tomwer 1.3.27__py3-none-any.whl → 1.4.0rc0__py3-none-any.whl

tomwer/core/process/stitching/tests/test_metadataholder.py

@@ -0,0 +1,17 @@
+from tomwer.core.process.stitching.metadataholder import StitchingMetadata
+
+
+def test_to_dict_from_dict():
+    """Test conversion of StitchingMetadata from dict and to dict"""
+    metadata = StitchingMetadata(tomo_obj=None)
+    metadata._pixel_or_voxel_size = [12.3, 2.5, None]
+    metadata._pos_as_m = [None, 3.6, None]
+    metadata._pos_as_px = [5, 9, 8]
+
+    ddict = metadata.to_dict()
+    assert isinstance(ddict, dict)
+
+    loaded_metadata = StitchingMetadata.from_dict(ddict, tomo_obj=None)
+    assert loaded_metadata == metadata
+    assert loaded_metadata.to_dict() == ddict
+    assert isinstance(str(loaded_metadata), str)

tomwer/core/process/task.py

@@ -1,44 +1,14 @@
-# coding: utf-8
-# /*##########################################################################
-#
-# Copyright (c) 2016-2017 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-# ###########################################################################*/
 """
 Define the tomwer Task class.
 Insure connection with ewoks.
 All instances of tomwer Tasks should avoid gui import (as qt).
 """
 
-
-__author__ = ["H. Payno"]
-__license__ = "MIT"
-__date__ = "27/07/2021"
-
+from __future__ import annotations
 
 import logging
-import typing
 from collections import namedtuple
 from datetime import datetime
-from typing import Union
 
 import h5py
 import numpy
@@ -66,7 +36,7 @@ class BaseProcessInfo:
 
     def __init__(self, inputs=None):
         """
-        :param bool: return_dict: if True serialize (to_dict / from_dict functions) between each task
+        :param return_dict: if True serialize (to_dict / from_dict functions) between each task
         """
         if inputs is None:
             inputs = {}
@@ -86,7 +56,6 @@ class BaseProcessInfo:
         """
 
         :return: display the list of all managed keys and possible values
-        :rtype: str
         """
         # TODO: use argsparse instead of this dict ?
         raise NotImplementedError("BaseProcess is an abstract class")
@@ -94,7 +63,7 @@ class BaseProcessInfo:
     def get_output_value(self, key):
         """
 
-        :param str key:
+        :param key:
         :return:
         """
         assert type(key) is str
@@ -109,7 +78,7 @@ class BaseProcessInfo:
     def register_output(self, key, value):
         """
 
-        :param str key: name of the output
+        :param key: name of the output
         :param value: value of the output
         """
         self._output_values[key] = value
@@ -129,11 +98,10 @@ class BaseProcessInfo:
         """definition of the process"""
         raise NotImplementedError("Base class")
 
-    def get_configuration(self) -> Union[None, dict]:
+    def get_configuration(self) -> dict | None:
         """
 
         :return: configuration of the process
-        :rtype: dict
         """
         if self._settings is None:
             return None
@@ -149,10 +117,10 @@ class BaseProcessInfo:
         self,
         process_file: str,
         entry: str,
-        configuration: Union[dict, None],
-        results: Union[dict, None],
+        configuration: dict | None,
+        results: dict | None,
         process_index: int,
-        interpretations: Union[dict, None] = None,
+        interpretations: dict | None = None,
         overwrite: bool = True,
     ) -> None:
         """
@@ -160,19 +128,14 @@ class BaseProcessInfo:
         output data stored will be the one defined by the data_keys
 
         :param process_file: where to store the processing information
-        :type process_file: str
-        :param str entry: entry process
+        :param entry: entry process
         :param configuration: configuration of the process
-        :type configuration: Union[dict,None]
         :param results: result of the processing
-        :type: Union[dict,None]
         :param process_index: index of the process
-        :type process_index: int
-        :param bool overwrite: if True then overwrite the process if already
+        :param overwrite: if True then overwrite the process if already
                                exists
-        :param interpretations: for each result we can add a flag
+        :paramerpretations: for each result we can add a flag
                                 'interpretation'
-        :type interpretations: Union[None, dict
         """
         assert process_file is not None
         with FileLockerManager().get_lock(file_name=process_file):
@@ -194,11 +157,11 @@ class BaseProcessInfo:
     def _register_process(
         process_file: str,
         process,
-        entry: typing.Union[str, None],
-        configuration: Union[dict, None],
-        results: Union[dict, None],
+        entry: str | None,
+        configuration: dict | None,
+        results: dict | None,
         process_index: int,
-        interpretations: Union[dict, None] = None,
+        interpretations: dict | None = None,
         overwrite: bool = True,
     ) -> None:
         """
@@ -207,19 +170,14 @@ class BaseProcessInfo:
 
         :param process: process to record
         :param process_file: where to store the processing information
-        :type process_file: str
-        :param Union[str, None] entry: entry process
+        :param entry: entry process
         :param configuration: configuration of the process
-        :type configuration: Union[dict,None]
         :param results: result of the processing
-        :type: Union[dict,None]
         :param process_index: index of the process
-        :type process_index: int
-        :param bool overwrite: if True then overwrite the process if already
+        :param overwrite: if True then overwrite the process if already
                                exists
-        :param interpretations: for each result we can add a flag
+        :paramerpretations: for each result we can add a flag
                                 'interpretation'
-        :type interpretations: Union[None, dict
         """
         assert process_file is not None, "The process file should be defined"
         if interpretations is None:
@@ -345,7 +303,7 @@ class BaseProcessInfo:
     @staticmethod
     def get_most_recent_process(
         root_node: h5py.Group, process, version: str = None
-    ) -> Union[None, h5py.Group]:
+    ) -> h5py.Group | None:
         nodes = Task._get_process_nodes(
             root_node=root_node, process=process, version=version, depth=1
         )
@@ -371,10 +329,9 @@ class BaseProcessInfo:
     def get_processes_frm_type(process_file: str, process_type, entry=None) -> list:
         """
 
-        :param str process_file: file to read
+        :param process_file: file to read
         :param process_type: process type we are looking for
         :return: list of _process_desc(sequence_index, configuration, results)
-        :rtype: list
         """
         # retrieve process to load
         with open_hdf5(process_file) as h5f:

tomwer/core/process/{test → tests}/test_axis.py

@@ -1,32 +1,5 @@
 # coding: utf-8
-# /*##########################################################################
-#
-# Copyright (c) 2016-2017 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-# ###########################################################################*/
-
-__authors__ = ["H. Payno"]
-__license__ = "MIT"
-__date__ = "05/04/2019"
-
+from __future__ import annotations
 
 import os
 import shutil
@@ -44,7 +17,6 @@ from tomwer.core.process.task import Task
 from tomwer.core.scan.edfscan import EDFTomoScan
 from tomwer.core.scan.scanbase import TomwerScanBase
 from tomwer.core.utils.scanutils import MockEDF, MockNXtomo
-from tomwer.tests.datasets import TomwerCIDatasets
 
 from ..reconstruction.axis.axis import AxisTask
 
@@ -148,16 +120,6 @@ class TestAxis(unittest.TestCase):
         self.assertEqual(len(processes), 1)
         self.assertEqual(processes[0].results["center_of_rotation"], axis_value)
 
-        # make sure the process file can be loaded by an instance of AxisRP
-        new_axis_params = AxisRP()
-        new_axis_params.set_relative_value(-10000)
-        new_axis_params.set_position_frm_par_file(
-            file_path=scan.process_file, entry=None
-        )
-        self.assertEqual(
-            new_axis_params.relative_cor_value, scan.axis_params.relative_cor_value
-        )
-
     def test_process_saved_hdf5(self):
         """Test that if process is called, the tomwer.h5 file is created
         and is correctly saving information regarding the center of position
@@ -200,14 +162,6 @@ class TestAxis(unittest.TestCase):
         self.assertEqual(len(processes), 1)
         self.assertEqual(processes[0].results["center_of_rotation"], axis_value)
 
-        # make sure the process file can be loaded by an instance of AxisRP
-        new_axis_params = AxisRP()
-        new_axis_params.set_relative_value(-10000)
-        new_axis_params.set_position_frm_par_file(file_path=scan.process_file)
-        self.assertEqual(
-            new_axis_params.relative_cor_value, scan.axis_params.relative_cor_value
-        )
-
 
 class TestAxisRP(unittest.TestCase):
     """Test the class used for AxisProcess configuration"""
@@ -219,38 +173,6 @@ class TestAxisRP(unittest.TestCase):
     def tearDown(self):
         shutil.rmtree(self.tmp_folder)
 
-    def testSetPositionFromParFile(self):
-        """Test that the position can be managed from a par file"""
-        old_value = self.axis_rp.value_ref_tomwer
-
-        with self.assertRaises(ValueError):
-            self.axis_rp.set_position_frm_par_file("ghost_file.par", force=False)
-        self.assertEqual(self.axis_rp.value_ref_tomwer, old_value)
-
-        existing_empty_file = os.path.join(self.tmp_folder, "par_file.par")
-        with open(existing_empty_file, "w") as _file:
-            _file.write("toto")
-
-        with self.assertRaises(KeyError):
-            self.axis_rp.set_position_frm_par_file(existing_empty_file, force=False)
-        self.assertEqual(self.axis_rp.value_ref_tomwer, old_value)
-
-        valid_par_file = TomwerCIDatasets.get_dataset(
-            "edf_datasets/scan_3_/scan_3_slice.par"
-        )
-        assert os.path.isfile(valid_par_file)
-        self.axis_rp.set_position_frm_par_file(valid_par_file, force=False)
-        self.assertEqual(self.axis_rp.value_ref_tomwer, 1024.742042)
-
-        self.axis_rp.set_position_frm_par_file(existing_empty_file, force=True)
-        self.assertEqual(self.axis_rp.value_ref_tomwer, None)
-
-        self.axis_rp.set_position_frm_par_file("ghost_file.par", force=True)
-        self.assertEqual(self.axis_rp.value_ref_tomwer, None)
-
-        self.axis_rp.set_position_frm_par_file(valid_par_file, force=True)
-        self.assertEqual(self.axis_rp.value_ref_tomwer, 1024.742042)
-
 
 class TestSinogramAlgorithm(unittest.TestCase):
     def setUp(self) -> None:

tomwer/core/process/{test → tests}/test_conditions.py

@@ -1,32 +1,5 @@
 # coding: utf-8
-# /*##########################################################################
-#
-# Copyright (c) 2016-2017 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-# ###########################################################################*/
-
-__authors__ = ["H. Payno"]
-__license__ = "MIT"
-__date__ = "19/07/2018"
-
+from __future__ import annotations
 
 import shutil
 import tempfile

tomwer/core/process/{test → tests}/test_dark_and_flat.py

@@ -1,31 +1,5 @@
 # coding: utf-8
-# /*##########################################################################
-#
-# Copyright (c) 2016-2017 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-# ###########################################################################*/
-
-__authors__ = ["H. Payno"]
-__license__ = "MIT"
-__date__ = "05/04/2019"
+from __future__ import annotations
 
 
 import os

tomwer/core/process/{test → tests}/test_data_listener.py

@@ -1,31 +1,5 @@
 # coding: utf-8
-# /*##########################################################################
-#
-# Copyright (c) 2016-2017 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-# ###########################################################################*/
-
-__authors__ = ["H. Payno"]
-__license__ = "MIT"
-__date__ = "09/06/2020"
+from __future__ import annotations
 
 
 import os

tomwer/core/process/{test → tests}/test_data_transfer.py

@@ -1,31 +1,5 @@
 # coding: utf-8
-# /*##########################################################################
-#
-# Copyright (c) 2016-2017 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-# ###########################################################################*/
-
-__authors__ = ["H. Payno"]
-__license__ = "MIT"
-__date__ = "05/04/2019"
+from __future__ import annotations
 
 
 import gc
@@ -211,7 +185,7 @@ class TestBlissDataTransfer(unittest.TestCase):
 
 @pytest.mark.skipif(not RSyncManager().has_rsync(), reason="requires rsync")
 class NXTomoDataTransferBase(unittest.TestCase):
-    """Make sure we can transfer data from an NXTomo with linked dependancies"""
+    """Make sure we can transfer data from a NXtomo with linked dependancies"""
 
     def setUp(self) -> None:
         super().setUp()

tomwer/core/process/{test → tests}/test_data_watcher.py

@@ -1,31 +1,5 @@
 # coding: utf-8
-# /*##########################################################################
-#
-# Copyright (c) 2016-2017 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-# ###########################################################################*/
-
-__authors__ = ["H. Payno"]
-__license__ = "MIT"
-__date__ = "05/04/2019"
+from __future__ import annotations
 
 
 import os

tomwer/core/process/{test → tests}/test_nabu.py

@@ -1,31 +1,5 @@
 # coding: utf-8
-# /*##########################################################################
-# Copyright (C) 2016 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-#############################################################################*/
-
-__authors__ = ["H. Payno"]
-__license__ = "MIT"
-__date__ = "14/02/2020"
-
+from __future__ import annotations
 
 import os
 import shutil
@@ -36,7 +10,6 @@ from glob import glob
 from tomwer.core.process.reconstruction.axis import AxisRP
 from tomwer.core.process.reconstruction.nabu import nabuslices as nabu
 from tomwer.core.process.reconstruction.nabu import settings as nabu_settings
-from tomwer.core.process.reconstruction.nabu import utils as nabuutils
 from tomwer.core.process.reconstruction.nabu.nabuslices import NabuSliceMode
 from tomwer.core.scan.edfscan import EDFTomoScan
 from tomwer.core.scan.scanfactory import ScanFactory
@@ -59,10 +32,6 @@ class TestNabuDescUtils(unittest.TestCase):
     def tearDown(self) -> None:
         shutil.rmtree(self.scan.path)
 
-    def testResourcesDescriptor(self):
-        nabuutils.get_nabu_resources_desc(scan=self.scan, method="local")
-        nabuutils.get_nabu_resources_desc(scan=self.scan, method="slurm")
-
     def testDatasetDescriptor(self):
         self.scan.get_nabu_dataset_info()
 
@@ -433,7 +402,9 @@ class TestNabuAndAxis(unittest.TestCase):
         nabu_rotation_axis_value = self.get_saved_rotation_axis(nabu_conf_files[0])
         self.assertEqual(
             nabu_rotation_axis_value,
-            str(self.scan._axis_params.value_ref_tomwer + self.scan.dim_1 / 2.0),
+            str(
+                self.scan._axis_params.relative_cor_value + (self.scan.dim_1 - 1) / 2.0
+            ),
         )
 
 

tomwer/core/process/{test → tests}/test_normalization.py

@@ -1,30 +1,5 @@
 # coding: utf-8
-# /*##########################################################################
-# Copyright (C) 2016 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-#############################################################################*/
-
-__authors__ = ["H. Payno"]
-__license__ = "MIT"
-__date__ = "11/07/2021"
+from __future__ import annotations
 
 
 import shutil

tomwer/core/process/{test → tests}/test_timer.py

@@ -1,31 +1,5 @@
 # coding: utf-8
-# /*##########################################################################
-#
-# Copyright (c) 2016-2017 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-# ###########################################################################*/
-
-__authors__ = ["H. Payno"]
-__license__ = "MIT"
-__date__ = "05/04/2019"
+from __future__ import annotations
 
 
 import shutil