tomwer 1.3.27__py3-none-any.whl → 1.4.0rc0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- orangecontrib/tomwer/orange/managedprocess.py +1 -29
- orangecontrib/tomwer/orange/settings.py +2 -28
- orangecontrib/tomwer/tests/TestAcquisition.py +220 -0
- orangecontrib/tomwer/tutorials/append_raw_darks_and_flats_frames_to_NXtomos.ows +2 -2
- orangecontrib/tomwer/tutorials/copy_reduced_darks_and_flats_meth1.ows +1 -1
- orangecontrib/tomwer/tutorials/{icat_publication.ows → drac_publication.ows} +7 -21
- orangecontrib/tomwer/tutorials/id16b/ID16b_full_volume.ows +22 -0
- orangecontrib/tomwer/tutorials/id16b/ID16b_insitu.ows +302 -0
- orangecontrib/tomwer/tutorials/id16b/ID16b_normalization.ows +218 -0
- orangecontrib/tomwer/tutorials/simple_volume_to_slurm_reconstruction.ows +29 -24
- orangecontrib/tomwer/tutorials/test_cor.ows +19 -0
- orangecontrib/tomwer/tutorials/volume_casting_on_slurm.ows +54 -0
- orangecontrib/tomwer/widgets/__init__.py +3 -5
- orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py +35 -54
- orangecontrib/tomwer/widgets/cluster/SlurmClusterOW.py +1 -31
- orangecontrib/tomwer/widgets/control/AdvancementOW.py +1 -29
- orangecontrib/tomwer/widgets/control/DataDiscoveryOW.py +5 -4
- orangecontrib/tomwer/widgets/control/DataListenerOW.py +1 -29
- orangecontrib/tomwer/widgets/control/DataSelectorOW.py +11 -30
- orangecontrib/tomwer/widgets/control/DataTransfertOW.py +2 -28
- orangecontrib/tomwer/widgets/control/DataValidatorOW.py +1 -28
- orangecontrib/tomwer/widgets/control/DataWatcherOW.py +1 -28
- orangecontrib/tomwer/widgets/control/EDF2NXTomomillOW.py +48 -51
- orangecontrib/tomwer/widgets/control/EmailOW.py +12 -2
- orangecontrib/tomwer/widgets/control/FilterOW.py +1 -28
- orangecontrib/tomwer/widgets/control/NXTomomillOW.py +37 -53
- orangecontrib/tomwer/widgets/control/NXtomoConcatenate.py +21 -20
- orangecontrib/tomwer/widgets/control/NotifierOW.py +9 -28
- orangecontrib/tomwer/widgets/control/ReduceDarkFlatSelectorOW.py +3 -2
- orangecontrib/tomwer/widgets/control/SingleTomoObjOW.py +1 -27
- orangecontrib/tomwer/widgets/control/TimerOW.py +9 -28
- orangecontrib/tomwer/widgets/control/TomoObjSeriesOW.py +58 -0
- orangecontrib/tomwer/widgets/control/VolumeSelector.py +8 -30
- orangecontrib/tomwer/widgets/control/icons/nxtomomill.svg +173 -119
- orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.png +0 -0
- orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.svg +55 -195
- orangecontrib/tomwer/widgets/control/icons/{tomoobjserie.svg → tomoobjseries.svg} +2 -2
- orangecontrib/tomwer/widgets/dataportal/PublishProcessedDataOW.py +172 -0
- orangecontrib/tomwer/widgets/{icat → dataportal}/__init__.py +2 -2
- orangecontrib/tomwer/widgets/debugtools/DatasetGeneratorOW.py +2 -29
- orangecontrib/tomwer/widgets/debugtools/ObjectInspectorOW.py +1 -29
- orangecontrib/tomwer/widgets/edit/DarkFlatPatchOW.py +48 -73
- orangecontrib/tomwer/widgets/edit/ImageKeyEditorOW.py +48 -75
- orangecontrib/tomwer/widgets/edit/ImageKeyUpgraderOW.py +5 -30
- orangecontrib/tomwer/widgets/edit/NXtomoEditorOW.py +51 -52
- orangecontrib/tomwer/widgets/other/PythonScriptOW.py +22 -10
- orangecontrib/tomwer/widgets/reconstruction/AxisOW.py +48 -49
- orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py +22 -68
- orangecontrib/tomwer/widgets/reconstruction/DarkRefAndCopyOW.py +3 -30
- orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py +21 -19
- orangecontrib/tomwer/widgets/reconstruction/NabuOW.py +7 -70
- orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py +40 -85
- orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py +15 -40
- orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py +13 -35
- orangecontrib/tomwer/widgets/reconstruction/SinoNormOW.py +2 -30
- orangecontrib/tomwer/widgets/stitching/ZStitchingConfigOW.py +11 -11
- orangecontrib/tomwer/widgets/utils.py +2 -29
- orangecontrib/tomwer/widgets/visualization/DataViewerOW.py +1 -27
- orangecontrib/tomwer/widgets/visualization/DiffViewerOW.py +1 -27
- orangecontrib/tomwer/widgets/visualization/NXtomoMetadataViewerOW.py +1 -1
- orangecontrib/tomwer/widgets/visualization/RadioStackOW.py +2 -28
- orangecontrib/tomwer/widgets/visualization/SampleMovedOW.py +1 -27
- orangecontrib/tomwer/widgets/visualization/SinogramViewerOW.py +1 -27
- orangecontrib/tomwer/widgets/visualization/SliceStackOW.py +2 -28
- tomwer/__init__.py +3 -28
- tomwer/__main__.py +8 -4
- tomwer/app/__init__.py +2 -0
- tomwer/app/axis.py +8 -7
- tomwer/app/canvas.py +23 -29
- tomwer/app/canvas_launcher/config.py +14 -102
- tomwer/app/canvas_launcher/environ.py +5 -8
- tomwer/app/canvas_launcher/mainwindow.py +175 -69
- tomwer/app/canvas_launcher/splash.py +1 -3
- tomwer/app/canvas_launcher/utils.py +47 -0
- tomwer/app/canvas_launcher/widgetsscheme.py +3 -10
- tomwer/app/diffframe.py +2 -0
- tomwer/app/imagekeyeditor.py +2 -1
- tomwer/app/imagekeyupgrader.py +2 -0
- tomwer/app/multicor.py +5 -2
- tomwer/app/multipag.py +7 -4
- tomwer/app/nabuapp.py +2 -1
- tomwer/app/nxtomoeditor.py +17 -12
- tomwer/app/patchrawdarkflat.py +2 -0
- tomwer/app/radiostack.py +3 -2
- tomwer/app/reducedarkflat.py +3 -0
- tomwer/app/samplemoved.py +2 -0
- tomwer/app/scanviewer.py +2 -0
- tomwer/app/sinogramviewer.py +2 -0
- tomwer/app/slicestack.py +11 -13
- tomwer/app/stitching/common.py +431 -0
- tomwer/app/stopdatalistener.py +3 -0
- tomwer/app/ystitching.py +26 -0
- tomwer/app/zstitching.py +8 -363
- tomwer/core/__init__.py +2 -28
- tomwer/core/cluster/__init__.py +3 -0
- tomwer/core/cluster/cluster.py +10 -26
- tomwer/core/futureobject.py +17 -43
- tomwer/core/log/__init__.py +2 -0
- tomwer/core/log/processlog.py +0 -28
- tomwer/core/process/cluster/supervisor.py +52 -34
- tomwer/core/process/conditions/filters.py +3 -28
- tomwer/core/process/control/datalistener/datalistener.py +7 -75
- tomwer/core/process/control/datalistener/rpcserver.py +8 -38
- tomwer/core/process/control/datawatcher/datawatcher.py +11 -40
- tomwer/core/process/control/datawatcher/datawatcherobserver.py +30 -64
- tomwer/core/process/control/datawatcher/datawatcherprocess.py +11 -32
- tomwer/core/process/control/datawatcher/edfdwprocess.py +2 -27
- tomwer/core/process/control/datawatcher/hdf5dwprocess.py +1 -26
- tomwer/core/process/control/datawatcher/status.py +1 -26
- tomwer/core/process/control/emailnotifier.py +11 -23
- tomwer/core/process/control/nxtomoconcatenate.py +20 -18
- tomwer/core/process/control/nxtomomill.py +9 -44
- tomwer/core/process/control/scanlist.py +0 -27
- tomwer/core/process/control/scantransfer.py +15 -13
- tomwer/core/process/control/scanvalidator.py +4 -30
- tomwer/core/process/control/{test → tests}/test_concatenate_nxtomos.py +5 -5
- tomwer/core/process/control/timer.py +1 -27
- tomwer/core/process/control/tomoobjseries.py +12 -0
- tomwer/core/process/drac/binning.py +37 -0
- tomwer/core/process/drac/dracbase.py +170 -0
- tomwer/core/process/drac/gallery.py +109 -0
- tomwer/core/process/drac/output.py +12 -0
- tomwer/core/process/drac/processeddataset.py +147 -0
- tomwer/core/process/drac/publish.py +118 -0
- tomwer/core/process/drac/rawdataset.py +142 -0
- tomwer/core/process/drac/tests/test_gallery.py +71 -0
- tomwer/core/process/drac/tests/test_icat_processed_dataset.py +80 -0
- tomwer/core/process/drac/tests/test_icat_raw_dataset.py +90 -0
- tomwer/core/process/edit/darkflatpatch.py +1 -28
- tomwer/core/process/edit/imagekeyeditor.py +4 -32
- tomwer/core/process/edit/nxtomoeditor.py +307 -0
- tomwer/core/process/edit/tests/test_darkflatpatch.py +243 -0
- tomwer/core/process/edit/tests/test_imagekey_editor.py +99 -0
- tomwer/core/process/output.py +9 -2
- tomwer/core/process/reconstruction/__init__.py +0 -26
- tomwer/core/process/reconstruction/axis/anglemode.py +1 -29
- tomwer/core/process/reconstruction/axis/axis.py +63 -111
- tomwer/core/process/reconstruction/axis/mode.py +5 -3
- tomwer/core/process/reconstruction/axis/params.py +5 -146
- tomwer/core/process/reconstruction/axis/projectiontype.py +0 -28
- tomwer/core/process/reconstruction/darkref/darkrefs.py +14 -39
- tomwer/core/process/reconstruction/darkref/darkrefscopy.py +7 -39
- tomwer/core/process/reconstruction/darkref/params.py +1 -28
- tomwer/core/process/reconstruction/nabu/castvolume.py +19 -34
- tomwer/core/process/reconstruction/nabu/nabucommon.py +18 -43
- tomwer/core/process/reconstruction/nabu/nabuscores.py +47 -48
- tomwer/core/process/reconstruction/nabu/nabuslices.py +59 -105
- tomwer/core/process/reconstruction/nabu/nabuvolume.py +44 -70
- tomwer/core/process/reconstruction/nabu/plane.py +10 -0
- tomwer/core/process/reconstruction/nabu/settings.py +1 -28
- tomwer/core/process/reconstruction/nabu/target.py +0 -28
- tomwer/core/process/reconstruction/nabu/test/test_castvolume.py +116 -0
- tomwer/core/process/reconstruction/nabu/test/test_nabu_utils.py +277 -0
- tomwer/core/process/reconstruction/nabu/test/test_nabunormalization.py +199 -0
- tomwer/core/process/reconstruction/nabu/utils.py +11 -60
- tomwer/core/process/reconstruction/normalization/normalization.py +2 -32
- tomwer/core/process/reconstruction/normalization/params.py +3 -35
- tomwer/core/process/reconstruction/output.py +14 -19
- tomwer/core/process/reconstruction/paramsbase.py +4 -33
- tomwer/core/process/reconstruction/saaxis/params.py +5 -33
- tomwer/core/process/reconstruction/saaxis/saaxis.py +18 -47
- tomwer/core/process/reconstruction/sadeltabeta/params.py +2 -31
- tomwer/core/process/reconstruction/sadeltabeta/sadeltabeta.py +16 -44
- tomwer/core/process/reconstruction/scores/params.py +9 -39
- tomwer/core/process/reconstruction/scores/scores.py +10 -42
- tomwer/core/process/reconstruction/tests/__init__.py +0 -0
- tomwer/core/process/reconstruction/tests/test_axis.py +46 -0
- tomwer/core/process/reconstruction/tests/test_darkref.py +33 -0
- tomwer/core/process/reconstruction/{test → tests}/test_saaxis.py +1 -27
- tomwer/core/process/reconstruction/tests/test_sadeltabeta.py +48 -0
- tomwer/core/process/script/python.py +1 -27
- tomwer/core/process/script/tests/test_script.py +41 -0
- tomwer/core/process/stitching/metadataholder.py +5 -4
- tomwer/core/process/stitching/nabustitcher.py +35 -5
- tomwer/core/process/stitching/tests/test_metadataholder.py +17 -0
- tomwer/core/process/task.py +20 -63
- tomwer/core/process/tests/__init__.py +0 -0
- tomwer/core/process/{test → tests}/test_axis.py +1 -79
- tomwer/core/process/{test → tests}/test_conditions.py +1 -28
- tomwer/core/process/{test → tests}/test_dark_and_flat.py +1 -27
- tomwer/core/process/{test → tests}/test_data_listener.py +1 -27
- tomwer/core/process/{test → tests}/test_data_transfer.py +2 -28
- tomwer/core/process/{test → tests}/test_data_watcher.py +1 -27
- tomwer/core/process/{test → tests}/test_nabu.py +4 -33
- tomwer/core/process/{test → tests}/test_normalization.py +1 -26
- tomwer/core/process/{test → tests}/test_timer.py +1 -27
- tomwer/core/process/utils.py +2 -31
- tomwer/core/process/visualization/dataviewer.py +1 -26
- tomwer/core/process/visualization/diffviewer.py +1 -26
- tomwer/core/process/visualization/imagestackviewer.py +0 -26
- tomwer/core/process/visualization/radiostack.py +0 -26
- tomwer/core/process/visualization/samplemoved.py +0 -28
- tomwer/core/process/visualization/sinogramviewer.py +0 -27
- tomwer/core/process/visualization/slicestack.py +0 -28
- tomwer/core/process/visualization/tests/test_data_viewer.py +12 -0
- tomwer/core/process/visualization/tests/test_diff_viewer.py +12 -0
- tomwer/core/process/visualization/tests/test_image_stack_viewer.py +14 -0
- tomwer/core/process/visualization/tests/test_radio_stack.py +12 -0
- tomwer/core/process/visualization/tests/test_sample_moved.py +14 -0
- tomwer/core/process/visualization/tests/test_sinogram_viewer.py +13 -0
- tomwer/core/process/visualization/tests/test_slice_stack.py +13 -0
- tomwer/core/process/visualization/tests/test_volume_viewer.py +12 -0
- tomwer/core/process/visualization/volumeviewer.py +0 -29
- tomwer/core/scan/__init__.py +3 -27
- tomwer/core/scan/blissscan.py +5 -34
- tomwer/core/scan/edfscan.py +19 -53
- tomwer/core/scan/hdf5scan.py +2 -2
- tomwer/core/scan/nxtomoscan.py +46 -54
- tomwer/core/scan/scanbase.py +104 -200
- tomwer/core/scan/scanfactory.py +11 -41
- tomwer/core/scan/tests/__init__.py +0 -0
- tomwer/core/scan/tests/test_edf.py +25 -0
- tomwer/core/scan/tests/test_future_scan.py +35 -0
- tomwer/core/scan/tests/test_nxtomoscan.py +143 -0
- tomwer/core/scan/{test → tests}/test_process_registration.py +1 -28
- tomwer/core/settings.py +18 -40
- tomwer/core/tests/__init__.py +0 -0
- tomwer/core/tests/test_scanutils.py +26 -0
- tomwer/core/{test → tests}/test_utils.py +1 -28
- tomwer/core/tomwer_object.py +4 -0
- tomwer/core/utils/__init__.py +2 -0
- tomwer/core/utils/char.py +0 -28
- tomwer/core/utils/deprecation.py +12 -38
- tomwer/core/utils/dictutils.py +1 -3
- tomwer/core/utils/ftseriesutils.py +1 -27
- tomwer/core/utils/gpu.py +0 -28
- tomwer/core/utils/image.py +8 -39
- tomwer/core/utils/locker.py +1 -28
- tomwer/core/utils/logconfig.py +0 -27
- tomwer/core/utils/normalization.py +4 -31
- tomwer/core/utils/nxtomoutils.py +8 -38
- tomwer/core/utils/resource.py +0 -26
- tomwer/core/utils/scanutils.py +23 -52
- tomwer/core/utils/slurm.py +7 -30
- tomwer/core/utils/spec.py +6 -6
- tomwer/core/utils/tests/__init__.py +0 -0
- tomwer/core/utils/tests/test_image.py +30 -0
- tomwer/core/utils/tests/test_nxtomo.py +38 -0
- tomwer/core/utils/tests/test_scan_utils.py +46 -0
- tomwer/core/utils/tests/test_time.py +6 -0
- tomwer/core/utils/threads.py +0 -26
- tomwer/core/utils/time.py +0 -27
- tomwer/core/volume/__init__.py +4 -0
- tomwer/core/volume/edfvolume.py +1 -28
- tomwer/core/volume/hdf5volume.py +1 -28
- tomwer/core/volume/jp2kvolume.py +1 -27
- tomwer/core/volume/rawvolume.py +1 -28
- tomwer/core/volume/tests/test_volumes.py +21 -0
- tomwer/core/volume/tiffvolume.py +1 -28
- tomwer/core/volume/volumebase.py +5 -0
- tomwer/core/volume/volumefactory.py +7 -33
- tomwer/gui/__init__.py +0 -28
- tomwer/gui/cluster/__init__.py +2 -0
- tomwer/gui/cluster/slurm.py +297 -95
- tomwer/gui/cluster/supervisor.py +1 -27
- tomwer/gui/cluster/tests/__init__.py +0 -0
- tomwer/gui/cluster/{test → tests}/test_cluster.py +21 -26
- tomwer/gui/cluster/{test → tests}/test_supervisor.py +1 -27
- tomwer/gui/conditions/__init__.py +2 -0
- tomwer/gui/conditions/filter.py +1 -26
- tomwer/gui/configuration/__init__.py +2 -0
- tomwer/gui/control/__init__.py +2 -0
- tomwer/gui/control/actions.py +2 -28
- tomwer/gui/control/datadiscovery.py +4 -3
- tomwer/gui/control/datalist.py +64 -69
- tomwer/gui/control/datalistener.py +1 -39
- tomwer/gui/control/datareacheractions.py +1 -28
- tomwer/gui/control/datatransfert.py +2 -29
- tomwer/gui/control/datavalidator.py +3 -37
- tomwer/gui/control/datawatcher/__init__.py +0 -28
- tomwer/gui/control/datawatcher/configuration.py +1 -28
- tomwer/gui/control/datawatcher/datawatcher.py +3 -32
- tomwer/gui/control/datawatcher/datawatcherobserver.py +2 -28
- tomwer/gui/control/history.py +5 -35
- tomwer/gui/control/nxtomomill.py +3 -30
- tomwer/gui/control/observations.py +61 -55
- tomwer/gui/control/reducedarkflatselector.py +24 -20
- tomwer/gui/control/scanselectorwidget.py +2 -28
- tomwer/gui/control/selectorwidgetbase.py +17 -17
- tomwer/gui/control/series/__init__.py +0 -0
- tomwer/gui/control/{serie/seriecreator.py → series/seriescreator.py} +214 -235
- tomwer/gui/control/series/serieswaiter.py +0 -0
- tomwer/gui/control/series/test/test_creator.py +424 -0
- tomwer/gui/control/series/test/test_nxtomo_concatenate.py +21 -0
- tomwer/gui/control/singletomoobj.py +1 -1
- tomwer/gui/control/tests/__init__.py +0 -0
- tomwer/gui/control/tests/test_datalist.py +47 -0
- tomwer/gui/control/{test → tests}/test_datalistener.py +1 -28
- tomwer/gui/control/tests/test_datavalidator.py +27 -0
- tomwer/gui/control/{test → tests}/test_inputwidget.py +1 -27
- tomwer/gui/control/tests/test_process_manager.py +38 -0
- tomwer/gui/control/tests/test_scan_observations.py +23 -0
- tomwer/gui/control/tests/test_scanselector.py +42 -0
- tomwer/gui/control/{test → tests}/test_scanvalidator.py +1 -27
- tomwer/gui/control/{test → tests}/test_volume_dialog.py +2 -30
- tomwer/gui/control/{test → tests}/test_volumeselector.py +1 -27
- tomwer/gui/control/volumeselectorwidget.py +2 -30
- tomwer/gui/dataportal/__init__.py +2 -0
- tomwer/gui/{icat → dataportal}/createscreenshots.py +3 -2
- tomwer/gui/dataportal/gallery.py +133 -0
- tomwer/gui/dataportal/outputformat.py +0 -0
- tomwer/gui/dataportal/publish.py +96 -0
- tomwer/gui/dataportal/tests/test_create_screenshots_gui.py +23 -0
- tomwer/gui/dataportal/tests/test_gallery_gui.py +21 -0
- tomwer/gui/debugtools/__init__.py +2 -0
- tomwer/gui/debugtools/datasetgenerator.py +1 -30
- tomwer/gui/debugtools/objectinspector.py +1 -29
- tomwer/gui/dialog/QDataDialog.py +89 -0
- tomwer/gui/{qfolderdialog.py → dialog/QVolumeDialog.py} +8 -107
- tomwer/gui/dialog/__init__.py +1 -0
- tomwer/gui/edit/__init__.py +2 -0
- tomwer/gui/edit/dkrfpatch.py +52 -87
- tomwer/gui/edit/imagekeyeditor.py +18 -54
- tomwer/gui/edit/nxtomoeditor.py +113 -300
- tomwer/gui/edit/nxtomowarmer.py +3 -2
- tomwer/gui/edit/tests/__init__.py +0 -0
- tomwer/gui/edit/{test → tests}/test_dkrf_patch.py +3 -29
- tomwer/gui/edit/{test → tests}/test_image_key_editor.py +1 -27
- tomwer/gui/edit/{test → tests}/test_nx_editor.py +45 -23
- tomwer/gui/icons.py +28 -66
- tomwer/gui/illustrations.py +4 -34
- tomwer/gui/imagefromfile.py +5 -30
- tomwer/gui/metadataloader.py +36 -0
- tomwer/gui/qconfigfile.py +3 -0
- tomwer/gui/qlefilesystem.py +3 -0
- tomwer/gui/reconstruction/__init__.py +2 -0
- tomwer/gui/reconstruction/axis/AxisMainWindow.py +264 -0
- tomwer/gui/reconstruction/axis/AxisOptionsWidget.py +153 -0
- tomwer/gui/reconstruction/axis/AxisSettingsWidget.py +776 -0
- tomwer/gui/reconstruction/axis/AxisWidget.py +526 -0
- tomwer/gui/reconstruction/axis/CalculationWidget.py +374 -0
- tomwer/gui/reconstruction/axis/CompareImages.py +11 -44
- tomwer/gui/reconstruction/axis/ControlWidget.py +277 -0
- tomwer/gui/reconstruction/axis/InputWidget.py +491 -0
- tomwer/gui/reconstruction/axis/ManualFramesSelection.py +168 -0
- tomwer/gui/reconstruction/axis/__init__.py +2 -2
- tomwer/gui/reconstruction/darkref/__init__.py +0 -27
- tomwer/gui/reconstruction/darkref/darkrefcopywidget.py +5 -34
- tomwer/gui/reconstruction/darkref/darkrefwidget.py +1 -27
- tomwer/gui/reconstruction/nabu/castvolume.py +40 -59
- tomwer/gui/reconstruction/nabu/check.py +7 -33
- tomwer/gui/reconstruction/nabu/nabuconfig/base.py +7 -34
- tomwer/gui/reconstruction/nabu/nabuconfig/ctf.py +6 -5
- tomwer/gui/reconstruction/nabu/nabuconfig/nabuconfig.py +10 -69
- tomwer/gui/reconstruction/nabu/nabuconfig/output.py +3 -47
- tomwer/gui/reconstruction/nabu/nabuconfig/phase.py +54 -36
- tomwer/gui/reconstruction/nabu/nabuconfig/preprocessing.py +103 -54
- tomwer/gui/reconstruction/nabu/nabuconfig/reconstruction.py +116 -65
- tomwer/gui/reconstruction/nabu/nabuflow.py +31 -61
- tomwer/gui/reconstruction/nabu/platform.py +94 -0
- tomwer/gui/reconstruction/nabu/slices.py +81 -45
- tomwer/gui/reconstruction/nabu/slurm.py +1 -27
- tomwer/gui/reconstruction/nabu/test/test_cast_volume.py +82 -0
- tomwer/gui/reconstruction/nabu/test/test_check.py +66 -0
- tomwer/gui/reconstruction/nabu/test/test_ctf.py +46 -0
- tomwer/gui/reconstruction/nabu/test/test_helical.py +21 -0
- tomwer/gui/reconstruction/nabu/test/test_nabu_preprocessing.py +81 -0
- tomwer/gui/reconstruction/nabu/volume.py +62 -90
- tomwer/gui/reconstruction/normalization/intensity.py +5 -32
- tomwer/gui/reconstruction/normalization/test/test_intensity.py +89 -0
- tomwer/gui/reconstruction/saaxis/corrangeselector.py +16 -49
- tomwer/gui/reconstruction/saaxis/dimensionwidget.py +56 -96
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- tomwer/synctools/stacks/reconstruction/sadeltabeta.py +1 -26
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- orangecontrib/tomwer/widgets/edit/test/test_image_key_editor.py → tomwer/tests/orangecontrib/tomwer/widgets/debugtools/tests/test_dataset_generator.py +17 -16
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- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_sa_delta_beta.py +194 -0
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- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_dataviewerow.py +57 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_diffviewerow.py +39 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_nxtomo_metadata_viewer.py +29 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_radio_stackow.py +31 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_sample_movedow.py +46 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_sinogram_viewerow.py +31 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_slice_stackow.py +31 -0
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- tomwer/utils.py +11 -39
- tomwer/version.py +3 -3
- {tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/LICENSE +3 -3
- tomwer-1.4.0rc0.dist-info/METADATA +337 -0
- tomwer-1.4.0rc0.dist-info/RECORD +909 -0
- {tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/WHEEL +1 -1
- {tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/entry_points.txt +1 -0
- orangecontrib/tomwer/widgets/control/DataListOW.py +0 -129
- orangecontrib/tomwer/widgets/control/TomoObjSerieOW.py +0 -86
- orangecontrib/tomwer/widgets/control/VolumeSymLinkOW.py +0 -182
- orangecontrib/tomwer/widgets/edit/test/test_nxtomo_editor.py +0 -141
- orangecontrib/tomwer/widgets/icat/PublishProcessedDataOW.py +0 -115
- orangecontrib/tomwer/widgets/icat/RawDataScreenshotCreatorOW.py +0 -98
- orangecontrib/tomwer/widgets/icat/SaveToGalleryAndPublishOW.py +0 -129
- orangecontrib/tomwer/widgets/icat/icons/add_gallery.png +0 -0
- orangecontrib/tomwer/widgets/icat/icons/add_gallery.svg +0 -82
- orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.png +0 -0
- orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.svg +0 -143
- orangecontrib/tomwer/widgets/visualization/LivesliceOW.py +0 -87
- orangecontrib/tomwer/widgets/visualization/icons/liveslice.png +0 -0
- orangecontrib/tomwer/widgets/visualization/icons/liveslice.svg +0 -110
- tomwer/core/log/logger.py +0 -130
- tomwer/core/process/control/test/test_volume_link.py +0 -74
- tomwer/core/process/control/tomoobjserie.py +0 -12
- tomwer/core/process/control/volumesymlink.py +0 -200
- tomwer/core/process/icat/createscreenshots.py +0 -100
- tomwer/core/process/icat/gallery.py +0 -377
- tomwer/core/process/icat/icatbase.py +0 -36
- tomwer/core/process/icat/publish.py +0 -228
- tomwer/core/process/icat/screenshots.py +0 -27
- tomwer/core/process/reconstruction/test/test_darkref.py +0 -60
- tomwer/core/process/reconstruction/test/test_sadeltabeta.py +0 -74
- tomwer/core/process/visualization/liveslice.py +0 -6
- tomwer/core/progress.py +0 -100
- tomwer/core/scan/test/test_edf.py +0 -53
- tomwer/core/scan/test/test_future_scan.py +0 -61
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- tomwer/gui/control/emailnotifier.py +0 -174
- tomwer/gui/control/serie/seriewaiter.py +0 -28
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- tomwer/gui/control/test/test_datalist.py +0 -96
- tomwer/gui/control/test/test_datavalidator.py +0 -54
- tomwer/gui/control/test/test_email.py +0 -35
- tomwer/gui/control/test/test_process_manager.py +0 -65
- tomwer/gui/control/test/test_scanselector.py +0 -67
- tomwer/gui/edit/test/__init__.py +0 -28
- tomwer/gui/icat/gallery.py +0 -214
- tomwer/gui/icat/publish.py +0 -187
- tomwer/gui/reconstruction/axis/axis.py +0 -733
- tomwer/gui/reconstruction/axis/radioaxis.py +0 -2467
- tomwer/gui/stitching/stitching.py +0 -1388
- tomwer/gui/test/__init__.py +0 -28
- tomwer/gui/test/test_axis_gui.py +0 -34
- tomwer/synctools/stacks/edit/darkflatpatch.py +0 -169
- tomwer/synctools/stacks/edit/imagekeyeditor.py +0 -135
- tomwer/third_part/WaitingOverlay.py +0 -110
- tomwer-1.3.27-py3.11-nspkg.pth +0 -1
- tomwer-1.3.27.dist-info/METADATA +0 -292
- tomwer-1.3.27.dist-info/RECORD +0 -785
- tomwer-1.3.27.dist-info/namespace_packages.txt +0 -1
- /orangecontrib/tomwer/{widgets/edit/test → tests}/__init__.py +0 -0
- {tomwer/core/process/control/test → orangecontrib/tomwer/tutorials/id16b}/__init__.py +0 -0
- {tomwer/core/process/icat → orangecontrib/tomwer/widgets/cluster/tests}/__init__.py +0 -0
- /orangecontrib/tomwer/widgets/control/icons/{tomoobjserie.png → tomoobjseries.png} +0 -0
- {tomwer/core/process/reconstruction/test → orangecontrib/tomwer/widgets/control/tests}/__init__.py +0 -0
- /orangecontrib/tomwer/widgets/{icat → dataportal}/icons/publish_processed_data.png +0 -0
- /orangecontrib/tomwer/widgets/{icat → dataportal}/icons/publish_processed_data.svg +0 -0
- {tomwer/core/process/test → orangecontrib/tomwer/widgets/debugtools/tests}/__init__.py +0 -0
- {tomwer/core/scan/test → orangecontrib/tomwer/widgets/edit/tests}/__init__.py +0 -0
- {tomwer/core/test → orangecontrib/tomwer/widgets/other/tests}/__init__.py +0 -0
- {tomwer/gui/cluster/test → orangecontrib/tomwer/widgets/reconstruction/tests}/__init__.py +0 -0
- {tomwer/gui/control/serie → orangecontrib/tomwer/widgets/stitching/tests}/__init__.py +0 -0
- {tomwer/gui/icat → orangecontrib/tomwer/widgets/tests}/__init__.py +0 -0
- {tomwer/gui/reconstruction/test → orangecontrib/tomwer/widgets/visualization/tests}/__init__.py +0 -0
- /tomwer/{synctools/stacks/edit → app/stitching}/__init__.py +0 -0
- /tomwer/{synctools/test → core/process/control/tests}/__init__.py +0 -0
- /tomwer/core/process/control/{test → tests}/test_email.py +0 -0
- /tomwer/core/process/control/{test → tests}/test_h52nx_process.py +0 -0
- /tomwer/{third_part → core/process/drac}/__init__.py +0 -0
- /tomwer/core/process/reconstruction/{test → tests}/test_axis_params.py +0 -0
- /tomwer/core/process/reconstruction/{test → tests}/test_darkref_copy.py +0 -0
- /tomwer/core/process/reconstruction/{test → tests}/test_paramsbase.py +0 -0
- /tomwer/core/process/reconstruction/{test → tests}/test_utils.py +0 -0
- /tomwer/core/scan/{test → tests}/test_scan.py +0 -0
- /tomwer/gui/control/{serie → series}/nxtomoconcatenate.py +0 -0
- /tomwer/gui/control/{test → tests}/test_datadiscovery.py +0 -0
- /tomwer/gui/control/{test → tests}/test_reducedarkflat_selector.py +0 -0
- /tomwer/gui/control/{test → tests}/test_single_tomo_obj.py +0 -0
- {orangecontrib/tomwer/widgets/edit/test → tomwer/tests/orangecontrib/tomwer/widgets/edit/tests}/test_image_key_upgrader.py +0 -0
- {tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/top_level.txt +0 -0
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# coding: utf-8
|
2
|
-
# /*##########################################################################
|
3
|
-
#
|
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-
# Copyright (c) 2017 European Synchrotron Radiation Facility
|
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-
#
|
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# Permission is hereby granted, free of charge, to any person obtaining a copy
|
7
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-
# of this software and associated documentation files (the "Software"), to deal
|
8
|
-
# in the Software without restriction, including without limitation the rights
|
9
|
-
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
10
|
-
# copies of the Software, and to permit persons to whom the Software is
|
11
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-
# furnished to do so, subject to the following conditions:
|
12
|
-
#
|
13
|
-
# The above copyright notice and this permission notice shall be included in
|
14
|
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# all copies or substantial portions of the Software.
|
15
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-
#
|
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# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
17
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# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
18
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-
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
19
|
-
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
20
|
-
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
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-
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
|
22
|
-
# THE SOFTWARE.
|
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|
-
#
|
24
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# ###########################################################################*/
|
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__authors__ = ["H. Payno"]
|
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__license__ = "MIT"
|
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__date__ = "05/11/2018"
|
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|
30
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import tempfile
|
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|
32
|
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import pytest
|
33
|
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from silx.gui import qt
|
34
|
-
from silx.gui.utils.testutils import TestCaseQt
|
35
|
-
|
36
|
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from tomwer.core.utils.scanutils import MockEDF
|
37
|
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from tomwer.gui.control.datalist import GenericScanListDialog, VolumeList
|
38
|
-
from tomwer.tests.utils import skip_gui_test
|
39
|
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|
40
|
-
|
41
|
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@pytest.mark.skipif(skip_gui_test(), reason="skip gui test")
|
42
|
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class DataListTest(TestCaseQt):
|
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|
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"""Test that the datalist widget work correctly"""
|
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|
45
|
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def setUp(self):
|
46
|
-
super().setUp()
|
47
|
-
self.widget = GenericScanListDialog(parent=None)
|
48
|
-
self.widget._callbackRemoveAllFolders()
|
49
|
-
self.widget.clear()
|
50
|
-
self._folders = []
|
51
|
-
for iFolder in range(5):
|
52
|
-
self._folders.append(tempfile.mkdtemp())
|
53
|
-
MockEDF.mockScan(
|
54
|
-
scanID=self._folders[-1], nRadio=5, nRecons=5, nPagRecons=0, dim=10
|
55
|
-
)
|
56
|
-
|
57
|
-
def tearDown(self):
|
58
|
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self.widget.setAttribute(qt.Qt.WA_DeleteOnClose)
|
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self.widget.close()
|
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|
-
self.widget = None
|
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|
-
self._folders = None
|
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|
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super().tearDown()
|
63
|
-
|
64
|
-
def test(self):
|
65
|
-
"""simple test adding and removing folders"""
|
66
|
-
for _folder in self._folders:
|
67
|
-
self.widget.add(_folder)
|
68
|
-
self.assertEqual(self.widget.n_scan(), len(self._folders))
|
69
|
-
self.widget.remove(self._folders[0])
|
70
|
-
self.assertEqual(self.widget.n_scan(), len(self._folders) - 1)
|
71
|
-
self.assertTrue(self._folders[0] not in self.widget.datalist._myitems)
|
72
|
-
self.widget.selectAll()
|
73
|
-
self.widget._removeSelected()
|
74
|
-
self.assertEqual(self.widget.n_scan(), 0)
|
75
|
-
|
76
|
-
|
77
|
-
@pytest.mark.skipif(skip_gui_test(), reason="skip gui test")
|
78
|
-
def TestVolumeList(TestCaseQt):
|
79
|
-
"""Test VolumeList behave as expected"""
|
80
|
-
|
81
|
-
def setUp(self):
|
82
|
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super().setUp()
|
83
|
-
self.widget = VolumeList(parent=None)
|
84
|
-
self.folder = tempfile.mkdtemp()
|
85
|
-
|
86
|
-
def tearDown(self):
|
87
|
-
self.widget.setAttribute(qt.Qt.WA_DeleteOnClose)
|
88
|
-
self.widget.close()
|
89
|
-
self.widget = None
|
90
|
-
self.folder = None
|
91
|
-
super().tearDown()
|
92
|
-
|
93
|
-
def test(self):
|
94
|
-
raise NotImplementedError
|
95
|
-
self.widget.show()
|
96
|
-
self.qapp.exec_()
|
@@ -1,54 +0,0 @@
|
|
1
|
-
# coding: utf-8
|
2
|
-
# /*##########################################################################
|
3
|
-
# Copyright (C) 2016 European Synchrotron Radiation Facility
|
4
|
-
#
|
5
|
-
# Permission is hereby granted, free of charge, to any person obtaining a copy
|
6
|
-
# of this software and associated documentation files (the "Software"), to deal
|
7
|
-
# in the Software without restriction, including without limitation the rights
|
8
|
-
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
9
|
-
# copies of the Software, and to permit persons to whom the Software is
|
10
|
-
# furnished to do so, subject to the following conditions:
|
11
|
-
#
|
12
|
-
# The above copyright notice and this permission notice shall be included in
|
13
|
-
# all copies or substantial portions of the Software.
|
14
|
-
#
|
15
|
-
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
16
|
-
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
17
|
-
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
18
|
-
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
19
|
-
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
20
|
-
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
|
21
|
-
# THE SOFTWARE.
|
22
|
-
#
|
23
|
-
#############################################################################*/
|
24
|
-
|
25
|
-
|
26
|
-
__authors__ = ["H. Payno"]
|
27
|
-
__license__ = "MIT"
|
28
|
-
__date__ = "30/07/2020"
|
29
|
-
|
30
|
-
|
31
|
-
import unittest
|
32
|
-
|
33
|
-
from silx.gui import qt
|
34
|
-
from silx.gui.utils.testutils import TestCaseQt
|
35
|
-
|
36
|
-
from tomwer.gui.control.datavalidator import DataValidator
|
37
|
-
|
38
|
-
|
39
|
-
class TestValidatorGUI(TestCaseQt):
|
40
|
-
"""Test that the ImageStackWidget can be load and remove without any issue"""
|
41
|
-
|
42
|
-
def setUp(self):
|
43
|
-
TestCaseQt.setUp(self)
|
44
|
-
self._widget = DataValidator(None)
|
45
|
-
|
46
|
-
def tearDown(self):
|
47
|
-
self._widget.setAttribute(qt.Qt.WA_DeleteOnClose)
|
48
|
-
self._widget.close()
|
49
|
-
self._widget = None
|
50
|
-
unittest.TestCase.tearDown(self)
|
51
|
-
|
52
|
-
def test(self):
|
53
|
-
"""Make sur the addLeaf and clear functions are working"""
|
54
|
-
pass
|
@@ -1,35 +0,0 @@
|
|
1
|
-
from tomwer.tests.conftest import qtapp # noqa F401
|
2
|
-
from tomwer.gui.control.emailnotifier import Emailwidget
|
3
|
-
|
4
|
-
|
5
|
-
def test_Emailwidget(qtapp): # noqa F811
|
6
|
-
"""test of Emailwidget"""
|
7
|
-
widget = Emailwidget()
|
8
|
-
widget.show()
|
9
|
-
|
10
|
-
assert widget.getConfiguration() == {
|
11
|
-
"from_addr": "",
|
12
|
-
"to_addrs": ("",),
|
13
|
-
"subject": "tomwer: {tomo_obj_short_id} received",
|
14
|
-
"text": "{tomo_obj_id} received at {timestamp} \n\nprocesses:\n{dataset_processing_states}\n\nfile listening:\n{ls_tomo_obj}\n\nInfo: {footnote}",
|
15
|
-
"port": 0,
|
16
|
-
"host": "smtps.esrf.fr",
|
17
|
-
}
|
18
|
-
|
19
|
-
new_configuration = {
|
20
|
-
"from_addr": "toto.esrf.fr",
|
21
|
-
"to_addrs": "toto.esrf.fr;tata.esrf.fr",
|
22
|
-
"subject": "this is a scan",
|
23
|
-
"text": "",
|
24
|
-
"port": 445,
|
25
|
-
"host": "smtps.esrf.en",
|
26
|
-
}
|
27
|
-
widget.setConfiguration(new_configuration)
|
28
|
-
|
29
|
-
configuration = widget.getConfiguration()
|
30
|
-
new_configuration.pop("to_addrs")
|
31
|
-
assert configuration.pop("to_addrs") in (
|
32
|
-
("toto.esrf.fr", "tata.esrf.fr"),
|
33
|
-
("tata.esrf.fr", "toto.esrf.fr"),
|
34
|
-
)
|
35
|
-
assert configuration == new_configuration
|
@@ -1,65 +0,0 @@
|
|
1
|
-
# coding: utf-8
|
2
|
-
# /*##########################################################################
|
3
|
-
#
|
4
|
-
# Copyright (c) 2017 European Synchrotron Radiation Facility
|
5
|
-
#
|
6
|
-
# Permission is hereby granted, free of charge, to any person obtaining a copy
|
7
|
-
# of this software and associated documentation files (the "Software"), to deal
|
8
|
-
# in the Software without restriction, including without limitation the rights
|
9
|
-
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
10
|
-
# copies of the Software, and to permit persons to whom the Software is
|
11
|
-
# furnished to do so, subject to the following conditions:
|
12
|
-
#
|
13
|
-
# The above copyright notice and this permission notice shall be included in
|
14
|
-
# all copies or substantial portions of the Software.
|
15
|
-
#
|
16
|
-
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
17
|
-
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
18
|
-
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
19
|
-
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
20
|
-
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
21
|
-
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
|
22
|
-
# THE SOFTWARE.
|
23
|
-
#
|
24
|
-
# ###########################################################################*/
|
25
|
-
|
26
|
-
__authors__ = ["H. Payno"]
|
27
|
-
__license__ = "MIT"
|
28
|
-
__date__ = "09/11/2020"
|
29
|
-
|
30
|
-
|
31
|
-
import pytest
|
32
|
-
from silx.gui import qt
|
33
|
-
from silx.gui.utils.testutils import SignalListener, TestCaseQt
|
34
|
-
|
35
|
-
from tomwer.gui.control.datalistener import ConfigurationWidget
|
36
|
-
from tomwer.tests.utils import skip_gui_test
|
37
|
-
|
38
|
-
|
39
|
-
@pytest.mark.skipif(skip_gui_test(), reason="skip gui test")
|
40
|
-
class TestProcessManager(TestCaseQt):
|
41
|
-
"""
|
42
|
-
Simple test on behavior of the ProcessManager
|
43
|
-
"""
|
44
|
-
|
45
|
-
def setUp(self):
|
46
|
-
TestCaseQt.setUp(self)
|
47
|
-
self._configWidget = ConfigurationWidget(parent=None)
|
48
|
-
self.sig_listener = SignalListener()
|
49
|
-
self._configWidget.sigConfigurationChanged.connect(self.sig_listener)
|
50
|
-
self._configWidget.setHost("localhost")
|
51
|
-
|
52
|
-
def tearDown(self):
|
53
|
-
self._configWidget.setAttribute(qt.Qt.WA_DeleteOnClose)
|
54
|
-
self._configWidget.close()
|
55
|
-
self._configWidget = None
|
56
|
-
|
57
|
-
def testConfiguration(self):
|
58
|
-
self.assertEqual(
|
59
|
-
self._configWidget.getConfiguration(), {"host": "localhost", "port": 4000}
|
60
|
-
)
|
61
|
-
self._configWidget.setPort(0)
|
62
|
-
self._configWidget.setHost("toto")
|
63
|
-
self.assertEqual(
|
64
|
-
self._configWidget.getConfiguration(), {"host": "toto", "port": 0}
|
65
|
-
)
|
@@ -1,67 +0,0 @@
|
|
1
|
-
# coding: utf-8
|
2
|
-
# /*##########################################################################
|
3
|
-
# Copyright (C) 2016 European Synchrotron Radiation Facility
|
4
|
-
#
|
5
|
-
# Permission is hereby granted, free of charge, to any person obtaining a copy
|
6
|
-
# of this software and associated documentation files (the "Software"), to deal
|
7
|
-
# in the Software without restriction, including without limitation the rights
|
8
|
-
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
9
|
-
# copies of the Software, and to permit persons to whom the Software is
|
10
|
-
# furnished to do so, subject to the following conditions:
|
11
|
-
#
|
12
|
-
# The above copyright notice and this permission notice shall be included in
|
13
|
-
# all copies or substantial portions of the Software.
|
14
|
-
#
|
15
|
-
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
16
|
-
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
17
|
-
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
18
|
-
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
19
|
-
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
20
|
-
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
|
21
|
-
# THE SOFTWARE.
|
22
|
-
#
|
23
|
-
#############################################################################*/
|
24
|
-
|
25
|
-
__authors__ = ["H. Payno"]
|
26
|
-
__license__ = "MIT"
|
27
|
-
__date__ = "22/01/2017"
|
28
|
-
|
29
|
-
|
30
|
-
import shutil
|
31
|
-
import tempfile
|
32
|
-
|
33
|
-
import pytest
|
34
|
-
from silx.gui.utils.testutils import TestCaseQt
|
35
|
-
|
36
|
-
from tomwer.core.utils.scanutils import MockEDF
|
37
|
-
from tomwer.gui.control.scanselectorwidget import ScanSelectorWidget
|
38
|
-
from tomwer.tests.utils import skip_gui_test
|
39
|
-
|
40
|
-
|
41
|
-
@pytest.mark.skipif(skip_gui_test(), reason="skip gui test")
|
42
|
-
class TestScanSelector(TestCaseQt):
|
43
|
-
"""
|
44
|
-
Simple test for the ScanSelectorWidget
|
45
|
-
"""
|
46
|
-
|
47
|
-
def setUp(self):
|
48
|
-
self._folder1 = tempfile.mkdtemp()
|
49
|
-
self._folder2 = tempfile.mkdtemp()
|
50
|
-
self._folder3 = tempfile.mkdtemp()
|
51
|
-
for _folder in (self._folder1, self._folder2, self._folder3):
|
52
|
-
MockEDF.mockScan(scanID=_folder, nRadio=5, nRecons=5, nPagRecons=0, dim=10)
|
53
|
-
|
54
|
-
self.widget = ScanSelectorWidget(parent=None)
|
55
|
-
|
56
|
-
def tearDown(self):
|
57
|
-
shutil.rmtree(self._folder1)
|
58
|
-
shutil.rmtree(self._folder2)
|
59
|
-
shutil.rmtree(self._folder3)
|
60
|
-
|
61
|
-
def test(self):
|
62
|
-
self.widget.add(self._folder1)
|
63
|
-
self.widget.add(self._folder2)
|
64
|
-
self.widget.add(self._folder3)
|
65
|
-
self.assertEqual(self.widget.dataList.n_data(), 3)
|
66
|
-
self.widget.remove(self._folder3)
|
67
|
-
self.assertEqual(self.widget.dataList.n_data(), 2)
|
tomwer/gui/edit/test/__init__.py
DELETED
@@ -1,28 +0,0 @@
|
|
1
|
-
# coding: utf-8
|
2
|
-
# /*##########################################################################
|
3
|
-
#
|
4
|
-
# Copyright (c) 2017 European Synchrotron Radiation Facility
|
5
|
-
#
|
6
|
-
# Permission is hereby granted, free of charge, to any person obtaining a copy
|
7
|
-
# of this software and associated documentation files (the "Software"), to deal
|
8
|
-
# in the Software without restriction, including without limitation the rights
|
9
|
-
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
10
|
-
# copies of the Software, and to permit persons to whom the Software is
|
11
|
-
# furnished to do so, subject to the following conditions:
|
12
|
-
#
|
13
|
-
# The above copyright notice and this permission notice shall be included in
|
14
|
-
# all copies or substantial portions of the Software.
|
15
|
-
#
|
16
|
-
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
17
|
-
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
18
|
-
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
19
|
-
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
20
|
-
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
21
|
-
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
|
22
|
-
# THE SOFTWARE.
|
23
|
-
#
|
24
|
-
# ###########################################################################*/
|
25
|
-
|
26
|
-
__authors__ = ["H.Payno"]
|
27
|
-
__license__ = "MIT"
|
28
|
-
__date__ = "29/05/2017"
|
tomwer/gui/icat/gallery.py
DELETED
@@ -1,214 +0,0 @@
|
|
1
|
-
import os
|
2
|
-
from silx.gui import qt
|
3
|
-
from silx.utils.enum import Enum as _Enum
|
4
|
-
from tomwer.core.process.icat.gallery import OutputFormat
|
5
|
-
from tomwer.gui.qlefilesystem import QLFileSystem
|
6
|
-
from tomwer.io.utils import get_default_directory
|
7
|
-
from tomwer.core.utils.dictutils import concatenate_dict
|
8
|
-
from tomwer.core.process.icat.gallery import Binning
|
9
|
-
|
10
|
-
from .publish import PublishProcessedDataWidget
|
11
|
-
|
12
|
-
|
13
|
-
class _GalleryOutputDir(qt.QGroupBox):
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class OutputDirMode(_Enum):
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DATASET_GALLERY = "dataset gallery"
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PROPOSAL_GALLERY = "proposal GALLERY"
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CUSTOM = "custom"
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def __init__(self, parent=None):
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super().__init__(parent)
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self.setLayout(qt.QGridLayout())
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# dataset gallery option
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self._datasetGalleryQRB = qt.QRadioButton(
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self.OutputDirMode.DATASET_GALLERY.value, self
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)
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self.layout().addWidget(self._datasetGalleryQRB, 0, 0, 1, 4)
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# proposal gallery option
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self._proposalGalleryQRB = qt.QRadioButton(
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self.OutputDirMode.PROPOSAL_GALLERY.value, self
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)
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self.layout().addWidget(self._proposalGalleryQRB, 1, 0, 1, 4)
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# other option
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self._otherQRB = qt.QRadioButton(self.OutputDirMode.CUSTOM.value, self)
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self._otherQRB.setCheckable(True)
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self.layout().addWidget(self._otherQRB, 2, 0, 1, 4)
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self._otherQLE = QLFileSystem(
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"", self, filters=qt.QDir.NoDotAndDotDot | qt.QDir.Dirs
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)
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self.layout().addWidget(self._otherQLE, 3, 1, 1, 2)
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style = qt.QApplication.style()
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icon_opendir = style.standardIcon(qt.QStyle.SP_DirOpenIcon)
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self._selectOtherQLE = qt.QPushButton(icon_opendir, "", self)
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self._selectOtherQLE.setIcon(icon_opendir)
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self.layout().addWidget(self._selectOtherQLE, 3, 3, 1, 1)
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48
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# button group
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self._buttonGroup = qt.QButtonGroup()
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self._buttonGroup.setExclusive(True)
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self._buttonGroup.addButton(self._datasetGalleryQRB)
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self._buttonGroup.addButton(self._proposalGalleryQRB)
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self._buttonGroup.addButton(self._otherQRB)
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# vertical spacer
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self._vSpacer = qt.QWidget(self)
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self._vSpacer.setSizePolicy(qt.QSizePolicy.Minimum, qt.QSizePolicy.Expanding)
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self.layout().addWidget(self._vSpacer, 99, 0, 1, 1)
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60
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# set up GUI
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self._datasetGalleryQRB.setChecked(True)
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self._modeChanged()
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# connect signal / slot
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self._buttonGroup.buttonClicked.connect(self._modeChanged)
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self._selectOtherQLE.released.connect(self._selectOutput)
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def _selectOutput(self): # pragma: no cover
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defaultDirectory = self._selectOtherQLE.text()
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if not os.path.isdir(defaultDirectory):
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defaultDirectory = get_default_directory()
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72
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73
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dialog = qt.QFileDialog(self, directory=defaultDirectory)
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dialog.setFileMode(qt.QFileDialog.DirectoryOnly)
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if not dialog.exec_():
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dialog.close()
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return
|
79
|
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|
80
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self._selectOtherQLE.setText(dialog.selectedFiles()[0])
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81
|
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|
82
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def getOutputFolderMode(self):
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83
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if self._datasetGalleryQRB.isChecked():
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84
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return _GalleryOutputDir.OutputDirMode.DATASET_GALLERY
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85
|
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elif self._proposalGalleryQRB.isChecked():
|
86
|
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return _GalleryOutputDir.OutputDirMode.PROPOSAL_GALLERY
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87
|
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elif self._otherQRB.isChecked():
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88
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return _GalleryOutputDir.OutputDirMode.CUSTOM
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|
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else:
|
90
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raise NotImplementedError
|
91
|
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|
92
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def setOutputFolderMode(self, mode):
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93
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mode = _GalleryOutputDir.OutputDirMode.from_value(mode)
|
94
|
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if mode is _GalleryOutputDir.OutputDirMode.PROPOSAL_GALLERY:
|
95
|
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self._proposalGalleryQRB.setChecked(True)
|
96
|
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elif mode is _GalleryOutputDir.OutputDirMode.DATASET_GALLERY:
|
97
|
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self._datasetGalleryQRB.setChecked(True)
|
98
|
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elif mode is _GalleryOutputDir.OutputDirMode.CUSTOM:
|
99
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self._otherQRB.setChecked(True)
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100
|
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else:
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101
|
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raise NotImplementedError
|
102
|
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self._modeChanged()
|
103
|
-
|
104
|
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def getOtherOutputDir(self):
|
105
|
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return self._otherQLE.text()
|
106
|
-
|
107
|
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def setOtherOutputDir(self, path: str):
|
108
|
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self._otherQLE.setText(path)
|
109
|
-
|
110
|
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def _modeChanged(self, *args, **kwargs):
|
111
|
-
custom_active = self._otherQRB.isChecked()
|
112
|
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self._otherQLE.setEnabled(custom_active)
|
113
|
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self._selectOtherQLE.setEnabled(custom_active)
|
114
|
-
|
115
|
-
|
116
|
-
class GalleryWidget(qt.QWidget):
|
117
|
-
"""Widget to let the user define the output location of the screenshots"""
|
118
|
-
|
119
|
-
sigConfigChanged = qt.Signal()
|
120
|
-
"""emit when the configuration has changed"""
|
121
|
-
|
122
|
-
def __init__(self, parent=None):
|
123
|
-
super().__init__(parent)
|
124
|
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self.setLayout(qt.QFormLayout())
|
125
|
-
|
126
|
-
# screenshot precision
|
127
|
-
self._precisonQCB = qt.QComboBox(self)
|
128
|
-
self._precisonQCB.addItem("uint8")
|
129
|
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self.layout().addRow("precision", self._precisonQCB)
|
130
|
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# binning
|
131
|
-
self._binningQCB = qt.QComboBox(self)
|
132
|
-
self._binningQCB.addItems(Binning.values())
|
133
|
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self.layout().addRow("binning", self._binningQCB)
|
134
|
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self._binningQCB.setCurrentText(Binning.SIXTEEN_BY_SIXTEEN.value)
|
135
|
-
self._binningQCB.setToolTip(
|
136
|
-
"To speed up display of the gallery at the data portal side it is highly recommended to bin screenshots"
|
137
|
-
) # recommanded size: 5ko for the entire gallery
|
138
|
-
# output format
|
139
|
-
self._outputFormat = qt.QComboBox(self)
|
140
|
-
self._outputFormat.addItems(OutputFormat.values())
|
141
|
-
self.layout().addRow("outoutput_location_modeput format", self._outputFormat)
|
142
|
-
# gallery output dir
|
143
|
-
self._outputDirWidget = _GalleryOutputDir(self)
|
144
|
-
self._outputLocationLabel = qt.QLabel("output location", self)
|
145
|
-
self.layout().addRow(self._outputLocationLabel, self._outputDirWidget)
|
146
|
-
self._outputDirWidget.hide()
|
147
|
-
self._outputLocationLabel.hide()
|
148
|
-
# overwrite
|
149
|
-
self._overwriteCB = qt.QCheckBox("overwrite", self)
|
150
|
-
self._overwriteCB.setChecked(True)
|
151
|
-
self.layout().addRow(self._overwriteCB)
|
152
|
-
# publishing setting
|
153
|
-
self._publishConfig = PublishProcessedDataWidget(self)
|
154
|
-
self._publisherGB = qt.QGroupBox("icat info")
|
155
|
-
self._publisherGB.setLayout(qt.QVBoxLayout())
|
156
|
-
self._publisherGB.layout().addWidget(self._publishConfig)
|
157
|
-
self.layout().addRow(self._publisherGB)
|
158
|
-
# connect signal / slot
|
159
|
-
self._outputFormat.currentIndexChanged.connect(self._configChanged)
|
160
|
-
self._overwriteCB.toggled.connect(self._configChanged)
|
161
|
-
self._publishConfig.sigConfigChanged.connect(self.sigConfigChanged)
|
162
|
-
self._binningQCB.currentIndexChanged.connect(self._configChanged)
|
163
|
-
|
164
|
-
def getOutputFormat(self) -> OutputFormat:
|
165
|
-
return OutputFormat.from_value(self._outputFormat.currentText())
|
166
|
-
|
167
|
-
def setOutputFormat(self, format: OutputFormat):
|
168
|
-
format = OutputFormat.from_value(format)
|
169
|
-
self._outputFormat.setCurrentText(format.value)
|
170
|
-
|
171
|
-
def getBinning(self) -> Binning:
|
172
|
-
return Binning.from_value(self._binningQCB.currentText())
|
173
|
-
|
174
|
-
def setBinning(self, binning: Binning):
|
175
|
-
binning = Binning.from_value(binning)
|
176
|
-
self._binningQCB.setCurrentText(binning.value)
|
177
|
-
|
178
|
-
def getConfiguration(self):
|
179
|
-
return concatenate_dict(
|
180
|
-
self._publishConfig.getConfiguration(),
|
181
|
-
{
|
182
|
-
"output_format": self.getOutputFormat().value,
|
183
|
-
"output_location_mode": self._outputDirWidget.getOutputFolderMode().value,
|
184
|
-
"custom_output": self._outputDirWidget.getOtherOutputDir(),
|
185
|
-
"overwrite": self._overwriteCB.isChecked(),
|
186
|
-
"binning": self.getBinning().value,
|
187
|
-
},
|
188
|
-
)
|
189
|
-
|
190
|
-
def setConfiguration(self, config: dict):
|
191
|
-
self._publishConfig.setConfiguration(config)
|
192
|
-
output_format = config.get("output_format", None)
|
193
|
-
if output_format is not None:
|
194
|
-
self.setOutputFormat(output_format)
|
195
|
-
|
196
|
-
output_location_mode = config.get("output_location_mode", None)
|
197
|
-
if output_location_mode is not None:
|
198
|
-
self._outputDirWidget.setOutputFolderMode(output_location_mode)
|
199
|
-
|
200
|
-
custom_output = config.get("custom_output", None)
|
201
|
-
if custom_output is not None:
|
202
|
-
self._outputDirWidget.setOtherOutputDir(custom_output)
|
203
|
-
|
204
|
-
overwrite = config.get("overwrite", None)
|
205
|
-
if overwrite is not None:
|
206
|
-
overwrite = overwrite in (True, "True", 1)
|
207
|
-
self._overwriteCB.setChecked(overwrite)
|
208
|
-
|
209
|
-
binning = config.get("binning", None)
|
210
|
-
if binning is not None:
|
211
|
-
self.setBinning(binning=binning)
|
212
|
-
|
213
|
-
def _configChanged(self, *args, **kwargs):
|
214
|
-
self.sigConfigChanged.emit()
|