tomwer 1.3.26__py3-none-any.whl → 1.4.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (638) hide show
  1. orangecontrib/tomwer/orange/managedprocess.py +1 -29
  2. orangecontrib/tomwer/orange/settings.py +2 -28
  3. orangecontrib/tomwer/tests/TestAcquisition.py +220 -0
  4. orangecontrib/tomwer/tutorials/append_raw_darks_and_flats_frames_to_NXtomos.ows +2 -2
  5. orangecontrib/tomwer/tutorials/copy_reduced_darks_and_flats_meth1.ows +1 -1
  6. orangecontrib/tomwer/tutorials/{icat_publication.ows → drac_publication.ows} +7 -21
  7. orangecontrib/tomwer/tutorials/id16b/ID16b_full_volume.ows +22 -0
  8. orangecontrib/tomwer/tutorials/id16b/ID16b_insitu.ows +302 -0
  9. orangecontrib/tomwer/tutorials/id16b/ID16b_normalization.ows +218 -0
  10. orangecontrib/tomwer/tutorials/simple_volume_to_slurm_reconstruction.ows +29 -24
  11. orangecontrib/tomwer/tutorials/test_cor.ows +19 -0
  12. orangecontrib/tomwer/tutorials/volume_casting_on_slurm.ows +54 -0
  13. orangecontrib/tomwer/widgets/__init__.py +3 -5
  14. orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py +35 -54
  15. orangecontrib/tomwer/widgets/cluster/SlurmClusterOW.py +1 -31
  16. orangecontrib/tomwer/widgets/control/AdvancementOW.py +1 -29
  17. orangecontrib/tomwer/widgets/control/DataDiscoveryOW.py +5 -4
  18. orangecontrib/tomwer/widgets/control/DataListenerOW.py +1 -29
  19. orangecontrib/tomwer/widgets/control/DataSelectorOW.py +11 -30
  20. orangecontrib/tomwer/widgets/control/DataTransfertOW.py +2 -28
  21. orangecontrib/tomwer/widgets/control/DataValidatorOW.py +1 -28
  22. orangecontrib/tomwer/widgets/control/DataWatcherOW.py +1 -28
  23. orangecontrib/tomwer/widgets/control/EDF2NXTomomillOW.py +48 -51
  24. orangecontrib/tomwer/widgets/control/EmailOW.py +12 -2
  25. orangecontrib/tomwer/widgets/control/FilterOW.py +1 -28
  26. orangecontrib/tomwer/widgets/control/NXTomomillOW.py +37 -53
  27. orangecontrib/tomwer/widgets/control/NXtomoConcatenate.py +21 -20
  28. orangecontrib/tomwer/widgets/control/NotifierOW.py +9 -28
  29. orangecontrib/tomwer/widgets/control/ReduceDarkFlatSelectorOW.py +3 -2
  30. orangecontrib/tomwer/widgets/control/SingleTomoObjOW.py +1 -27
  31. orangecontrib/tomwer/widgets/control/TimerOW.py +9 -28
  32. orangecontrib/tomwer/widgets/control/TomoObjSeriesOW.py +58 -0
  33. orangecontrib/tomwer/widgets/control/VolumeSelector.py +8 -30
  34. orangecontrib/tomwer/widgets/control/icons/nxtomomill.svg +173 -119
  35. orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.png +0 -0
  36. orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.svg +55 -195
  37. orangecontrib/tomwer/widgets/control/icons/{tomoobjserie.svg → tomoobjseries.svg} +2 -2
  38. orangecontrib/tomwer/widgets/dataportal/PublishProcessedDataOW.py +172 -0
  39. orangecontrib/tomwer/widgets/{icat → dataportal}/__init__.py +2 -2
  40. orangecontrib/tomwer/widgets/debugtools/DatasetGeneratorOW.py +2 -29
  41. orangecontrib/tomwer/widgets/debugtools/ObjectInspectorOW.py +1 -29
  42. orangecontrib/tomwer/widgets/edit/DarkFlatPatchOW.py +48 -73
  43. orangecontrib/tomwer/widgets/edit/ImageKeyEditorOW.py +48 -75
  44. orangecontrib/tomwer/widgets/edit/ImageKeyUpgraderOW.py +5 -30
  45. orangecontrib/tomwer/widgets/edit/NXtomoEditorOW.py +51 -52
  46. orangecontrib/tomwer/widgets/other/PythonScriptOW.py +22 -10
  47. orangecontrib/tomwer/widgets/reconstruction/AxisOW.py +51 -60
  48. orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py +22 -68
  49. orangecontrib/tomwer/widgets/reconstruction/DarkRefAndCopyOW.py +3 -30
  50. orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py +21 -19
  51. orangecontrib/tomwer/widgets/reconstruction/NabuOW.py +7 -70
  52. orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py +41 -84
  53. orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py +15 -40
  54. orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py +13 -35
  55. orangecontrib/tomwer/widgets/reconstruction/SinoNormOW.py +2 -30
  56. orangecontrib/tomwer/widgets/stitching/ZStitchingConfigOW.py +11 -11
  57. orangecontrib/tomwer/widgets/utils.py +2 -29
  58. orangecontrib/tomwer/widgets/visualization/DataViewerOW.py +1 -27
  59. orangecontrib/tomwer/widgets/visualization/DiffViewerOW.py +1 -27
  60. orangecontrib/tomwer/widgets/visualization/NXtomoMetadataViewerOW.py +1 -1
  61. orangecontrib/tomwer/widgets/visualization/RadioStackOW.py +2 -28
  62. orangecontrib/tomwer/widgets/visualization/SampleMovedOW.py +1 -27
  63. orangecontrib/tomwer/widgets/visualization/SinogramViewerOW.py +1 -27
  64. orangecontrib/tomwer/widgets/visualization/SliceStackOW.py +2 -28
  65. tomwer/__init__.py +3 -28
  66. tomwer/__main__.py +8 -4
  67. tomwer/app/__init__.py +2 -0
  68. tomwer/app/axis.py +8 -10
  69. tomwer/app/canvas.py +23 -29
  70. tomwer/app/canvas_launcher/config.py +14 -102
  71. tomwer/app/canvas_launcher/environ.py +5 -8
  72. tomwer/app/canvas_launcher/mainwindow.py +175 -69
  73. tomwer/app/canvas_launcher/splash.py +1 -3
  74. tomwer/app/canvas_launcher/utils.py +47 -0
  75. tomwer/app/canvas_launcher/widgetsscheme.py +3 -10
  76. tomwer/app/diffframe.py +2 -0
  77. tomwer/app/imagekeyeditor.py +2 -1
  78. tomwer/app/imagekeyupgrader.py +2 -0
  79. tomwer/app/multicor.py +5 -2
  80. tomwer/app/multipag.py +16 -5
  81. tomwer/app/nabuapp.py +2 -1
  82. tomwer/app/nxtomoeditor.py +17 -12
  83. tomwer/app/patchrawdarkflat.py +2 -0
  84. tomwer/app/radiostack.py +3 -2
  85. tomwer/app/reducedarkflat.py +3 -0
  86. tomwer/app/samplemoved.py +2 -0
  87. tomwer/app/scanviewer.py +2 -0
  88. tomwer/app/sinogramviewer.py +2 -0
  89. tomwer/app/slicestack.py +11 -13
  90. tomwer/app/stitching/common.py +431 -0
  91. tomwer/app/stopdatalistener.py +3 -0
  92. tomwer/app/ystitching.py +26 -0
  93. tomwer/app/zstitching.py +8 -363
  94. tomwer/core/__init__.py +2 -28
  95. tomwer/core/cluster/__init__.py +3 -0
  96. tomwer/core/cluster/cluster.py +10 -26
  97. tomwer/core/futureobject.py +17 -43
  98. tomwer/core/log/__init__.py +2 -0
  99. tomwer/core/log/processlog.py +0 -28
  100. tomwer/core/process/cluster/supervisor.py +52 -34
  101. tomwer/core/process/conditions/filters.py +3 -28
  102. tomwer/core/process/control/datalistener/datalistener.py +7 -75
  103. tomwer/core/process/control/datalistener/rpcserver.py +8 -38
  104. tomwer/core/process/control/datawatcher/datawatcher.py +11 -40
  105. tomwer/core/process/control/datawatcher/datawatcherobserver.py +30 -64
  106. tomwer/core/process/control/datawatcher/datawatcherprocess.py +11 -32
  107. tomwer/core/process/control/datawatcher/edfdwprocess.py +2 -27
  108. tomwer/core/process/control/datawatcher/hdf5dwprocess.py +1 -26
  109. tomwer/core/process/control/datawatcher/status.py +1 -26
  110. tomwer/core/process/control/emailnotifier.py +11 -23
  111. tomwer/core/process/control/nxtomoconcatenate.py +20 -18
  112. tomwer/core/process/control/nxtomomill.py +9 -44
  113. tomwer/core/process/control/scanlist.py +0 -27
  114. tomwer/core/process/control/scantransfer.py +15 -13
  115. tomwer/core/process/control/scanvalidator.py +4 -30
  116. tomwer/core/process/control/{test → tests}/test_concatenate_nxtomos.py +5 -5
  117. tomwer/core/process/control/timer.py +1 -27
  118. tomwer/core/process/control/tomoobjseries.py +12 -0
  119. tomwer/core/process/drac/binning.py +37 -0
  120. tomwer/core/process/drac/dracbase.py +170 -0
  121. tomwer/core/process/drac/gallery.py +109 -0
  122. tomwer/core/process/drac/output.py +12 -0
  123. tomwer/core/process/drac/processeddataset.py +147 -0
  124. tomwer/core/process/drac/publish.py +118 -0
  125. tomwer/core/process/drac/rawdataset.py +142 -0
  126. tomwer/core/process/drac/tests/test_gallery.py +71 -0
  127. tomwer/core/process/drac/tests/test_icat_processed_dataset.py +80 -0
  128. tomwer/core/process/drac/tests/test_icat_raw_dataset.py +90 -0
  129. tomwer/core/process/edit/darkflatpatch.py +1 -28
  130. tomwer/core/process/edit/imagekeyeditor.py +4 -32
  131. tomwer/core/process/edit/nxtomoeditor.py +307 -0
  132. tomwer/core/process/edit/tests/test_darkflatpatch.py +243 -0
  133. tomwer/core/process/edit/tests/test_imagekey_editor.py +99 -0
  134. tomwer/core/process/output.py +9 -2
  135. tomwer/core/process/reconstruction/__init__.py +0 -26
  136. tomwer/core/process/reconstruction/axis/anglemode.py +1 -29
  137. tomwer/core/process/reconstruction/axis/axis.py +47 -804
  138. tomwer/core/process/reconstruction/axis/mode.py +89 -25
  139. tomwer/core/process/reconstruction/axis/params.py +131 -283
  140. tomwer/core/process/reconstruction/axis/projectiontype.py +0 -28
  141. tomwer/core/process/reconstruction/axis/side.py +8 -0
  142. tomwer/core/process/reconstruction/darkref/darkrefs.py +14 -39
  143. tomwer/core/process/reconstruction/darkref/darkrefscopy.py +7 -39
  144. tomwer/core/process/reconstruction/darkref/params.py +1 -28
  145. tomwer/core/process/reconstruction/nabu/castvolume.py +19 -34
  146. tomwer/core/process/reconstruction/nabu/nabucommon.py +18 -43
  147. tomwer/core/process/reconstruction/nabu/nabuscores.py +64 -68
  148. tomwer/core/process/reconstruction/nabu/nabuslices.py +63 -105
  149. tomwer/core/process/reconstruction/nabu/nabuvolume.py +44 -70
  150. tomwer/core/process/reconstruction/nabu/plane.py +10 -0
  151. tomwer/core/process/reconstruction/nabu/settings.py +1 -28
  152. tomwer/core/process/reconstruction/nabu/target.py +0 -28
  153. tomwer/core/process/reconstruction/nabu/test/test_castvolume.py +116 -0
  154. tomwer/core/process/reconstruction/nabu/test/test_nabu_utils.py +277 -0
  155. tomwer/core/process/reconstruction/nabu/test/test_nabunormalization.py +199 -0
  156. tomwer/core/process/reconstruction/nabu/utils.py +11 -60
  157. tomwer/core/process/reconstruction/normalization/normalization.py +2 -32
  158. tomwer/core/process/reconstruction/normalization/params.py +3 -35
  159. tomwer/core/process/reconstruction/output.py +14 -19
  160. tomwer/core/process/reconstruction/paramsbase.py +4 -33
  161. tomwer/core/process/reconstruction/saaxis/params.py +5 -33
  162. tomwer/core/process/reconstruction/saaxis/saaxis.py +22 -51
  163. tomwer/core/process/reconstruction/sadeltabeta/params.py +2 -31
  164. tomwer/core/process/reconstruction/sadeltabeta/sadeltabeta.py +18 -46
  165. tomwer/core/process/reconstruction/scores/params.py +9 -39
  166. tomwer/core/process/reconstruction/scores/scores.py +10 -42
  167. tomwer/core/process/reconstruction/tests/__init__.py +0 -0
  168. tomwer/core/process/reconstruction/tests/test_axis.py +46 -0
  169. tomwer/core/process/reconstruction/tests/test_darkref.py +33 -0
  170. tomwer/core/process/reconstruction/{test → tests}/test_saaxis.py +1 -27
  171. tomwer/core/process/reconstruction/tests/test_sadeltabeta.py +48 -0
  172. tomwer/core/process/reconstruction/{test → tests}/test_utils.py +4 -4
  173. tomwer/core/process/reconstruction/utils/cor.py +8 -4
  174. tomwer/core/process/script/python.py +1 -27
  175. tomwer/core/process/script/tests/test_script.py +41 -0
  176. tomwer/core/process/stitching/metadataholder.py +5 -4
  177. tomwer/core/process/stitching/nabustitcher.py +35 -5
  178. tomwer/core/process/stitching/tests/test_metadataholder.py +17 -0
  179. tomwer/core/process/task.py +20 -63
  180. tomwer/core/process/tests/__init__.py +0 -0
  181. tomwer/core/process/{test → tests}/test_conditions.py +1 -28
  182. tomwer/core/process/{test → tests}/test_dark_and_flat.py +1 -27
  183. tomwer/core/process/{test → tests}/test_data_listener.py +1 -27
  184. tomwer/core/process/{test → tests}/test_data_transfer.py +2 -28
  185. tomwer/core/process/{test → tests}/test_data_watcher.py +1 -27
  186. tomwer/core/process/{test → tests}/test_nabu.py +2 -33
  187. tomwer/core/process/{test → tests}/test_normalization.py +1 -26
  188. tomwer/core/process/{test → tests}/test_timer.py +1 -27
  189. tomwer/core/process/utils.py +2 -31
  190. tomwer/core/process/visualization/dataviewer.py +1 -26
  191. tomwer/core/process/visualization/diffviewer.py +1 -26
  192. tomwer/core/process/visualization/imagestackviewer.py +0 -26
  193. tomwer/core/process/visualization/radiostack.py +0 -26
  194. tomwer/core/process/visualization/samplemoved.py +0 -28
  195. tomwer/core/process/visualization/sinogramviewer.py +0 -27
  196. tomwer/core/process/visualization/slicestack.py +0 -28
  197. tomwer/core/process/visualization/tests/test_data_viewer.py +12 -0
  198. tomwer/core/process/visualization/tests/test_diff_viewer.py +12 -0
  199. tomwer/core/process/visualization/tests/test_image_stack_viewer.py +14 -0
  200. tomwer/core/process/visualization/tests/test_radio_stack.py +12 -0
  201. tomwer/core/process/visualization/tests/test_sample_moved.py +14 -0
  202. tomwer/core/process/visualization/tests/test_sinogram_viewer.py +13 -0
  203. tomwer/core/process/visualization/tests/test_slice_stack.py +13 -0
  204. tomwer/core/process/visualization/tests/test_volume_viewer.py +12 -0
  205. tomwer/core/process/visualization/volumeviewer.py +0 -29
  206. tomwer/core/scan/__init__.py +3 -27
  207. tomwer/core/scan/blissscan.py +5 -34
  208. tomwer/core/scan/edfscan.py +19 -53
  209. tomwer/core/scan/hdf5scan.py +2 -2
  210. tomwer/core/scan/nxtomoscan.py +48 -54
  211. tomwer/core/scan/scanbase.py +107 -203
  212. tomwer/core/scan/scanfactory.py +11 -41
  213. tomwer/core/scan/tests/__init__.py +0 -0
  214. tomwer/core/scan/tests/test_edf.py +25 -0
  215. tomwer/core/scan/tests/test_future_scan.py +35 -0
  216. tomwer/core/scan/tests/test_nxtomoscan.py +143 -0
  217. tomwer/core/scan/tests/test_process_registration.py +64 -0
  218. tomwer/core/settings.py +18 -40
  219. tomwer/core/tests/__init__.py +0 -0
  220. tomwer/core/tests/test_scanutils.py +26 -0
  221. tomwer/core/{test → tests}/test_utils.py +1 -28
  222. tomwer/core/tomwer_object.py +4 -0
  223. tomwer/core/utils/__init__.py +2 -0
  224. tomwer/core/utils/char.py +0 -28
  225. tomwer/core/utils/deprecation.py +12 -38
  226. tomwer/core/utils/dictutils.py +1 -3
  227. tomwer/core/utils/ftseriesutils.py +1 -27
  228. tomwer/core/utils/gpu.py +0 -28
  229. tomwer/core/utils/image.py +8 -39
  230. tomwer/core/utils/locker.py +1 -28
  231. tomwer/core/utils/logconfig.py +0 -27
  232. tomwer/core/utils/normalization.py +4 -31
  233. tomwer/core/utils/nxtomoutils.py +8 -38
  234. tomwer/core/utils/resource.py +0 -26
  235. tomwer/core/utils/scanutils.py +23 -52
  236. tomwer/core/utils/slurm.py +7 -30
  237. tomwer/core/utils/spec.py +6 -6
  238. tomwer/core/utils/tests/__init__.py +0 -0
  239. tomwer/core/utils/tests/test_image.py +30 -0
  240. tomwer/core/utils/tests/test_nxtomo.py +38 -0
  241. tomwer/core/utils/tests/test_scan_utils.py +46 -0
  242. tomwer/core/utils/tests/test_time.py +6 -0
  243. tomwer/core/utils/threads.py +0 -26
  244. tomwer/core/utils/time.py +0 -27
  245. tomwer/core/volume/__init__.py +4 -0
  246. tomwer/core/volume/edfvolume.py +1 -28
  247. tomwer/core/volume/hdf5volume.py +1 -28
  248. tomwer/core/volume/jp2kvolume.py +1 -27
  249. tomwer/core/volume/rawvolume.py +1 -28
  250. tomwer/core/volume/tests/test_volumes.py +21 -0
  251. tomwer/core/volume/tiffvolume.py +1 -28
  252. tomwer/core/volume/volumebase.py +5 -0
  253. tomwer/core/volume/volumefactory.py +7 -33
  254. tomwer/gui/__init__.py +0 -28
  255. tomwer/gui/cluster/__init__.py +2 -0
  256. tomwer/gui/cluster/slurm.py +297 -95
  257. tomwer/gui/cluster/supervisor.py +1 -27
  258. tomwer/gui/cluster/tests/__init__.py +0 -0
  259. tomwer/gui/cluster/{test → tests}/test_cluster.py +21 -26
  260. tomwer/gui/cluster/{test → tests}/test_supervisor.py +1 -27
  261. tomwer/gui/conditions/__init__.py +2 -0
  262. tomwer/gui/conditions/filter.py +1 -26
  263. tomwer/gui/configuration/__init__.py +2 -0
  264. tomwer/gui/control/__init__.py +2 -0
  265. tomwer/gui/control/actions.py +2 -28
  266. tomwer/gui/control/datadiscovery.py +4 -3
  267. tomwer/gui/control/datalist.py +64 -69
  268. tomwer/gui/control/datalistener.py +1 -39
  269. tomwer/gui/control/datareacheractions.py +1 -28
  270. tomwer/gui/control/datatransfert.py +2 -29
  271. tomwer/gui/control/datavalidator.py +3 -37
  272. tomwer/gui/control/datawatcher/__init__.py +0 -28
  273. tomwer/gui/control/datawatcher/configuration.py +1 -28
  274. tomwer/gui/control/datawatcher/datawatcher.py +3 -32
  275. tomwer/gui/control/datawatcher/datawatcherobserver.py +2 -28
  276. tomwer/gui/control/history.py +5 -35
  277. tomwer/gui/control/nxtomomill.py +3 -30
  278. tomwer/gui/control/observations.py +61 -55
  279. tomwer/gui/control/reducedarkflatselector.py +24 -20
  280. tomwer/gui/control/scanselectorwidget.py +2 -28
  281. tomwer/gui/control/selectorwidgetbase.py +17 -17
  282. tomwer/gui/control/series/__init__.py +0 -0
  283. tomwer/gui/control/{serie/seriecreator.py → series/seriescreator.py} +214 -235
  284. tomwer/gui/control/series/serieswaiter.py +0 -0
  285. tomwer/gui/control/series/test/test_creator.py +424 -0
  286. tomwer/gui/control/series/test/test_nxtomo_concatenate.py +21 -0
  287. tomwer/gui/control/singletomoobj.py +1 -1
  288. tomwer/gui/control/tests/__init__.py +0 -0
  289. tomwer/gui/control/tests/test_datalist.py +47 -0
  290. tomwer/gui/control/{test → tests}/test_datalistener.py +1 -28
  291. tomwer/gui/control/tests/test_datavalidator.py +27 -0
  292. tomwer/gui/control/{test → tests}/test_inputwidget.py +1 -27
  293. tomwer/gui/control/tests/test_process_manager.py +38 -0
  294. tomwer/gui/control/tests/test_scan_observations.py +23 -0
  295. tomwer/gui/control/tests/test_scanselector.py +42 -0
  296. tomwer/gui/control/{test → tests}/test_scanvalidator.py +1 -27
  297. tomwer/gui/control/{test → tests}/test_volume_dialog.py +2 -30
  298. tomwer/gui/control/{test → tests}/test_volumeselector.py +1 -27
  299. tomwer/gui/control/volumeselectorwidget.py +2 -30
  300. tomwer/gui/dataportal/__init__.py +2 -0
  301. tomwer/gui/{icat → dataportal}/createscreenshots.py +3 -2
  302. tomwer/gui/dataportal/gallery.py +133 -0
  303. tomwer/gui/dataportal/outputformat.py +0 -0
  304. tomwer/gui/dataportal/publish.py +96 -0
  305. tomwer/gui/dataportal/tests/test_create_screenshots_gui.py +23 -0
  306. tomwer/gui/dataportal/tests/test_gallery_gui.py +21 -0
  307. tomwer/gui/debugtools/__init__.py +2 -0
  308. tomwer/gui/debugtools/datasetgenerator.py +1 -30
  309. tomwer/gui/debugtools/objectinspector.py +1 -29
  310. tomwer/gui/dialog/QDataDialog.py +89 -0
  311. tomwer/gui/{qfolderdialog.py → dialog/QVolumeDialog.py} +8 -107
  312. tomwer/gui/dialog/__init__.py +1 -0
  313. tomwer/gui/edit/__init__.py +2 -0
  314. tomwer/gui/edit/dkrfpatch.py +52 -87
  315. tomwer/gui/edit/imagekeyeditor.py +18 -54
  316. tomwer/gui/edit/nxtomoeditor.py +113 -300
  317. tomwer/gui/edit/nxtomowarmer.py +3 -2
  318. tomwer/gui/edit/tests/__init__.py +0 -0
  319. tomwer/gui/edit/{test → tests}/test_dkrf_patch.py +3 -29
  320. tomwer/gui/edit/{test → tests}/test_image_key_editor.py +1 -27
  321. tomwer/gui/edit/{test → tests}/test_nx_editor.py +45 -23
  322. tomwer/gui/fonts.py +5 -0
  323. tomwer/gui/icons.py +28 -66
  324. tomwer/gui/illustrations.py +4 -34
  325. tomwer/gui/imagefromfile.py +5 -30
  326. tomwer/gui/metadataloader.py +36 -0
  327. tomwer/gui/qconfigfile.py +3 -0
  328. tomwer/gui/qlefilesystem.py +3 -0
  329. tomwer/gui/reconstruction/__init__.py +2 -0
  330. tomwer/gui/reconstruction/axis/AxisMainWindow.py +275 -0
  331. tomwer/gui/reconstruction/axis/AxisOptionsWidget.py +313 -0
  332. tomwer/gui/reconstruction/axis/AxisSettingsWidget.py +797 -0
  333. tomwer/gui/reconstruction/axis/AxisWidget.py +534 -0
  334. tomwer/gui/reconstruction/axis/CalculationWidget.py +218 -0
  335. tomwer/gui/reconstruction/axis/CompareImages.py +11 -44
  336. tomwer/gui/reconstruction/axis/ControlWidget.py +285 -0
  337. tomwer/gui/reconstruction/axis/EstimatedCORWidget.py +394 -0
  338. tomwer/gui/reconstruction/axis/EstimatedCorComboBox.py +118 -0
  339. tomwer/gui/reconstruction/axis/InputWidget.py +347 -0
  340. tomwer/gui/reconstruction/axis/ManualFramesSelection.py +168 -0
  341. tomwer/gui/reconstruction/axis/__init__.py +2 -2
  342. tomwer/gui/reconstruction/darkref/__init__.py +0 -27
  343. tomwer/gui/reconstruction/darkref/darkrefcopywidget.py +5 -34
  344. tomwer/gui/reconstruction/darkref/darkrefwidget.py +1 -27
  345. tomwer/gui/reconstruction/nabu/castvolume.py +40 -59
  346. tomwer/gui/reconstruction/nabu/check.py +7 -33
  347. tomwer/gui/reconstruction/nabu/nabuconfig/base.py +7 -34
  348. tomwer/gui/reconstruction/nabu/nabuconfig/ctf.py +6 -5
  349. tomwer/gui/reconstruction/nabu/nabuconfig/nabuconfig.py +10 -69
  350. tomwer/gui/reconstruction/nabu/nabuconfig/output.py +3 -47
  351. tomwer/gui/reconstruction/nabu/nabuconfig/phase.py +54 -36
  352. tomwer/gui/reconstruction/nabu/nabuconfig/preprocessing.py +103 -54
  353. tomwer/gui/reconstruction/nabu/nabuconfig/reconstruction.py +116 -65
  354. tomwer/gui/reconstruction/nabu/nabuflow.py +31 -61
  355. tomwer/gui/reconstruction/nabu/platform.py +94 -0
  356. tomwer/gui/reconstruction/nabu/slices.py +81 -45
  357. tomwer/gui/reconstruction/nabu/slurm.py +1 -27
  358. tomwer/gui/reconstruction/nabu/test/test_cast_volume.py +82 -0
  359. tomwer/gui/reconstruction/nabu/test/test_check.py +66 -0
  360. tomwer/gui/reconstruction/nabu/test/test_ctf.py +46 -0
  361. tomwer/gui/reconstruction/nabu/test/test_helical.py +21 -0
  362. tomwer/gui/reconstruction/nabu/test/test_nabu_preprocessing.py +81 -0
  363. tomwer/gui/reconstruction/nabu/volume.py +62 -90
  364. tomwer/gui/reconstruction/normalization/intensity.py +5 -32
  365. tomwer/gui/reconstruction/normalization/test/test_intensity.py +89 -0
  366. tomwer/gui/reconstruction/saaxis/corrangeselector.py +32 -56
  367. tomwer/gui/reconstruction/saaxis/dimensionwidget.py +56 -96
  368. tomwer/gui/reconstruction/saaxis/saaxis.py +17 -38
  369. tomwer/gui/reconstruction/saaxis/sliceselector.py +8 -39
  370. tomwer/gui/reconstruction/sadeltabeta/saadeltabeta.py +19 -37
  371. tomwer/gui/reconstruction/scores/control.py +2 -30
  372. tomwer/gui/reconstruction/scores/scoreplot.py +23 -49
  373. tomwer/gui/reconstruction/tests/__init__.py +0 -0
  374. tomwer/gui/reconstruction/{test → tests}/test_axis.py +23 -49
  375. tomwer/gui/reconstruction/{test → tests}/test_nabu.py +16 -31
  376. tomwer/gui/reconstruction/{test → tests}/test_saaxis.py +10 -37
  377. tomwer/gui/reconstruction/{test → tests}/test_sadeltabeta.py +1 -26
  378. tomwer/gui/samplemoved/__init__.py +2 -30
  379. tomwer/gui/samplemoved/selectiontable.py +3 -33
  380. tomwer/gui/settings.py +7 -0
  381. tomwer/gui/stackplot.py +33 -661
  382. tomwer/gui/stacks.py +261 -135
  383. tomwer/gui/stitching/SingleAxisStitchingWidget.py +326 -0
  384. tomwer/gui/stitching/StitchingOptionsWidget.py +438 -0
  385. tomwer/gui/stitching/StitchingWindow.py +586 -0
  386. tomwer/gui/stitching/__init__.py +2 -0
  387. tomwer/gui/stitching/alignment.py +90 -0
  388. tomwer/gui/stitching/axisorderedlist.py +44 -34
  389. tomwer/gui/stitching/config/axisparams.py +25 -11
  390. tomwer/gui/stitching/config/output.py +6 -5
  391. tomwer/gui/stitching/config/positionoveraxis.py +313 -51
  392. tomwer/gui/stitching/config/stitchingstrategies.py +22 -16
  393. tomwer/gui/stitching/config/tests/test_axisparams.py +25 -0
  394. tomwer/gui/stitching/config/tomoobjdetails.py +3 -5
  395. tomwer/gui/stitching/normalization.py +1 -0
  396. tomwer/gui/stitching/preview.py +59 -0
  397. tomwer/gui/stitching/singleaxis.py +57 -0
  398. tomwer/gui/stitching/stitchandbackground.py +3 -2
  399. tomwer/gui/stitching/stitching_preview.py +44 -36
  400. tomwer/gui/stitching/stitching_raw.py +5 -3
  401. tomwer/gui/stitching/tests/test_ZStitchingWindow.py +88 -0
  402. tomwer/gui/stitching/tests/test_axis_ordered_list.py +21 -0
  403. tomwer/gui/stitching/tests/test_normalization.py +27 -0
  404. tomwer/gui/stitching/tests/test_preview.py +68 -0
  405. tomwer/gui/stitching/tests/test_stitching_raw.py +110 -0
  406. tomwer/gui/stitching/tests/utils.py +92 -0
  407. tomwer/gui/stitching/utils.py +14 -0
  408. tomwer/gui/stitching/z_stitching/fineestimation.py +5 -33
  409. tomwer/gui/stitching/z_stitching/tests/test_fine_estimation.py +35 -0
  410. tomwer/gui/stitching/z_stitching/tests/test_raw_estimation.py +215 -0
  411. tomwer/gui/stitching/z_stitching/tests/test_stitching_window.py +51 -0
  412. tomwer/gui/tests/__init__.py +0 -0
  413. tomwer/gui/tests/test_axis_gui.py +43 -0
  414. tomwer/gui/{test → tests}/test_qfolder_dialog.py +1 -1
  415. tomwer/gui/utils/RangeWidget.py +44 -0
  416. tomwer/gui/utils/buttons.py +4 -3
  417. tomwer/gui/utils/completer.py +2 -33
  418. tomwer/gui/utils/flow.py +11 -40
  419. tomwer/gui/utils/gpu.py +60 -0
  420. tomwer/gui/utils/illustrations.py +1 -26
  421. tomwer/gui/utils/inputwidget.py +35 -73
  422. tomwer/gui/utils/lineselector/lineselector.py +9 -46
  423. tomwer/gui/utils/loadingmode.py +81 -0
  424. tomwer/gui/utils/qt_utils.py +9 -0
  425. tomwer/gui/utils/sandboxes.py +1 -26
  426. tomwer/gui/utils/scandescription.py +2 -31
  427. tomwer/gui/utils/scrollarea.py +6 -55
  428. tomwer/gui/utils/slider.py +4 -28
  429. tomwer/gui/utils/splashscreen.py +0 -28
  430. tomwer/gui/utils/step.py +14 -13
  431. tomwer/gui/utils/tests/test_completer.py +41 -0
  432. tomwer/gui/utils/tests/test_line_selector.py +21 -0
  433. tomwer/gui/utils/tests/test_splashscreen.py +8 -0
  434. tomwer/gui/utils/tests/test_vignettes.py +68 -0
  435. tomwer/gui/utils/unitsystem.py +15 -69
  436. tomwer/gui/utils/utils.py +4 -5
  437. tomwer/gui/utils/vignettes.py +10 -41
  438. tomwer/gui/utils/waiterthread.py +0 -26
  439. tomwer/gui/visualization/__init__.py +2 -0
  440. tomwer/gui/visualization/dataviewer.py +68 -421
  441. tomwer/gui/visualization/diffviewer/diffviewer.py +2 -30
  442. tomwer/gui/visualization/diffviewer/shiftwidget.py +4 -29
  443. tomwer/gui/visualization/fullscreenplot.py +5 -5
  444. tomwer/gui/visualization/imagestack.py +403 -0
  445. tomwer/gui/visualization/nxtomometadata.py +0 -4
  446. tomwer/gui/visualization/reconstructionparameters.py +14 -32
  447. tomwer/gui/visualization/scanoverview.py +33 -66
  448. tomwer/gui/visualization/sinogramviewer.py +2 -28
  449. tomwer/gui/visualization/test/__init__.py +0 -28
  450. tomwer/gui/visualization/test/test_dataviewer.py +1 -28
  451. tomwer/gui/visualization/test/test_diffviewer.py +1 -28
  452. tomwer/gui/visualization/test/test_nx_tomo_metadata_viewer.py +0 -5
  453. tomwer/gui/visualization/test/test_reconstruction_parameters.py +1 -27
  454. tomwer/gui/visualization/test/test_sinogramviewer.py +1 -28
  455. tomwer/gui/visualization/test/test_stacks.py +184 -115
  456. tomwer/gui/visualization/test/test_volumeviewer.py +3 -2
  457. tomwer/gui/visualization/tomoobjoverview.py +2 -2
  458. tomwer/gui/visualization/volumeoverview.py +3 -2
  459. tomwer/gui/visualization/volumeviewer.py +47 -43
  460. tomwer/io/__init__.py +2 -0
  461. tomwer/io/utils/h5pyutils.py +1 -27
  462. tomwer/io/utils/test/test_raw_and_processed_data.py +10 -0
  463. tomwer/io/utils/test/test_utils.py +67 -0
  464. tomwer/io/utils/utils.py +2 -31
  465. tomwer/resources/__init__.py +13 -33
  466. tomwer/resources/gui/icons/edit_downstream.svg +114 -0
  467. tomwer/resources/gui/icons/edit_upstream.svg +112 -0
  468. tomwer/resources/gui/icons/free_edition.svg +23 -0
  469. tomwer/resources/gui/icons/icat_gallery_opts.png +0 -0
  470. tomwer/resources/gui/icons/icat_gallery_opts.svg +80 -0
  471. tomwer/resources/gui/icons/search.png +0 -0
  472. tomwer/resources/gui/icons/search.svg +23 -0
  473. tomwer/resources/gui/icons/warning.png +0 -0
  474. tomwer/synctools/__init__.py +2 -0
  475. tomwer/synctools/axis.py +1 -27
  476. tomwer/synctools/darkref.py +1 -26
  477. tomwer/synctools/datalistener.py +1 -27
  478. tomwer/synctools/datatransfert.py +2 -27
  479. tomwer/synctools/imageloaderthread.py +1 -28
  480. tomwer/synctools/rsyncmanager.py +1 -25
  481. tomwer/synctools/saaxis.py +1 -26
  482. tomwer/synctools/sadeltabeta.py +1 -26
  483. tomwer/synctools/stacks/control/datalistener.py +1 -26
  484. tomwer/synctools/stacks/processingstack.py +4 -33
  485. tomwer/synctools/stacks/reconstruction/axis.py +6 -53
  486. tomwer/synctools/stacks/reconstruction/castvolume.py +12 -43
  487. tomwer/synctools/stacks/reconstruction/dkrefcopy.py +4 -27
  488. tomwer/synctools/stacks/reconstruction/nabu.py +3 -28
  489. tomwer/synctools/stacks/reconstruction/normalization.py +2 -27
  490. tomwer/synctools/stacks/reconstruction/saaxis.py +2 -27
  491. tomwer/synctools/stacks/reconstruction/sadeltabeta.py +2 -27
  492. tomwer/synctools/tests/__init__.py +0 -0
  493. tomwer/synctools/{test → tests}/test_darkRefs.py +16 -40
  494. tomwer/synctools/{test → tests}/test_foldertransfer.py +2 -33
  495. tomwer/synctools/utils/scanstages.py +2 -31
  496. tomwer/tests/__init__.py +1 -0
  497. tomwer/tests/app/test_stitching.py +95 -0
  498. tomwer/tests/datasets.py +1 -5
  499. tomwer/tests/orangecontrib/tomwer/widgets/cluster/tests/test_future_supervisorow.py +48 -0
  500. tomwer/tests/orangecontrib/tomwer/widgets/cluster/tests/test_slurm_clusterow.py +40 -0
  501. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_advancement.py +8 -0
  502. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_data_validator.py +55 -0
  503. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datadiscovery.py +129 -0
  504. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datalistener.py +111 -0
  505. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_dataselector.py +69 -0
  506. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datawatcher.py +411 -0
  507. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_emailow.py +29 -0
  508. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_notifier.py +24 -0
  509. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_nxtomo_concatenate_ow.py +64 -0
  510. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_nxtomomill.py +133 -0
  511. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_reduce_dark_flat_selector.py +40 -0
  512. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_singletomoobj.py +40 -0
  513. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_timerow.py +25 -0
  514. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_tomoobj_series.py +96 -0
  515. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_volume_selector.py +69 -0
  516. orangecontrib/tomwer/widgets/edit/test/test_image_key_editor.py → tomwer/tests/orangecontrib/tomwer/widgets/debugtools/tests/test_dataset_generator.py +17 -16
  517. tomwer/tests/orangecontrib/tomwer/widgets/debugtools/tests/test_object_inspector.py +36 -0
  518. {orangecontrib/tomwer/widgets/edit/test → tomwer/tests/orangecontrib/tomwer/widgets/edit/tests}/test_dark_flat_patch.py +1 -27
  519. tomwer/tests/orangecontrib/tomwer/widgets/edit/tests/test_image_key_editor.py +30 -0
  520. tomwer/tests/orangecontrib/tomwer/widgets/edit/tests/test_nxtomo_editor.py +138 -0
  521. tomwer/tests/orangecontrib/tomwer/widgets/other/tests/test_pythonscript.py +31 -0
  522. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_axis.py +199 -0
  523. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_cast_volumeow.py +58 -0
  524. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_dark_refs_widget.py +136 -0
  525. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_delta_beta_selector.py +15 -0
  526. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_i_norm.py +200 -0
  527. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_helical_prepare_weights_double.py +20 -0
  528. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_volume.py +74 -0
  529. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_widget.py +107 -0
  530. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_sa_delta_beta.py +194 -0
  531. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_saaxis.py +194 -0
  532. tomwer/tests/orangecontrib/tomwer/widgets/stitching/tests/test_zstitching.py +313 -0
  533. tomwer/tests/orangecontrib/tomwer/widgets/tests/test_conditions.py +85 -0
  534. tomwer/tests/orangecontrib/tomwer/widgets/tests/test_darkref.py +225 -0
  535. tomwer/tests/orangecontrib/tomwer/widgets/tests/test_foldertransfert.py +105 -0
  536. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_dataviewerow.py +57 -0
  537. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_diffviewerow.py +39 -0
  538. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_nxtomo_metadata_viewer.py +29 -0
  539. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_radio_stackow.py +31 -0
  540. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_sample_movedow.py +46 -0
  541. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_sinogram_viewerow.py +31 -0
  542. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_slice_stackow.py +31 -0
  543. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_volume_viewerow.py +32 -0
  544. tomwer/tests/test_ewoks/test_conversion.py +104 -0
  545. tomwer/tests/test_ewoks/test_single_node_execution.py +87 -0
  546. tomwer/tests/test_ewoks/test_workflows.py +138 -0
  547. tomwer/utils.py +11 -39
  548. tomwer/version.py +2 -2
  549. {tomwer-1.3.26.dist-info → tomwer-1.4.0.dist-info}/LICENSE +3 -3
  550. tomwer-1.4.0.dist-info/METADATA +337 -0
  551. tomwer-1.4.0.dist-info/RECORD +912 -0
  552. {tomwer-1.3.26.dist-info → tomwer-1.4.0.dist-info}/WHEEL +1 -1
  553. {tomwer-1.3.26.dist-info → tomwer-1.4.0.dist-info}/entry_points.txt +1 -0
  554. orangecontrib/tomwer/widgets/control/DataListOW.py +0 -129
  555. orangecontrib/tomwer/widgets/control/TomoObjSerieOW.py +0 -86
  556. orangecontrib/tomwer/widgets/control/VolumeSymLinkOW.py +0 -182
  557. orangecontrib/tomwer/widgets/edit/test/test_nxtomo_editor.py +0 -141
  558. orangecontrib/tomwer/widgets/icat/PublishProcessedDataOW.py +0 -115
  559. orangecontrib/tomwer/widgets/icat/RawDataScreenshotCreatorOW.py +0 -98
  560. orangecontrib/tomwer/widgets/icat/SaveToGalleryAndPublishOW.py +0 -129
  561. orangecontrib/tomwer/widgets/icat/icons/add_gallery.png +0 -0
  562. orangecontrib/tomwer/widgets/icat/icons/add_gallery.svg +0 -82
  563. orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.png +0 -0
  564. orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.svg +0 -143
  565. orangecontrib/tomwer/widgets/visualization/LivesliceOW.py +0 -87
  566. orangecontrib/tomwer/widgets/visualization/icons/liveslice.png +0 -0
  567. orangecontrib/tomwer/widgets/visualization/icons/liveslice.svg +0 -110
  568. tomwer/core/log/logger.py +0 -130
  569. tomwer/core/process/control/test/test_volume_link.py +0 -74
  570. tomwer/core/process/control/tomoobjserie.py +0 -12
  571. tomwer/core/process/control/volumesymlink.py +0 -200
  572. tomwer/core/process/icat/createscreenshots.py +0 -100
  573. tomwer/core/process/icat/gallery.py +0 -377
  574. tomwer/core/process/icat/icatbase.py +0 -36
  575. tomwer/core/process/icat/publish.py +0 -228
  576. tomwer/core/process/icat/screenshots.py +0 -27
  577. tomwer/core/process/reconstruction/test/test_darkref.py +0 -60
  578. tomwer/core/process/reconstruction/test/test_sadeltabeta.py +0 -74
  579. tomwer/core/process/test/test_axis.py +0 -309
  580. tomwer/core/process/visualization/liveslice.py +0 -6
  581. tomwer/core/progress.py +0 -100
  582. tomwer/core/scan/test/test_edf.py +0 -53
  583. tomwer/core/scan/test/test_future_scan.py +0 -61
  584. tomwer/core/scan/test/test_h5.py +0 -96
  585. tomwer/core/scan/test/test_process_registration.py +0 -109
  586. tomwer/core/test/test_scanutils.py +0 -53
  587. tomwer/gui/control/emailnotifier.py +0 -174
  588. tomwer/gui/control/serie/seriewaiter.py +0 -28
  589. tomwer/gui/control/test/__init__.py +0 -28
  590. tomwer/gui/control/test/test_datalist.py +0 -96
  591. tomwer/gui/control/test/test_datavalidator.py +0 -54
  592. tomwer/gui/control/test/test_email.py +0 -35
  593. tomwer/gui/control/test/test_process_manager.py +0 -65
  594. tomwer/gui/control/test/test_scanselector.py +0 -67
  595. tomwer/gui/edit/test/__init__.py +0 -28
  596. tomwer/gui/icat/gallery.py +0 -214
  597. tomwer/gui/icat/publish.py +0 -187
  598. tomwer/gui/reconstruction/axis/axis.py +0 -733
  599. tomwer/gui/reconstruction/axis/radioaxis.py +0 -2467
  600. tomwer/gui/stitching/stitching.py +0 -1392
  601. tomwer/gui/test/__init__.py +0 -28
  602. tomwer/gui/test/test_axis_gui.py +0 -34
  603. tomwer/synctools/stacks/edit/darkflatpatch.py +0 -169
  604. tomwer/synctools/stacks/edit/imagekeyeditor.py +0 -135
  605. tomwer/third_part/WaitingOverlay.py +0 -110
  606. tomwer-1.3.26-py3.11-nspkg.pth +0 -1
  607. tomwer-1.3.26.dist-info/METADATA +0 -292
  608. tomwer-1.3.26.dist-info/RECORD +0 -785
  609. tomwer-1.3.26.dist-info/namespace_packages.txt +0 -1
  610. /orangecontrib/tomwer/{widgets/edit/test → tests}/__init__.py +0 -0
  611. {tomwer/core/process/control/test → orangecontrib/tomwer/tutorials/id16b}/__init__.py +0 -0
  612. {tomwer/core/process/icat → orangecontrib/tomwer/widgets/cluster/tests}/__init__.py +0 -0
  613. /orangecontrib/tomwer/widgets/control/icons/{tomoobjserie.png → tomoobjseries.png} +0 -0
  614. {tomwer/core/process/reconstruction/test → orangecontrib/tomwer/widgets/control/tests}/__init__.py +0 -0
  615. /orangecontrib/tomwer/widgets/{icat → dataportal}/icons/publish_processed_data.png +0 -0
  616. /orangecontrib/tomwer/widgets/{icat → dataportal}/icons/publish_processed_data.svg +0 -0
  617. {tomwer/core/process/test → orangecontrib/tomwer/widgets/debugtools/tests}/__init__.py +0 -0
  618. {tomwer/core/scan/test → orangecontrib/tomwer/widgets/edit/tests}/__init__.py +0 -0
  619. {tomwer/core/test → orangecontrib/tomwer/widgets/other/tests}/__init__.py +0 -0
  620. {tomwer/gui/cluster/test → orangecontrib/tomwer/widgets/reconstruction/tests}/__init__.py +0 -0
  621. {tomwer/gui/control/serie → orangecontrib/tomwer/widgets/stitching/tests}/__init__.py +0 -0
  622. {tomwer/gui/icat → orangecontrib/tomwer/widgets/tests}/__init__.py +0 -0
  623. {tomwer/gui/reconstruction/test → orangecontrib/tomwer/widgets/visualization/tests}/__init__.py +0 -0
  624. /tomwer/{synctools/stacks/edit → app/stitching}/__init__.py +0 -0
  625. /tomwer/{synctools/test → core/process/control/tests}/__init__.py +0 -0
  626. /tomwer/core/process/control/{test → tests}/test_email.py +0 -0
  627. /tomwer/core/process/control/{test → tests}/test_h52nx_process.py +0 -0
  628. /tomwer/{third_part → core/process/drac}/__init__.py +0 -0
  629. /tomwer/core/process/reconstruction/{test → tests}/test_axis_params.py +0 -0
  630. /tomwer/core/process/reconstruction/{test → tests}/test_darkref_copy.py +0 -0
  631. /tomwer/core/process/reconstruction/{test → tests}/test_paramsbase.py +0 -0
  632. /tomwer/core/scan/{test → tests}/test_scan.py +0 -0
  633. /tomwer/gui/control/{serie → series}/nxtomoconcatenate.py +0 -0
  634. /tomwer/gui/control/{test → tests}/test_datadiscovery.py +0 -0
  635. /tomwer/gui/control/{test → tests}/test_reducedarkflat_selector.py +0 -0
  636. /tomwer/gui/control/{test → tests}/test_single_tomo_obj.py +0 -0
  637. {orangecontrib/tomwer/widgets/edit/test → tomwer/tests/orangecontrib/tomwer/widgets/edit/tests}/test_image_key_upgrader.py +0 -0
  638. {tomwer-1.3.26.dist-info → tomwer-1.4.0.dist-info}/top_level.txt +0 -0
tomwer-1.3.26.dist-info/METADATA DELETED
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- Name: tomwer
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- Version: 1.3.26
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- Summary: "tomography workflow tools"
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- Home-page: https://gitlab.esrf.fr/tomotools/tomwer
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- Author: data analysis unit
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- Author-email: henri.payno@esrf.fr
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- License: MIT
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- Project-URL: Bug Tracker, https://gitlab.esrf.fr/tomotools/tomwer/-/issues
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- Keywords: orange3 add-on,ewoks
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- Classifier: Intended Audience :: Education
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- Classifier: Intended Audience :: Science/Research
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- Classifier: License :: OSI Approved :: MIT License
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- Classifier: Programming Language :: Python :: 3
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- Classifier: Operating System :: POSIX
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- Classifier: Natural Language :: English
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- Classifier: Topic :: Scientific/Engineering :: Physics
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-
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- tomwer
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- ======
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-
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- tomwer is offering tools to automate acquisition and reconstruction processes for Tomography.
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- It contains:
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-
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- - a library to access each acquisition process individually
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- - gui and applications to control main processes (reconstruction, data transfert...) and execute them as a stand alone application.
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- - an orange add-on to help users defining their own workflow (http://orange.biolab.si)
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-
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- .. image:: http://www.edna-site.org/pub/doc/tomwer/extra/tomwer_start_short.gif
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-
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- .. |Gitlab Status| image:: https://gitlab.esrf.fr/tomotools/tomwer/badges/master/pipeline.svg
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- :target: https://gitlab.esrf.fr/tomotools/tomwer/pipelines
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-
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-
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- Documentation
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- -------------
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-
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- `Latest documentation <https://tomotools.gitlab-pages.esrf.fr/tomwer/>`_
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-
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-
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- Installation
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- ------------
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-
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- Step 1 - tomwer
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- '''''''''''''''
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-
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- To install it with all 'features':
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-
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- .. code-block:: bash
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-
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- pip install tomwer[full]
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-
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- alternatively you can install the master branch from
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-
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- .. code-block:: bash
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-
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- pip install git+https://gitlab.esrf.fr/tomotools/tomwer/#egg=tomwer[full]
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-
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- Step 2 - update orange-canvas-core and orange-widget-base (Optional)
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- ''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
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-
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- To access 'processing' wheels and 'reprocess action' you might want to install forks of update orange-canvas-core and orange-widget-base. This is optional and projects works with native orange projects
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-
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- .. code-block:: bash
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-
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- pip install git+https://github.com/payno/orange-canvas-core --no-deps --upgrade
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- pip install git+https://github.com/payno/orange-widget-base --no-deps --upgrade
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-
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-
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- Launching applications
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- ::::::::::::::::::::::
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- After the installation tomwer is embedding several applications.
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- Those applications can be launched by calling:
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-
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- .. code-block:: bash
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- tomwer appName {options}
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- .. note:: if you only call `tomwer` then the man page will be displayed.
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- .. note:: You can access each application help using ``
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- .. code-block:: bash
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- tomwer appName --help
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-
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- tomwer canvas - orange canvas
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- '''''''''''''''''''''''''''''
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- You can launch the canvas to create workflows from the different 'bricks'
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- .. code-block:: bash
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- tomwer canvas
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- .. note:: you can also use `orange-canvas`
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-
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- .. note:: if your installed a virtual environment do not forget to active it :
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- .. code-block:: bash
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- source myvirtualenv/bin/activate
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- Documentation
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- :::::::::::::
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- .. code-block:: bash
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- sphinx-build doc build/html
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- The documentation is build in doc/build/html and the entry point is index.html
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- .. code-block:: bash
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- firefox build/html/index.html
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- .. note:: the build of the documentation need sphinx to be installed. This is not an hard dependacy. So you might need to install it.