tomwer 1.3.26__py3-none-any.whl → 1.4.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (638) hide show
  1. orangecontrib/tomwer/orange/managedprocess.py +1 -29
  2. orangecontrib/tomwer/orange/settings.py +2 -28
  3. orangecontrib/tomwer/tests/TestAcquisition.py +220 -0
  4. orangecontrib/tomwer/tutorials/append_raw_darks_and_flats_frames_to_NXtomos.ows +2 -2
  5. orangecontrib/tomwer/tutorials/copy_reduced_darks_and_flats_meth1.ows +1 -1
  6. orangecontrib/tomwer/tutorials/{icat_publication.ows → drac_publication.ows} +7 -21
  7. orangecontrib/tomwer/tutorials/id16b/ID16b_full_volume.ows +22 -0
  8. orangecontrib/tomwer/tutorials/id16b/ID16b_insitu.ows +302 -0
  9. orangecontrib/tomwer/tutorials/id16b/ID16b_normalization.ows +218 -0
  10. orangecontrib/tomwer/tutorials/simple_volume_to_slurm_reconstruction.ows +29 -24
  11. orangecontrib/tomwer/tutorials/test_cor.ows +19 -0
  12. orangecontrib/tomwer/tutorials/volume_casting_on_slurm.ows +54 -0
  13. orangecontrib/tomwer/widgets/__init__.py +3 -5
  14. orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py +35 -54
  15. orangecontrib/tomwer/widgets/cluster/SlurmClusterOW.py +1 -31
  16. orangecontrib/tomwer/widgets/control/AdvancementOW.py +1 -29
  17. orangecontrib/tomwer/widgets/control/DataDiscoveryOW.py +5 -4
  18. orangecontrib/tomwer/widgets/control/DataListenerOW.py +1 -29
  19. orangecontrib/tomwer/widgets/control/DataSelectorOW.py +11 -30
  20. orangecontrib/tomwer/widgets/control/DataTransfertOW.py +2 -28
  21. orangecontrib/tomwer/widgets/control/DataValidatorOW.py +1 -28
  22. orangecontrib/tomwer/widgets/control/DataWatcherOW.py +1 -28
  23. orangecontrib/tomwer/widgets/control/EDF2NXTomomillOW.py +48 -51
  24. orangecontrib/tomwer/widgets/control/EmailOW.py +12 -2
  25. orangecontrib/tomwer/widgets/control/FilterOW.py +1 -28
  26. orangecontrib/tomwer/widgets/control/NXTomomillOW.py +37 -53
  27. orangecontrib/tomwer/widgets/control/NXtomoConcatenate.py +21 -20
  28. orangecontrib/tomwer/widgets/control/NotifierOW.py +9 -28
  29. orangecontrib/tomwer/widgets/control/ReduceDarkFlatSelectorOW.py +3 -2
  30. orangecontrib/tomwer/widgets/control/SingleTomoObjOW.py +1 -27
  31. orangecontrib/tomwer/widgets/control/TimerOW.py +9 -28
  32. orangecontrib/tomwer/widgets/control/TomoObjSeriesOW.py +58 -0
  33. orangecontrib/tomwer/widgets/control/VolumeSelector.py +8 -30
  34. orangecontrib/tomwer/widgets/control/icons/nxtomomill.svg +173 -119
  35. orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.png +0 -0
  36. orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.svg +55 -195
  37. orangecontrib/tomwer/widgets/control/icons/{tomoobjserie.svg → tomoobjseries.svg} +2 -2
  38. orangecontrib/tomwer/widgets/dataportal/PublishProcessedDataOW.py +172 -0
  39. orangecontrib/tomwer/widgets/{icat → dataportal}/__init__.py +2 -2
  40. orangecontrib/tomwer/widgets/debugtools/DatasetGeneratorOW.py +2 -29
  41. orangecontrib/tomwer/widgets/debugtools/ObjectInspectorOW.py +1 -29
  42. orangecontrib/tomwer/widgets/edit/DarkFlatPatchOW.py +48 -73
  43. orangecontrib/tomwer/widgets/edit/ImageKeyEditorOW.py +48 -75
  44. orangecontrib/tomwer/widgets/edit/ImageKeyUpgraderOW.py +5 -30
  45. orangecontrib/tomwer/widgets/edit/NXtomoEditorOW.py +51 -52
  46. orangecontrib/tomwer/widgets/other/PythonScriptOW.py +22 -10
  47. orangecontrib/tomwer/widgets/reconstruction/AxisOW.py +51 -60
  48. orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py +22 -68
  49. orangecontrib/tomwer/widgets/reconstruction/DarkRefAndCopyOW.py +3 -30
  50. orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py +21 -19
  51. orangecontrib/tomwer/widgets/reconstruction/NabuOW.py +7 -70
  52. orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py +41 -84
  53. orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py +15 -40
  54. orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py +13 -35
  55. orangecontrib/tomwer/widgets/reconstruction/SinoNormOW.py +2 -30
  56. orangecontrib/tomwer/widgets/stitching/ZStitchingConfigOW.py +11 -11
  57. orangecontrib/tomwer/widgets/utils.py +2 -29
  58. orangecontrib/tomwer/widgets/visualization/DataViewerOW.py +1 -27
  59. orangecontrib/tomwer/widgets/visualization/DiffViewerOW.py +1 -27
  60. orangecontrib/tomwer/widgets/visualization/NXtomoMetadataViewerOW.py +1 -1
  61. orangecontrib/tomwer/widgets/visualization/RadioStackOW.py +2 -28
  62. orangecontrib/tomwer/widgets/visualization/SampleMovedOW.py +1 -27
  63. orangecontrib/tomwer/widgets/visualization/SinogramViewerOW.py +1 -27
  64. orangecontrib/tomwer/widgets/visualization/SliceStackOW.py +2 -28
  65. tomwer/__init__.py +3 -28
  66. tomwer/__main__.py +8 -4
  67. tomwer/app/__init__.py +2 -0
  68. tomwer/app/axis.py +8 -10
  69. tomwer/app/canvas.py +23 -29
  70. tomwer/app/canvas_launcher/config.py +14 -102
  71. tomwer/app/canvas_launcher/environ.py +5 -8
  72. tomwer/app/canvas_launcher/mainwindow.py +175 -69
  73. tomwer/app/canvas_launcher/splash.py +1 -3
  74. tomwer/app/canvas_launcher/utils.py +47 -0
  75. tomwer/app/canvas_launcher/widgetsscheme.py +3 -10
  76. tomwer/app/diffframe.py +2 -0
  77. tomwer/app/imagekeyeditor.py +2 -1
  78. tomwer/app/imagekeyupgrader.py +2 -0
  79. tomwer/app/multicor.py +5 -2
  80. tomwer/app/multipag.py +16 -5
  81. tomwer/app/nabuapp.py +2 -1
  82. tomwer/app/nxtomoeditor.py +17 -12
  83. tomwer/app/patchrawdarkflat.py +2 -0
  84. tomwer/app/radiostack.py +3 -2
  85. tomwer/app/reducedarkflat.py +3 -0
  86. tomwer/app/samplemoved.py +2 -0
  87. tomwer/app/scanviewer.py +2 -0
  88. tomwer/app/sinogramviewer.py +2 -0
  89. tomwer/app/slicestack.py +11 -13
  90. tomwer/app/stitching/common.py +431 -0
  91. tomwer/app/stopdatalistener.py +3 -0
  92. tomwer/app/ystitching.py +26 -0
  93. tomwer/app/zstitching.py +8 -363
  94. tomwer/core/__init__.py +2 -28
  95. tomwer/core/cluster/__init__.py +3 -0
  96. tomwer/core/cluster/cluster.py +10 -26
  97. tomwer/core/futureobject.py +17 -43
  98. tomwer/core/log/__init__.py +2 -0
  99. tomwer/core/log/processlog.py +0 -28
  100. tomwer/core/process/cluster/supervisor.py +52 -34
  101. tomwer/core/process/conditions/filters.py +3 -28
  102. tomwer/core/process/control/datalistener/datalistener.py +7 -75
  103. tomwer/core/process/control/datalistener/rpcserver.py +8 -38
  104. tomwer/core/process/control/datawatcher/datawatcher.py +11 -40
  105. tomwer/core/process/control/datawatcher/datawatcherobserver.py +30 -64
  106. tomwer/core/process/control/datawatcher/datawatcherprocess.py +11 -32
  107. tomwer/core/process/control/datawatcher/edfdwprocess.py +2 -27
  108. tomwer/core/process/control/datawatcher/hdf5dwprocess.py +1 -26
  109. tomwer/core/process/control/datawatcher/status.py +1 -26
  110. tomwer/core/process/control/emailnotifier.py +11 -23
  111. tomwer/core/process/control/nxtomoconcatenate.py +20 -18
  112. tomwer/core/process/control/nxtomomill.py +9 -44
  113. tomwer/core/process/control/scanlist.py +0 -27
  114. tomwer/core/process/control/scantransfer.py +15 -13
  115. tomwer/core/process/control/scanvalidator.py +4 -30
  116. tomwer/core/process/control/{test → tests}/test_concatenate_nxtomos.py +5 -5
  117. tomwer/core/process/control/timer.py +1 -27
  118. tomwer/core/process/control/tomoobjseries.py +12 -0
  119. tomwer/core/process/drac/binning.py +37 -0
  120. tomwer/core/process/drac/dracbase.py +170 -0
  121. tomwer/core/process/drac/gallery.py +109 -0
  122. tomwer/core/process/drac/output.py +12 -0
  123. tomwer/core/process/drac/processeddataset.py +147 -0
  124. tomwer/core/process/drac/publish.py +118 -0
  125. tomwer/core/process/drac/rawdataset.py +142 -0
  126. tomwer/core/process/drac/tests/test_gallery.py +71 -0
  127. tomwer/core/process/drac/tests/test_icat_processed_dataset.py +80 -0
  128. tomwer/core/process/drac/tests/test_icat_raw_dataset.py +90 -0
  129. tomwer/core/process/edit/darkflatpatch.py +1 -28
  130. tomwer/core/process/edit/imagekeyeditor.py +4 -32
  131. tomwer/core/process/edit/nxtomoeditor.py +307 -0
  132. tomwer/core/process/edit/tests/test_darkflatpatch.py +243 -0
  133. tomwer/core/process/edit/tests/test_imagekey_editor.py +99 -0
  134. tomwer/core/process/output.py +9 -2
  135. tomwer/core/process/reconstruction/__init__.py +0 -26
  136. tomwer/core/process/reconstruction/axis/anglemode.py +1 -29
  137. tomwer/core/process/reconstruction/axis/axis.py +47 -804
  138. tomwer/core/process/reconstruction/axis/mode.py +89 -25
  139. tomwer/core/process/reconstruction/axis/params.py +131 -283
  140. tomwer/core/process/reconstruction/axis/projectiontype.py +0 -28
  141. tomwer/core/process/reconstruction/axis/side.py +8 -0
  142. tomwer/core/process/reconstruction/darkref/darkrefs.py +14 -39
  143. tomwer/core/process/reconstruction/darkref/darkrefscopy.py +7 -39
  144. tomwer/core/process/reconstruction/darkref/params.py +1 -28
  145. tomwer/core/process/reconstruction/nabu/castvolume.py +19 -34
  146. tomwer/core/process/reconstruction/nabu/nabucommon.py +18 -43
  147. tomwer/core/process/reconstruction/nabu/nabuscores.py +64 -68
  148. tomwer/core/process/reconstruction/nabu/nabuslices.py +63 -105
  149. tomwer/core/process/reconstruction/nabu/nabuvolume.py +44 -70
  150. tomwer/core/process/reconstruction/nabu/plane.py +10 -0
  151. tomwer/core/process/reconstruction/nabu/settings.py +1 -28
  152. tomwer/core/process/reconstruction/nabu/target.py +0 -28
  153. tomwer/core/process/reconstruction/nabu/test/test_castvolume.py +116 -0
  154. tomwer/core/process/reconstruction/nabu/test/test_nabu_utils.py +277 -0
  155. tomwer/core/process/reconstruction/nabu/test/test_nabunormalization.py +199 -0
  156. tomwer/core/process/reconstruction/nabu/utils.py +11 -60
  157. tomwer/core/process/reconstruction/normalization/normalization.py +2 -32
  158. tomwer/core/process/reconstruction/normalization/params.py +3 -35
  159. tomwer/core/process/reconstruction/output.py +14 -19
  160. tomwer/core/process/reconstruction/paramsbase.py +4 -33
  161. tomwer/core/process/reconstruction/saaxis/params.py +5 -33
  162. tomwer/core/process/reconstruction/saaxis/saaxis.py +22 -51
  163. tomwer/core/process/reconstruction/sadeltabeta/params.py +2 -31
  164. tomwer/core/process/reconstruction/sadeltabeta/sadeltabeta.py +18 -46
  165. tomwer/core/process/reconstruction/scores/params.py +9 -39
  166. tomwer/core/process/reconstruction/scores/scores.py +10 -42
  167. tomwer/core/process/reconstruction/tests/__init__.py +0 -0
  168. tomwer/core/process/reconstruction/tests/test_axis.py +46 -0
  169. tomwer/core/process/reconstruction/tests/test_darkref.py +33 -0
  170. tomwer/core/process/reconstruction/{test → tests}/test_saaxis.py +1 -27
  171. tomwer/core/process/reconstruction/tests/test_sadeltabeta.py +48 -0
  172. tomwer/core/process/reconstruction/{test → tests}/test_utils.py +4 -4
  173. tomwer/core/process/reconstruction/utils/cor.py +8 -4
  174. tomwer/core/process/script/python.py +1 -27
  175. tomwer/core/process/script/tests/test_script.py +41 -0
  176. tomwer/core/process/stitching/metadataholder.py +5 -4
  177. tomwer/core/process/stitching/nabustitcher.py +35 -5
  178. tomwer/core/process/stitching/tests/test_metadataholder.py +17 -0
  179. tomwer/core/process/task.py +20 -63
  180. tomwer/core/process/tests/__init__.py +0 -0
  181. tomwer/core/process/{test → tests}/test_conditions.py +1 -28
  182. tomwer/core/process/{test → tests}/test_dark_and_flat.py +1 -27
  183. tomwer/core/process/{test → tests}/test_data_listener.py +1 -27
  184. tomwer/core/process/{test → tests}/test_data_transfer.py +2 -28
  185. tomwer/core/process/{test → tests}/test_data_watcher.py +1 -27
  186. tomwer/core/process/{test → tests}/test_nabu.py +2 -33
  187. tomwer/core/process/{test → tests}/test_normalization.py +1 -26
  188. tomwer/core/process/{test → tests}/test_timer.py +1 -27
  189. tomwer/core/process/utils.py +2 -31
  190. tomwer/core/process/visualization/dataviewer.py +1 -26
  191. tomwer/core/process/visualization/diffviewer.py +1 -26
  192. tomwer/core/process/visualization/imagestackviewer.py +0 -26
  193. tomwer/core/process/visualization/radiostack.py +0 -26
  194. tomwer/core/process/visualization/samplemoved.py +0 -28
  195. tomwer/core/process/visualization/sinogramviewer.py +0 -27
  196. tomwer/core/process/visualization/slicestack.py +0 -28
  197. tomwer/core/process/visualization/tests/test_data_viewer.py +12 -0
  198. tomwer/core/process/visualization/tests/test_diff_viewer.py +12 -0
  199. tomwer/core/process/visualization/tests/test_image_stack_viewer.py +14 -0
  200. tomwer/core/process/visualization/tests/test_radio_stack.py +12 -0
  201. tomwer/core/process/visualization/tests/test_sample_moved.py +14 -0
  202. tomwer/core/process/visualization/tests/test_sinogram_viewer.py +13 -0
  203. tomwer/core/process/visualization/tests/test_slice_stack.py +13 -0
  204. tomwer/core/process/visualization/tests/test_volume_viewer.py +12 -0
  205. tomwer/core/process/visualization/volumeviewer.py +0 -29
  206. tomwer/core/scan/__init__.py +3 -27
  207. tomwer/core/scan/blissscan.py +5 -34
  208. tomwer/core/scan/edfscan.py +19 -53
  209. tomwer/core/scan/hdf5scan.py +2 -2
  210. tomwer/core/scan/nxtomoscan.py +48 -54
  211. tomwer/core/scan/scanbase.py +107 -203
  212. tomwer/core/scan/scanfactory.py +11 -41
  213. tomwer/core/scan/tests/__init__.py +0 -0
  214. tomwer/core/scan/tests/test_edf.py +25 -0
  215. tomwer/core/scan/tests/test_future_scan.py +35 -0
  216. tomwer/core/scan/tests/test_nxtomoscan.py +143 -0
  217. tomwer/core/scan/tests/test_process_registration.py +64 -0
  218. tomwer/core/settings.py +18 -40
  219. tomwer/core/tests/__init__.py +0 -0
  220. tomwer/core/tests/test_scanutils.py +26 -0
  221. tomwer/core/{test → tests}/test_utils.py +1 -28
  222. tomwer/core/tomwer_object.py +4 -0
  223. tomwer/core/utils/__init__.py +2 -0
  224. tomwer/core/utils/char.py +0 -28
  225. tomwer/core/utils/deprecation.py +12 -38
  226. tomwer/core/utils/dictutils.py +1 -3
  227. tomwer/core/utils/ftseriesutils.py +1 -27
  228. tomwer/core/utils/gpu.py +0 -28
  229. tomwer/core/utils/image.py +8 -39
  230. tomwer/core/utils/locker.py +1 -28
  231. tomwer/core/utils/logconfig.py +0 -27
  232. tomwer/core/utils/normalization.py +4 -31
  233. tomwer/core/utils/nxtomoutils.py +8 -38
  234. tomwer/core/utils/resource.py +0 -26
  235. tomwer/core/utils/scanutils.py +23 -52
  236. tomwer/core/utils/slurm.py +7 -30
  237. tomwer/core/utils/spec.py +6 -6
  238. tomwer/core/utils/tests/__init__.py +0 -0
  239. tomwer/core/utils/tests/test_image.py +30 -0
  240. tomwer/core/utils/tests/test_nxtomo.py +38 -0
  241. tomwer/core/utils/tests/test_scan_utils.py +46 -0
  242. tomwer/core/utils/tests/test_time.py +6 -0
  243. tomwer/core/utils/threads.py +0 -26
  244. tomwer/core/utils/time.py +0 -27
  245. tomwer/core/volume/__init__.py +4 -0
  246. tomwer/core/volume/edfvolume.py +1 -28
  247. tomwer/core/volume/hdf5volume.py +1 -28
  248. tomwer/core/volume/jp2kvolume.py +1 -27
  249. tomwer/core/volume/rawvolume.py +1 -28
  250. tomwer/core/volume/tests/test_volumes.py +21 -0
  251. tomwer/core/volume/tiffvolume.py +1 -28
  252. tomwer/core/volume/volumebase.py +5 -0
  253. tomwer/core/volume/volumefactory.py +7 -33
  254. tomwer/gui/__init__.py +0 -28
  255. tomwer/gui/cluster/__init__.py +2 -0
  256. tomwer/gui/cluster/slurm.py +297 -95
  257. tomwer/gui/cluster/supervisor.py +1 -27
  258. tomwer/gui/cluster/tests/__init__.py +0 -0
  259. tomwer/gui/cluster/{test → tests}/test_cluster.py +21 -26
  260. tomwer/gui/cluster/{test → tests}/test_supervisor.py +1 -27
  261. tomwer/gui/conditions/__init__.py +2 -0
  262. tomwer/gui/conditions/filter.py +1 -26
  263. tomwer/gui/configuration/__init__.py +2 -0
  264. tomwer/gui/control/__init__.py +2 -0
  265. tomwer/gui/control/actions.py +2 -28
  266. tomwer/gui/control/datadiscovery.py +4 -3
  267. tomwer/gui/control/datalist.py +64 -69
  268. tomwer/gui/control/datalistener.py +1 -39
  269. tomwer/gui/control/datareacheractions.py +1 -28
  270. tomwer/gui/control/datatransfert.py +2 -29
  271. tomwer/gui/control/datavalidator.py +3 -37
  272. tomwer/gui/control/datawatcher/__init__.py +0 -28
  273. tomwer/gui/control/datawatcher/configuration.py +1 -28
  274. tomwer/gui/control/datawatcher/datawatcher.py +3 -32
  275. tomwer/gui/control/datawatcher/datawatcherobserver.py +2 -28
  276. tomwer/gui/control/history.py +5 -35
  277. tomwer/gui/control/nxtomomill.py +3 -30
  278. tomwer/gui/control/observations.py +61 -55
  279. tomwer/gui/control/reducedarkflatselector.py +24 -20
  280. tomwer/gui/control/scanselectorwidget.py +2 -28
  281. tomwer/gui/control/selectorwidgetbase.py +17 -17
  282. tomwer/gui/control/series/__init__.py +0 -0
  283. tomwer/gui/control/{serie/seriecreator.py → series/seriescreator.py} +214 -235
  284. tomwer/gui/control/series/serieswaiter.py +0 -0
  285. tomwer/gui/control/series/test/test_creator.py +424 -0
  286. tomwer/gui/control/series/test/test_nxtomo_concatenate.py +21 -0
  287. tomwer/gui/control/singletomoobj.py +1 -1
  288. tomwer/gui/control/tests/__init__.py +0 -0
  289. tomwer/gui/control/tests/test_datalist.py +47 -0
  290. tomwer/gui/control/{test → tests}/test_datalistener.py +1 -28
  291. tomwer/gui/control/tests/test_datavalidator.py +27 -0
  292. tomwer/gui/control/{test → tests}/test_inputwidget.py +1 -27
  293. tomwer/gui/control/tests/test_process_manager.py +38 -0
  294. tomwer/gui/control/tests/test_scan_observations.py +23 -0
  295. tomwer/gui/control/tests/test_scanselector.py +42 -0
  296. tomwer/gui/control/{test → tests}/test_scanvalidator.py +1 -27
  297. tomwer/gui/control/{test → tests}/test_volume_dialog.py +2 -30
  298. tomwer/gui/control/{test → tests}/test_volumeselector.py +1 -27
  299. tomwer/gui/control/volumeselectorwidget.py +2 -30
  300. tomwer/gui/dataportal/__init__.py +2 -0
  301. tomwer/gui/{icat → dataportal}/createscreenshots.py +3 -2
  302. tomwer/gui/dataportal/gallery.py +133 -0
  303. tomwer/gui/dataportal/outputformat.py +0 -0
  304. tomwer/gui/dataportal/publish.py +96 -0
  305. tomwer/gui/dataportal/tests/test_create_screenshots_gui.py +23 -0
  306. tomwer/gui/dataportal/tests/test_gallery_gui.py +21 -0
  307. tomwer/gui/debugtools/__init__.py +2 -0
  308. tomwer/gui/debugtools/datasetgenerator.py +1 -30
  309. tomwer/gui/debugtools/objectinspector.py +1 -29
  310. tomwer/gui/dialog/QDataDialog.py +89 -0
  311. tomwer/gui/{qfolderdialog.py → dialog/QVolumeDialog.py} +8 -107
  312. tomwer/gui/dialog/__init__.py +1 -0
  313. tomwer/gui/edit/__init__.py +2 -0
  314. tomwer/gui/edit/dkrfpatch.py +52 -87
  315. tomwer/gui/edit/imagekeyeditor.py +18 -54
  316. tomwer/gui/edit/nxtomoeditor.py +113 -300
  317. tomwer/gui/edit/nxtomowarmer.py +3 -2
  318. tomwer/gui/edit/tests/__init__.py +0 -0
  319. tomwer/gui/edit/{test → tests}/test_dkrf_patch.py +3 -29
  320. tomwer/gui/edit/{test → tests}/test_image_key_editor.py +1 -27
  321. tomwer/gui/edit/{test → tests}/test_nx_editor.py +45 -23
  322. tomwer/gui/fonts.py +5 -0
  323. tomwer/gui/icons.py +28 -66
  324. tomwer/gui/illustrations.py +4 -34
  325. tomwer/gui/imagefromfile.py +5 -30
  326. tomwer/gui/metadataloader.py +36 -0
  327. tomwer/gui/qconfigfile.py +3 -0
  328. tomwer/gui/qlefilesystem.py +3 -0
  329. tomwer/gui/reconstruction/__init__.py +2 -0
  330. tomwer/gui/reconstruction/axis/AxisMainWindow.py +275 -0
  331. tomwer/gui/reconstruction/axis/AxisOptionsWidget.py +313 -0
  332. tomwer/gui/reconstruction/axis/AxisSettingsWidget.py +797 -0
  333. tomwer/gui/reconstruction/axis/AxisWidget.py +534 -0
  334. tomwer/gui/reconstruction/axis/CalculationWidget.py +218 -0
  335. tomwer/gui/reconstruction/axis/CompareImages.py +11 -44
  336. tomwer/gui/reconstruction/axis/ControlWidget.py +285 -0
  337. tomwer/gui/reconstruction/axis/EstimatedCORWidget.py +394 -0
  338. tomwer/gui/reconstruction/axis/EstimatedCorComboBox.py +118 -0
  339. tomwer/gui/reconstruction/axis/InputWidget.py +347 -0
  340. tomwer/gui/reconstruction/axis/ManualFramesSelection.py +168 -0
  341. tomwer/gui/reconstruction/axis/__init__.py +2 -2
  342. tomwer/gui/reconstruction/darkref/__init__.py +0 -27
  343. tomwer/gui/reconstruction/darkref/darkrefcopywidget.py +5 -34
  344. tomwer/gui/reconstruction/darkref/darkrefwidget.py +1 -27
  345. tomwer/gui/reconstruction/nabu/castvolume.py +40 -59
  346. tomwer/gui/reconstruction/nabu/check.py +7 -33
  347. tomwer/gui/reconstruction/nabu/nabuconfig/base.py +7 -34
  348. tomwer/gui/reconstruction/nabu/nabuconfig/ctf.py +6 -5
  349. tomwer/gui/reconstruction/nabu/nabuconfig/nabuconfig.py +10 -69
  350. tomwer/gui/reconstruction/nabu/nabuconfig/output.py +3 -47
  351. tomwer/gui/reconstruction/nabu/nabuconfig/phase.py +54 -36
  352. tomwer/gui/reconstruction/nabu/nabuconfig/preprocessing.py +103 -54
  353. tomwer/gui/reconstruction/nabu/nabuconfig/reconstruction.py +116 -65
  354. tomwer/gui/reconstruction/nabu/nabuflow.py +31 -61
  355. tomwer/gui/reconstruction/nabu/platform.py +94 -0
  356. tomwer/gui/reconstruction/nabu/slices.py +81 -45
  357. tomwer/gui/reconstruction/nabu/slurm.py +1 -27
  358. tomwer/gui/reconstruction/nabu/test/test_cast_volume.py +82 -0
  359. tomwer/gui/reconstruction/nabu/test/test_check.py +66 -0
  360. tomwer/gui/reconstruction/nabu/test/test_ctf.py +46 -0
  361. tomwer/gui/reconstruction/nabu/test/test_helical.py +21 -0
  362. tomwer/gui/reconstruction/nabu/test/test_nabu_preprocessing.py +81 -0
  363. tomwer/gui/reconstruction/nabu/volume.py +62 -90
  364. tomwer/gui/reconstruction/normalization/intensity.py +5 -32
  365. tomwer/gui/reconstruction/normalization/test/test_intensity.py +89 -0
  366. tomwer/gui/reconstruction/saaxis/corrangeselector.py +32 -56
  367. tomwer/gui/reconstruction/saaxis/dimensionwidget.py +56 -96
  368. tomwer/gui/reconstruction/saaxis/saaxis.py +17 -38
  369. tomwer/gui/reconstruction/saaxis/sliceselector.py +8 -39
  370. tomwer/gui/reconstruction/sadeltabeta/saadeltabeta.py +19 -37
  371. tomwer/gui/reconstruction/scores/control.py +2 -30
  372. tomwer/gui/reconstruction/scores/scoreplot.py +23 -49
  373. tomwer/gui/reconstruction/tests/__init__.py +0 -0
  374. tomwer/gui/reconstruction/{test → tests}/test_axis.py +23 -49
  375. tomwer/gui/reconstruction/{test → tests}/test_nabu.py +16 -31
  376. tomwer/gui/reconstruction/{test → tests}/test_saaxis.py +10 -37
  377. tomwer/gui/reconstruction/{test → tests}/test_sadeltabeta.py +1 -26
  378. tomwer/gui/samplemoved/__init__.py +2 -30
  379. tomwer/gui/samplemoved/selectiontable.py +3 -33
  380. tomwer/gui/settings.py +7 -0
  381. tomwer/gui/stackplot.py +33 -661
  382. tomwer/gui/stacks.py +261 -135
  383. tomwer/gui/stitching/SingleAxisStitchingWidget.py +326 -0
  384. tomwer/gui/stitching/StitchingOptionsWidget.py +438 -0
  385. tomwer/gui/stitching/StitchingWindow.py +586 -0
  386. tomwer/gui/stitching/__init__.py +2 -0
  387. tomwer/gui/stitching/alignment.py +90 -0
  388. tomwer/gui/stitching/axisorderedlist.py +44 -34
  389. tomwer/gui/stitching/config/axisparams.py +25 -11
  390. tomwer/gui/stitching/config/output.py +6 -5
  391. tomwer/gui/stitching/config/positionoveraxis.py +313 -51
  392. tomwer/gui/stitching/config/stitchingstrategies.py +22 -16
  393. tomwer/gui/stitching/config/tests/test_axisparams.py +25 -0
  394. tomwer/gui/stitching/config/tomoobjdetails.py +3 -5
  395. tomwer/gui/stitching/normalization.py +1 -0
  396. tomwer/gui/stitching/preview.py +59 -0
  397. tomwer/gui/stitching/singleaxis.py +57 -0
  398. tomwer/gui/stitching/stitchandbackground.py +3 -2
  399. tomwer/gui/stitching/stitching_preview.py +44 -36
  400. tomwer/gui/stitching/stitching_raw.py +5 -3
  401. tomwer/gui/stitching/tests/test_ZStitchingWindow.py +88 -0
  402. tomwer/gui/stitching/tests/test_axis_ordered_list.py +21 -0
  403. tomwer/gui/stitching/tests/test_normalization.py +27 -0
  404. tomwer/gui/stitching/tests/test_preview.py +68 -0
  405. tomwer/gui/stitching/tests/test_stitching_raw.py +110 -0
  406. tomwer/gui/stitching/tests/utils.py +92 -0
  407. tomwer/gui/stitching/utils.py +14 -0
  408. tomwer/gui/stitching/z_stitching/fineestimation.py +5 -33
  409. tomwer/gui/stitching/z_stitching/tests/test_fine_estimation.py +35 -0
  410. tomwer/gui/stitching/z_stitching/tests/test_raw_estimation.py +215 -0
  411. tomwer/gui/stitching/z_stitching/tests/test_stitching_window.py +51 -0
  412. tomwer/gui/tests/__init__.py +0 -0
  413. tomwer/gui/tests/test_axis_gui.py +43 -0
  414. tomwer/gui/{test → tests}/test_qfolder_dialog.py +1 -1
  415. tomwer/gui/utils/RangeWidget.py +44 -0
  416. tomwer/gui/utils/buttons.py +4 -3
  417. tomwer/gui/utils/completer.py +2 -33
  418. tomwer/gui/utils/flow.py +11 -40
  419. tomwer/gui/utils/gpu.py +60 -0
  420. tomwer/gui/utils/illustrations.py +1 -26
  421. tomwer/gui/utils/inputwidget.py +35 -73
  422. tomwer/gui/utils/lineselector/lineselector.py +9 -46
  423. tomwer/gui/utils/loadingmode.py +81 -0
  424. tomwer/gui/utils/qt_utils.py +9 -0
  425. tomwer/gui/utils/sandboxes.py +1 -26
  426. tomwer/gui/utils/scandescription.py +2 -31
  427. tomwer/gui/utils/scrollarea.py +6 -55
  428. tomwer/gui/utils/slider.py +4 -28
  429. tomwer/gui/utils/splashscreen.py +0 -28
  430. tomwer/gui/utils/step.py +14 -13
  431. tomwer/gui/utils/tests/test_completer.py +41 -0
  432. tomwer/gui/utils/tests/test_line_selector.py +21 -0
  433. tomwer/gui/utils/tests/test_splashscreen.py +8 -0
  434. tomwer/gui/utils/tests/test_vignettes.py +68 -0
  435. tomwer/gui/utils/unitsystem.py +15 -69
  436. tomwer/gui/utils/utils.py +4 -5
  437. tomwer/gui/utils/vignettes.py +10 -41
  438. tomwer/gui/utils/waiterthread.py +0 -26
  439. tomwer/gui/visualization/__init__.py +2 -0
  440. tomwer/gui/visualization/dataviewer.py +68 -421
  441. tomwer/gui/visualization/diffviewer/diffviewer.py +2 -30
  442. tomwer/gui/visualization/diffviewer/shiftwidget.py +4 -29
  443. tomwer/gui/visualization/fullscreenplot.py +5 -5
  444. tomwer/gui/visualization/imagestack.py +403 -0
  445. tomwer/gui/visualization/nxtomometadata.py +0 -4
  446. tomwer/gui/visualization/reconstructionparameters.py +14 -32
  447. tomwer/gui/visualization/scanoverview.py +33 -66
  448. tomwer/gui/visualization/sinogramviewer.py +2 -28
  449. tomwer/gui/visualization/test/__init__.py +0 -28
  450. tomwer/gui/visualization/test/test_dataviewer.py +1 -28
  451. tomwer/gui/visualization/test/test_diffviewer.py +1 -28
  452. tomwer/gui/visualization/test/test_nx_tomo_metadata_viewer.py +0 -5
  453. tomwer/gui/visualization/test/test_reconstruction_parameters.py +1 -27
  454. tomwer/gui/visualization/test/test_sinogramviewer.py +1 -28
  455. tomwer/gui/visualization/test/test_stacks.py +184 -115
  456. tomwer/gui/visualization/test/test_volumeviewer.py +3 -2
  457. tomwer/gui/visualization/tomoobjoverview.py +2 -2
  458. tomwer/gui/visualization/volumeoverview.py +3 -2
  459. tomwer/gui/visualization/volumeviewer.py +47 -43
  460. tomwer/io/__init__.py +2 -0
  461. tomwer/io/utils/h5pyutils.py +1 -27
  462. tomwer/io/utils/test/test_raw_and_processed_data.py +10 -0
  463. tomwer/io/utils/test/test_utils.py +67 -0
  464. tomwer/io/utils/utils.py +2 -31
  465. tomwer/resources/__init__.py +13 -33
  466. tomwer/resources/gui/icons/edit_downstream.svg +114 -0
  467. tomwer/resources/gui/icons/edit_upstream.svg +112 -0
  468. tomwer/resources/gui/icons/free_edition.svg +23 -0
  469. tomwer/resources/gui/icons/icat_gallery_opts.png +0 -0
  470. tomwer/resources/gui/icons/icat_gallery_opts.svg +80 -0
  471. tomwer/resources/gui/icons/search.png +0 -0
  472. tomwer/resources/gui/icons/search.svg +23 -0
  473. tomwer/resources/gui/icons/warning.png +0 -0
  474. tomwer/synctools/__init__.py +2 -0
  475. tomwer/synctools/axis.py +1 -27
  476. tomwer/synctools/darkref.py +1 -26
  477. tomwer/synctools/datalistener.py +1 -27
  478. tomwer/synctools/datatransfert.py +2 -27
  479. tomwer/synctools/imageloaderthread.py +1 -28
  480. tomwer/synctools/rsyncmanager.py +1 -25
  481. tomwer/synctools/saaxis.py +1 -26
  482. tomwer/synctools/sadeltabeta.py +1 -26
  483. tomwer/synctools/stacks/control/datalistener.py +1 -26
  484. tomwer/synctools/stacks/processingstack.py +4 -33
  485. tomwer/synctools/stacks/reconstruction/axis.py +6 -53
  486. tomwer/synctools/stacks/reconstruction/castvolume.py +12 -43
  487. tomwer/synctools/stacks/reconstruction/dkrefcopy.py +4 -27
  488. tomwer/synctools/stacks/reconstruction/nabu.py +3 -28
  489. tomwer/synctools/stacks/reconstruction/normalization.py +2 -27
  490. tomwer/synctools/stacks/reconstruction/saaxis.py +2 -27
  491. tomwer/synctools/stacks/reconstruction/sadeltabeta.py +2 -27
  492. tomwer/synctools/tests/__init__.py +0 -0
  493. tomwer/synctools/{test → tests}/test_darkRefs.py +16 -40
  494. tomwer/synctools/{test → tests}/test_foldertransfer.py +2 -33
  495. tomwer/synctools/utils/scanstages.py +2 -31
  496. tomwer/tests/__init__.py +1 -0
  497. tomwer/tests/app/test_stitching.py +95 -0
  498. tomwer/tests/datasets.py +1 -5
  499. tomwer/tests/orangecontrib/tomwer/widgets/cluster/tests/test_future_supervisorow.py +48 -0
  500. tomwer/tests/orangecontrib/tomwer/widgets/cluster/tests/test_slurm_clusterow.py +40 -0
  501. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_advancement.py +8 -0
  502. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_data_validator.py +55 -0
  503. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datadiscovery.py +129 -0
  504. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datalistener.py +111 -0
  505. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_dataselector.py +69 -0
  506. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datawatcher.py +411 -0
  507. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_emailow.py +29 -0
  508. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_notifier.py +24 -0
  509. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_nxtomo_concatenate_ow.py +64 -0
  510. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_nxtomomill.py +133 -0
  511. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_reduce_dark_flat_selector.py +40 -0
  512. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_singletomoobj.py +40 -0
  513. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_timerow.py +25 -0
  514. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_tomoobj_series.py +96 -0
  515. tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_volume_selector.py +69 -0
  516. orangecontrib/tomwer/widgets/edit/test/test_image_key_editor.py → tomwer/tests/orangecontrib/tomwer/widgets/debugtools/tests/test_dataset_generator.py +17 -16
  517. tomwer/tests/orangecontrib/tomwer/widgets/debugtools/tests/test_object_inspector.py +36 -0
  518. {orangecontrib/tomwer/widgets/edit/test → tomwer/tests/orangecontrib/tomwer/widgets/edit/tests}/test_dark_flat_patch.py +1 -27
  519. tomwer/tests/orangecontrib/tomwer/widgets/edit/tests/test_image_key_editor.py +30 -0
  520. tomwer/tests/orangecontrib/tomwer/widgets/edit/tests/test_nxtomo_editor.py +138 -0
  521. tomwer/tests/orangecontrib/tomwer/widgets/other/tests/test_pythonscript.py +31 -0
  522. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_axis.py +199 -0
  523. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_cast_volumeow.py +58 -0
  524. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_dark_refs_widget.py +136 -0
  525. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_delta_beta_selector.py +15 -0
  526. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_i_norm.py +200 -0
  527. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_helical_prepare_weights_double.py +20 -0
  528. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_volume.py +74 -0
  529. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_widget.py +107 -0
  530. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_sa_delta_beta.py +194 -0
  531. tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_saaxis.py +194 -0
  532. tomwer/tests/orangecontrib/tomwer/widgets/stitching/tests/test_zstitching.py +313 -0
  533. tomwer/tests/orangecontrib/tomwer/widgets/tests/test_conditions.py +85 -0
  534. tomwer/tests/orangecontrib/tomwer/widgets/tests/test_darkref.py +225 -0
  535. tomwer/tests/orangecontrib/tomwer/widgets/tests/test_foldertransfert.py +105 -0
  536. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_dataviewerow.py +57 -0
  537. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_diffviewerow.py +39 -0
  538. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_nxtomo_metadata_viewer.py +29 -0
  539. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_radio_stackow.py +31 -0
  540. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_sample_movedow.py +46 -0
  541. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_sinogram_viewerow.py +31 -0
  542. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_slice_stackow.py +31 -0
  543. tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_volume_viewerow.py +32 -0
  544. tomwer/tests/test_ewoks/test_conversion.py +104 -0
  545. tomwer/tests/test_ewoks/test_single_node_execution.py +87 -0
  546. tomwer/tests/test_ewoks/test_workflows.py +138 -0
  547. tomwer/utils.py +11 -39
  548. tomwer/version.py +2 -2
  549. {tomwer-1.3.26.dist-info → tomwer-1.4.0.dist-info}/LICENSE +3 -3
  550. tomwer-1.4.0.dist-info/METADATA +337 -0
  551. tomwer-1.4.0.dist-info/RECORD +912 -0
  552. {tomwer-1.3.26.dist-info → tomwer-1.4.0.dist-info}/WHEEL +1 -1
  553. {tomwer-1.3.26.dist-info → tomwer-1.4.0.dist-info}/entry_points.txt +1 -0
  554. orangecontrib/tomwer/widgets/control/DataListOW.py +0 -129
  555. orangecontrib/tomwer/widgets/control/TomoObjSerieOW.py +0 -86
  556. orangecontrib/tomwer/widgets/control/VolumeSymLinkOW.py +0 -182
  557. orangecontrib/tomwer/widgets/edit/test/test_nxtomo_editor.py +0 -141
  558. orangecontrib/tomwer/widgets/icat/PublishProcessedDataOW.py +0 -115
  559. orangecontrib/tomwer/widgets/icat/RawDataScreenshotCreatorOW.py +0 -98
  560. orangecontrib/tomwer/widgets/icat/SaveToGalleryAndPublishOW.py +0 -129
  561. orangecontrib/tomwer/widgets/icat/icons/add_gallery.png +0 -0
  562. orangecontrib/tomwer/widgets/icat/icons/add_gallery.svg +0 -82
  563. orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.png +0 -0
  564. orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.svg +0 -143
  565. orangecontrib/tomwer/widgets/visualization/LivesliceOW.py +0 -87
  566. orangecontrib/tomwer/widgets/visualization/icons/liveslice.png +0 -0
  567. orangecontrib/tomwer/widgets/visualization/icons/liveslice.svg +0 -110
  568. tomwer/core/log/logger.py +0 -130
  569. tomwer/core/process/control/test/test_volume_link.py +0 -74
  570. tomwer/core/process/control/tomoobjserie.py +0 -12
  571. tomwer/core/process/control/volumesymlink.py +0 -200
  572. tomwer/core/process/icat/createscreenshots.py +0 -100
  573. tomwer/core/process/icat/gallery.py +0 -377
  574. tomwer/core/process/icat/icatbase.py +0 -36
  575. tomwer/core/process/icat/publish.py +0 -228
  576. tomwer/core/process/icat/screenshots.py +0 -27
  577. tomwer/core/process/reconstruction/test/test_darkref.py +0 -60
  578. tomwer/core/process/reconstruction/test/test_sadeltabeta.py +0 -74
  579. tomwer/core/process/test/test_axis.py +0 -309
  580. tomwer/core/process/visualization/liveslice.py +0 -6
  581. tomwer/core/progress.py +0 -100
  582. tomwer/core/scan/test/test_edf.py +0 -53
  583. tomwer/core/scan/test/test_future_scan.py +0 -61
  584. tomwer/core/scan/test/test_h5.py +0 -96
  585. tomwer/core/scan/test/test_process_registration.py +0 -109
  586. tomwer/core/test/test_scanutils.py +0 -53
  587. tomwer/gui/control/emailnotifier.py +0 -174
  588. tomwer/gui/control/serie/seriewaiter.py +0 -28
  589. tomwer/gui/control/test/__init__.py +0 -28
  590. tomwer/gui/control/test/test_datalist.py +0 -96
  591. tomwer/gui/control/test/test_datavalidator.py +0 -54
  592. tomwer/gui/control/test/test_email.py +0 -35
  593. tomwer/gui/control/test/test_process_manager.py +0 -65
  594. tomwer/gui/control/test/test_scanselector.py +0 -67
  595. tomwer/gui/edit/test/__init__.py +0 -28
  596. tomwer/gui/icat/gallery.py +0 -214
  597. tomwer/gui/icat/publish.py +0 -187
  598. tomwer/gui/reconstruction/axis/axis.py +0 -733
  599. tomwer/gui/reconstruction/axis/radioaxis.py +0 -2467
  600. tomwer/gui/stitching/stitching.py +0 -1392
  601. tomwer/gui/test/__init__.py +0 -28
  602. tomwer/gui/test/test_axis_gui.py +0 -34
  603. tomwer/synctools/stacks/edit/darkflatpatch.py +0 -169
  604. tomwer/synctools/stacks/edit/imagekeyeditor.py +0 -135
  605. tomwer/third_part/WaitingOverlay.py +0 -110
  606. tomwer-1.3.26-py3.11-nspkg.pth +0 -1
  607. tomwer-1.3.26.dist-info/METADATA +0 -292
  608. tomwer-1.3.26.dist-info/RECORD +0 -785
  609. tomwer-1.3.26.dist-info/namespace_packages.txt +0 -1
  610. /orangecontrib/tomwer/{widgets/edit/test → tests}/__init__.py +0 -0
  611. {tomwer/core/process/control/test → orangecontrib/tomwer/tutorials/id16b}/__init__.py +0 -0
  612. {tomwer/core/process/icat → orangecontrib/tomwer/widgets/cluster/tests}/__init__.py +0 -0
  613. /orangecontrib/tomwer/widgets/control/icons/{tomoobjserie.png → tomoobjseries.png} +0 -0
  614. {tomwer/core/process/reconstruction/test → orangecontrib/tomwer/widgets/control/tests}/__init__.py +0 -0
  615. /orangecontrib/tomwer/widgets/{icat → dataportal}/icons/publish_processed_data.png +0 -0
  616. /orangecontrib/tomwer/widgets/{icat → dataportal}/icons/publish_processed_data.svg +0 -0
  617. {tomwer/core/process/test → orangecontrib/tomwer/widgets/debugtools/tests}/__init__.py +0 -0
  618. {tomwer/core/scan/test → orangecontrib/tomwer/widgets/edit/tests}/__init__.py +0 -0
  619. {tomwer/core/test → orangecontrib/tomwer/widgets/other/tests}/__init__.py +0 -0
  620. {tomwer/gui/cluster/test → orangecontrib/tomwer/widgets/reconstruction/tests}/__init__.py +0 -0
  621. {tomwer/gui/control/serie → orangecontrib/tomwer/widgets/stitching/tests}/__init__.py +0 -0
  622. {tomwer/gui/icat → orangecontrib/tomwer/widgets/tests}/__init__.py +0 -0
  623. {tomwer/gui/reconstruction/test → orangecontrib/tomwer/widgets/visualization/tests}/__init__.py +0 -0
  624. /tomwer/{synctools/stacks/edit → app/stitching}/__init__.py +0 -0
  625. /tomwer/{synctools/test → core/process/control/tests}/__init__.py +0 -0
  626. /tomwer/core/process/control/{test → tests}/test_email.py +0 -0
  627. /tomwer/core/process/control/{test → tests}/test_h52nx_process.py +0 -0
  628. /tomwer/{third_part → core/process/drac}/__init__.py +0 -0
  629. /tomwer/core/process/reconstruction/{test → tests}/test_axis_params.py +0 -0
  630. /tomwer/core/process/reconstruction/{test → tests}/test_darkref_copy.py +0 -0
  631. /tomwer/core/process/reconstruction/{test → tests}/test_paramsbase.py +0 -0
  632. /tomwer/core/scan/{test → tests}/test_scan.py +0 -0
  633. /tomwer/gui/control/{serie → series}/nxtomoconcatenate.py +0 -0
  634. /tomwer/gui/control/{test → tests}/test_datadiscovery.py +0 -0
  635. /tomwer/gui/control/{test → tests}/test_reducedarkflat_selector.py +0 -0
  636. /tomwer/gui/control/{test → tests}/test_single_tomo_obj.py +0 -0
  637. {orangecontrib/tomwer/widgets/edit/test → tomwer/tests/orangecontrib/tomwer/widgets/edit/tests}/test_image_key_upgrader.py +0 -0
  638. {tomwer-1.3.26.dist-info → tomwer-1.4.0.dist-info}/top_level.txt +0 -0
orangecontrib/tomwer/tutorials/simple_volume_to_slurm_reconstruction.ows CHANGED
@@ -3,43 +3,47 @@
3
3
  <nodes>
4
4
  <node id="0" name="scan selector" qualified_name="orangecontrib.tomwer.widgets.control.DataSelectorOW.DataSelectorOW" project_name="tomwer" version="" title="scan selector" position="(150, 150)" />
5
5
  <node id="1" name="reduced darks and flats" qualified_name="orangecontrib.tomwer.widgets.reconstruction.DarkRefAndCopyOW.DarkRefAndCopyOW" project_name="tomwer" version="" title="reduced darks and flats" position="(324.0, 183.0)" />
6
- <node id="2" name="default center of rotation" qualified_name="orangecontrib.tomwer.widgets.reconstruction.AxisOW.AxisOW" project_name="tomwer" version="" title="default center of rotation" position="(490.0, 218.0)" />
6
+ <node id="2" name="center of rotation finder" qualified_name="orangecontrib.tomwer.widgets.reconstruction.AxisOW.AxisOW" project_name="tomwer" version="" title="default center of rotation" position="(490.0, 218.0)" />
7
7
  <node id="3" name="nabu slice reconstruction" qualified_name="orangecontrib.tomwer.widgets.reconstruction.NabuOW.NabuOW" project_name="tomwer" version="" title="nabu slice reconstruction" position="(649.0, 261.0)" />
8
- <node id="4" name="data viewer" qualified_name="orangecontrib.tomwer.widgets.visualization.DataViewerOW.DataViewerOW" project_name="tomwer" version="" title="data viewer" position="(818.0, 248.0)" />
9
- <node id="5" name="nabu volume reconstruction" qualified_name="orangecontrib.tomwer.widgets.reconstruction.NabuVolumeOW.NabuVolumeOW" project_name="tomwer" version="" title="nabu volume reconstruction" position="(812.0, 391.0)" />
10
- <node id="6" name="volume viewer" qualified_name="orangecontrib.tomwer.widgets.visualization.VolumeViewerOW.VolumeViewerOW" project_name="tomwer" version="" title="volume viewer" position="(1136.75, 545.25)" />
11
- <node id="7" name="slurm cluster" qualified_name="orangecontrib.tomwer.widgets.cluster.SlurmClusterOW.SlurmClusterOW" project_name="tomwer" version="" title="slurm cluster" position="(648.0, 486.5)" />
12
- <node id="8" name="future supervisor" qualified_name="orangecontrib.tomwer.widgets.cluster.FutureSupervisorOW.FutureSupervisorOW" project_name="tomwer" version="" title="future supervisor" position="(988.0, 497.75)" />
8
+ <node id="4" name="data viewer" qualified_name="orangecontrib.tomwer.widgets.visualization.DataViewerOW.DataViewerOW" project_name="tomwer" version="" title="data viewer" position="(930.222222222222, 248.00000000000003)" />
9
+ <node id="5" name="nabu volume reconstruction" qualified_name="orangecontrib.tomwer.widgets.reconstruction.NabuVolumeOW.NabuVolumeOW" project_name="tomwer" version="" title="nabu volume reconstruction" position="(926.4444444444445, 404.3333333333334)" />
10
+ <node id="6" name="volume viewer" qualified_name="orangecontrib.tomwer.widgets.visualization.VolumeViewerOW.VolumeViewerOW" project_name="tomwer" version="" title="volume viewer" position="(1186.7500000000002, 547.4722222222222)" />
11
+ <node id="7" name="slurm cluster" qualified_name="orangecontrib.tomwer.widgets.cluster.SlurmClusterOW.SlurmClusterOW" project_name="tomwer" version="" title="slurm cluster" position="(475.0, 502.5)" />
12
+ <node id="8" name="future supervisor" qualified_name="orangecontrib.tomwer.widgets.cluster.FutureSupervisorOW.FutureSupervisorOW" project_name="tomwer" version="" title="future supervisor" position="(1060.2222222222224, 489.9722222222221)" />
13
+ <node id="9" name="future supervisor" qualified_name="orangecontrib.tomwer.widgets.cluster.FutureSupervisorOW.FutureSupervisorOW" project_name="tomwer" version="" title="future supervisor (1)" position="(800.4999999999997, 329.3333333333333)" />
13
14
  </nodes>
14
15
  <links>
15
16
  <link id="0" source_node_id="0" sink_node_id="1" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
16
17
  <link id="1" source_node_id="1" sink_node_id="2" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
17
18
  <link id="2" source_node_id="2" sink_node_id="3" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
18
- <link id="3" source_node_id="3" sink_node_id="4" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
19
- <link id="4" source_node_id="3" sink_node_id="5" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
20
- <link id="5" source_node_id="7" sink_node_id="5" source_channel="cluster_config" sink_channel="cluster_config" enabled="true" source_channel_id="data_out" sink_channel_id="cluster_in" />
21
- <link id="6" source_node_id="5" sink_node_id="8" source_channel="future_tomo_obj" sink_channel="future_tomo_obj" enabled="true" source_channel_id="future_out" sink_channel_id="future_in" />
22
- <link id="7" source_node_id="8" sink_node_id="6" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
19
+ <link id="3" source_node_id="7" sink_node_id="5" source_channel="cluster_config" sink_channel="cluster_config" enabled="true" source_channel_id="config_out" sink_channel_id="cluster_in" />
20
+ <link id="4" source_node_id="5" sink_node_id="8" source_channel="future_tomo_obj" sink_channel="future_tomo_obj" enabled="true" source_channel_id="future_out" sink_channel_id="future_tomo_obj" />
21
+ <link id="5" source_node_id="8" sink_node_id="6" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
22
+ <link id="6" source_node_id="7" sink_node_id="3" source_channel="cluster_config" sink_channel="cluster_config" enabled="true" source_channel_id="config_out" sink_channel_id="cluster_in" />
23
+ <link id="7" source_node_id="3" sink_node_id="9" source_channel="future_tomo_obj" sink_channel="future_tomo_obj" enabled="true" source_channel_id="future_out" sink_channel_id="future_tomo_obj" />
24
+ <link id="8" source_node_id="9" sink_node_id="5" source_channel="volume" sink_channel="data" enabled="true" source_channel_id="volume" sink_channel_id="data" />
25
+ <link id="9" source_node_id="9" sink_node_id="4" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
23
26
  </links>
24
27
  <annotations>
25
28
  <arrow id="0" start="(267.0, 56.0)" end="(194.0, 105.0)" fill="#C1272D" />
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29
  <arrow id="1" start="(248.0, 298.0)" end="(292.0, 239.0)" fill="#C1272D" />
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- <arrow id="2" start="(576.0, 108.0)" end="(521.0, 168.0)" fill="#C1272D" />
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- <arrow id="3" start="(573.0, 405.0)" end="(625.0, 330.0)" fill="#C1272D" />
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- <arrow id="4" start="(905.0, 165.99999999999997)" end="(843.0, 215.99999999999997)" fill="#C1272D" />
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+ <arrow id="2" start="(506.0, 98.0)" end="(521.0, 168.0)" fill="#C1272D" />
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+ <arrow id="3" start="(667.0, 117.0)" end="(658.0, 200.0)" fill="#C1272D" />
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+ <arrow id="4" start="(1008.3333333333333, 169.3333333333333)" end="(946.3333333333333, 219.3333333333333)" fill="#C1272D" />
30
33
  <text id="5" type="text/plain" rect="(276.25, 17.75, 150.0, 31.0)" font-family="Ubuntu" font-size="16">provide dataset</text>
31
34
  <text id="6" type="text/plain" rect="(187.0, 309.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">compute reduced darks and flats</text>
32
- <text id="7" type="text/plain" rect="(596.0, 53.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">compute center of rotation</text>
33
- <text id="8" type="text/plain" rect="(460.75, 416.75, 150.0, 67.0)" font-family="Ubuntu" font-size="16">define one or several slice to be reconstructed</text>
34
- <text id="9" type="text/plain" rect="(919.0, 121.0, 150.0, 85.0)" font-family="Ubuntu" font-size="16">display reconstructed slices and browse dataset</text>
35
- <arrow id="10" start="(937.0, 320.75)" end="(845.5, 355.0)" fill="#C1272D" />
35
+ <text id="7" type="text/plain" rect="(444.0, 43.0, 150.0, 50.0)" font-family="Ubuntu" font-size="16">compute center of rotation</text>
36
+ <text id="8" type="text/plain" rect="(648.75, 45.75, 150.0, 69.0)" font-family="Ubuntu" font-size="16">define one or several slice to be reconstructed</text>
37
+ <text id="9" type="text/plain" rect="(1022.3333333333333, 124.33333333333331, 150.0, 88.0)" font-family="Ubuntu" font-size="16">display reconstructed slices and browse dataset</text>
38
+ <arrow id="10" start="(782.5555555555552, 528.5277777777778)" end="(858.8333333333331, 466.111111111111)" fill="#C1272D" />
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39
  <arrow id="11" start="(1220.75, 472.0)" end="(1183.75, 510.0)" fill="#C1272D" />
37
40
  <text id="12" type="text/plain" rect="(1244.75, 439.0, 150.0, 67.0)" font-family="Ubuntu" font-size="16">browse reconstructed volume</text>
38
- <text id="13" type="text/plain" rect="(953.75, 289.25, 150.0, 49.0)" font-family="Ubuntu" font-size="16">reconstruct volume</text>
39
- <arrow id="14" start="(578.75, 588.75)" end="(622.5, 523.75)" fill="#C1272D" />
40
- <arrow id="15" start="(897.5, 612.5)" end="(948.75, 553.75)" fill="#C1272D" />
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- <text id="16" type="text/plain" rect="(842.5, 611.75, 150.0, 26.0)" font-family="Ubuntu" font-size="16">wait for the slurm job to be finished</text>
42
- <text id="17" type="text/plain" rect="(531.25, 583.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">define slurm node to be used</text>
41
+ <text id="13" type="text/plain" rect="(680.4166666666672, 542.5833333333333, 150.0, 50.0)" font-family="Ubuntu" font-size="16">reconstruct volume</text>
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+ <arrow id="14" start="(394.75, 594.75)" end="(438.5, 529.75)" fill="#C1272D" />
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+ <arrow id="15" start="(987.5000000000002, 316.9444444444446)" end="(888.7500000000002, 332.63888888888914)" fill="#C1272D" />
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+ <text id="16" type="text/plain" rect="(1009.1666666666667, 279.52777777777777, 150.0, 69.0)" font-family="Ubuntu" font-size="16">wait for the slurm job to be finished</text>
45
+ <text id="17" type="text/plain" rect="(347.25, 589.0, 150.0, 50.0)" font-family="Ubuntu" font-size="16">define slurm node to be used</text>
46
+ <arrow id="18" start="(1055.5555555555557, 361.1111111111111)" end="(1072.2222222222222, 448.88888888888886)" fill="#C1272D" />
43
47
  </annotations>
44
48
  <thumbnail />
45
49
  <node_properties>
@@ -51,7 +55,8 @@
51
55
  <properties node_id="5" format="literal">{'_ewoks_default_inputs': {'data': None, 'nabu_volume_params': None, 'nabu_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
52
56
  <properties node_id="6" format="literal">{'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
53
57
  <properties node_id="7" format="literal">{'_ewoks_default_inputs': {}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
54
- <properties node_id="8" format="literal">{'_ewoks_default_inputs': {}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
58
+ <properties node_id="8" format="literal">{'_ewoks_default_inputs': {}, '_ewoks_execinfo': {}, '_ewoks_varinfo': {}, 'controlAreaVisible': True, 'default_inputs': {}, 'savedWidgetGeometry': None, '__version__': 1}</properties>
59
+ <properties node_id="9" format="literal">{'_ewoks_default_inputs': {}, '_ewoks_execinfo': {}, '_ewoks_varinfo': {}, 'controlAreaVisible': True, 'default_inputs': {}, 'savedWidgetGeometry': None, '__version__': 1}</properties>
55
60
  </node_properties>
56
61
  <session_state>
57
62
  <window_groups />
orangecontrib/tomwer/tutorials/test_cor.ows ADDED
@@ -0,0 +1,19 @@
1
+ <?xml version='1.0' encoding='utf-8'?>
2
+ <scheme version="2.0" title="" description="">
3
+ <nodes>
4
+ <node id="0" name="center of rotation finder" qualified_name="orangecontrib.tomwer.widgets.reconstruction.AxisOW.AxisOW" project_name="tomwer" version="" title="center of rotation finder" position="(375.0, 146.0)" />
5
+ <node id="1" name="scan selector" qualified_name="orangecontrib.tomwer.widgets.control.DataSelectorOW.DataSelectorOW" project_name="tomwer" version="" title="scan selector" position="(150.0, 115.0)" />
6
+ </nodes>
7
+ <links>
8
+ <link id="0" source_node_id="1" sink_node_id="0" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
9
+ </links>
10
+ <annotations />
11
+ <thumbnail />
12
+ <node_properties>
13
+ <properties node_id="0" format="literal">{'_ewoks_default_inputs': {'data': None, 'axis_params': {'MODE': 'sino-coarse-to-fine', 'POSITION_VALUE': None, 'CALC_INPUT_TYPE': 'transmission_nopag', 'ANGLE_MODE': '0-180', 'SINOGRAM_LINE': 'middle', 'SINOGRAM_SUBSAMPLING': 10, 'AXIS_URL_1': '', 'AXIS_URL_2': '', 'LOOK_AT_STDMAX': False, 'NEAR_WX': 5, 'FINE_STEP_X': 0.1, 'SCALE_IMG2_TO_IMG1': False, 'NEAR_POSITION': 'right', 'PADDING_MODE': 'edge', 'FLIP_LR': True, 'COMPOSITE_OPTS': {'theta': 5, 'oversampling': 4, 'n_subsampling_y': 40, 'take_log': True, 'near_width': 40}, 'COR_OPTIONS': '', 'MOTOR_OFFSET': 0.0, 'X_ROTATION_AXIS_PIXEL_POSITION': 0.0}, 'gui': {'mode_is_lock': False, 'value_is_lock': False, 'auto_update_estimated_cor': True, 'y_axis_inverted': True}}, 'controlAreaVisible': True, 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\x017\x00\x00\x00\xe5\x00\x00\x06H\x00\x00\x03\xa6\x00\x00\x017\x00\x00\x01\n\x00\x00\x06H\x00\x00\x03\xa6\x00\x00\x00\x00\x00\x00\x00\x00\x07\x80\x00\x00\x017\x00\x00\x01\n\x00\x00\x06H\x00\x00\x03\xa6', '__version__': 1}</properties>
14
+ <properties node_id="1" format="literal">{'_scanIDs': ['hdf5:scan:/home/payno/Datasets/tomography/bamboo_hercules/bambou_hercules_0001/bambou_hercules_0001_0000.nx?path=/entry0000'], 'controlAreaVisible': True, 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\n\xa0\x00\x00\x01Z\x00\x00\x0b\xcb\x00\x00\x03\x06\x00\x00\n\xa0\x00\x00\x01Z\x00\x00\x0b\xcb\x00\x00\x03\x06\x00\x00\x00\x01\x00\x00\x00\x00\x07\x80\x00\x00\n\xa0\x00\x00\x01Z\x00\x00\x0b\xcb\x00\x00\x03\x06', '__version__': 1}</properties>
15
+ </node_properties>
16
+ <session_state>
17
+ <window_groups />
18
+ </session_state>
19
+ </scheme>
orangecontrib/tomwer/tutorials/volume_casting_on_slurm.ows ADDED
@@ -0,0 +1,54 @@
1
+ <?xml version='1.0' encoding='utf-8'?>
2
+ <scheme version="2.0" title="simple volume reconstruction (local)" description="">
3
+ <nodes>
4
+ <node id="0" name="scan selector" qualified_name="orangecontrib.tomwer.widgets.control.DataSelectorOW.DataSelectorOW" project_name="tomwer" version="" title="scan selector" position="(98.75, 395.0)" />
5
+ <node id="1" name="reduced darks and flats" qualified_name="orangecontrib.tomwer.widgets.reconstruction.DarkRefAndCopyOW.DarkRefAndCopyOW" project_name="tomwer" version="" title="reduced darks and flats" position="(250.25, 394.25)" />
6
+ <node id="2" name="center of rotation finder" qualified_name="orangecontrib.tomwer.widgets.reconstruction.AxisOW.AxisOW" project_name="tomwer" version="" title="default center of rotation" position="(391.25, 393.0)" />
7
+ <node id="3" name="nabu slice reconstruction" qualified_name="orangecontrib.tomwer.widgets.reconstruction.NabuOW.NabuOW" project_name="tomwer" version="" title="nabu slice reconstruction" position="(536.5, 392.25)" />
8
+ <node id="4" name="nabu volume reconstruction" qualified_name="orangecontrib.tomwer.widgets.reconstruction.NabuVolumeOW.NabuVolumeOW" project_name="tomwer" version="" title="nabu volume reconstruction" position="(725.75, 392.25)" />
9
+ <node id="5" name="cast volume" qualified_name="orangecontrib.tomwer.widgets.reconstruction.CastNabuVolumeOW.CastNabuVolumeOW" project_name="tomwer" version="" title="cast volume" position="(915.5, 383.0)" />
10
+ <node id="6" name="slurm cluster" qualified_name="orangecontrib.tomwer.widgets.cluster.SlurmClusterOW.SlurmClusterOW" project_name="tomwer" version="" title="slurm cluster" position="(727.75, 240.0)" />
11
+ <node id="7" name="future supervisor" qualified_name="orangecontrib.tomwer.widgets.cluster.FutureSupervisorOW.FutureSupervisorOW" project_name="tomwer" version="" title="future supervisor" position="(1101.0, 382.5)" />
12
+ <node id="8" name="volume selector" qualified_name="orangecontrib.tomwer.widgets.control.VolumeSelector.VolumeSelectorOW" project_name="tomwer" version="" title="volume selector" position="(813.5, 542.5)" />
13
+ </nodes>
14
+ <links>
15
+ <link id="0" source_node_id="0" sink_node_id="1" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
16
+ <link id="1" source_node_id="1" sink_node_id="2" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
17
+ <link id="2" source_node_id="2" sink_node_id="3" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
18
+ <link id="3" source_node_id="3" sink_node_id="4" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
19
+ <link id="4" source_node_id="4" sink_node_id="5" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
20
+ <link id="5" source_node_id="6" sink_node_id="5" source_channel="cluster_config" sink_channel="cluster_config" enabled="true" source_channel_id="config_out" sink_channel_id="cluster_in" />
21
+ <link id="6" source_node_id="5" sink_node_id="7" source_channel="future_tomo_obj" sink_channel="future_tomo_obj" enabled="true" source_channel_id="future_tomo_obj" sink_channel_id="future_tomo_obj" />
22
+ </links>
23
+ <annotations>
24
+ <arrow id="0" start="(707.0000000000001, 538.5)" end="(717.7500000000001, 472.5)" fill="#C1272D" />
25
+ <arrow id="1" start="(1009.25, 259.25)" end="(949.5, 332.75)" fill="#C1272D" />
26
+ <text id="2" type="text/plain" rect="(495.0, 556.5, 150.0, 69.0)" font-family="Ubuntu" font-size="16">cast a volume remotly (using slurm)</text>
27
+ <arrow id="3" start="(510.0000000000001, 553.75)" end="(516.2500000000001, 465.0)" fill="#C1272D" />
28
+ <text id="4" type="text/plain" rect="(1020.0, 213.25, 150.0, 50.0)" font-family="Sans Serif" font-size="16">Do the volume casting remotly</text>
29
+ <arrow id="5" start="(511.25, 190.00000000000006)" end="(662.4999999999999, 226.25000000000006)" fill="#C1272D" />
30
+ <text id="6" type="text/plain" rect="(286.25, 124.5, 213.75, 164.0)" font-family="Sans Serif" font-size="16">Define the node configuration to do the casting.
31
+ WARNING: casting is a pure IO operation. No need any GPU here.</text>
32
+ <text id="7" type="text/plain" rect="(1066.25, 498.25, 150.0, 126.0)" font-family="Sans Serif" font-size="16">Wait for casting to be done.
33
+ Needed if you want to resume processing once casting is done</text>
34
+ <arrow id="8" start="(1105.0000000000002, 492.5)" end="(1102.5000000000002, 441.25)" fill="#C1272D" />
35
+ <arrow id="9" start="(842.5, 710.0)" end="(820.0, 613.75)" fill="#C1272D" />
36
+ <text id="10" type="text/plain" rect="(765.0, 709.5, 150.0, 126.0)" font-family="Sans Serif" font-size="16">Alternative input to the cast volume.
37
+ If you want to launch it in post-processing</text>
38
+ </annotations>
39
+ <thumbnail />
40
+ <node_properties>
41
+ <properties node_id="0" format="literal">{'_scanIDs': [], 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
42
+ <properties node_id="1" format="literal">{'_ewoks_default_inputs': {'data': None, 'dark_ref_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
43
+ <properties node_id="2" format="literal">{'_ewoks_default_inputs': {'data': None, 'axis_params': {'MODE': 'manual', 'POSITION_VALUE': None, 'CALC_INPUT_TYPE': 'transmission_nopag', 'ANGLE_MODE': '0-180', 'USE_SINOGRAM': False, 'SINOGRAM_LINE': '', 'SINOGRAM_SUBSAMPLING': 10, 'AXIS_URL_1': '', 'AXIS_URL_2': '', 'LOOK_AT_STDMAX': False, 'NEAR_WX': 5, 'FINE_STEP_X': 0.1, 'SCALE_IMG2_TO_IMG1': False, 'NEAR_POSITION': 0.0, 'PADDING_MODE': 'edge', 'FLIP_LR': True, 'COMPOSITE_OPTS': {'theta': 10, 'n_subsampling_y': 10, 'oversampling': 4, 'take_log': True, 'near_pos': 0, 'near_width': 20}, 'SIDE': 'all', 'COR_OPTIONS': ''}, 'gui': {'mode_is_lock': False, 'value_is_lock': False, 'auto_update_estimated_cor': True}}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
44
+ <properties node_id="3" format="literal">{'_ewoks_default_inputs': {'data': None, 'nabu_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
45
+ <properties node_id="4" format="literal">{'_ewoks_default_inputs': {'data': None, 'nabu_volume_params': None, 'nabu_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
46
+ <properties node_id="5" format="literal">{'_ewoks_default_inputs': {'data': None, 'cast_volume_params': {}}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
47
+ <properties node_id="6" format="literal">{'_ewoks_default_inputs': {}, 'controlAreaVisible': True, 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\x02\xea\x00\x00\x01W\x00\x00\x04\x81\x00\x00\x03\x08\x00\x00\x02\xea\x00\x00\x01W\x00\x00\x04\x81\x00\x00\x03\x08\x00\x00\x00\x00\x00\x00\x00\x00\x07\x80\x00\x00\x02\xea\x00\x00\x01W\x00\x00\x04\x81\x00\x00\x03\x08', '__version__': 1}</properties>
48
+ <properties node_id="7" format="literal">{'_ewoks_default_inputs': {}, '_ewoks_execinfo': {}, '_ewoks_task_options': {}, '_ewoks_varinfo': {}, 'controlAreaVisible': True, 'default_inputs': {}, 'savedWidgetGeometry': None, '__version__': 1}</properties>
49
+ <properties node_id="8" format="literal">{'_scanIDs': [], 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
50
+ </node_properties>
51
+ <session_state>
52
+ <window_groups />
53
+ </session_state>
54
+ </scheme>
orangecontrib/tomwer/widgets/__init__.py CHANGED
@@ -22,10 +22,8 @@
22
22
  #
23
23
  #############################################################################
24
24
 
25
- try:
26
- from orangecanvas.utils.pkgmeta import get_distribution
27
- except ImportError:
28
- from pkg_resources import get_distribution
25
+ from ewoksorange.pkg_meta import get_distribution
26
+
29
27
 
30
28
  ICON = "../widgets/icons/tomwer.png"
31
29
 
@@ -40,7 +38,7 @@ def widget_discovery(discovery):
40
38
  "orangecontrib.tomwer.widgets.control",
41
39
  "orangecontrib.tomwer.widgets.debugtools",
42
40
  "orangecontrib.tomwer.widgets.edit",
43
- # "orangecontrib.tomwer.widgets.icat",
41
+ "orangecontrib.tomwer.widgets.dataportal",
44
42
  "orangecontrib.tomwer.widgets.reconstruction",
45
43
  # "orangecontrib.tomwer.widgets.stitching",
46
44
  "orangecontrib.tomwer.widgets.visualization",
orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py CHANGED
@@ -1,52 +1,30 @@
1
- # coding: utf-8
2
- # /*##########################################################################
3
- #
4
- # Copyright (c) 2016-2017 European Synchrotron Radiation Facility
5
- #
6
- # Permission is hereby granted, free of charge, to any person obtaining a copy
7
- # of this software and associated documentation files (the "Software"), to deal
8
- # in the Software without restriction, including without limitation the rights
9
- # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
10
- # copies of the Software, and to permit persons to whom the Software is
11
- # furnished to do so, subject to the following conditions:
12
- #
13
- # The above copyright notice and this permission notice shall be included in
14
- # all copies or substantial portions of the Software.
15
- #
16
- # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
17
- # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
18
- # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
19
- # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
20
- # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
21
- # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
22
- # THE SOFTWARE.
23
- #
24
- # ###########################################################################*/
25
-
26
- __authors__ = ["H. Payno"]
27
- __license__ = "MIT"
28
- __date__ = "14/10/2021"
29
-
1
+ from __future__ import annotations
30
2
 
31
3
  import time
32
4
 
33
5
  from orangewidget import gui
34
- from orangewidget.settings import Setting
35
- from orangewidget.widget import Input, Output, OWBaseWidget
6
+
7
+ # from orangewidget.widget import Input, Output, OWBaseWidget
8
+ from orangecontrib.tomwer.orange.managedprocess import TomwerWithStackStack
9
+ from ewokscore.missing_data import MISSING_DATA
10
+ from ewoksorange.gui.orange_imports import Input
11
+
36
12
  from processview.core.manager import DatasetState, ProcessManager
37
13
  from processview.core.superviseprocess import SuperviseProcess
38
14
  from silx.gui import qt
39
15
  from silx.gui.utils.concurrent import submitToQtMainThread
40
16
 
41
17
  from tomwer.core.futureobject import FutureTomwerObject
42
- from tomwer.core.scan.scanbase import TomwerScanBase
43
- from tomwer.core.volume.volumebase import TomwerVolumeBase
44
18
  from tomwer.gui.cluster.supervisor import (
45
19
  FutureTomwerScanObserverWidget as _FutureTomwerScanObserverWidget,
46
20
  )
21
+ from tomwer.core.process.cluster.supervisor import FutureSupervisorTask
47
22
 
48
23
 
49
- class FutureSupervisorOW(OWBaseWidget, openclass=True):
24
+ class FutureSupervisorOW(
25
+ TomwerWithStackStack,
26
+ ewokstaskclass=FutureSupervisorTask,
27
+ ):
50
28
  """
51
29
  Orange widget to define a slurm cluster as input of other
52
30
  widgets (based on nabu for now)
@@ -73,10 +51,9 @@ class FutureSupervisorOW(OWBaseWidget, openclass=True):
73
51
  want_control_area = False
74
52
  resizing_enabled = True
75
53
 
76
- _ewoks_default_inputs = Setting(dict())
77
-
78
54
  class Inputs:
79
- future_in = Input(
55
+ # redefine the input to allow multiple and default
56
+ future_tomo_obj = Input(
80
57
  name="future_tomo_obj",
81
58
  type=FutureTomwerObject,
82
59
  doc="data with some remote processing",
@@ -84,10 +61,6 @@ class FutureSupervisorOW(OWBaseWidget, openclass=True):
84
61
  default=True,
85
62
  )
86
63
 
87
- class Outputs:
88
- data = Output(name="data", type=TomwerScanBase)
89
- volume = Output(name="volume", type=TomwerVolumeBase)
90
-
91
64
  def __init__(self, parent=None):
92
65
  super().__init__(parent)
93
66
  # gui
@@ -119,21 +92,29 @@ class FutureSupervisorOW(OWBaseWidget, openclass=True):
119
92
  raise TypeError(
120
93
  f"future_tomo_obj is expected to be an instance of {FutureTomwerObject} and not {type(future_tomo_obj)}"
121
94
  )
122
- self._futureHasBeenConverted(future_tomo_obj, future_tomo_obj.tomo_obj)
123
-
124
- @Inputs.future_in
125
- def add(self, future_tomo_obj, signal_id=None):
126
- if future_tomo_obj is not None:
95
+ self._widget.removeFutureTomoObj(future_tomo_obj=future_tomo_obj)
96
+ self.execute_ewoks_task()
97
+
98
+ def handleNewSignals(self) -> None:
99
+ """Invoked by the workflow signal propagation manager after all
100
+ signals handlers have been called.
101
+
102
+ note: this widget can receive two signals: 'dataset' and 'colormap'. The 'colormap' is handled by
103
+ orange directly while the 'dataset' signal is handled by the ewoks task.
104
+ This function will be only triggered when the 'dataset' signal is send
105
+ """
106
+ # update GUI from received future_tomo_obj
107
+ # warning: this code will work because the task has only one input.
108
+ # so we can pass it directly to the widget.
109
+ # this won't be the case the task can have several input.
110
+ future_tomo_obj = self.get_task_input_value("future_tomo_obj", MISSING_DATA)
111
+ if future_tomo_obj is not MISSING_DATA:
127
112
  self._widget.addFutureTomoObj(future_tomo_obj=future_tomo_obj)
128
113
 
129
- def _futureHasBeenConverted(self, future_tomo_obj, tomo_obj):
130
- # clean client to free resources
131
- self._widget.removeFutureTomoObj(future_tomo_obj=future_tomo_obj)
132
- if tomo_obj is not None:
133
- if isinstance(tomo_obj, TomwerScanBase):
134
- self.Outputs.data.send(tomo_obj)
135
- elif isinstance(tomo_obj, TomwerVolumeBase):
136
- self.Outputs.volume.send(tomo_obj)
114
+ @Inputs.future_tomo_obj
115
+ def add(self, future_tomo_obj, signal_id=None):
116
+ # required because today ewoksorange is not handling multiple inputs
117
+ self.set_dynamic_input("future_tomo_obj", future_tomo_obj)
137
118
 
138
119
 
139
120
  class FutureTomwerObjectObserverWidget(
orangecontrib/tomwer/widgets/cluster/SlurmClusterOW.py CHANGED
@@ -1,31 +1,4 @@
1
- # coding: utf-8
2
- # /*##########################################################################
3
- #
4
- # Copyright (c) 2016-2017 European Synchrotron Radiation Facility
5
- #
6
- # Permission is hereby granted, free of charge, to any person obtaining a copy
7
- # of this software and associated documentation files (the "Software"), to deal
8
- # in the Software without restriction, including without limitation the rights
9
- # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
10
- # copies of the Software, and to permit persons to whom the Software is
11
- # furnished to do so, subject to the following conditions:
12
- #
13
- # The above copyright notice and this permission notice shall be included in
14
- # all copies or substantial portions of the Software.
15
- #
16
- # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
17
- # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
18
- # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
19
- # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
20
- # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
21
- # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
22
- # THE SOFTWARE.
23
- #
24
- # ###########################################################################*/
25
-
26
- __authors__ = ["H. Payno"]
27
- __license__ = "MIT"
28
- __date__ = "13/10/2021"
1
+ from __future__ import annotations
29
2
 
30
3
  import logging
31
4
 
@@ -35,7 +8,6 @@ from orangewidget import gui
35
8
  from orangewidget.settings import Setting
36
9
  from orangewidget.widget import Output, OWBaseWidget
37
10
 
38
- import tomwer.core.process.cluster.supervisor
39
11
  from tomwer.core.cluster import SlurmClusterConfiguration
40
12
  from tomwer.gui.cluster.slurm import SlurmSettingsWindow
41
13
 
@@ -61,8 +33,6 @@ class SlurmClusterOW(OWBaseWidget, openclass=True):
61
33
 
62
34
  _ewoks_default_inputs = Setting(dict())
63
35
 
64
- ewokstaskclass = tomwer.core.process.cluster.supervisor._SupervisorPlaceHolder
65
-
66
36
  class Outputs:
67
37
  config_out = Output(name="cluster_config", type=SlurmClusterConfiguration)
68
38
 
orangecontrib/tomwer/widgets/control/AdvancementOW.py CHANGED
@@ -1,32 +1,4 @@
1
- # coding: utf-8
2
- # /*##########################################################################
3
- #
4
- # Copyright (c) 2016-2017 European Synchrotron Radiation Facility
5
- #
6
- # Permission is hereby granted, free of charge, to any person obtaining a copy
7
- # of this software and associated documentation files (the "Software"), to deal
8
- # in the Software without restriction, including without limitation the rights
9
- # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
10
- # copies of the Software, and to permit persons to whom the Software is
11
- # furnished to do so, subject to the following conditions:
12
- #
13
- # The above copyright notice and this permission notice shall be included in
14
- # all copies or substantial portions of the Software.
15
- #
16
- # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
17
- # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
18
- # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
19
- # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
20
- # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
21
- # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
22
- # THE SOFTWARE.
23
- #
24
- # ###########################################################################*/
25
-
26
- __authors__ = ["C. Nemoz", "H. Payno"]
27
- __license__ = "MIT"
28
- __date__ = "10/01/2018"
29
-
1
+ from __future__ import annotations
30
2
 
31
3
  import logging
32
4
 
orangecontrib/tomwer/widgets/control/DataDiscoveryOW.py CHANGED
@@ -1,7 +1,8 @@
1
+ from __future__ import annotations
2
+
1
3
  import fnmatch
2
4
  import logging
3
5
  import os
4
- from typing import Optional
5
6
 
6
7
  import h5py
7
8
  from orangewidget import gui, widget
@@ -108,7 +109,7 @@ class DataDiscoveryOW(widget.OWBaseWidget, WidgetLongProcessing, openclass=True)
108
109
  def setSearchScanType(self, scan_type):
109
110
  self._widget.widget.setSearchScanType(scan_type)
110
111
 
111
- def setFilePattern(self, pattern: Optional[str]):
112
+ def setFilePattern(self, pattern: str | None):
112
113
  self._widget.widget.setLinuxFilePattern(pattern)
113
114
 
114
115
  def _switchObservation(self, *args, **kwargs):
@@ -120,9 +121,9 @@ class DataDiscoveryOW(widget.OWBaseWidget, WidgetLongProcessing, openclass=True)
120
121
  else:
121
122
  self.start_discovery()
122
123
 
123
- def start_discovery(self, wait: Optional[int] = None):
124
+ def start_discovery(self, wait: int | None = None):
124
125
  """start the discovery of scans
125
- :param int wait: optional waiting time in second
126
+ :param wait: optional waiting time in second
126
127
  """
127
128
  thread = self.getProcessingThread()
128
129
  if thread.isRunning():
orangecontrib/tomwer/widgets/control/DataListenerOW.py CHANGED
@@ -1,32 +1,4 @@
1
- # coding: utf-8
2
- # /*##########################################################################
3
- #
4
- # Copyright (c) 2016-2017 European Synchrotron Radiation Facility
5
- #
6
- # Permission is hereby granted, free of charge, to any person obtaining a copy
7
- # of this software and associated documentation files (the "Software"), to deal
8
- # in the Software without restriction, including without limitation the rights
9
- # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
10
- # copies of the Software, and to permit persons to whom the Software is
11
- # furnished to do so, subject to the following conditions:
12
- #
13
- # The above copyright notice and this permission notice shall be included in
14
- # all copies or substantial portions of the Software.
15
- #
16
- # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
17
- # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
18
- # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
19
- # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
20
- # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
21
- # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
22
- # THE SOFTWARE.
23
- #
24
- # ###########################################################################*/
25
-
26
- __authors__ = ["H. Payno"]
27
- __license__ = "MIT"
28
- __date__ = "06/03/2020"
29
-
1
+ from __future__ import annotations
30
2
 
31
3
  from orangewidget import gui, settings, widget
32
4
  from orangewidget.widget import Output
orangecontrib/tomwer/widgets/control/DataSelectorOW.py CHANGED
@@ -1,31 +1,4 @@
1
- # coding: utf-8
2
- # /*##########################################################################
3
- #
4
- # Copyright (c) 2016-2017 European Synchrotron Radiation Facility
5
- #
6
- # Permission is hereby granted, free of charge, to any person obtaining a copy
7
- # of this software and associated documentation files (the "Software"), to deal
8
- # in the Software without restriction, including without limitation the rights
9
- # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
10
- # copies of the Software, and to permit persons to whom the Software is
11
- # furnished to do so, subject to the following conditions:
12
- #
13
- # The above copyright notice and this permission notice shall be included in
14
- # all copies or substantial portions of the Software.
15
- #
16
- # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
17
- # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
18
- # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
19
- # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
20
- # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
21
- # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
22
- # THE SOFTWARE.
23
- #
24
- # ###########################################################################*/
25
-
26
- __authors__ = ["C. Nemoz", "H. Payno"]
27
- __license__ = "MIT"
28
- __date__ = "25/05/2018"
1
+ from __future__ import annotations
29
2
 
30
3
  import logging
31
4
 
@@ -127,9 +100,17 @@ class DataSelectorOW(OWBaseWidget, openclass=True):
127
100
 
128
101
  def keyPressEvent(self, event):
129
102
  """
130
- To shortcut orange and make sure the `delete` key will be interpreted we need to overwrite this function
103
+ Forward:
104
+ * delete key (shortcut orange and make sure the `delete` key will be interpreted we need to overwrite this function)
105
+ * Ctrl + A to select all the scan
131
106
  """
132
- if event.key() == qt.Qt.Key_Delete:
107
+ modifiers = event.modifiers()
108
+ key = event.key()
109
+
110
+ if key == qt.Qt.Key_A and modifiers == qt.Qt.KeyboardModifier.ControlModifier:
111
+ self.widget.dataList.keyPressEvent(event)
112
+
113
+ if key == qt.Qt.Key_Delete:
133
114
  self.widget.removeSelectedDatasets()
134
115
  else:
135
116
  super().keyPressEvent(event)
orangecontrib/tomwer/widgets/control/DataTransfertOW.py CHANGED
@@ -1,31 +1,4 @@
1
- # coding: utf-8
2
- # /*##########################################################################
3
- #
4
- # Copyright (c) 2016-2017 European Synchrotron Radiation Facility
5
- #
6
- # Permission is hereby granted, free of charge, to any person obtaining a copy
7
- # of this software and associated documentation files (the "Software"), to deal
8
- # in the Software without restriction, including without limitation the rights
9
- # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
10
- # copies of the Software, and to permit persons to whom the Software is
11
- # furnished to do so, subject to the following conditions:
12
- #
13
- # The above copyright notice and this permission notice shall be included in
14
- # all copies or substantial portions of the Software.
15
- #
16
- # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
17
- # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
18
- # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
19
- # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
20
- # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
21
- # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
22
- # THE SOFTWARE.
23
- #
24
- # ###########################################################################*/
25
-
26
- __authors__ = ["C. Nemoz", "H. Payno"]
27
- __license__ = "MIT"
28
- __date__ = "07/12/2016"
1
+ from __future__ import annotations
29
2
 
30
3
  import functools
31
4
  import logging
@@ -81,6 +54,7 @@ class DataTransfertOW(SuperviseOW):
81
54
  """Parameters directly editabled from the TOFU interface"""
82
55
 
83
56
  scanready = qt.Signal(TomwerScanBase)
57
+ """emit when scan ready"""
84
58
 
85
59
  class Inputs:
86
60
  data = Input(name="data", type=TomwerScanBase)
orangecontrib/tomwer/widgets/control/DataValidatorOW.py CHANGED
@@ -1,31 +1,4 @@
1
- # coding: utf-8
2
- # /*##########################################################################
3
- #
4
- # Copyright (c) 2016-2017 European Synchrotron Radiation Facility
5
- #
6
- # Permission is hereby granted, free of charge, to any person obtaining a copy
7
- # of this software and associated documentation files (the "Software"), to deal
8
- # in the Software without restriction, including without limitation the rights
9
- # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
10
- # copies of the Software, and to permit persons to whom the Software is
11
- # furnished to do so, subject to the following conditions:
12
- #
13
- # The above copyright notice and this permission notice shall be included in
14
- # all copies or substantial portions of the Software.
15
- #
16
- # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
17
- # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
18
- # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
19
- # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
20
- # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
21
- # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
22
- # THE SOFTWARE.
23
- #
24
- # ###########################################################################*/
25
-
26
- __authors__ = ["H. Payno"]
27
- __license__ = "MIT"
28
- __date__ = "21/07/2020"
1
+ from __future__ import annotations
29
2
 
30
3
  import logging
31
4