 -96
  363. tomwer/gui/reconstruction/saaxis/saaxis.py +17 -38
  364. tomwer/gui/reconstruction/saaxis/sliceselector.py +8 -39
  365. tomwer/gui/reconstruction/sadeltabeta/saadeltabeta.py +19 -37
  366. tomwer/gui/reconstruction/scores/control.py +2 -30
  367. tomwer/gui/reconstruction/scores/scoreplot.py +19 -48
  368. tomwer/gui/reconstruction/tests/__init__.py +0 -0
  369. tomwer/gui/reconstruction/{test → tests}/test_axis.py +23 -49
  370. tomwer/gui/reconstruction/{test → tests}/test_nabu.py +8 -31
  371. tomwer/gui/reconstruction/{test → tests}/test_saaxis.py +10 -37
  372. tomwer/gui/reconstruction/{test → tests}/test_sadeltabeta.py +1 -26
  373. tomwer/gui/samplemoved/__init__.py +2 -30
  374. tomwer/gui/samplemoved/selectiontable.py +3 -33
  375. tomwer/gui/settings.py +7 -0
  376. tomwer/gui/stackplot.py +33 -661
  377. tomwer/gui/stacks.py +261 -135
  378. tomwer/gui/stitching/SingleAxisStitchingWidget.py +326 -0
  379. tomwer/gui/stitching/StitchingOptionsWidget.py +438 -0
  380. tomwer/gui/stitching/StitchingWindow.py +586 -0
  381. tomwer/gui/stitching/__init__.py +2 -0
  382. tomwer/gui/stitching/alignment.py +90 -0
  383. tomwer/gui/stitching/axisorderedlist.py +44 -34
  384. tomwer/gui/stitching/config/axisparams.py +23 -11
  385. tomwer/gui/stitching/config/output.py +6 -5
  386. tomwer/gui/stitching/config/positionoveraxis.py +313 -51
  387. tomwer/gui/stitching/config/stitchingstrategies.py +22 -16
  388. tomwer/gui/stitching/config/tests/test_axisparams.py +25 -0
  389. tomwer/gui/stitching/config/tomoobjdetails.py +3 -5
  390. tomwer/gui/stitching/normalization.py +1 -0
  391. tomwer/gui/stitching/preview.py +59 -0
  392. tomwer/gui/stitching/singleaxis.py +57 -0
  393. tomwer/gui/stitching/stitchandbackground.py +3 -2
  394. tomwer/gui/stitching/stitching_preview.py +44 -36
  395. tomwer/gui/stitching/stitching_raw.py +5 -3
  396. tomwer/gui/stitching/tests/test_ZStitchingWindow.py +88 -0
  397. tomwer/gui/stitching/tests/test_axis_ordered_list.py +21 -0
  398. tomwer/gui/stitching/tests/test_normalization.py +27 -0
  399. tomwer/gui/stitching/tests/test_preview.py +68 -0
  400. tomwer/gui/stitching/tests/test_stitching_raw.py +110 -0
  401. tomwer/gui/stitching/tests/utils.py +92 -0
  402. tomwer/gui/stitching/utils.py +14 -0
  403. tomwer/gui/stitching/z_stitching/fineestimation.py +4 -32
  404. tomwer/gui/stitching/z_stitching/tests/test_fine_estimation.py +35 -0
  405. tomwer/gui/stitching/z_stitching/tests/test_raw_estimation.py +215 -0
  406. tomwer/gui/stitching/z_stitching/tests/test_stitching_window.py +51 -0
  407. tomwer/gui/tests/__init__.py +0 -0
  408. tomwer/gui/tests/test_axis_gui.py +27 -0
  409. tomwer/gui/{test → tests}/test_qfolder_dialog.py +1 -1
  410. tomwer/gui/utils/RangeWidget.py +44 -0
  411. tomwer/gui/utils/buttons.py +4 -3
  412. tomwer/gui/utils/completer.py +2 -33
  413. tomwer/gui/utils/flow.py +11 -40
  414. tomwer/gui/utils/gpu.py +60 -0
  415. tomwer/gui/utils/illustrations.py +1 -26
  416. tomwer/gui/utils/inputwidget.py +35 -73
  417. tomwer/gui/utils/lineselector/lineselector.py +9 -46
  418. tomwer/gui/utils/loadingmode.py +81 -0
  419. tomwer/gui/utils/qt_utils.py +9 -0
  420. tomwer/gui/utils/sandboxes.py +1 -26
  421. tomwer/gui/utils/scandescription.py +2 -31
  422. tomwer/gui/utils/scrollarea.py +6 -55
  423. tomwer/gui/utils/slider.py +4 -28
  424. tomwer/gui/utils/splashscreen.py +0 -28
  425. tomwer/gui/utils/step.py +14 -13
  426. tomwer/gui/utils/tests/test_completer.py +41 -0
  427. tomwer/gui/utils/tests/test_line_selector.py +21 -0
  428. tomwer/gui/utils/tests/test_splashscreen.py +8 -0
  429. tomwer/gui/utils/tests/test_vignettes.py +68 -0
  430. tomwer/gui/utils/unitsystem.py +15 -69
  431. tomwer/gui/utils/utils.py +4 -5
  432. tomwer/gui/utils/vignettes.py +10 -41
  433. tomwer/gui/utils/waiterthread.py +0 -26
  434. tomwer/gui/visualization/__init__.py +2 -0
  435. tomwer/gui/visualization/dataviewer.py +68 -421
  436. tomwer/gui/visualization/diffviewer/diffviewer.py +2 -30
  437. tomwer/gui/visualization/diffviewer/shiftwidget.py +4 -29
  438. tomwer/gui/visualization/fullscreenplot.py +5 -5
  439. tomwer/gui/visualization/imagestack.py +403 -0
  440. tomwer/gui/visualization/nxtomometadata.py +0 -4
  441. tomwer/gui/visualization/reconstructionparameters.py +14 -32
  442. tomwer/gui/visualization/scanoverview.py +33 -66
  443. tomwer/gui/visualization/sinogramviewer.py +2 -28
  444. tomwer/gui/visualization/test/__init__.py +0 -28
  445. tomwer/gui/visualization/test/test_dataviewer.py +1 -28
  446. tomwer/gui/visualization/test/test_diffviewer.py +1 -28
  447. tomwer/gui/visualization/test/test_nx_tomo_metadata_viewer.py +0 -5
  448. tomwer/gui/visualization/test/test_reconstruction_parameters.py +1 -27
  449. tomwer/gui/visualization/test/test_sinogramviewer.py +1 -28
  450. tomwer/gui/visualization/test/test_stacks.py +184 -115
  451. tomwer/gui/visualization/test/test_volumeviewer.py +3 -2
  452. tomwer/gui/visualization/tomoobjoverview.py +2 -2
  453. tomwer/gui/visualization/volumeoverview.py +3 -2
  454. tomwer/gui/visualization/volumeviewer.py +47 -43
  455. tomwer/io/__init__.py +2 -0
  456. tomwer/io/utils/h5pyutils.py +1 -27
  457. tomwer/io/utils/test/test_raw_and_processed_data.py +10 -0
  458. tomwer/io/utils/test/test_utils.py +67 -0
  459. tomwer/io/utils/utils.py +2 -31
  460. tomwer/resources/__init__.py +13 -33
  461. tomwer/resources/gui/icons/edit_downstream.svg +114 -0
  462. tomwer/resources/gui/icons/edit_upstream.svg +112 -0
  463. tomwer/resources/gui/icons/free_edition.svg +23 -0
  464. tomwer/resources/gui/icons/icat_gallery_opts.png +0 -0
  465. tomwer/resources/gui/icons/icat_gallery_opts.svg +80 -0
  466. tomwer/resources/gui/icons/search.png +0 -0
  467. tomwer/resources/gui/icons/search.svg +23 -0
  468. tomwer/resources/gui/icons/warning.png +0 -0
  469. tomwer/synctools/__init__.py +2 -0
  470. tomwer/synctools/axis.py +1 -27
  471. tomwer/synctools/darkref.py +1 -26
  472. tomwer/synctools/datalistener.py +1 -27
  473. tomwer/synctools/datatransfert.py +2 -27
  474. tomwer/synctools/imageloaderthread.py +1 -28
  475. tomwer/synctools/rsyncmanager.py +1 -25
  476. tomwer/synctools/saaxis.py +1 -26
  477. tomwer/synctools/sadeltabeta.py +1 -26
  478. tomwer/synctools/stacks/control/datalistener.py +1 -26
  479. tomwer/synctools/stacks/processingstack.py +4 -33
  480. tomwer/synctools/stacks/reconstruction/axis.py +2 -31
  481. tomwer/synctools/stacks/reconstruction/castvolume.py +12 -43
  482. tomwer/synctools/stacks/reconstruction/dkrefcopy.py +3 -26
  483. tomwer/synctools/stacks/reconstruction/nabu.py +1 -26
  484. tomwer/synctools/stacks/reconstruction/normalization.py +1 -26
  485. tomwer/synctools/stacks/reconstruction/saaxis.py +1 -26
  486. tomwer/synctools/stacks/reconstruction/sadeltabeta.py +1 -26
  487. tomwer/synctools/tests/__init__.py +0 -0
  488. tomwer/synctools/{test → tests}/test_darkRefs.py +16 -40
  489. tomwer/synctools/{test → tests}/test_foldertransfer.py +2 -33
  490. tomwer/synctools/utils/scanstages.py +2 -31
  491. tomwer/tests/__init__.py +1 -0
  492. tomwer/tests/app/test_stitching.py +95 -0
  493. tomwer/tests/datasets.py +1 -5
  494. tomwer/tests/orangecontrib/tomwer/widgets/cluster/tests/test_future_supervisorow.py +48 -0
  495. tomwer/tests/orangecontrib/tomwer/widgets/cluster/tests/test_slurm_clusterow.py +40 -0
  496. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_advancement.py +8 -0
  497. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_data_validator.py +55 -0
  498. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datadiscovery.py +129 -0
  499. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datalistener.py +111 -0
  500. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_dataselector.py +69 -0
  501. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datawatcher.py +411 -0
  502. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_emailow.py +29 -0
  503. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_notifier.py +24 -0
  504. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_nxtomo_concatenate_ow.py +64 -0
  505. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_nxtomomill.py +133 -0
  506. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_reduce_dark_flat_selector.py +40 -0
  507. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_singletomoobj.py +40 -0
  508. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_timerow.py +25 -0
  509. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_tomoobj_series.py +96 -0
  510. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_volume_selector.py +69 -0
  511. orangecontrib/tomwer/widgets/edit/test/test_image_key_editor.py → tomwer/tests/orangecontrib/tomwer/widgets/debugtools/tests/test_dataset_generator.py +17 -16
  512. tomwer/tests/orangecontrib/tomwer/widgets/debugtools/tests/test_object_inspector.py +36 -0
  513. {orangecontrib/tomwer/widgets/edit/test → tomwer/tests/orangecontrib/tomwer/widgets/edit/tests}/test_dark_flat_patch.py +1 -27
  514. tomwer/tests/orangecontrib/tomwer/widgets/edit/tests/test_image_key_editor.py +30 -0
  515. tomwer/tests/orangecontrib/tomwer/widgets/edit/tests/test_nxtomo_editor.py +138 -0
  516. tomwer/tests/orangecontrib/tomwer/widgets/other/tests/test_pythonscript.py +31 -0
  517. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_axis.py +215 -0
  518. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_cast_volumeow.py +58 -0
  519. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_dark_refs_widget.py +136 -0
  520. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_delta_beta_selector.py +15 -0
  521. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_i_norm.py +200 -0
  522. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_helical_prepare_weights_double.py +20 -0
  523. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_volume.py +74 -0
  524. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_widget.py +107 -0
  525. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_sa_delta_beta.py +194 -0
  526. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_saaxis.py +194 -0
  527. tomwer/tests/orangecontrib/tomwer/widgets/stitching/tests/test_zstitching.py +313 -0
  528. tomwer/tests/orangecontrib/tomwer/widgets/tests/test_conditions.py +85 -0
  529. tomwer/tests/orangecontrib/tomwer/widgets/tests/test_darkref.py +225 -0
  530. tomwer/tests/orangecontrib/tomwer/widgets/tests/test_foldertransfert.py +105 -0
  531. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_dataviewerow.py +57 -0
  532. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_diffviewerow.py +39 -0
  533. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_nxtomo_metadata_viewer.py +29 -0
  534. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_radio_stackow.py +31 -0
  535. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_sample_movedow.py +46 -0
  536. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_sinogram_viewerow.py +31 -0
  537. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_slice_stackow.py +31 -0
  538. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_volume_viewerow.py +32 -0
  539. tomwer/tests/test_ewoks/test_conversion.py +104 -0
  540. tomwer/tests/test_ewoks/test_single_node_execution.py +87 -0
  541. tomwer/tests/test_ewoks/test_workflows.py +138 -0
  542. tomwer/utils.py +11 -39
  543. tomwer/version.py +3 -3
  544. {tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/LICENSE +3 -3
  545. tomwer-1.4.0rc0.dist-info/METADATA +337 -0
  546. tomwer-1.4.0rc0.dist-info/RECORD +909 -0
  547. {tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/WHEEL +1 -1
  548. {tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/entry_points.txt +1 -0
  549. orangecontrib/tomwer/widgets/control/DataListOW.py +0 -129
  550. orangecontrib/tomwer/widgets/control/TomoObjSerieOW.py +0 -86
  551. orangecontrib/tomwer/widgets/control/VolumeSymLinkOW.py +0 -182
  552. orangecontrib/tomwer/widgets/edit/test/test_nxtomo_editor.py +0 -141
  553. orangecontrib/tomwer/widgets/icat/PublishProcessedDataOW.py +0 -115
  554. orangecontrib/tomwer/widgets/icat/RawDataScreenshotCreatorOW.py +0 -98
  555. orangecontrib/tomwer/widgets/icat/SaveToGalleryAndPublishOW.py +0 -129
  556. orangecontrib/tomwer/widgets/icat/icons/add_gallery.png +0 -0
  557. orangecontrib/tomwer/widgets/icat/icons/add_gallery.svg +0 -82
  558. orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.png +0 -0
  559. orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.svg +0 -143
  560. orangecontrib/tomwer/widgets/visualization/LivesliceOW.py +0 -87
  561. orangecontrib/tomwer/widgets/visualization/icons/liveslice.png +0 -0
  562. orangecontrib/tomwer/widgets/visualization/icons/liveslice.svg +0 -110
  563. tomwer/core/log/logger.py +0 -130
  564. tomwer/core/process/control/test/test_volume_link.py +0 -74
  565. tomwer/core/process/control/tomoobjserie.py +0 -12
  566. tomwer/core/process/control/volumesymlink.py +0 -200
  567. tomwer/core/process/icat/createscreenshots.py +0 -100
  568. tomwer/core/process/icat/gallery.py +0 -377
  569. tomwer/core/process/icat/icatbase.py +0 -36
  570. tomwer/core/process/icat/publish.py +0 -228
  571. tomwer/core/process/icat/screenshots.py +0 -27
  572. tomwer/core/process/reconstruction/test/test_darkref.py +0 -60
  573. tomwer/core/process/reconstruction/test/test_sadeltabeta.py +0 -74
  574. tomwer/core/process/visualization/liveslice.py +0 -6
  575. tomwer/core/progress.py +0 -100
  576. tomwer/core/scan/test/test_edf.py +0 -53
  577. tomwer/core/scan/test/test_future_scan.py +0 -61
  578. tomwer/core/scan/test/test_h5.py +0 -96
  579. tomwer/core/test/test_scanutils.py +0 -53
  580. tomwer/gui/control/emailnotifier.py +0 -174
  581. tomwer/gui/control/serie/seriewaiter.py +0 -28
  582. tomwer/gui/control/test/__init__.py +0 -28
  583. tomwer/gui/control/test/test_datalist.py +0 -96
  584. tomwer/gui/control/test/test_datavalidator.py +0 -54
  585. tomwer/gui/control/test/test_email.py +0 -35
  586. tomwer/gui/control/test/test_process_manager.py +0 -65
  587. tomwer/gui/control/test/test_scanselector.py +0 -67
  588. tomwer/gui/edit/test/__init__.py +0 -28
  589. tomwer/gui/icat/gallery.py +0 -214
  590. tomwer/gui/icat/publish.py +0 -187
  591. tomwer/gui/reconstruction/axis/axis.py +0 -733
  592. tomwer/gui/reconstruction/axis/radioaxis.py +0 -2467
  593. tomwer/gui/stitching/stitching.py +0 -1388
  594. tomwer/gui/test/__init__.py +0 -28
  595. tomwer/gui/test/test_axis_gui.py +0 -34
  596. tomwer/synctools/stacks/edit/darkflatpatch.py +0 -169
  597. tomwer/synctools/stacks/edit/imagekeyeditor.py +0 -135
  598. tomwer/third_part/WaitingOverlay.py +0 -110
  599. tomwer-1.3.27-py3.11-nspkg.pth +0 -1
  600. tomwer-1.3.27.dist-info/METADATA +0 -292
  601. tomwer-1.3.27.dist-info/RECORD +0 -785
  602. tomwer-1.3.27.dist-info/namespace_packages.txt +0 -1
  603. /orangecontrib/tomwer/{widgets/edit/test → tests}/__init__.py +0 -0
  604. {tomwer/core/process/control/test → orangecontrib/tomwer/tutorials/id16b}/__init__.py +0 -0
  605. {tomwer/core/process/icat → orangecontrib/tomwer/widgets/cluster/tests}/__init__.py +0 -0
  606. /orangecontrib/tomwer/widgets/control/icons/{tomoobjserie.png → tomoobjseries.png} +0 -0
  607. {tomwer/core/process/reconstruction/test → orangecontrib/tomwer/widgets/control/tests}/__init__.py +0 -0
  608. /orangecontrib/tomwer/widgets/{icat → dataportal}/icons/publish_processed_data.png +0 -0
  609. /orangecontrib/tomwer/widgets/{icat → dataportal}/icons/publish_processed_data.svg +0 -0
  610. {tomwer/core/process/test → orangecontrib/tomwer/widgets/debugtools/tests}/__init__.py +0 -0
  611. {tomwer/core/scan/test → orangecontrib/tomwer/widgets/edit/tests}/__init__.py +0 -0
  612. {tomwer/core/test → orangecontrib/tomwer/widgets/other/tests}/__init__.py +0 -0
  613. {tomwer/gui/cluster/test → orangecontrib/tomwer/widgets/reconstruction/tests}/__init__.py +0 -0
  614. {tomwer/gui/control/serie → orangecontrib/tomwer/widgets/stitching/tests}/__init__.py +0 -0
  615. {tomwer/gui/icat → orangecontrib/tomwer/widgets/tests}/__init__.py +0 -0
  616. {tomwer/gui/reconstruction/test → orangecontrib/tomwer/widgets/visualization/tests}/__init__.py +0 -0
  617. /tomwer/{synctools/stacks/edit → app/stitching}/__init__.py +0 -0
  618. /tomwer/{synctools/test → core/process/control/tests}/__init__.py +0 -0
  619. /tomwer/core/process/control/{test → tests}/test_email.py +0 -0
  620. /tomwer/core/process/control/{test → tests}/test_h52nx_process.py +0 -0
  621. /tomwer/{third_part → core/process/drac}/__init__.py +0 -0
  622. /tomwer/core/process/reconstruction/{test → tests}/test_axis_params.py +0 -0
  623. /tomwer/core/process/reconstruction/{test → tests}/test_darkref_copy.py +0 -0
  624. /tomwer/core/process/reconstruction/{test → tests}/test_paramsbase.py +0 -0
  625. /tomwer/core/process/reconstruction/{test → tests}/test_utils.py +0 -0
  626. /tomwer/core/scan/{test → tests}/test_scan.py +0 -0
  627. /tomwer/gui/control/{serie → series}/nxtomoconcatenate.py +0 -0
  628. /tomwer/gui/control/{test → tests}/test_datadiscovery.py +0 -0
  629. /tomwer/gui/control/{test → tests}/test_reducedarkflat_selector.py +0 -0
  630. /tomwer/gui/control/{test → tests}/test_single_tomo_obj.py +0 -0
  631. {orangecontrib/tomwer/widgets/edit/test → tomwer/tests/orangecontrib/tomwer/widgets/edit/tests}/test_image_key_upgrader.py +0 -0
  632. {tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/top_level.txt +0 -0
@@ -1,28 +0,0 @@
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- # coding: utf-8
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- # /*##########################################################################
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- #
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- # Copyright (c) 2016-2017 European Synchrotron Radiation Facility
5
- #
6
- # Permission is hereby granted, free of charge, to any person obtaining a copy
7
- # of this software and associated documentation files (the "Software"), to deal
8
- # in the Software without restriction, including without limitation the rights
9
- # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
10
- # copies of the Software, and to permit persons to whom the Software is
11
- # furnished to do so, subject to the following conditions:
12
- #
13
- # The above copyright notice and this permission notice shall be included in
14
- # all copies or substantial portions of the Software.
15
- #
16
- # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
17
- # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
18
- # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
19
- # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
20
- # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
21
- # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
22
- # THE SOFTWARE.
23
- #
24
- # ###########################################################################*/
25
-
26
- __authors__ = ["H. Payno"]
27
- __license__ = "MIT"
28
- __date__ = "12/01/2022"
@@ -1,28 +0,0 @@
1
- # coding: utf-8
2
- # /*##########################################################################
3
- #
4
- # Copyright (c) 2017 European Synchrotron Radiation Facility
5
- #
6
- # Permission is hereby granted, free of charge, to any person obtaining a copy
7
- # of this software and associated documentation files (the "Software"), to deal
8
- # in the Software without restriction, including without limitation the rights
9
- # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
10
- # copies of the Software, and to permit persons to whom the Software is
11
- # furnished to do so, subject to the following conditions:
12
- #
13
- # The above copyright notice and this permission notice shall be included in
14
- # all copies or substantial portions of the Software.
15
- #
16
- # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
17
- # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
18
- # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
19
- # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
20
- # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
21
- # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
22
- # THE SOFTWARE.
23
- #
24
- # ###########################################################################*/
25
-
26
- __authors__ = ["H.Payno"]
27
- __license__ = "MIT"
28
- __date__ = "29/05/2017"
@@ -1,96 +0,0 @@
1
- # coding: utf-8
2
- # /*##########################################################################
3
- #
4
- # Copyright (c) 2017 European Synchrotron Radiation Facility
5
- #
6
- # Permission is hereby granted, free of charge, to any person obtaining a copy
7
- # of this software and associated documentation files (the "Software"), to deal
8
- # in the Software without restriction, including without limitation the rights
9
- # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
10
- # copies of the Software, and to permit persons to whom the Software is
11
- # furnished to do so, subject to the following conditions:
12
- #
13
- # The above copyright notice and this permission notice shall be included in
14
- # all copies or substantial portions of the Software.
15
- #
16
- # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
17
- # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
18
- # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
19
- # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
20
- # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
21
- # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
22
- # THE SOFTWARE.
23
- #
24
- # ###########################################################################*/
25
- __authors__ = ["H. Payno"]
26
- __license__ = "MIT"
27
- __date__ = "05/11/2018"
28
-
29
-
30
- import tempfile
31
-
32
- import pytest
33
- from silx.gui import qt
34
- from silx.gui.utils.testutils import TestCaseQt
35
-
36
- from tomwer.core.utils.scanutils import MockEDF
37
- from tomwer.gui.control.datalist import GenericScanListDialog, VolumeList
38
- from tomwer.tests.utils import skip_gui_test
39
-
40
-
41
- @pytest.mark.skipif(skip_gui_test(), reason="skip gui test")
42
- class DataListTest(TestCaseQt):
43
- """Test that the datalist widget work correctly"""
44
-
45
- def setUp(self):
46
- super().setUp()
47
- self.widget = GenericScanListDialog(parent=None)
48
- self.widget._callbackRemoveAllFolders()
49
- self.widget.clear()
50
- self._folders = []
51
- for iFolder in range(5):
52
- self._folders.append(tempfile.mkdtemp())
53
- MockEDF.mockScan(
54
- scanID=self._folders[-1], nRadio=5, nRecons=5, nPagRecons=0, dim=10
55
- )
56
-
57
- def tearDown(self):
58
- self.widget.setAttribute(qt.Qt.WA_DeleteOnClose)
59
- self.widget.close()
60
- self.widget = None
61
- self._folders = None
62
- super().tearDown()
63
-
64
- def test(self):
65
- """simple test adding and removing folders"""
66
- for _folder in self._folders:
67
- self.widget.add(_folder)
68
- self.assertEqual(self.widget.n_scan(), len(self._folders))
69
- self.widget.remove(self._folders[0])
70
- self.assertEqual(self.widget.n_scan(), len(self._folders) - 1)
71
- self.assertTrue(self._folders[0] not in self.widget.datalist._myitems)
72
- self.widget.selectAll()
73
- self.widget._removeSelected()
74
- self.assertEqual(self.widget.n_scan(), 0)
75
-
76
-
77
- @pytest.mark.skipif(skip_gui_test(), reason="skip gui test")
78
- def TestVolumeList(TestCaseQt):
79
- """Test VolumeList behave as expected"""
80
-
81
- def setUp(self):
82
- super().setUp()
83
- self.widget = VolumeList(parent=None)
84
- self.folder = tempfile.mkdtemp()
85
-
86
- def tearDown(self):
87
- self.widget.setAttribute(qt.Qt.WA_DeleteOnClose)
88
- self.widget.close()
89
- self.widget = None
90
- self.folder = None
91
- super().tearDown()
92
-
93
- def test(self):
94
- raise NotImplementedError
95
- self.widget.show()
96
- self.qapp.exec_()
@@ -1,54 +0,0 @@
1
- # coding: utf-8
2
- # /*##########################################################################
3
- # Copyright (C) 2016 European Synchrotron Radiation Facility
4
- #
5
- # Permission is hereby granted, free of charge, to any person obtaining a copy
6
- # of this software and associated documentation files (the "Software"), to deal
7
- # in the Software without restriction, including without limitation the rights
8
- # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
9
- # copies of the Software, and to permit persons to whom the Software is
10
- # furnished to do so, subject to the following conditions:
11
- #
12
- # The above copyright notice and this permission notice shall be included in
13
- # all copies or substantial portions of the Software.
14
- #
15
- # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
16
- # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
17
- # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
18
- # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
19
- # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
20
- # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
21
- # THE SOFTWARE.
22
- #
23
- #############################################################################*/
24
-
25
-
26
- __authors__ = ["H. Payno"]
27
- __license__ = "MIT"
28
- __date__ = "30/07/2020"
29
-
30
-
31
- import unittest
32
-
33
- from silx.gui import qt
34
- from silx.gui.utils.testutils import TestCaseQt
35
-
36
- from tomwer.gui.control.datavalidator import DataValidator
37
-
38
-
39
- class TestValidatorGUI(TestCaseQt):
40
- """Test that the ImageStackWidget can be load and remove without any issue"""
41
-
42
- def setUp(self):
43
- TestCaseQt.setUp(self)
44
- self._widget = DataValidator(None)
45
-
46
- def tearDown(self):
47
- self._widget.setAttribute(qt.Qt.WA_DeleteOnClose)
48
- self._widget.close()
49
- self._widget = None
50
- unittest.TestCase.tearDown(self)
51
-
52
- def test(self):
53
- """Make sur the addLeaf and clear functions are working"""
54
- pass
@@ -1,35 +0,0 @@
1
- from tomwer.tests.conftest import qtapp # noqa F401
2
- from tomwer.gui.control.emailnotifier import Emailwidget
3
-
4
-
5
- def test_Emailwidget(qtapp): # noqa F811
6
- """test of Emailwidget"""
7
- widget = Emailwidget()
8
- widget.show()
9
-
10
- assert widget.getConfiguration() == {
11
- "from_addr": "",
12
- "to_addrs": ("",),
13
- "subject": "tomwer: {tomo_obj_short_id} received",
14
- "text": "{tomo_obj_id} received at {timestamp} \n\nprocesses:\n{dataset_processing_states}\n\nfile listening:\n{ls_tomo_obj}\n\nInfo: {footnote}",
15
- "port": 0,
16
- "host": "smtps.esrf.fr",
17
- }
18
-
19
- new_configuration = {
20
- "from_addr": "toto.esrf.fr",
21
- "to_addrs": "toto.esrf.fr;tata.esrf.fr",
22
- "subject": "this is a scan",
23
- "text": "",
24
- "port": 445,
25
- "host": "smtps.esrf.en",
26
- }
27
- widget.setConfiguration(new_configuration)
28
-
29
- configuration = widget.getConfiguration()
30
- new_configuration.pop("to_addrs")
31
- assert configuration.pop("to_addrs") in (
32
- ("toto.esrf.fr", "tata.esrf.fr"),
33
- ("tata.esrf.fr", "toto.esrf.fr"),
34
- )
35
- assert configuration == new_configuration
@@ -1,65 +0,0 @@
1
- # coding: utf-8
2
- # /*##########################################################################
3
- #
4
- # Copyright (c) 2017 European Synchrotron Radiation Facility
5
- #
6
- # Permission is hereby granted, free of charge, to any person obtaining a copy
7
- # of this software and associated documentation files (the "Software"), to deal
8
- # in the Software without restriction, including without limitation the rights
9
- # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
10
- # copies of the Software, and to permit persons to whom the Software is
11
- # furnished to do so, subject to the following conditions:
12
- #
13
- # The above copyright notice and this permission notice shall be included in
14
- # all copies or substantial portions of the Software.
15
- #
16
- # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
17
- # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
18
- # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
19
- # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
20
- # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
21
- # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
22
- # THE SOFTWARE.
23
- #
24
- # ###########################################################################*/
25
-
26
- __authors__ = ["H. Payno"]
27
- __license__ = "MIT"
28
- __date__ = "09/11/2020"
29
-
30
-
31
- import pytest
32
- from silx.gui import qt
33
- from silx.gui.utils.testutils import SignalListener, TestCaseQt
34
-
35
- from tomwer.gui.control.datalistener import ConfigurationWidget
36
- from tomwer.tests.utils import skip_gui_test
37
-
38
-
39
- @pytest.mark.skipif(skip_gui_test(), reason="skip gui test")
40
- class TestProcessManager(TestCaseQt):
41
- """
42
- Simple test on behavior of the ProcessManager
43
- """
44
-
45
- def setUp(self):
46
- TestCaseQt.setUp(self)
47
- self._configWidget = ConfigurationWidget(parent=None)
48
- self.sig_listener = SignalListener()
49
- self._configWidget.sigConfigurationChanged.connect(self.sig_listener)
50
- self._configWidget.setHost("localhost")
51
-
52
- def tearDown(self):
53
- self._configWidget.setAttribute(qt.Qt.WA_DeleteOnClose)
54
- self._configWidget.close()
55
- self._configWidget = None
56
-
57
- def testConfiguration(self):
58
- self.assertEqual(
59
- self._configWidget.getConfiguration(), {"host": "localhost", "port": 4000}
60
- )
61
- self._configWidget.setPort(0)
62
- self._configWidget.setHost("toto")
63
- self.assertEqual(
64
- self._configWidget.getConfiguration(), {"host": "toto", "port": 0}
65
- )
@@ -1,67 +0,0 @@
1
- # coding: utf-8
2
- # /*##########################################################################
3
- # Copyright (C) 2016 European Synchrotron Radiation Facility
4
- #
5
- # Permission is hereby granted, free of charge, to any person obtaining a copy
6
- # of this software and associated documentation files (the "Software"), to deal
7
- # in the Software without restriction, including without limitation the rights
8
- # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
9
- # copies of the Software, and to permit persons to whom the Software is
10
- # furnished to do so, subject to the following conditions:
11
- #
12
- # The above copyright notice and this permission notice shall be included in
13
- # all copies or substantial portions of the Software.
14
- #
15
- # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
16
- # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
17
- # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
18
- # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
19
- # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
20
- # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
21
- # THE SOFTWARE.
22
- #
23
- #############################################################################*/
24
-
25
- __authors__ = ["H. Payno"]
26
- __license__ = "MIT"
27
- __date__ = "22/01/2017"
28
-
29
-
30
- import shutil
31
- import tempfile
32
-
33
- import pytest
34
- from silx.gui.utils.testutils import TestCaseQt
35
-
36
- from tomwer.core.utils.scanutils import MockEDF
37
- from tomwer.gui.control.scanselectorwidget import ScanSelectorWidget
38
- from tomwer.tests.utils import skip_gui_test
39
-
40
-
41
- @pytest.mark.skipif(skip_gui_test(), reason="skip gui test")
42
- class TestScanSelector(TestCaseQt):
43
- """
44
- Simple test for the ScanSelectorWidget
45
- """
46
-
47
- def setUp(self):
48
- self._folder1 = tempfile.mkdtemp()
49
- self._folder2 = tempfile.mkdtemp()
50
- self._folder3 = tempfile.mkdtemp()
51
- for _folder in (self._folder1, self._folder2, self._folder3):
52
- MockEDF.mockScan(scanID=_folder, nRadio=5, nRecons=5, nPagRecons=0, dim=10)
53
-
54
- self.widget = ScanSelectorWidget(parent=None)
55
-
56
- def tearDown(self):
57
- shutil.rmtree(self._folder1)
58
- shutil.rmtree(self._folder2)
59
- shutil.rmtree(self._folder3)
60
-
61
- def test(self):
62
- self.widget.add(self._folder1)
63
- self.widget.add(self._folder2)
64
- self.widget.add(self._folder3)
65
- self.assertEqual(self.widget.dataList.n_data(), 3)
66
- self.widget.remove(self._folder3)
67
- self.assertEqual(self.widget.dataList.n_data(), 2)
@@ -1,28 +0,0 @@
1
- # coding: utf-8
2
- # /*##########################################################################
3
- #
4
- # Copyright (c) 2017 European Synchrotron Radiation Facility
5
- #
6
- # Permission is hereby granted, free of charge, to any person obtaining a copy
7
- # of this software and associated documentation files (the "Software"), to deal
8
- # in the Software without restriction, including without limitation the rights
9
- # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
10
- # copies of the Software, and to permit persons to whom the Software is
11
- # furnished to do so, subject to the following conditions:
12
- #
13
- # The above copyright notice and this permission notice shall be included in
14
- # all copies or substantial portions of the Software.
15
- #
16
- # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
17
- # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
18
- # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
19
- # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
20
- # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
21
- # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
22
- # THE SOFTWARE.
23
- #
24
- # ###########################################################################*/
25
-
26
- __authors__ = ["H.Payno"]
27
- __license__ = "MIT"
28
- __date__ = "29/05/2017"
@@ -1,214 +0,0 @@
1
- import os
2
- from silx.gui import qt
3
- from silx.utils.enum import Enum as _Enum
4
- from tomwer.core.process.icat.gallery import OutputFormat
5
- from tomwer.gui.qlefilesystem import QLFileSystem
6
- from tomwer.io.utils import get_default_directory
7
- from tomwer.core.utils.dictutils import concatenate_dict
8
- from tomwer.core.process.icat.gallery import Binning
9
-
10
- from .publish import PublishProcessedDataWidget
11
-
12
-
13
- class _GalleryOutputDir(qt.QGroupBox):
14
- class OutputDirMode(_Enum):
15
- DATASET_GALLERY = "dataset gallery"
16
- PROPOSAL_GALLERY = "proposal GALLERY"
17
- CUSTOM = "custom"
18
-
19
- def __init__(self, parent=None):
20
- super().__init__(parent)
21
- self.setLayout(qt.QGridLayout())
22
- # dataset gallery option
23
- self._datasetGalleryQRB = qt.QRadioButton(
24
- self.OutputDirMode.DATASET_GALLERY.value, self
25
- )
26
- self.layout().addWidget(self._datasetGalleryQRB, 0, 0, 1, 4)
27
- # proposal gallery option
28
- self._proposalGalleryQRB = qt.QRadioButton(
29
- self.OutputDirMode.PROPOSAL_GALLERY.value, self
30
- )
31
- self.layout().addWidget(self._proposalGalleryQRB, 1, 0, 1, 4)
32
-
33
- # other option
34
- self._otherQRB = qt.QRadioButton(self.OutputDirMode.CUSTOM.value, self)
35
- self._otherQRB.setCheckable(True)
36
- self.layout().addWidget(self._otherQRB, 2, 0, 1, 4)
37
-
38
- self._otherQLE = QLFileSystem(
39
- "", self, filters=qt.QDir.NoDotAndDotDot | qt.QDir.Dirs
40
- )
41
- self.layout().addWidget(self._otherQLE, 3, 1, 1, 2)
42
- style = qt.QApplication.style()
43
- icon_opendir = style.standardIcon(qt.QStyle.SP_DirOpenIcon)
44
- self._selectOtherQLE = qt.QPushButton(icon_opendir, "", self)
45
- self._selectOtherQLE.setIcon(icon_opendir)
46
- self.layout().addWidget(self._selectOtherQLE, 3, 3, 1, 1)
47
-
48
- # button group
49
- self._buttonGroup = qt.QButtonGroup()
50
- self._buttonGroup.setExclusive(True)
51
- self._buttonGroup.addButton(self._datasetGalleryQRB)
52
- self._buttonGroup.addButton(self._proposalGalleryQRB)
53
- self._buttonGroup.addButton(self._otherQRB)
54
-
55
- # vertical spacer
56
- self._vSpacer = qt.QWidget(self)
57
- self._vSpacer.setSizePolicy(qt.QSizePolicy.Minimum, qt.QSizePolicy.Expanding)
58
- self.layout().addWidget(self._vSpacer, 99, 0, 1, 1)
59
-
60
- # set up GUI
61
- self._datasetGalleryQRB.setChecked(True)
62
- self._modeChanged()
63
-
64
- # connect signal / slot
65
- self._buttonGroup.buttonClicked.connect(self._modeChanged)
66
- self._selectOtherQLE.released.connect(self._selectOutput)
67
-
68
- def _selectOutput(self): # pragma: no cover
69
- defaultDirectory = self._selectOtherQLE.text()
70
- if not os.path.isdir(defaultDirectory):
71
- defaultDirectory = get_default_directory()
72
-
73
- dialog = qt.QFileDialog(self, directory=defaultDirectory)
74
- dialog.setFileMode(qt.QFileDialog.DirectoryOnly)
75
-
76
- if not dialog.exec_():
77
- dialog.close()
78
- return
79
-
80
- self._selectOtherQLE.setText(dialog.selectedFiles()[0])
81
-
82
- def getOutputFolderMode(self):
83
- if self._datasetGalleryQRB.isChecked():
84
- return _GalleryOutputDir.OutputDirMode.DATASET_GALLERY
85
- elif self._proposalGalleryQRB.isChecked():
86
- return _GalleryOutputDir.OutputDirMode.PROPOSAL_GALLERY
87
- elif self._otherQRB.isChecked():
88
- return _GalleryOutputDir.OutputDirMode.CUSTOM
89
- else:
90
- raise NotImplementedError
91
-
92
- def setOutputFolderMode(self, mode):
93
- mode = _GalleryOutputDir.OutputDirMode.from_value(mode)
94
- if mode is _GalleryOutputDir.OutputDirMode.PROPOSAL_GALLERY:
95
- self._proposalGalleryQRB.setChecked(True)
96
- elif mode is _GalleryOutputDir.OutputDirMode.DATASET_GALLERY:
97
- self._datasetGalleryQRB.setChecked(True)
98
- elif mode is _GalleryOutputDir.OutputDirMode.CUSTOM:
99
- self._otherQRB.setChecked(True)
100
- else:
101
- raise NotImplementedError
102
- self._modeChanged()
103
-
104
- def getOtherOutputDir(self):
105
- return self._otherQLE.text()
106
-
107
- def setOtherOutputDir(self, path: str):
108
- self._otherQLE.setText(path)
109
-
110
- def _modeChanged(self, *args, **kwargs):
111
- custom_active = self._otherQRB.isChecked()
112
- self._otherQLE.setEnabled(custom_active)
113
- self._selectOtherQLE.setEnabled(custom_active)
114
-
115
-
116
- class GalleryWidget(qt.QWidget):
117
- """Widget to let the user define the output location of the screenshots"""
118
-
119
- sigConfigChanged = qt.Signal()
120
- """emit when the configuration has changed"""
121
-
122
- def __init__(self, parent=None):
123
- super().__init__(parent)
124
- self.setLayout(qt.QFormLayout())
125
-
126
- # screenshot precision
127
- self._precisonQCB = qt.QComboBox(self)
128
- self._precisonQCB.addItem("uint8")
129
- self.layout().addRow("precision", self._precisonQCB)
130
- # binning
131
- self._binningQCB = qt.QComboBox(self)
132
- self._binningQCB.addItems(Binning.values())
133
- self.layout().addRow("binning", self._binningQCB)
134
- self._binningQCB.setCurrentText(Binning.SIXTEEN_BY_SIXTEEN.value)
135
- self._binningQCB.setToolTip(
136
- "To speed up display of the gallery at the data portal side it is highly recommended to bin screenshots"
137
- ) # recommanded size: 5ko for the entire gallery
138
- # output format
139
- self._outputFormat = qt.QComboBox(self)
140
- self._outputFormat.addItems(OutputFormat.values())
141
- self.layout().addRow("outoutput_location_modeput format", self._outputFormat)
142
- # gallery output dir
143
- self._outputDirWidget = _GalleryOutputDir(self)
144
- self._outputLocationLabel = qt.QLabel("output location", self)
145
- self.layout().addRow(self._outputLocationLabel, self._outputDirWidget)
146
- self._outputDirWidget.hide()
147
- self._outputLocationLabel.hide()
148
- # overwrite
149
- self._overwriteCB = qt.QCheckBox("overwrite", self)
150
- self._overwriteCB.setChecked(True)
151
- self.layout().addRow(self._overwriteCB)
152
- # publishing setting
153
- self._publishConfig = PublishProcessedDataWidget(self)
154
- self._publisherGB = qt.QGroupBox("icat info")
155
- self._publisherGB.setLayout(qt.QVBoxLayout())
156
- self._publisherGB.layout().addWidget(self._publishConfig)
157
- self.layout().addRow(self._publisherGB)
158
- # connect signal / slot
159
- self._outputFormat.currentIndexChanged.connect(self._configChanged)
160
- self._overwriteCB.toggled.connect(self._configChanged)
161
- self._publishConfig.sigConfigChanged.connect(self.sigConfigChanged)
162
- self._binningQCB.currentIndexChanged.connect(self._configChanged)
163
-
164
- def getOutputFormat(self) -> OutputFormat:
165
- return OutputFormat.from_value(self._outputFormat.currentText())
166
-
167
- def setOutputFormat(self, format: OutputFormat):
168
- format = OutputFormat.from_value(format)
169
- self._outputFormat.setCurrentText(format.value)
170
-
171
- def getBinning(self) -> Binning:
172
- return Binning.from_value(self._binningQCB.currentText())
173
-
174
- def setBinning(self, binning: Binning):
175
- binning = Binning.from_value(binning)
176
- self._binningQCB.setCurrentText(binning.value)
177
-
178
- def getConfiguration(self):
179
- return concatenate_dict(
180
- self._publishConfig.getConfiguration(),
181
- {
182
- "output_format": self.getOutputFormat().value,
183
- "output_location_mode": self._outputDirWidget.getOutputFolderMode().value,
184
- "custom_output": self._outputDirWidget.getOtherOutputDir(),
185
- "overwrite": self._overwriteCB.isChecked(),
186
- "binning": self.getBinning().value,
187
- },
188
- )
189
-
190
- def setConfiguration(self, config: dict):
191
- self._publishConfig.setConfiguration(config)
192
- output_format = config.get("output_format", None)
193
- if output_format is not None:
194
- self.setOutputFormat(output_format)
195
-
196
- output_location_mode = config.get("output_location_mode", None)
197
- if output_location_mode is not None:
198
- self._outputDirWidget.setOutputFolderMode(output_location_mode)
199
-
200
- custom_output = config.get("custom_output", None)
201
- if custom_output is not None:
202
- self._outputDirWidget.setOtherOutputDir(custom_output)
203
-
204
- overwrite = config.get("overwrite", None)
205
- if overwrite is not None:
206
- overwrite = overwrite in (True, "True", 1)
207
- self._overwriteCB.setChecked(overwrite)
208
-
209
- binning = config.get("binning", None)
210
- if binning is not None:
211
- self.setBinning(binning=binning)
212
-
213
- def _configChanged(self, *args, **kwargs):
214
- self.sigConfigChanged.emit()