PyPI - tomwer - Versions diffs - 1.3.27__py3-none-any.whl → 1.4.0rc0__py3-none-any.whl - Mend

tomwer 1.3.27py3-none-any.whl → 1.4.0rc0py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (632) hide show

orangecontrib/tomwer/orange/managedprocess.py +1 -29
orangecontrib/tomwer/orange/settings.py +2 -28
orangecontrib/tomwer/tests/TestAcquisition.py +220 -0
orangecontrib/tomwer/tutorials/append_raw_darks_and_flats_frames_to_NXtomos.ows +2 -2
orangecontrib/tomwer/tutorials/copy_reduced_darks_and_flats_meth1.ows +1 -1
orangecontrib/tomwer/tutorials/{icat_publication.ows → drac_publication.ows} +7 -21
orangecontrib/tomwer/tutorials/id16b/ID16b_full_volume.ows +22 -0
orangecontrib/tomwer/tutorials/id16b/ID16b_insitu.ows +302 -0
orangecontrib/tomwer/tutorials/id16b/ID16b_normalization.ows +218 -0
orangecontrib/tomwer/tutorials/simple_volume_to_slurm_reconstruction.ows +29 -24
orangecontrib/tomwer/tutorials/test_cor.ows +19 -0
orangecontrib/tomwer/tutorials/volume_casting_on_slurm.ows +54 -0
orangecontrib/tomwer/widgets/__init__.py +3 -5
orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py +35 -54
orangecontrib/tomwer/widgets/cluster/SlurmClusterOW.py +1 -31
orangecontrib/tomwer/widgets/control/AdvancementOW.py +1 -29
orangecontrib/tomwer/widgets/control/DataDiscoveryOW.py +5 -4
orangecontrib/tomwer/widgets/control/DataListenerOW.py +1 -29
orangecontrib/tomwer/widgets/control/DataSelectorOW.py +11 -30
orangecontrib/tomwer/widgets/control/DataTransfertOW.py +2 -28
orangecontrib/tomwer/widgets/control/DataValidatorOW.py +1 -28
orangecontrib/tomwer/widgets/control/DataWatcherOW.py +1 -28
orangecontrib/tomwer/widgets/control/EDF2NXTomomillOW.py +48 -51
orangecontrib/tomwer/widgets/control/EmailOW.py +12 -2
orangecontrib/tomwer/widgets/control/FilterOW.py +1 -28
orangecontrib/tomwer/widgets/control/NXTomomillOW.py +37 -53
orangecontrib/tomwer/widgets/control/NXtomoConcatenate.py +21 -20
orangecontrib/tomwer/widgets/control/NotifierOW.py +9 -28
orangecontrib/tomwer/widgets/control/ReduceDarkFlatSelectorOW.py +3 -2
orangecontrib/tomwer/widgets/control/SingleTomoObjOW.py +1 -27
orangecontrib/tomwer/widgets/control/TimerOW.py +9 -28
orangecontrib/tomwer/widgets/control/TomoObjSeriesOW.py +58 -0
orangecontrib/tomwer/widgets/control/VolumeSelector.py +8 -30
orangecontrib/tomwer/widgets/control/icons/nxtomomill.svg +173 -119
orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.png +0 -0
orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.svg +55 -195
orangecontrib/tomwer/widgets/control/icons/{tomoobjserie.svg → tomoobjseries.svg} +2 -2
orangecontrib/tomwer/widgets/dataportal/PublishProcessedDataOW.py +172 -0
orangecontrib/tomwer/widgets/{icat → dataportal}/__init__.py +2 -2
orangecontrib/tomwer/widgets/debugtools/DatasetGeneratorOW.py +2 -29
orangecontrib/tomwer/widgets/debugtools/ObjectInspectorOW.py +1 -29
orangecontrib/tomwer/widgets/edit/DarkFlatPatchOW.py +48 -73
orangecontrib/tomwer/widgets/edit/ImageKeyEditorOW.py +48 -75
orangecontrib/tomwer/widgets/edit/ImageKeyUpgraderOW.py +5 -30
orangecontrib/tomwer/widgets/edit/NXtomoEditorOW.py +51 -52
orangecontrib/tomwer/widgets/other/PythonScriptOW.py +22 -10
orangecontrib/tomwer/widgets/reconstruction/AxisOW.py +48 -49
orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py +22 -68
orangecontrib/tomwer/widgets/reconstruction/DarkRefAndCopyOW.py +3 -30
orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py +21 -19
orangecontrib/tomwer/widgets/reconstruction/NabuOW.py +7 -70
orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py +40 -85
orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py +15 -40
orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py +13 -35
orangecontrib/tomwer/widgets/reconstruction/SinoNormOW.py +2 -30
orangecontrib/tomwer/widgets/stitching/ZStitchingConfigOW.py +11 -11
orangecontrib/tomwer/widgets/utils.py +2 -29
orangecontrib/tomwer/widgets/visualization/DataViewerOW.py +1 -27
orangecontrib/tomwer/widgets/visualization/DiffViewerOW.py +1 -27
orangecontrib/tomwer/widgets/visualization/NXtomoMetadataViewerOW.py +1 -1
orangecontrib/tomwer/widgets/visualization/RadioStackOW.py +2 -28
orangecontrib/tomwer/widgets/visualization/SampleMovedOW.py +1 -27
orangecontrib/tomwer/widgets/visualization/SinogramViewerOW.py +1 -27
orangecontrib/tomwer/widgets/visualization/SliceStackOW.py +2 -28
tomwer/__init__.py +3 -28
tomwer/__main__.py +8 -4
tomwer/app/__init__.py +2 -0
tomwer/app/axis.py +8 -7
tomwer/app/canvas.py +23 -29
tomwer/app/canvas_launcher/config.py +14 -102
tomwer/app/canvas_launcher/environ.py +5 -8
tomwer/app/canvas_launcher/mainwindow.py +175 -69
tomwer/app/canvas_launcher/splash.py +1 -3
tomwer/app/canvas_launcher/utils.py +47 -0
tomwer/app/canvas_launcher/widgetsscheme.py +3 -10
tomwer/app/diffframe.py +2 -0
tomwer/app/imagekeyeditor.py +2 -1
tomwer/app/imagekeyupgrader.py +2 -0
tomwer/app/multicor.py +5 -2
tomwer/app/multipag.py +7 -4
tomwer/app/nabuapp.py +2 -1
tomwer/app/nxtomoeditor.py +17 -12
tomwer/app/patchrawdarkflat.py +2 -0
tomwer/app/radiostack.py +3 -2
tomwer/app/reducedarkflat.py +3 -0
tomwer/app/samplemoved.py +2 -0
tomwer/app/scanviewer.py +2 -0
tomwer/app/sinogramviewer.py +2 -0
tomwer/app/slicestack.py +11 -13
tomwer/app/stitching/common.py +431 -0
tomwer/app/stopdatalistener.py +3 -0
tomwer/app/ystitching.py +26 -0
tomwer/app/zstitching.py +8 -363
tomwer/core/__init__.py +2 -28
tomwer/core/cluster/__init__.py +3 -0
tomwer/core/cluster/cluster.py +10 -26
tomwer/core/futureobject.py +17 -43
tomwer/core/log/__init__.py +2 -0
tomwer/core/log/processlog.py +0 -28
tomwer/core/process/cluster/supervisor.py +52 -34
tomwer/core/process/conditions/filters.py +3 -28
tomwer/core/process/control/datalistener/datalistener.py +7 -75
tomwer/core/process/control/datalistener/rpcserver.py +8 -38
tomwer/core/process/control/datawatcher/datawatcher.py +11 -40
tomwer/core/process/control/datawatcher/datawatcherobserver.py +30 -64
tomwer/core/process/control/datawatcher/datawatcherprocess.py +11 -32
tomwer/core/process/control/datawatcher/edfdwprocess.py +2 -27
tomwer/core/process/control/datawatcher/hdf5dwprocess.py +1 -26
tomwer/core/process/control/datawatcher/status.py +1 -26
tomwer/core/process/control/emailnotifier.py +11 -23
tomwer/core/process/control/nxtomoconcatenate.py +20 -18
tomwer/core/process/control/nxtomomill.py +9 -44
tomwer/core/process/control/scanlist.py +0 -27
tomwer/core/process/control/scantransfer.py +15 -13
tomwer/core/process/control/scanvalidator.py +4 -30
tomwer/core/process/control/{test → tests}/test_concatenate_nxtomos.py +5 -5
tomwer/core/process/control/timer.py +1 -27
tomwer/core/process/control/tomoobjseries.py +12 -0
tomwer/core/process/drac/binning.py +37 -0
tomwer/core/process/drac/dracbase.py +170 -0
tomwer/core/process/drac/gallery.py +109 -0
tomwer/core/process/drac/output.py +12 -0
tomwer/core/process/drac/processeddataset.py +147 -0
tomwer/core/process/drac/publish.py +118 -0
tomwer/core/process/drac/rawdataset.py +142 -0
tomwer/core/process/drac/tests/test_gallery.py +71 -0
tomwer/core/process/drac/tests/test_icat_processed_dataset.py +80 -0
tomwer/core/process/drac/tests/test_icat_raw_dataset.py +90 -0
tomwer/core/process/edit/darkflatpatch.py +1 -28
tomwer/core/process/edit/imagekeyeditor.py +4 -32
tomwer/core/process/edit/nxtomoeditor.py +307 -0
tomwer/core/process/edit/tests/test_darkflatpatch.py +243 -0
tomwer/core/process/edit/tests/test_imagekey_editor.py +99 -0
tomwer/core/process/output.py +9 -2
tomwer/core/process/reconstruction/__init__.py +0 -26
tomwer/core/process/reconstruction/axis/anglemode.py +1 -29
tomwer/core/process/reconstruction/axis/axis.py +63 -111
tomwer/core/process/reconstruction/axis/mode.py +5 -3
tomwer/core/process/reconstruction/axis/params.py +5 -146
tomwer/core/process/reconstruction/axis/projectiontype.py +0 -28
tomwer/core/process/reconstruction/darkref/darkrefs.py +14 -39
tomwer/core/process/reconstruction/darkref/darkrefscopy.py +7 -39
tomwer/core/process/reconstruction/darkref/params.py +1 -28
tomwer/core/process/reconstruction/nabu/castvolume.py +19 -34
tomwer/core/process/reconstruction/nabu/nabucommon.py +18 -43
tomwer/core/process/reconstruction/nabu/nabuscores.py +47 -48
tomwer/core/process/reconstruction/nabu/nabuslices.py +59 -105
tomwer/core/process/reconstruction/nabu/nabuvolume.py +44 -70
tomwer/core/process/reconstruction/nabu/plane.py +10 -0
tomwer/core/process/reconstruction/nabu/settings.py +1 -28
tomwer/core/process/reconstruction/nabu/target.py +0 -28
tomwer/core/process/reconstruction/nabu/test/test_castvolume.py +116 -0
tomwer/core/process/reconstruction/nabu/test/test_nabu_utils.py +277 -0
tomwer/core/process/reconstruction/nabu/test/test_nabunormalization.py +199 -0
tomwer/core/process/reconstruction/nabu/utils.py +11 -60
tomwer/core/process/reconstruction/normalization/normalization.py +2 -32
tomwer/core/process/reconstruction/normalization/params.py +3 -35
tomwer/core/process/reconstruction/output.py +14 -19
tomwer/core/process/reconstruction/paramsbase.py +4 -33
tomwer/core/process/reconstruction/saaxis/params.py +5 -33
tomwer/core/process/reconstruction/saaxis/saaxis.py +18 -47
tomwer/core/process/reconstruction/sadeltabeta/params.py +2 -31
tomwer/core/process/reconstruction/sadeltabeta/sadeltabeta.py +16 -44
tomwer/core/process/reconstruction/scores/params.py +9 -39
tomwer/core/process/reconstruction/scores/scores.py +10 -42
tomwer/core/process/reconstruction/tests/__init__.py +0 -0
tomwer/core/process/reconstruction/tests/test_axis.py +46 -0
tomwer/core/process/reconstruction/tests/test_darkref.py +33 -0
tomwer/core/process/reconstruction/{test → tests}/test_saaxis.py +1 -27
tomwer/core/process/reconstruction/tests/test_sadeltabeta.py +48 -0
tomwer/core/process/script/python.py +1 -27
tomwer/core/process/script/tests/test_script.py +41 -0
tomwer/core/process/stitching/metadataholder.py +5 -4
tomwer/core/process/stitching/nabustitcher.py +35 -5
tomwer/core/process/stitching/tests/test_metadataholder.py +17 -0
tomwer/core/process/task.py +20 -63
tomwer/core/process/tests/__init__.py +0 -0
tomwer/core/process/{test → tests}/test_axis.py +1 -79
tomwer/core/process/{test → tests}/test_conditions.py +1 -28
tomwer/core/process/{test → tests}/test_dark_and_flat.py +1 -27
tomwer/core/process/{test → tests}/test_data_listener.py +1 -27
tomwer/core/process/{test → tests}/test_data_transfer.py +2 -28
tomwer/core/process/{test → tests}/test_data_watcher.py +1 -27
tomwer/core/process/{test → tests}/test_nabu.py +4 -33
tomwer/core/process/{test → tests}/test_normalization.py +1 -26
tomwer/core/process/{test → tests}/test_timer.py +1 -27
tomwer/core/process/utils.py +2 -31
tomwer/core/process/visualization/dataviewer.py +1 -26
tomwer/core/process/visualization/diffviewer.py +1 -26
tomwer/core/process/visualization/imagestackviewer.py +0 -26
tomwer/core/process/visualization/radiostack.py +0 -26
tomwer/core/process/visualization/samplemoved.py +0 -28
tomwer/core/process/visualization/sinogramviewer.py +0 -27
tomwer/core/process/visualization/slicestack.py +0 -28
tomwer/core/process/visualization/tests/test_data_viewer.py +12 -0
tomwer/core/process/visualization/tests/test_diff_viewer.py +12 -0
tomwer/core/process/visualization/tests/test_image_stack_viewer.py +14 -0
tomwer/core/process/visualization/tests/test_radio_stack.py +12 -0
tomwer/core/process/visualization/tests/test_sample_moved.py +14 -0
tomwer/core/process/visualization/tests/test_sinogram_viewer.py +13 -0
tomwer/core/process/visualization/tests/test_slice_stack.py +13 -0
tomwer/core/process/visualization/tests/test_volume_viewer.py +12 -0
tomwer/core/process/visualization/volumeviewer.py +0 -29
tomwer/core/scan/__init__.py +3 -27
tomwer/core/scan/blissscan.py +5 -34
tomwer/core/scan/edfscan.py +19 -53
tomwer/core/scan/hdf5scan.py +2 -2
tomwer/core/scan/nxtomoscan.py +46 -54
tomwer/core/scan/scanbase.py +104 -200
tomwer/core/scan/scanfactory.py +11 -41
tomwer/core/scan/tests/__init__.py +0 -0
tomwer/core/scan/tests/test_edf.py +25 -0
tomwer/core/scan/tests/test_future_scan.py +35 -0
tomwer/core/scan/tests/test_nxtomoscan.py +143 -0
tomwer/core/scan/{test → tests}/test_process_registration.py +1 -28
tomwer/core/settings.py +18 -40
tomwer/core/tests/__init__.py +0 -0
tomwer/core/tests/test_scanutils.py +26 -0
tomwer/core/{test → tests}/test_utils.py +1 -28
tomwer/core/tomwer_object.py +4 -0
tomwer/core/utils/__init__.py +2 -0
tomwer/core/utils/char.py +0 -28
tomwer/core/utils/deprecation.py +12 -38
tomwer/core/utils/dictutils.py +1 -3
tomwer/core/utils/ftseriesutils.py +1 -27
tomwer/core/utils/gpu.py +0 -28
tomwer/core/utils/image.py +8 -39
tomwer/core/utils/locker.py +1 -28
tomwer/core/utils/logconfig.py +0 -27
tomwer/core/utils/normalization.py +4 -31
tomwer/core/utils/nxtomoutils.py +8 -38
tomwer/core/utils/resource.py +0 -26
tomwer/core/utils/scanutils.py +23 -52
tomwer/core/utils/slurm.py +7 -30
tomwer/core/utils/spec.py +6 -6
tomwer/core/utils/tests/__init__.py +0 -0
tomwer/core/utils/tests/test_image.py +30 -0
tomwer/core/utils/tests/test_nxtomo.py +38 -0
tomwer/core/utils/tests/test_scan_utils.py +46 -0
tomwer/core/utils/tests/test_time.py +6 -0
tomwer/core/utils/threads.py +0 -26
tomwer/core/utils/time.py +0 -27
tomwer/core/volume/__init__.py +4 -0
tomwer/core/volume/edfvolume.py +1 -28
tomwer/core/volume/hdf5volume.py +1 -28
tomwer/core/volume/jp2kvolume.py +1 -27
tomwer/core/volume/rawvolume.py +1 -28
tomwer/core/volume/tests/test_volumes.py +21 -0
tomwer/core/volume/tiffvolume.py +1 -28
tomwer/core/volume/volumebase.py +5 -0
tomwer/core/volume/volumefactory.py +7 -33
tomwer/gui/__init__.py +0 -28
tomwer/gui/cluster/__init__.py +2 -0
tomwer/gui/cluster/slurm.py +297 -95
tomwer/gui/cluster/supervisor.py +1 -27
tomwer/gui/cluster/tests/__init__.py +0 -0
tomwer/gui/cluster/{test → tests}/test_cluster.py +21 -26
tomwer/gui/cluster/{test → tests}/test_supervisor.py +1 -27
tomwer/gui/conditions/__init__.py +2 -0
tomwer/gui/conditions/filter.py +1 -26
tomwer/gui/configuration/__init__.py +2 -0
tomwer/gui/control/__init__.py +2 -0
tomwer/gui/control/actions.py +2 -28
tomwer/gui/control/datadiscovery.py +4 -3
tomwer/gui/control/datalist.py +64 -69
tomwer/gui/control/datalistener.py +1 -39
tomwer/gui/control/datareacheractions.py +1 -28
tomwer/gui/control/datatransfert.py +2 -29
tomwer/gui/control/datavalidator.py +3 -37
tomwer/gui/control/datawatcher/__init__.py +0 -28
tomwer/gui/control/datawatcher/configuration.py +1 -28
tomwer/gui/control/datawatcher/datawatcher.py +3 -32
tomwer/gui/control/datawatcher/datawatcherobserver.py +2 -28
tomwer/gui/control/history.py +5 -35
tomwer/gui/control/nxtomomill.py +3 -30
tomwer/gui/control/observations.py +61 -55
tomwer/gui/control/reducedarkflatselector.py +24 -20
tomwer/gui/control/scanselectorwidget.py +2 -28
tomwer/gui/control/selectorwidgetbase.py +17 -17
tomwer/gui/control/series/__init__.py +0 -0
tomwer/gui/control/{serie/seriecreator.py → series/seriescreator.py} +214 -235
tomwer/gui/control/series/serieswaiter.py +0 -0
tomwer/gui/control/series/test/test_creator.py +424 -0
tomwer/gui/control/series/test/test_nxtomo_concatenate.py +21 -0
tomwer/gui/control/singletomoobj.py +1 -1
tomwer/gui/control/tests/__init__.py +0 -0
tomwer/gui/control/tests/test_datalist.py +47 -0
tomwer/gui/control/{test → tests}/test_datalistener.py +1 -28
tomwer/gui/control/tests/test_datavalidator.py +27 -0
tomwer/gui/control/{test → tests}/test_inputwidget.py +1 -27
tomwer/gui/control/tests/test_process_manager.py +38 -0
tomwer/gui/control/tests/test_scan_observations.py +23 -0
tomwer/gui/control/tests/test_scanselector.py +42 -0
tomwer/gui/control/{test → tests}/test_scanvalidator.py +1 -27
tomwer/gui/control/{test → tests}/test_volume_dialog.py +2 -30
tomwer/gui/control/{test → tests}/test_volumeselector.py +1 -27
tomwer/gui/control/volumeselectorwidget.py +2 -30
tomwer/gui/dataportal/__init__.py +2 -0
tomwer/gui/{icat → dataportal}/createscreenshots.py +3 -2
tomwer/gui/dataportal/gallery.py +133 -0
tomwer/gui/dataportal/outputformat.py +0 -0
tomwer/gui/dataportal/publish.py +96 -0
tomwer/gui/dataportal/tests/test_create_screenshots_gui.py +23 -0
tomwer/gui/dataportal/tests/test_gallery_gui.py +21 -0
tomwer/gui/debugtools/__init__.py +2 -0
tomwer/gui/debugtools/datasetgenerator.py +1 -30
tomwer/gui/debugtools/objectinspector.py +1 -29
tomwer/gui/dialog/QDataDialog.py +89 -0
tomwer/gui/{qfolderdialog.py → dialog/QVolumeDialog.py} +8 -107
tomwer/gui/dialog/__init__.py +1 -0
tomwer/gui/edit/__init__.py +2 -0
tomwer/gui/edit/dkrfpatch.py +52 -87
tomwer/gui/edit/imagekeyeditor.py +18 -54
tomwer/gui/edit/nxtomoeditor.py +113 -300
tomwer/gui/edit/nxtomowarmer.py +3 -2
tomwer/gui/edit/tests/__init__.py +0 -0
tomwer/gui/edit/{test → tests}/test_dkrf_patch.py +3 -29
tomwer/gui/edit/{test → tests}/test_image_key_editor.py +1 -27
tomwer/gui/edit/{test → tests}/test_nx_editor.py +45 -23
tomwer/gui/icons.py +28 -66
tomwer/gui/illustrations.py +4 -34
tomwer/gui/imagefromfile.py +5 -30
tomwer/gui/metadataloader.py +36 -0
tomwer/gui/qconfigfile.py +3 -0
tomwer/gui/qlefilesystem.py +3 -0
tomwer/gui/reconstruction/__init__.py +2 -0
tomwer/gui/reconstruction/axis/AxisMainWindow.py +264 -0
tomwer/gui/reconstruction/axis/AxisOptionsWidget.py +153 -0
tomwer/gui/reconstruction/axis/AxisSettingsWidget.py +776 -0
tomwer/gui/reconstruction/axis/AxisWidget.py +526 -0
tomwer/gui/reconstruction/axis/CalculationWidget.py +374 -0
tomwer/gui/reconstruction/axis/CompareImages.py +11 -44
tomwer/gui/reconstruction/axis/ControlWidget.py +277 -0
tomwer/gui/reconstruction/axis/InputWidget.py +491 -0
tomwer/gui/reconstruction/axis/ManualFramesSelection.py +168 -0
tomwer/gui/reconstruction/axis/__init__.py +2 -2
tomwer/gui/reconstruction/darkref/__init__.py +0 -27
tomwer/gui/reconstruction/darkref/darkrefcopywidget.py +5 -34
tomwer/gui/reconstruction/darkref/darkrefwidget.py +1 -27
tomwer/gui/reconstruction/nabu/castvolume.py +40 -59
tomwer/gui/reconstruction/nabu/check.py +7 -33
tomwer/gui/reconstruction/nabu/nabuconfig/base.py +7 -34
tomwer/gui/reconstruction/nabu/nabuconfig/ctf.py +6 -5
tomwer/gui/reconstruction/nabu/nabuconfig/nabuconfig.py +10 -69
tomwer/gui/reconstruction/nabu/nabuconfig/output.py +3 -47
tomwer/gui/reconstruction/nabu/nabuconfig/phase.py +54 -36
tomwer/gui/reconstruction/nabu/nabuconfig/preprocessing.py +103 -54
tomwer/gui/reconstruction/nabu/nabuconfig/reconstruction.py +116 -65
tomwer/gui/reconstruction/nabu/nabuflow.py +31 -61
tomwer/gui/reconstruction/nabu/platform.py +94 -0
tomwer/gui/reconstruction/nabu/slices.py +81 -45
tomwer/gui/reconstruction/nabu/slurm.py +1 -27
tomwer/gui/reconstruction/nabu/test/test_cast_volume.py +82 -0
tomwer/gui/reconstruction/nabu/test/test_check.py +66 -0
tomwer/gui/reconstruction/nabu/test/test_ctf.py +46 -0
tomwer/gui/reconstruction/nabu/test/test_helical.py +21 -0
tomwer/gui/reconstruction/nabu/test/test_nabu_preprocessing.py +81 -0
tomwer/gui/reconstruction/nabu/volume.py +62 -90
tomwer/gui/reconstruction/normalization/intensity.py +5 -32
tomwer/gui/reconstruction/normalization/test/test_intensity.py +89 -0
tomwer/gui/reconstruction/saaxis/corrangeselector.py +16 -49
tomwer/gui/reconstruction/saaxis/dimensionwidget.py +56 -96
tomwer/gui/reconstruction/saaxis/saaxis.py +17 -38
tomwer/gui/reconstruction/saaxis/sliceselector.py +8 -39
tomwer/gui/reconstruction/sadeltabeta/saadeltabeta.py +19 -37
tomwer/gui/reconstruction/scores/control.py +2 -30
tomwer/gui/reconstruction/scores/scoreplot.py +19 -48
tomwer/gui/reconstruction/tests/__init__.py +0 -0
tomwer/gui/reconstruction/{test → tests}/test_axis.py +23 -49
tomwer/gui/reconstruction/{test → tests}/test_nabu.py +8 -31
tomwer/gui/reconstruction/{test → tests}/test_saaxis.py +10 -37
tomwer/gui/reconstruction/{test → tests}/test_sadeltabeta.py +1 -26
tomwer/gui/samplemoved/__init__.py +2 -30
tomwer/gui/samplemoved/selectiontable.py +3 -33
tomwer/gui/settings.py +7 -0
tomwer/gui/stackplot.py +33 -661
tomwer/gui/stacks.py +261 -135
tomwer/gui/stitching/SingleAxisStitchingWidget.py +326 -0
tomwer/gui/stitching/StitchingOptionsWidget.py +438 -0
tomwer/gui/stitching/StitchingWindow.py +586 -0
tomwer/gui/stitching/__init__.py +2 -0
tomwer/gui/stitching/alignment.py +90 -0
tomwer/gui/stitching/axisorderedlist.py +44 -34
tomwer/gui/stitching/config/axisparams.py +23 -11
tomwer/gui/stitching/config/output.py +6 -5
tomwer/gui/stitching/config/positionoveraxis.py +313 -51
tomwer/gui/stitching/config/stitchingstrategies.py +22 -16
tomwer/gui/stitching/config/tests/test_axisparams.py +25 -0
tomwer/gui/stitching/config/tomoobjdetails.py +3 -5
tomwer/gui/stitching/normalization.py +1 -0
tomwer/gui/stitching/preview.py +59 -0
tomwer/gui/stitching/singleaxis.py +57 -0
tomwer/gui/stitching/stitchandbackground.py +3 -2
tomwer/gui/stitching/stitching_preview.py +44 -36
tomwer/gui/stitching/stitching_raw.py +5 -3
tomwer/gui/stitching/tests/test_ZStitchingWindow.py +88 -0
tomwer/gui/stitching/tests/test_axis_ordered_list.py +21 -0
tomwer/gui/stitching/tests/test_normalization.py +27 -0
tomwer/gui/stitching/tests/test_preview.py +68 -0
tomwer/gui/stitching/tests/test_stitching_raw.py +110 -0
tomwer/gui/stitching/tests/utils.py +92 -0
tomwer/gui/stitching/utils.py +14 -0
tomwer/gui/stitching/z_stitching/fineestimation.py +4 -32
tomwer/gui/stitching/z_stitching/tests/test_fine_estimation.py +35 -0
tomwer/gui/stitching/z_stitching/tests/test_raw_estimation.py +215 -0
tomwer/gui/stitching/z_stitching/tests/test_stitching_window.py +51 -0
tomwer/gui/tests/__init__.py +0 -0
tomwer/gui/tests/test_axis_gui.py +27 -0
tomwer/gui/{test → tests}/test_qfolder_dialog.py +1 -1
tomwer/gui/utils/RangeWidget.py +44 -0
tomwer/gui/utils/buttons.py +4 -3
tomwer/gui/utils/completer.py +2 -33
tomwer/gui/utils/flow.py +11 -40
tomwer/gui/utils/gpu.py +60 -0
tomwer/gui/utils/illustrations.py +1 -26
tomwer/gui/utils/inputwidget.py +35 -73
tomwer/gui/utils/lineselector/lineselector.py +9 -46
tomwer/gui/utils/loadingmode.py +81 -0
tomwer/gui/utils/qt_utils.py +9 -0
tomwer/gui/utils/sandboxes.py +1 -26
tomwer/gui/utils/scandescription.py +2 -31
tomwer/gui/utils/scrollarea.py +6 -55
tomwer/gui/utils/slider.py +4 -28
tomwer/gui/utils/splashscreen.py +0 -28
tomwer/gui/utils/step.py +14 -13
tomwer/gui/utils/tests/test_completer.py +41 -0
tomwer/gui/utils/tests/test_line_selector.py +21 -0
tomwer/gui/utils/tests/test_splashscreen.py +8 -0
tomwer/gui/utils/tests/test_vignettes.py +68 -0
tomwer/gui/utils/unitsystem.py +15 -69
tomwer/gui/utils/utils.py +4 -5
tomwer/gui/utils/vignettes.py +10 -41
tomwer/gui/utils/waiterthread.py +0 -26
tomwer/gui/visualization/__init__.py +2 -0
tomwer/gui/visualization/dataviewer.py +68 -421
tomwer/gui/visualization/diffviewer/diffviewer.py +2 -30
tomwer/gui/visualization/diffviewer/shiftwidget.py +4 -29
tomwer/gui/visualization/fullscreenplot.py +5 -5
tomwer/gui/visualization/imagestack.py +403 -0
tomwer/gui/visualization/nxtomometadata.py +0 -4
tomwer/gui/visualization/reconstructionparameters.py +14 -32
tomwer/gui/visualization/scanoverview.py +33 -66
tomwer/gui/visualization/sinogramviewer.py +2 -28
tomwer/gui/visualization/test/__init__.py +0 -28
tomwer/gui/visualization/test/test_dataviewer.py +1 -28
tomwer/gui/visualization/test/test_diffviewer.py +1 -28
tomwer/gui/visualization/test/test_nx_tomo_metadata_viewer.py +0 -5
tomwer/gui/visualization/test/test_reconstruction_parameters.py +1 -27
tomwer/gui/visualization/test/test_sinogramviewer.py +1 -28
tomwer/gui/visualization/test/test_stacks.py +184 -115
tomwer/gui/visualization/test/test_volumeviewer.py +3 -2
tomwer/gui/visualization/tomoobjoverview.py +2 -2
tomwer/gui/visualization/volumeoverview.py +3 -2
tomwer/gui/visualization/volumeviewer.py +47 -43
tomwer/io/__init__.py +2 -0
tomwer/io/utils/h5pyutils.py +1 -27
tomwer/io/utils/test/test_raw_and_processed_data.py +10 -0
tomwer/io/utils/test/test_utils.py +67 -0
tomwer/io/utils/utils.py +2 -31
tomwer/resources/__init__.py +13 -33
tomwer/resources/gui/icons/edit_downstream.svg +114 -0
tomwer/resources/gui/icons/edit_upstream.svg +112 -0
tomwer/resources/gui/icons/free_edition.svg +23 -0
tomwer/resources/gui/icons/icat_gallery_opts.png +0 -0
tomwer/resources/gui/icons/icat_gallery_opts.svg +80 -0
tomwer/resources/gui/icons/search.png +0 -0
tomwer/resources/gui/icons/search.svg +23 -0
tomwer/resources/gui/icons/warning.png +0 -0
tomwer/synctools/__init__.py +2 -0
tomwer/synctools/axis.py +1 -27
tomwer/synctools/darkref.py +1 -26
tomwer/synctools/datalistener.py +1 -27
tomwer/synctools/datatransfert.py +2 -27
tomwer/synctools/imageloaderthread.py +1 -28
tomwer/synctools/rsyncmanager.py +1 -25
tomwer/synctools/saaxis.py +1 -26
tomwer/synctools/sadeltabeta.py +1 -26
tomwer/synctools/stacks/control/datalistener.py +1 -26
tomwer/synctools/stacks/processingstack.py +4 -33
tomwer/synctools/stacks/reconstruction/axis.py +2 -31
tomwer/synctools/stacks/reconstruction/castvolume.py +12 -43
tomwer/synctools/stacks/reconstruction/dkrefcopy.py +3 -26
tomwer/synctools/stacks/reconstruction/nabu.py +1 -26
tomwer/synctools/stacks/reconstruction/normalization.py +1 -26
tomwer/synctools/stacks/reconstruction/saaxis.py +1 -26
tomwer/synctools/stacks/reconstruction/sadeltabeta.py +1 -26
tomwer/synctools/tests/__init__.py +0 -0
tomwer/synctools/{test → tests}/test_darkRefs.py +16 -40
tomwer/synctools/{test → tests}/test_foldertransfer.py +2 -33
tomwer/synctools/utils/scanstages.py +2 -31
tomwer/tests/__init__.py +1 -0
tomwer/tests/app/test_stitching.py +95 -0
tomwer/tests/datasets.py +1 -5
tomwer/tests/orangecontrib/tomwer/widgets/cluster/tests/test_future_supervisorow.py +48 -0
tomwer/tests/orangecontrib/tomwer/widgets/cluster/tests/test_slurm_clusterow.py +40 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_advancement.py +8 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_data_validator.py +55 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datadiscovery.py +129 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datalistener.py +111 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_dataselector.py +69 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datawatcher.py +411 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_emailow.py +29 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_notifier.py +24 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_nxtomo_concatenate_ow.py +64 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_nxtomomill.py +133 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_reduce_dark_flat_selector.py +40 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_singletomoobj.py +40 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_timerow.py +25 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_tomoobj_series.py +96 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_volume_selector.py +69 -0
orangecontrib/tomwer/widgets/edit/test/test_image_key_editor.py → tomwer/tests/orangecontrib/tomwer/widgets/debugtools/tests/test_dataset_generator.py +17 -16
tomwer/tests/orangecontrib/tomwer/widgets/debugtools/tests/test_object_inspector.py +36 -0
{orangecontrib/tomwer/widgets/edit/test → tomwer/tests/orangecontrib/tomwer/widgets/edit/tests}/test_dark_flat_patch.py +1 -27
tomwer/tests/orangecontrib/tomwer/widgets/edit/tests/test_image_key_editor.py +30 -0
tomwer/tests/orangecontrib/tomwer/widgets/edit/tests/test_nxtomo_editor.py +138 -0
tomwer/tests/orangecontrib/tomwer/widgets/other/tests/test_pythonscript.py +31 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_axis.py +215 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_cast_volumeow.py +58 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_dark_refs_widget.py +136 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_delta_beta_selector.py +15 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_i_norm.py +200 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_helical_prepare_weights_double.py +20 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_volume.py +74 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_widget.py +107 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_sa_delta_beta.py +194 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_saaxis.py +194 -0
tomwer/tests/orangecontrib/tomwer/widgets/stitching/tests/test_zstitching.py +313 -0
tomwer/tests/orangecontrib/tomwer/widgets/tests/test_conditions.py +85 -0
tomwer/tests/orangecontrib/tomwer/widgets/tests/test_darkref.py +225 -0
tomwer/tests/orangecontrib/tomwer/widgets/tests/test_foldertransfert.py +105 -0
tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_dataviewerow.py +57 -0
tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_diffviewerow.py +39 -0
tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_nxtomo_metadata_viewer.py +29 -0
tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_radio_stackow.py +31 -0
tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_sample_movedow.py +46 -0
tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_sinogram_viewerow.py +31 -0
tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_slice_stackow.py +31 -0
tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_volume_viewerow.py +32 -0
tomwer/tests/test_ewoks/test_conversion.py +104 -0
tomwer/tests/test_ewoks/test_single_node_execution.py +87 -0
tomwer/tests/test_ewoks/test_workflows.py +138 -0
tomwer/utils.py +11 -39
tomwer/version.py +3 -3
{tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/LICENSE +3 -3
tomwer-1.4.0rc0.dist-info/METADATA +337 -0
tomwer-1.4.0rc0.dist-info/RECORD +909 -0
{tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/WHEEL +1 -1
{tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/entry_points.txt +1 -0
orangecontrib/tomwer/widgets/control/DataListOW.py +0 -129
orangecontrib/tomwer/widgets/control/TomoObjSerieOW.py +0 -86
orangecontrib/tomwer/widgets/control/VolumeSymLinkOW.py +0 -182
orangecontrib/tomwer/widgets/edit/test/test_nxtomo_editor.py +0 -141
orangecontrib/tomwer/widgets/icat/PublishProcessedDataOW.py +0 -115
orangecontrib/tomwer/widgets/icat/RawDataScreenshotCreatorOW.py +0 -98
orangecontrib/tomwer/widgets/icat/SaveToGalleryAndPublishOW.py +0 -129
orangecontrib/tomwer/widgets/icat/icons/add_gallery.png +0 -0
orangecontrib/tomwer/widgets/icat/icons/add_gallery.svg +0 -82
orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.png +0 -0
orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.svg +0 -143
orangecontrib/tomwer/widgets/visualization/LivesliceOW.py +0 -87
orangecontrib/tomwer/widgets/visualization/icons/liveslice.png +0 -0
orangecontrib/tomwer/widgets/visualization/icons/liveslice.svg +0 -110
tomwer/core/log/logger.py +0 -130
tomwer/core/process/control/test/test_volume_link.py +0 -74
tomwer/core/process/control/tomoobjserie.py +0 -12
tomwer/core/process/control/volumesymlink.py +0 -200
tomwer/core/process/icat/createscreenshots.py +0 -100
tomwer/core/process/icat/gallery.py +0 -377
tomwer/core/process/icat/icatbase.py +0 -36
tomwer/core/process/icat/publish.py +0 -228
tomwer/core/process/icat/screenshots.py +0 -27
tomwer/core/process/reconstruction/test/test_darkref.py +0 -60
tomwer/core/process/reconstruction/test/test_sadeltabeta.py +0 -74
tomwer/core/process/visualization/liveslice.py +0 -6
tomwer/core/progress.py +0 -100
tomwer/core/scan/test/test_edf.py +0 -53
tomwer/core/scan/test/test_future_scan.py +0 -61
tomwer/core/scan/test/test_h5.py +0 -96
tomwer/core/test/test_scanutils.py +0 -53
tomwer/gui/control/emailnotifier.py +0 -174
tomwer/gui/control/serie/seriewaiter.py +0 -28
tomwer/gui/control/test/__init__.py +0 -28
tomwer/gui/control/test/test_datalist.py +0 -96
tomwer/gui/control/test/test_datavalidator.py +0 -54
tomwer/gui/control/test/test_email.py +0 -35
tomwer/gui/control/test/test_process_manager.py +0 -65
tomwer/gui/control/test/test_scanselector.py +0 -67
tomwer/gui/edit/test/__init__.py +0 -28
tomwer/gui/icat/gallery.py +0 -214
tomwer/gui/icat/publish.py +0 -187
tomwer/gui/reconstruction/axis/axis.py +0 -733
tomwer/gui/reconstruction/axis/radioaxis.py +0 -2467
tomwer/gui/stitching/stitching.py +0 -1388
tomwer/gui/test/__init__.py +0 -28
tomwer/gui/test/test_axis_gui.py +0 -34
tomwer/synctools/stacks/edit/darkflatpatch.py +0 -169
tomwer/synctools/stacks/edit/imagekeyeditor.py +0 -135
tomwer/third_part/WaitingOverlay.py +0 -110
tomwer-1.3.27-py3.11-nspkg.pth +0 -1
tomwer-1.3.27.dist-info/METADATA +0 -292
tomwer-1.3.27.dist-info/RECORD +0 -785
tomwer-1.3.27.dist-info/namespace_packages.txt +0 -1
/orangecontrib/tomwer/{widgets/edit/test → tests}/__init__.py +0 -0
{tomwer/core/process/control/test → orangecontrib/tomwer/tutorials/id16b}/__init__.py +0 -0
{tomwer/core/process/icat → orangecontrib/tomwer/widgets/cluster/tests}/__init__.py +0 -0
/orangecontrib/tomwer/widgets/control/icons/{tomoobjserie.png → tomoobjseries.png} +0 -0
{tomwer/core/process/reconstruction/test → orangecontrib/tomwer/widgets/control/tests}/__init__.py +0 -0
/orangecontrib/tomwer/widgets/{icat → dataportal}/icons/publish_processed_data.png +0 -0
/orangecontrib/tomwer/widgets/{icat → dataportal}/icons/publish_processed_data.svg +0 -0
{tomwer/core/process/test → orangecontrib/tomwer/widgets/debugtools/tests}/__init__.py +0 -0
{tomwer/core/scan/test → orangecontrib/tomwer/widgets/edit/tests}/__init__.py +0 -0
{tomwer/core/test → orangecontrib/tomwer/widgets/other/tests}/__init__.py +0 -0
{tomwer/gui/cluster/test → orangecontrib/tomwer/widgets/reconstruction/tests}/__init__.py +0 -0
{tomwer/gui/control/serie → orangecontrib/tomwer/widgets/stitching/tests}/__init__.py +0 -0
{tomwer/gui/icat → orangecontrib/tomwer/widgets/tests}/__init__.py +0 -0
{tomwer/gui/reconstruction/test → orangecontrib/tomwer/widgets/visualization/tests}/__init__.py +0 -0
/tomwer/{synctools/stacks/edit → app/stitching}/__init__.py +0 -0
/tomwer/{synctools/test → core/process/control/tests}/__init__.py +0 -0
/tomwer/core/process/control/{test → tests}/test_email.py +0 -0
/tomwer/core/process/control/{test → tests}/test_h52nx_process.py +0 -0
/tomwer/{third_part → core/process/drac}/__init__.py +0 -0
/tomwer/core/process/reconstruction/{test → tests}/test_axis_params.py +0 -0
/tomwer/core/process/reconstruction/{test → tests}/test_darkref_copy.py +0 -0
/tomwer/core/process/reconstruction/{test → tests}/test_paramsbase.py +0 -0
/tomwer/core/process/reconstruction/{test → tests}/test_utils.py +0 -0
/tomwer/core/scan/{test → tests}/test_scan.py +0 -0
/tomwer/gui/control/{serie → series}/nxtomoconcatenate.py +0 -0
/tomwer/gui/control/{test → tests}/test_datadiscovery.py +0 -0
/tomwer/gui/control/{test → tests}/test_reducedarkflat_selector.py +0 -0
/tomwer/gui/control/{test → tests}/test_single_tomo_obj.py +0 -0
{orangecontrib/tomwer/widgets/edit/test → tomwer/tests/orangecontrib/tomwer/widgets/edit/tests}/test_image_key_upgrader.py +0 -0
{tomwer-1.3.27.dist-info → tomwer-1.4.0rc0.dist-info}/top_level.txt +0 -0

tomwer-1.4.0rc0.dist-info/RECORD ADDED Viewed

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tomwer 1.3.27__py3-none-any.whl → 1.4.0rc0__py3-none-any.whl

tomwer 1.3.27py3-none-any.whl → 1.4.0rc0py3-none-any.whl