PyPI - tomwer - Versions diffs - 1.3.26__py3-none-any.whl → 1.4.0__py3-none-any.whl - Mend

tomwer 1.3.26py3-none-any.whl → 1.4.0py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (638) hide show

orangecontrib/tomwer/orange/managedprocess.py +1 -29
orangecontrib/tomwer/orange/settings.py +2 -28
orangecontrib/tomwer/tests/TestAcquisition.py +220 -0
orangecontrib/tomwer/tutorials/append_raw_darks_and_flats_frames_to_NXtomos.ows +2 -2
orangecontrib/tomwer/tutorials/copy_reduced_darks_and_flats_meth1.ows +1 -1
orangecontrib/tomwer/tutorials/{icat_publication.ows → drac_publication.ows} +7 -21
orangecontrib/tomwer/tutorials/id16b/ID16b_full_volume.ows +22 -0
orangecontrib/tomwer/tutorials/id16b/ID16b_insitu.ows +302 -0
orangecontrib/tomwer/tutorials/id16b/ID16b_normalization.ows +218 -0
orangecontrib/tomwer/tutorials/simple_volume_to_slurm_reconstruction.ows +29 -24
orangecontrib/tomwer/tutorials/test_cor.ows +19 -0
orangecontrib/tomwer/tutorials/volume_casting_on_slurm.ows +54 -0
orangecontrib/tomwer/widgets/__init__.py +3 -5
orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py +35 -54
orangecontrib/tomwer/widgets/cluster/SlurmClusterOW.py +1 -31
orangecontrib/tomwer/widgets/control/AdvancementOW.py +1 -29
orangecontrib/tomwer/widgets/control/DataDiscoveryOW.py +5 -4
orangecontrib/tomwer/widgets/control/DataListenerOW.py +1 -29
orangecontrib/tomwer/widgets/control/DataSelectorOW.py +11 -30
orangecontrib/tomwer/widgets/control/DataTransfertOW.py +2 -28
orangecontrib/tomwer/widgets/control/DataValidatorOW.py +1 -28
orangecontrib/tomwer/widgets/control/DataWatcherOW.py +1 -28
orangecontrib/tomwer/widgets/control/EDF2NXTomomillOW.py +48 -51
orangecontrib/tomwer/widgets/control/EmailOW.py +12 -2
orangecontrib/tomwer/widgets/control/FilterOW.py +1 -28
orangecontrib/tomwer/widgets/control/NXTomomillOW.py +37 -53
orangecontrib/tomwer/widgets/control/NXtomoConcatenate.py +21 -20
orangecontrib/tomwer/widgets/control/NotifierOW.py +9 -28
orangecontrib/tomwer/widgets/control/ReduceDarkFlatSelectorOW.py +3 -2
orangecontrib/tomwer/widgets/control/SingleTomoObjOW.py +1 -27
orangecontrib/tomwer/widgets/control/TimerOW.py +9 -28
orangecontrib/tomwer/widgets/control/TomoObjSeriesOW.py +58 -0
orangecontrib/tomwer/widgets/control/VolumeSelector.py +8 -30
orangecontrib/tomwer/widgets/control/icons/nxtomomill.svg +173 -119
orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.png +0 -0
orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.svg +55 -195
orangecontrib/tomwer/widgets/control/icons/{tomoobjserie.svg → tomoobjseries.svg} +2 -2
orangecontrib/tomwer/widgets/dataportal/PublishProcessedDataOW.py +172 -0
orangecontrib/tomwer/widgets/{icat → dataportal}/__init__.py +2 -2
orangecontrib/tomwer/widgets/debugtools/DatasetGeneratorOW.py +2 -29
orangecontrib/tomwer/widgets/debugtools/ObjectInspectorOW.py +1 -29
orangecontrib/tomwer/widgets/edit/DarkFlatPatchOW.py +48 -73
orangecontrib/tomwer/widgets/edit/ImageKeyEditorOW.py +48 -75
orangecontrib/tomwer/widgets/edit/ImageKeyUpgraderOW.py +5 -30
orangecontrib/tomwer/widgets/edit/NXtomoEditorOW.py +51 -52
orangecontrib/tomwer/widgets/other/PythonScriptOW.py +22 -10
orangecontrib/tomwer/widgets/reconstruction/AxisOW.py +51 -60
orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py +22 -68
orangecontrib/tomwer/widgets/reconstruction/DarkRefAndCopyOW.py +3 -30
orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py +21 -19
orangecontrib/tomwer/widgets/reconstruction/NabuOW.py +7 -70
orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py +41 -84
orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py +15 -40
orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py +13 -35
orangecontrib/tomwer/widgets/reconstruction/SinoNormOW.py +2 -30
orangecontrib/tomwer/widgets/stitching/ZStitchingConfigOW.py +11 -11
orangecontrib/tomwer/widgets/utils.py +2 -29
orangecontrib/tomwer/widgets/visualization/DataViewerOW.py +1 -27
orangecontrib/tomwer/widgets/visualization/DiffViewerOW.py +1 -27
orangecontrib/tomwer/widgets/visualization/NXtomoMetadataViewerOW.py +1 -1
orangecontrib/tomwer/widgets/visualization/RadioStackOW.py +2 -28
orangecontrib/tomwer/widgets/visualization/SampleMovedOW.py +1 -27
orangecontrib/tomwer/widgets/visualization/SinogramViewerOW.py +1 -27
orangecontrib/tomwer/widgets/visualization/SliceStackOW.py +2 -28
tomwer/__init__.py +3 -28
tomwer/__main__.py +8 -4
tomwer/app/__init__.py +2 -0
tomwer/app/axis.py +8 -10
tomwer/app/canvas.py +23 -29
tomwer/app/canvas_launcher/config.py +14 -102
tomwer/app/canvas_launcher/environ.py +5 -8
tomwer/app/canvas_launcher/mainwindow.py +175 -69
tomwer/app/canvas_launcher/splash.py +1 -3
tomwer/app/canvas_launcher/utils.py +47 -0
tomwer/app/canvas_launcher/widgetsscheme.py +3 -10
tomwer/app/diffframe.py +2 -0
tomwer/app/imagekeyeditor.py +2 -1
tomwer/app/imagekeyupgrader.py +2 -0
tomwer/app/multicor.py +5 -2
tomwer/app/multipag.py +16 -5
tomwer/app/nabuapp.py +2 -1
tomwer/app/nxtomoeditor.py +17 -12
tomwer/app/patchrawdarkflat.py +2 -0
tomwer/app/radiostack.py +3 -2
tomwer/app/reducedarkflat.py +3 -0
tomwer/app/samplemoved.py +2 -0
tomwer/app/scanviewer.py +2 -0
tomwer/app/sinogramviewer.py +2 -0
tomwer/app/slicestack.py +11 -13
tomwer/app/stitching/common.py +431 -0
tomwer/app/stopdatalistener.py +3 -0
tomwer/app/ystitching.py +26 -0
tomwer/app/zstitching.py +8 -363
tomwer/core/__init__.py +2 -28
tomwer/core/cluster/__init__.py +3 -0
tomwer/core/cluster/cluster.py +10 -26
tomwer/core/futureobject.py +17 -43
tomwer/core/log/__init__.py +2 -0
tomwer/core/log/processlog.py +0 -28
tomwer/core/process/cluster/supervisor.py +52 -34
tomwer/core/process/conditions/filters.py +3 -28
tomwer/core/process/control/datalistener/datalistener.py +7 -75
tomwer/core/process/control/datalistener/rpcserver.py +8 -38
tomwer/core/process/control/datawatcher/datawatcher.py +11 -40
tomwer/core/process/control/datawatcher/datawatcherobserver.py +30 -64
tomwer/core/process/control/datawatcher/datawatcherprocess.py +11 -32
tomwer/core/process/control/datawatcher/edfdwprocess.py +2 -27
tomwer/core/process/control/datawatcher/hdf5dwprocess.py +1 -26
tomwer/core/process/control/datawatcher/status.py +1 -26
tomwer/core/process/control/emailnotifier.py +11 -23
tomwer/core/process/control/nxtomoconcatenate.py +20 -18
tomwer/core/process/control/nxtomomill.py +9 -44
tomwer/core/process/control/scanlist.py +0 -27
tomwer/core/process/control/scantransfer.py +15 -13
tomwer/core/process/control/scanvalidator.py +4 -30
tomwer/core/process/control/{test → tests}/test_concatenate_nxtomos.py +5 -5
tomwer/core/process/control/timer.py +1 -27
tomwer/core/process/control/tomoobjseries.py +12 -0
tomwer/core/process/drac/binning.py +37 -0
tomwer/core/process/drac/dracbase.py +170 -0
tomwer/core/process/drac/gallery.py +109 -0
tomwer/core/process/drac/output.py +12 -0
tomwer/core/process/drac/processeddataset.py +147 -0
tomwer/core/process/drac/publish.py +118 -0
tomwer/core/process/drac/rawdataset.py +142 -0
tomwer/core/process/drac/tests/test_gallery.py +71 -0
tomwer/core/process/drac/tests/test_icat_processed_dataset.py +80 -0
tomwer/core/process/drac/tests/test_icat_raw_dataset.py +90 -0
tomwer/core/process/edit/darkflatpatch.py +1 -28
tomwer/core/process/edit/imagekeyeditor.py +4 -32
tomwer/core/process/edit/nxtomoeditor.py +307 -0
tomwer/core/process/edit/tests/test_darkflatpatch.py +243 -0
tomwer/core/process/edit/tests/test_imagekey_editor.py +99 -0
tomwer/core/process/output.py +9 -2
tomwer/core/process/reconstruction/__init__.py +0 -26
tomwer/core/process/reconstruction/axis/anglemode.py +1 -29
tomwer/core/process/reconstruction/axis/axis.py +47 -804
tomwer/core/process/reconstruction/axis/mode.py +89 -25
tomwer/core/process/reconstruction/axis/params.py +131 -283
tomwer/core/process/reconstruction/axis/projectiontype.py +0 -28
tomwer/core/process/reconstruction/axis/side.py +8 -0
tomwer/core/process/reconstruction/darkref/darkrefs.py +14 -39
tomwer/core/process/reconstruction/darkref/darkrefscopy.py +7 -39
tomwer/core/process/reconstruction/darkref/params.py +1 -28
tomwer/core/process/reconstruction/nabu/castvolume.py +19 -34
tomwer/core/process/reconstruction/nabu/nabucommon.py +18 -43
tomwer/core/process/reconstruction/nabu/nabuscores.py +64 -68
tomwer/core/process/reconstruction/nabu/nabuslices.py +63 -105
tomwer/core/process/reconstruction/nabu/nabuvolume.py +44 -70
tomwer/core/process/reconstruction/nabu/plane.py +10 -0
tomwer/core/process/reconstruction/nabu/settings.py +1 -28
tomwer/core/process/reconstruction/nabu/target.py +0 -28
tomwer/core/process/reconstruction/nabu/test/test_castvolume.py +116 -0
tomwer/core/process/reconstruction/nabu/test/test_nabu_utils.py +277 -0
tomwer/core/process/reconstruction/nabu/test/test_nabunormalization.py +199 -0
tomwer/core/process/reconstruction/nabu/utils.py +11 -60
tomwer/core/process/reconstruction/normalization/normalization.py +2 -32
tomwer/core/process/reconstruction/normalization/params.py +3 -35
tomwer/core/process/reconstruction/output.py +14 -19
tomwer/core/process/reconstruction/paramsbase.py +4 -33
tomwer/core/process/reconstruction/saaxis/params.py +5 -33
tomwer/core/process/reconstruction/saaxis/saaxis.py +22 -51
tomwer/core/process/reconstruction/sadeltabeta/params.py +2 -31
tomwer/core/process/reconstruction/sadeltabeta/sadeltabeta.py +18 -46
tomwer/core/process/reconstruction/scores/params.py +9 -39
tomwer/core/process/reconstruction/scores/scores.py +10 -42
tomwer/core/process/reconstruction/tests/__init__.py +0 -0
tomwer/core/process/reconstruction/tests/test_axis.py +46 -0
tomwer/core/process/reconstruction/tests/test_darkref.py +33 -0
tomwer/core/process/reconstruction/{test → tests}/test_saaxis.py +1 -27
tomwer/core/process/reconstruction/tests/test_sadeltabeta.py +48 -0
tomwer/core/process/reconstruction/{test → tests}/test_utils.py +4 -4
tomwer/core/process/reconstruction/utils/cor.py +8 -4
tomwer/core/process/script/python.py +1 -27
tomwer/core/process/script/tests/test_script.py +41 -0
tomwer/core/process/stitching/metadataholder.py +5 -4
tomwer/core/process/stitching/nabustitcher.py +35 -5
tomwer/core/process/stitching/tests/test_metadataholder.py +17 -0
tomwer/core/process/task.py +20 -63
tomwer/core/process/tests/__init__.py +0 -0
tomwer/core/process/{test → tests}/test_conditions.py +1 -28
tomwer/core/process/{test → tests}/test_dark_and_flat.py +1 -27
tomwer/core/process/{test → tests}/test_data_listener.py +1 -27
tomwer/core/process/{test → tests}/test_data_transfer.py +2 -28
tomwer/core/process/{test → tests}/test_data_watcher.py +1 -27
tomwer/core/process/{test → tests}/test_nabu.py +2 -33
tomwer/core/process/{test → tests}/test_normalization.py +1 -26
tomwer/core/process/{test → tests}/test_timer.py +1 -27
tomwer/core/process/utils.py +2 -31
tomwer/core/process/visualization/dataviewer.py +1 -26
tomwer/core/process/visualization/diffviewer.py +1 -26
tomwer/core/process/visualization/imagestackviewer.py +0 -26
tomwer/core/process/visualization/radiostack.py +0 -26
tomwer/core/process/visualization/samplemoved.py +0 -28
tomwer/core/process/visualization/sinogramviewer.py +0 -27
tomwer/core/process/visualization/slicestack.py +0 -28
tomwer/core/process/visualization/tests/test_data_viewer.py +12 -0
tomwer/core/process/visualization/tests/test_diff_viewer.py +12 -0
tomwer/core/process/visualization/tests/test_image_stack_viewer.py +14 -0
tomwer/core/process/visualization/tests/test_radio_stack.py +12 -0
tomwer/core/process/visualization/tests/test_sample_moved.py +14 -0
tomwer/core/process/visualization/tests/test_sinogram_viewer.py +13 -0
tomwer/core/process/visualization/tests/test_slice_stack.py +13 -0
tomwer/core/process/visualization/tests/test_volume_viewer.py +12 -0
tomwer/core/process/visualization/volumeviewer.py +0 -29
tomwer/core/scan/__init__.py +3 -27
tomwer/core/scan/blissscan.py +5 -34
tomwer/core/scan/edfscan.py +19 -53
tomwer/core/scan/hdf5scan.py +2 -2
tomwer/core/scan/nxtomoscan.py +48 -54
tomwer/core/scan/scanbase.py +107 -203
tomwer/core/scan/scanfactory.py +11 -41
tomwer/core/scan/tests/__init__.py +0 -0
tomwer/core/scan/tests/test_edf.py +25 -0
tomwer/core/scan/tests/test_future_scan.py +35 -0
tomwer/core/scan/tests/test_nxtomoscan.py +143 -0
tomwer/core/scan/tests/test_process_registration.py +64 -0
tomwer/core/settings.py +18 -40
tomwer/core/tests/__init__.py +0 -0
tomwer/core/tests/test_scanutils.py +26 -0
tomwer/core/{test → tests}/test_utils.py +1 -28
tomwer/core/tomwer_object.py +4 -0
tomwer/core/utils/__init__.py +2 -0
tomwer/core/utils/char.py +0 -28
tomwer/core/utils/deprecation.py +12 -38
tomwer/core/utils/dictutils.py +1 -3
tomwer/core/utils/ftseriesutils.py +1 -27
tomwer/core/utils/gpu.py +0 -28
tomwer/core/utils/image.py +8 -39
tomwer/core/utils/locker.py +1 -28
tomwer/core/utils/logconfig.py +0 -27
tomwer/core/utils/normalization.py +4 -31
tomwer/core/utils/nxtomoutils.py +8 -38
tomwer/core/utils/resource.py +0 -26
tomwer/core/utils/scanutils.py +23 -52
tomwer/core/utils/slurm.py +7 -30
tomwer/core/utils/spec.py +6 -6
tomwer/core/utils/tests/__init__.py +0 -0
tomwer/core/utils/tests/test_image.py +30 -0
tomwer/core/utils/tests/test_nxtomo.py +38 -0
tomwer/core/utils/tests/test_scan_utils.py +46 -0
tomwer/core/utils/tests/test_time.py +6 -0
tomwer/core/utils/threads.py +0 -26
tomwer/core/utils/time.py +0 -27
tomwer/core/volume/__init__.py +4 -0
tomwer/core/volume/edfvolume.py +1 -28
tomwer/core/volume/hdf5volume.py +1 -28
tomwer/core/volume/jp2kvolume.py +1 -27
tomwer/core/volume/rawvolume.py +1 -28
tomwer/core/volume/tests/test_volumes.py +21 -0
tomwer/core/volume/tiffvolume.py +1 -28
tomwer/core/volume/volumebase.py +5 -0
tomwer/core/volume/volumefactory.py +7 -33
tomwer/gui/__init__.py +0 -28
tomwer/gui/cluster/__init__.py +2 -0
tomwer/gui/cluster/slurm.py +297 -95
tomwer/gui/cluster/supervisor.py +1 -27
tomwer/gui/cluster/tests/__init__.py +0 -0
tomwer/gui/cluster/{test → tests}/test_cluster.py +21 -26
tomwer/gui/cluster/{test → tests}/test_supervisor.py +1 -27
tomwer/gui/conditions/__init__.py +2 -0
tomwer/gui/conditions/filter.py +1 -26
tomwer/gui/configuration/__init__.py +2 -0
tomwer/gui/control/__init__.py +2 -0
tomwer/gui/control/actions.py +2 -28
tomwer/gui/control/datadiscovery.py +4 -3
tomwer/gui/control/datalist.py +64 -69
tomwer/gui/control/datalistener.py +1 -39
tomwer/gui/control/datareacheractions.py +1 -28
tomwer/gui/control/datatransfert.py +2 -29
tomwer/gui/control/datavalidator.py +3 -37
tomwer/gui/control/datawatcher/__init__.py +0 -28
tomwer/gui/control/datawatcher/configuration.py +1 -28
tomwer/gui/control/datawatcher/datawatcher.py +3 -32
tomwer/gui/control/datawatcher/datawatcherobserver.py +2 -28
tomwer/gui/control/history.py +5 -35
tomwer/gui/control/nxtomomill.py +3 -30
tomwer/gui/control/observations.py +61 -55
tomwer/gui/control/reducedarkflatselector.py +24 -20
tomwer/gui/control/scanselectorwidget.py +2 -28
tomwer/gui/control/selectorwidgetbase.py +17 -17
tomwer/gui/control/series/__init__.py +0 -0
tomwer/gui/control/{serie/seriecreator.py → series/seriescreator.py} +214 -235
tomwer/gui/control/series/serieswaiter.py +0 -0
tomwer/gui/control/series/test/test_creator.py +424 -0
tomwer/gui/control/series/test/test_nxtomo_concatenate.py +21 -0
tomwer/gui/control/singletomoobj.py +1 -1
tomwer/gui/control/tests/__init__.py +0 -0
tomwer/gui/control/tests/test_datalist.py +47 -0
tomwer/gui/control/{test → tests}/test_datalistener.py +1 -28
tomwer/gui/control/tests/test_datavalidator.py +27 -0
tomwer/gui/control/{test → tests}/test_inputwidget.py +1 -27
tomwer/gui/control/tests/test_process_manager.py +38 -0
tomwer/gui/control/tests/test_scan_observations.py +23 -0
tomwer/gui/control/tests/test_scanselector.py +42 -0
tomwer/gui/control/{test → tests}/test_scanvalidator.py +1 -27
tomwer/gui/control/{test → tests}/test_volume_dialog.py +2 -30
tomwer/gui/control/{test → tests}/test_volumeselector.py +1 -27
tomwer/gui/control/volumeselectorwidget.py +2 -30
tomwer/gui/dataportal/__init__.py +2 -0
tomwer/gui/{icat → dataportal}/createscreenshots.py +3 -2
tomwer/gui/dataportal/gallery.py +133 -0
tomwer/gui/dataportal/outputformat.py +0 -0
tomwer/gui/dataportal/publish.py +96 -0
tomwer/gui/dataportal/tests/test_create_screenshots_gui.py +23 -0
tomwer/gui/dataportal/tests/test_gallery_gui.py +21 -0
tomwer/gui/debugtools/__init__.py +2 -0
tomwer/gui/debugtools/datasetgenerator.py +1 -30
tomwer/gui/debugtools/objectinspector.py +1 -29
tomwer/gui/dialog/QDataDialog.py +89 -0
tomwer/gui/{qfolderdialog.py → dialog/QVolumeDialog.py} +8 -107
tomwer/gui/dialog/__init__.py +1 -0
tomwer/gui/edit/__init__.py +2 -0
tomwer/gui/edit/dkrfpatch.py +52 -87
tomwer/gui/edit/imagekeyeditor.py +18 -54
tomwer/gui/edit/nxtomoeditor.py +113 -300
tomwer/gui/edit/nxtomowarmer.py +3 -2
tomwer/gui/edit/tests/__init__.py +0 -0
tomwer/gui/edit/{test → tests}/test_dkrf_patch.py +3 -29
tomwer/gui/edit/{test → tests}/test_image_key_editor.py +1 -27
tomwer/gui/edit/{test → tests}/test_nx_editor.py +45 -23
tomwer/gui/fonts.py +5 -0
tomwer/gui/icons.py +28 -66
tomwer/gui/illustrations.py +4 -34
tomwer/gui/imagefromfile.py +5 -30
tomwer/gui/metadataloader.py +36 -0
tomwer/gui/qconfigfile.py +3 -0
tomwer/gui/qlefilesystem.py +3 -0
tomwer/gui/reconstruction/__init__.py +2 -0
tomwer/gui/reconstruction/axis/AxisMainWindow.py +275 -0
tomwer/gui/reconstruction/axis/AxisOptionsWidget.py +313 -0
tomwer/gui/reconstruction/axis/AxisSettingsWidget.py +797 -0
tomwer/gui/reconstruction/axis/AxisWidget.py +534 -0
tomwer/gui/reconstruction/axis/CalculationWidget.py +218 -0
tomwer/gui/reconstruction/axis/CompareImages.py +11 -44
tomwer/gui/reconstruction/axis/ControlWidget.py +285 -0
tomwer/gui/reconstruction/axis/EstimatedCORWidget.py +394 -0
tomwer/gui/reconstruction/axis/EstimatedCorComboBox.py +118 -0
tomwer/gui/reconstruction/axis/InputWidget.py +347 -0
tomwer/gui/reconstruction/axis/ManualFramesSelection.py +168 -0
tomwer/gui/reconstruction/axis/__init__.py +2 -2
tomwer/gui/reconstruction/darkref/__init__.py +0 -27
tomwer/gui/reconstruction/darkref/darkrefcopywidget.py +5 -34
tomwer/gui/reconstruction/darkref/darkrefwidget.py +1 -27
tomwer/gui/reconstruction/nabu/castvolume.py +40 -59
tomwer/gui/reconstruction/nabu/check.py +7 -33
tomwer/gui/reconstruction/nabu/nabuconfig/base.py +7 -34
tomwer/gui/reconstruction/nabu/nabuconfig/ctf.py +6 -5
tomwer/gui/reconstruction/nabu/nabuconfig/nabuconfig.py +10 -69
tomwer/gui/reconstruction/nabu/nabuconfig/output.py +3 -47
tomwer/gui/reconstruction/nabu/nabuconfig/phase.py +54 -36
tomwer/gui/reconstruction/nabu/nabuconfig/preprocessing.py +103 -54
tomwer/gui/reconstruction/nabu/nabuconfig/reconstruction.py +116 -65
tomwer/gui/reconstruction/nabu/nabuflow.py +31 -61
tomwer/gui/reconstruction/nabu/platform.py +94 -0
tomwer/gui/reconstruction/nabu/slices.py +81 -45
tomwer/gui/reconstruction/nabu/slurm.py +1 -27
tomwer/gui/reconstruction/nabu/test/test_cast_volume.py +82 -0
tomwer/gui/reconstruction/nabu/test/test_check.py +66 -0
tomwer/gui/reconstruction/nabu/test/test_ctf.py +46 -0
tomwer/gui/reconstruction/nabu/test/test_helical.py +21 -0
tomwer/gui/reconstruction/nabu/test/test_nabu_preprocessing.py +81 -0
tomwer/gui/reconstruction/nabu/volume.py +62 -90
tomwer/gui/reconstruction/normalization/intensity.py +5 -32
tomwer/gui/reconstruction/normalization/test/test_intensity.py +89 -0
tomwer/gui/reconstruction/saaxis/corrangeselector.py +32 -56
tomwer/gui/reconstruction/saaxis/dimensionwidget.py +56 -96
tomwer/gui/reconstruction/saaxis/saaxis.py +17 -38
tomwer/gui/reconstruction/saaxis/sliceselector.py +8 -39
tomwer/gui/reconstruction/sadeltabeta/saadeltabeta.py +19 -37
tomwer/gui/reconstruction/scores/control.py +2 -30
tomwer/gui/reconstruction/scores/scoreplot.py +23 -49
tomwer/gui/reconstruction/tests/__init__.py +0 -0
tomwer/gui/reconstruction/{test → tests}/test_axis.py +23 -49
tomwer/gui/reconstruction/{test → tests}/test_nabu.py +16 -31
tomwer/gui/reconstruction/{test → tests}/test_saaxis.py +10 -37
tomwer/gui/reconstruction/{test → tests}/test_sadeltabeta.py +1 -26
tomwer/gui/samplemoved/__init__.py +2 -30
tomwer/gui/samplemoved/selectiontable.py +3 -33
tomwer/gui/settings.py +7 -0
tomwer/gui/stackplot.py +33 -661
tomwer/gui/stacks.py +261 -135
tomwer/gui/stitching/SingleAxisStitchingWidget.py +326 -0
tomwer/gui/stitching/StitchingOptionsWidget.py +438 -0
tomwer/gui/stitching/StitchingWindow.py +586 -0
tomwer/gui/stitching/__init__.py +2 -0
tomwer/gui/stitching/alignment.py +90 -0
tomwer/gui/stitching/axisorderedlist.py +44 -34
tomwer/gui/stitching/config/axisparams.py +25 -11
tomwer/gui/stitching/config/output.py +6 -5
tomwer/gui/stitching/config/positionoveraxis.py +313 -51
tomwer/gui/stitching/config/stitchingstrategies.py +22 -16
tomwer/gui/stitching/config/tests/test_axisparams.py +25 -0
tomwer/gui/stitching/config/tomoobjdetails.py +3 -5
tomwer/gui/stitching/normalization.py +1 -0
tomwer/gui/stitching/preview.py +59 -0
tomwer/gui/stitching/singleaxis.py +57 -0
tomwer/gui/stitching/stitchandbackground.py +3 -2
tomwer/gui/stitching/stitching_preview.py +44 -36
tomwer/gui/stitching/stitching_raw.py +5 -3
tomwer/gui/stitching/tests/test_ZStitchingWindow.py +88 -0
tomwer/gui/stitching/tests/test_axis_ordered_list.py +21 -0
tomwer/gui/stitching/tests/test_normalization.py +27 -0
tomwer/gui/stitching/tests/test_preview.py +68 -0
tomwer/gui/stitching/tests/test_stitching_raw.py +110 -0
tomwer/gui/stitching/tests/utils.py +92 -0
tomwer/gui/stitching/utils.py +14 -0
tomwer/gui/stitching/z_stitching/fineestimation.py +5 -33
tomwer/gui/stitching/z_stitching/tests/test_fine_estimation.py +35 -0
tomwer/gui/stitching/z_stitching/tests/test_raw_estimation.py +215 -0
tomwer/gui/stitching/z_stitching/tests/test_stitching_window.py +51 -0
tomwer/gui/tests/__init__.py +0 -0
tomwer/gui/tests/test_axis_gui.py +43 -0
tomwer/gui/{test → tests}/test_qfolder_dialog.py +1 -1
tomwer/gui/utils/RangeWidget.py +44 -0
tomwer/gui/utils/buttons.py +4 -3
tomwer/gui/utils/completer.py +2 -33
tomwer/gui/utils/flow.py +11 -40
tomwer/gui/utils/gpu.py +60 -0
tomwer/gui/utils/illustrations.py +1 -26
tomwer/gui/utils/inputwidget.py +35 -73
tomwer/gui/utils/lineselector/lineselector.py +9 -46
tomwer/gui/utils/loadingmode.py +81 -0
tomwer/gui/utils/qt_utils.py +9 -0
tomwer/gui/utils/sandboxes.py +1 -26
tomwer/gui/utils/scandescription.py +2 -31
tomwer/gui/utils/scrollarea.py +6 -55
tomwer/gui/utils/slider.py +4 -28
tomwer/gui/utils/splashscreen.py +0 -28
tomwer/gui/utils/step.py +14 -13
tomwer/gui/utils/tests/test_completer.py +41 -0
tomwer/gui/utils/tests/test_line_selector.py +21 -0
tomwer/gui/utils/tests/test_splashscreen.py +8 -0
tomwer/gui/utils/tests/test_vignettes.py +68 -0
tomwer/gui/utils/unitsystem.py +15 -69
tomwer/gui/utils/utils.py +4 -5
tomwer/gui/utils/vignettes.py +10 -41
tomwer/gui/utils/waiterthread.py +0 -26
tomwer/gui/visualization/__init__.py +2 -0
tomwer/gui/visualization/dataviewer.py +68 -421
tomwer/gui/visualization/diffviewer/diffviewer.py +2 -30
tomwer/gui/visualization/diffviewer/shiftwidget.py +4 -29
tomwer/gui/visualization/fullscreenplot.py +5 -5
tomwer/gui/visualization/imagestack.py +403 -0
tomwer/gui/visualization/nxtomometadata.py +0 -4
tomwer/gui/visualization/reconstructionparameters.py +14 -32
tomwer/gui/visualization/scanoverview.py +33 -66
tomwer/gui/visualization/sinogramviewer.py +2 -28
tomwer/gui/visualization/test/__init__.py +0 -28
tomwer/gui/visualization/test/test_dataviewer.py +1 -28
tomwer/gui/visualization/test/test_diffviewer.py +1 -28
tomwer/gui/visualization/test/test_nx_tomo_metadata_viewer.py +0 -5
tomwer/gui/visualization/test/test_reconstruction_parameters.py +1 -27
tomwer/gui/visualization/test/test_sinogramviewer.py +1 -28
tomwer/gui/visualization/test/test_stacks.py +184 -115
tomwer/gui/visualization/test/test_volumeviewer.py +3 -2
tomwer/gui/visualization/tomoobjoverview.py +2 -2
tomwer/gui/visualization/volumeoverview.py +3 -2
tomwer/gui/visualization/volumeviewer.py +47 -43
tomwer/io/__init__.py +2 -0
tomwer/io/utils/h5pyutils.py +1 -27
tomwer/io/utils/test/test_raw_and_processed_data.py +10 -0
tomwer/io/utils/test/test_utils.py +67 -0
tomwer/io/utils/utils.py +2 -31
tomwer/resources/__init__.py +13 -33
tomwer/resources/gui/icons/edit_downstream.svg +114 -0
tomwer/resources/gui/icons/edit_upstream.svg +112 -0
tomwer/resources/gui/icons/free_edition.svg +23 -0
tomwer/resources/gui/icons/icat_gallery_opts.png +0 -0
tomwer/resources/gui/icons/icat_gallery_opts.svg +80 -0
tomwer/resources/gui/icons/search.png +0 -0
tomwer/resources/gui/icons/search.svg +23 -0
tomwer/resources/gui/icons/warning.png +0 -0
tomwer/synctools/__init__.py +2 -0
tomwer/synctools/axis.py +1 -27
tomwer/synctools/darkref.py +1 -26
tomwer/synctools/datalistener.py +1 -27
tomwer/synctools/datatransfert.py +2 -27
tomwer/synctools/imageloaderthread.py +1 -28
tomwer/synctools/rsyncmanager.py +1 -25
tomwer/synctools/saaxis.py +1 -26
tomwer/synctools/sadeltabeta.py +1 -26
tomwer/synctools/stacks/control/datalistener.py +1 -26
tomwer/synctools/stacks/processingstack.py +4 -33
tomwer/synctools/stacks/reconstruction/axis.py +6 -53
tomwer/synctools/stacks/reconstruction/castvolume.py +12 -43
tomwer/synctools/stacks/reconstruction/dkrefcopy.py +4 -27
tomwer/synctools/stacks/reconstruction/nabu.py +3 -28
tomwer/synctools/stacks/reconstruction/normalization.py +2 -27
tomwer/synctools/stacks/reconstruction/saaxis.py +2 -27
tomwer/synctools/stacks/reconstruction/sadeltabeta.py +2 -27
tomwer/synctools/tests/__init__.py +0 -0
tomwer/synctools/{test → tests}/test_darkRefs.py +16 -40
tomwer/synctools/{test → tests}/test_foldertransfer.py +2 -33
tomwer/synctools/utils/scanstages.py +2 -31
tomwer/tests/__init__.py +1 -0
tomwer/tests/app/test_stitching.py +95 -0
tomwer/tests/datasets.py +1 -5
tomwer/tests/orangecontrib/tomwer/widgets/cluster/tests/test_future_supervisorow.py +48 -0
tomwer/tests/orangecontrib/tomwer/widgets/cluster/tests/test_slurm_clusterow.py +40 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_advancement.py +8 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_data_validator.py +55 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datadiscovery.py +129 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datalistener.py +111 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_dataselector.py +69 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datawatcher.py +411 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_emailow.py +29 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_notifier.py +24 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_nxtomo_concatenate_ow.py +64 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_nxtomomill.py +133 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_reduce_dark_flat_selector.py +40 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_singletomoobj.py +40 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_timerow.py +25 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_tomoobj_series.py +96 -0
tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_volume_selector.py +69 -0
orangecontrib/tomwer/widgets/edit/test/test_image_key_editor.py → tomwer/tests/orangecontrib/tomwer/widgets/debugtools/tests/test_dataset_generator.py +17 -16
tomwer/tests/orangecontrib/tomwer/widgets/debugtools/tests/test_object_inspector.py +36 -0
{orangecontrib/tomwer/widgets/edit/test → tomwer/tests/orangecontrib/tomwer/widgets/edit/tests}/test_dark_flat_patch.py +1 -27
tomwer/tests/orangecontrib/tomwer/widgets/edit/tests/test_image_key_editor.py +30 -0
tomwer/tests/orangecontrib/tomwer/widgets/edit/tests/test_nxtomo_editor.py +138 -0
tomwer/tests/orangecontrib/tomwer/widgets/other/tests/test_pythonscript.py +31 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_axis.py +199 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_cast_volumeow.py +58 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_dark_refs_widget.py +136 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_delta_beta_selector.py +15 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_i_norm.py +200 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_helical_prepare_weights_double.py +20 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_volume.py +74 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_widget.py +107 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_sa_delta_beta.py +194 -0
tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_saaxis.py +194 -0
tomwer/tests/orangecontrib/tomwer/widgets/stitching/tests/test_zstitching.py +313 -0
tomwer/tests/orangecontrib/tomwer/widgets/tests/test_conditions.py +85 -0
tomwer/tests/orangecontrib/tomwer/widgets/tests/test_darkref.py +225 -0
tomwer/tests/orangecontrib/tomwer/widgets/tests/test_foldertransfert.py +105 -0
tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_dataviewerow.py +57 -0
tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_diffviewerow.py +39 -0
tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_nxtomo_metadata_viewer.py +29 -0
tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_radio_stackow.py +31 -0
tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_sample_movedow.py +46 -0
tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_sinogram_viewerow.py +31 -0
tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_slice_stackow.py +31 -0
tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_volume_viewerow.py +32 -0
tomwer/tests/test_ewoks/test_conversion.py +104 -0
tomwer/tests/test_ewoks/test_single_node_execution.py +87 -0
tomwer/tests/test_ewoks/test_workflows.py +138 -0
tomwer/utils.py +11 -39
tomwer/version.py +2 -2
{tomwer-1.3.26.dist-info → tomwer-1.4.0.dist-info}/LICENSE +3 -3
tomwer-1.4.0.dist-info/METADATA +337 -0
tomwer-1.4.0.dist-info/RECORD +912 -0
{tomwer-1.3.26.dist-info → tomwer-1.4.0.dist-info}/WHEEL +1 -1
{tomwer-1.3.26.dist-info → tomwer-1.4.0.dist-info}/entry_points.txt +1 -0
orangecontrib/tomwer/widgets/control/DataListOW.py +0 -129
orangecontrib/tomwer/widgets/control/TomoObjSerieOW.py +0 -86
orangecontrib/tomwer/widgets/control/VolumeSymLinkOW.py +0 -182
orangecontrib/tomwer/widgets/edit/test/test_nxtomo_editor.py +0 -141
orangecontrib/tomwer/widgets/icat/PublishProcessedDataOW.py +0 -115
orangecontrib/tomwer/widgets/icat/RawDataScreenshotCreatorOW.py +0 -98
orangecontrib/tomwer/widgets/icat/SaveToGalleryAndPublishOW.py +0 -129
orangecontrib/tomwer/widgets/icat/icons/add_gallery.png +0 -0
orangecontrib/tomwer/widgets/icat/icons/add_gallery.svg +0 -82
orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.png +0 -0
orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.svg +0 -143
orangecontrib/tomwer/widgets/visualization/LivesliceOW.py +0 -87
orangecontrib/tomwer/widgets/visualization/icons/liveslice.png +0 -0
orangecontrib/tomwer/widgets/visualization/icons/liveslice.svg +0 -110
tomwer/core/log/logger.py +0 -130
tomwer/core/process/control/test/test_volume_link.py +0 -74
tomwer/core/process/control/tomoobjserie.py +0 -12
tomwer/core/process/control/volumesymlink.py +0 -200
tomwer/core/process/icat/createscreenshots.py +0 -100
tomwer/core/process/icat/gallery.py +0 -377
tomwer/core/process/icat/icatbase.py +0 -36
tomwer/core/process/icat/publish.py +0 -228
tomwer/core/process/icat/screenshots.py +0 -27
tomwer/core/process/reconstruction/test/test_darkref.py +0 -60
tomwer/core/process/reconstruction/test/test_sadeltabeta.py +0 -74
tomwer/core/process/test/test_axis.py +0 -309
tomwer/core/process/visualization/liveslice.py +0 -6
tomwer/core/progress.py +0 -100
tomwer/core/scan/test/test_edf.py +0 -53
tomwer/core/scan/test/test_future_scan.py +0 -61
tomwer/core/scan/test/test_h5.py +0 -96
tomwer/core/scan/test/test_process_registration.py +0 -109
tomwer/core/test/test_scanutils.py +0 -53
tomwer/gui/control/emailnotifier.py +0 -174
tomwer/gui/control/serie/seriewaiter.py +0 -28
tomwer/gui/control/test/__init__.py +0 -28
tomwer/gui/control/test/test_datalist.py +0 -96
tomwer/gui/control/test/test_datavalidator.py +0 -54
tomwer/gui/control/test/test_email.py +0 -35
tomwer/gui/control/test/test_process_manager.py +0 -65
tomwer/gui/control/test/test_scanselector.py +0 -67
tomwer/gui/edit/test/__init__.py +0 -28
tomwer/gui/icat/gallery.py +0 -214
tomwer/gui/icat/publish.py +0 -187
tomwer/gui/reconstruction/axis/axis.py +0 -733
tomwer/gui/reconstruction/axis/radioaxis.py +0 -2467
tomwer/gui/stitching/stitching.py +0 -1392
tomwer/gui/test/__init__.py +0 -28
tomwer/gui/test/test_axis_gui.py +0 -34
tomwer/synctools/stacks/edit/darkflatpatch.py +0 -169
tomwer/synctools/stacks/edit/imagekeyeditor.py +0 -135
tomwer/third_part/WaitingOverlay.py +0 -110
tomwer-1.3.26-py3.11-nspkg.pth +0 -1
tomwer-1.3.26.dist-info/METADATA +0 -292
tomwer-1.3.26.dist-info/RECORD +0 -785
tomwer-1.3.26.dist-info/namespace_packages.txt +0 -1
/orangecontrib/tomwer/{widgets/edit/test → tests}/__init__.py +0 -0
{tomwer/core/process/control/test → orangecontrib/tomwer/tutorials/id16b}/__init__.py +0 -0
{tomwer/core/process/icat → orangecontrib/tomwer/widgets/cluster/tests}/__init__.py +0 -0
/orangecontrib/tomwer/widgets/control/icons/{tomoobjserie.png → tomoobjseries.png} +0 -0
{tomwer/core/process/reconstruction/test → orangecontrib/tomwer/widgets/control/tests}/__init__.py +0 -0
/orangecontrib/tomwer/widgets/{icat → dataportal}/icons/publish_processed_data.png +0 -0
/orangecontrib/tomwer/widgets/{icat → dataportal}/icons/publish_processed_data.svg +0 -0
{tomwer/core/process/test → orangecontrib/tomwer/widgets/debugtools/tests}/__init__.py +0 -0
{tomwer/core/scan/test → orangecontrib/tomwer/widgets/edit/tests}/__init__.py +0 -0
{tomwer/core/test → orangecontrib/tomwer/widgets/other/tests}/__init__.py +0 -0
{tomwer/gui/cluster/test → orangecontrib/tomwer/widgets/reconstruction/tests}/__init__.py +0 -0
{tomwer/gui/control/serie → orangecontrib/tomwer/widgets/stitching/tests}/__init__.py +0 -0
{tomwer/gui/icat → orangecontrib/tomwer/widgets/tests}/__init__.py +0 -0
{tomwer/gui/reconstruction/test → orangecontrib/tomwer/widgets/visualization/tests}/__init__.py +0 -0
/tomwer/{synctools/stacks/edit → app/stitching}/__init__.py +0 -0
/tomwer/{synctools/test → core/process/control/tests}/__init__.py +0 -0
/tomwer/core/process/control/{test → tests}/test_email.py +0 -0
/tomwer/core/process/control/{test → tests}/test_h52nx_process.py +0 -0
/tomwer/{third_part → core/process/drac}/__init__.py +0 -0
/tomwer/core/process/reconstruction/{test → tests}/test_axis_params.py +0 -0
/tomwer/core/process/reconstruction/{test → tests}/test_darkref_copy.py +0 -0
/tomwer/core/process/reconstruction/{test → tests}/test_paramsbase.py +0 -0
/tomwer/core/scan/{test → tests}/test_scan.py +0 -0
/tomwer/gui/control/{serie → series}/nxtomoconcatenate.py +0 -0
/tomwer/gui/control/{test → tests}/test_datadiscovery.py +0 -0
/tomwer/gui/control/{test → tests}/test_reducedarkflat_selector.py +0 -0
/tomwer/gui/control/{test → tests}/test_single_tomo_obj.py +0 -0
{orangecontrib/tomwer/widgets/edit/test → tomwer/tests/orangecontrib/tomwer/widgets/edit/tests}/test_image_key_upgrader.py +0 -0
{tomwer-1.3.26.dist-info → tomwer-1.4.0.dist-info}/top_level.txt +0 -0

orangecontrib/tomwer/tutorials/id16b/ID16b_insitu.ows ADDED Viewed

@@ -0,0 +1,302 @@
+<?xml version='1.0' encoding='utf-8'?>
+<scheme version="2.0" title="insitu" description="">
+	<nodes>
+		<node id="0" name="notifier" qualified_name="orangecontrib.tomwer.widgets.control.NotifierOW.NotifierWidgetOW" project_name="tomwer" version="" title="notifier" position="(1123.0, 407.00000000000006)" />
+		<node id="1" name="nabu slice reconstruction" qualified_name="orangecontrib.tomwer.widgets.reconstruction.NabuOW.NabuOW" project_name="tomwer" version="" title="nabu slice reconstruction" position="(751.0, 409.00000000000006)" />
+		<node id="2" name="data viewer" qualified_name="orangecontrib.tomwer.widgets.visualization.DataViewerOW.DataViewerOW" project_name="tomwer" version="" title="data viewer" position="(1248.0, 540.0)" />
+		<node id="3" name="center of rotation finder" qualified_name="orangecontrib.tomwer.widgets.reconstruction.AxisOW.AxisOW" project_name="tomwer" version="" title="default center of rotation" position="(639.0, 417.00000000000006)" />
+		<node id="4" name="Python Script" qualified_name="orangecontrib.tomwer.widgets.other.PythonScriptOW.OWPythonScript" project_name="tomwer" version="" title="create volfloat symlink" position="(1223.0, 680.0)" />
+		<node id="5" name="Python Script" qualified_name="orangecontrib.tomwer.widgets.other.PythonScriptOW.OWPythonScript" project_name="tomwer" version="" title="Python Script (old)" position="(358.6666666666667, 240.5)" />
+		<node id="6" name="Python Script" qualified_name="orangecontrib.tomwer.widgets.other.PythonScriptOW.OWPythonScript" project_name="tomwer" version="" title="normalize" position="(879.0, 466.00000000000006)" />
+		<node id="7" name="data transfer" qualified_name="orangecontrib.tomwer.widgets.control.DataTransfertOW.DataTransfertOW" project_name="tomwer" version="" title="data transfer" position="(1013.0, 585.0)" />
+		<node id="8" name="data viewer" qualified_name="orangecontrib.tomwer.widgets.visualization.DataViewerOW.DataViewerOW" project_name="tomwer" version="" title="data viewer (1)" position="(1007.0, 307.0)" />
+		<node id="9" name="Python Script" qualified_name="orangecontrib.tomwer.widgets.other.PythonScriptOW.OWPythonScript" project_name="tomwer" version="" title="Python Script (new)" position="(367.0, 360.00000000000006)" />
+		<node id="10" name="scan selector" qualified_name="orangecontrib.tomwer.widgets.control.DataSelectorOW.DataSelectorOW" project_name="tomwer" version="" title="scan selector" position="(197.16666666666666, 151.83333333333334)" />
+		<node id="11" name="scan watcher" qualified_name="orangecontrib.tomwer.widgets.control.DataWatcherOW.DataWatcherOW" project_name="tomwer" version="" title="scan watcher" position="(185.0, 299.0)" />
+		<node id="12" name="reduced darks and flats" qualified_name="orangecontrib.tomwer.widgets.reconstruction.DarkRefAndCopyOW.DarkRefAndCopyOW" project_name="tomwer" version="" title="dark and flat field construction" position="(505.0, 409.00000000000006)" />
+	</nodes>
+	<links>
+		<link id="0" source_node_id="1" sink_node_id="6" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="1" source_node_id="7" sink_node_id="0" source_channel="data" sink_channel="tomo_obj" enabled="true" source_channel_id="data" sink_channel_id="tomo_obj" />
+		<link id="2" source_node_id="7" sink_node_id="2" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="3" source_node_id="7" sink_node_id="4" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="4" source_node_id="6" sink_node_id="8" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="5" source_node_id="9" sink_node_id="12" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="6" source_node_id="12" sink_node_id="3" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="7" source_node_id="3" sink_node_id="1" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="8" source_node_id="6" sink_node_id="7" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="9" source_node_id="11" sink_node_id="9" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+	</links>
+	<annotations />
+	<thumbnail />
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+		<properties node_id="10" format="literal">{'_scanIDs': [], 'controlAreaVisible': True, 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\x02\xac\x00\x00\x03:\x00\x00\x06\x17\x00\x00\x04\xe8\x00\x00\x02\xac\x00\x00\x03_\x00\x00\x06\x17\x00\x00\x04\xe8\x00\x00\x00\x00\x00\x00\x00\x00\n\x00\x00\x00\x02\xac\x00\x00\x03_\x00\x00\x06\x17\x00\x00\x04\xe8', '__version__': 1}</properties>
+		<properties node_id="11" format="literal">{'acquisitionMethod': ('[scan].xml',), 'controlAreaVisible': True, 'folderObserved': '/lbsram/data', 'linuxFilePatternSetting': None, 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\x0c\xf3\x00\x00\x00|\x00\x00\x13\x7f\x00\x00\x02n\x00\x00\x0c\xf3\x00\x00\x00\xa1\x00\x00\x13\x7f\x00\x00\x02n\x00\x00\x00\x01\x00\x00\x00\x00\n\x00\x00\x00\x0c\xf3\x00\x00\x00\xa1\x00\x00\x13\x7f\x00\x00\x02n', '__version__': 1}</properties>
+		<properties node_id="12" format="literal">{'_ewoks_default_inputs': {'data': None, 'dark_ref_params': {'DOWHEN': 'before', 'DARKCAL': 'mean', 'DARKOVE': 0, 'DARKRMV': 0, 'DKFILE': 'darkend[0-9]{3,4}', 'REFSCAL': 'median', 'REFSOVE': 0, 'REFSRMV': 0, 'RFFILE': 'ref*.*[0-9]{3,4}_[0-9]{3,4}'}}, 'controlAreaVisible': True, 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\x01+\x00\x00\x01\x99\x00\x00\x08\xd4\x00\x00\x04\x06\x00\x00\x01+\x00\x00\x01\x99\x00\x00\x08\xd4\x00\x00\x04\x06\x00\x00\x00\x00\x00\x00\x00\x00\n\x00\x00\x00\x01+\x00\x00\x01\x99\x00\x00\x08\xd4\x00\x00\x04\x06', '__version__': 1}</properties>
+	</node_properties>
+	<session_state>
+		<window_groups />
+	</session_state>
+</scheme>

orangecontrib/tomwer/tutorials/id16b/ID16b_normalization.ows ADDED Viewed

@@ -0,0 +1,218 @@
+<?xml version='1.0' encoding='utf-8'?>
+<scheme version="2.0" title="normalization" description="">
+	<nodes>
+		<node id="0" name="scan watcher" qualified_name="orangecontrib.tomwer.widgets.control.DataWatcherOW.DataWatcherOW" project_name="tomwer" version="" title="scan watcher" position="(45.0, 212.0)" />
+		<node id="1" name="reduced darks and flats" qualified_name="orangecontrib.tomwer.widgets.reconstruction.DarkRefAndCopyOW.DarkRefAndCopyOW" project_name="tomwer" version="" title="dark and flat field construction" position="(338.0, 228.0)" />
+		<node id="2" name="scan selector" qualified_name="orangecontrib.tomwer.widgets.control.DataSelectorOW.DataSelectorOW" project_name="tomwer" version="" title="scan selector" position="(84.0, 57.0)" />
+		<node id="3" name="notifier" qualified_name="orangecontrib.tomwer.widgets.control.NotifierOW.NotifierWidgetOW" project_name="tomwer" version="" title="notifier" position="(953.0, 342.0)" />
+		<node id="4" name="nabu slice reconstruction" qualified_name="orangecontrib.tomwer.widgets.reconstruction.NabuOW.NabuOW" project_name="tomwer" version="" title="nabu slice reconstruction" position="(581.0, 344.0)" />
+		<node id="5" name="data viewer" qualified_name="orangecontrib.tomwer.widgets.visualization.DataViewerOW.DataViewerOW" project_name="tomwer" version="" title="data viewer" position="(1078.0, 475.0)" />
+		<node id="6" name="center of rotation finder" qualified_name="orangecontrib.tomwer.widgets.reconstruction.AxisOW.AxisOW" project_name="tomwer" version="" title="default center of rotation" position="(460.0, 307.0)" />
+		<node id="7" name="Python Script" qualified_name="orangecontrib.tomwer.widgets.other.PythonScriptOW.OWPythonScript" project_name="tomwer" version="" title="create volfloat symlink" position="(1053.0, 615.0)" />
+		<node id="8" name="Python Script" qualified_name="orangecontrib.tomwer.widgets.other.PythonScriptOW.OWPythonScript" project_name="tomwer" version="" title="Python Script" position="(221.0, 157.0)" />
+		<node id="9" name="Python Script" qualified_name="orangecontrib.tomwer.widgets.other.PythonScriptOW.OWPythonScript" project_name="tomwer" version="" title="normalize" position="(709.0, 401.0)" />
+		<node id="10" name="data transfer" qualified_name="orangecontrib.tomwer.widgets.control.DataTransfertOW.DataTransfertOW" project_name="tomwer" version="" title="data transfer" position="(844.0, 520.0)" />
+		<node id="11" name="slice stack" qualified_name="orangecontrib.tomwer.widgets.visualization.SliceStackOW.SlicesStackOW" project_name="tomwer" version="" title="slice stack" position="(792.0, 691.0)" />
+	</nodes>
+	<links>
+		<link id="0" source_node_id="1" sink_node_id="6" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="1" source_node_id="8" sink_node_id="1" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="2" source_node_id="4" sink_node_id="9" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="3" source_node_id="6" sink_node_id="4" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="4" source_node_id="9" sink_node_id="10" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="5" source_node_id="10" sink_node_id="3" source_channel="data" sink_channel="tomo_obj" enabled="true" source_channel_id="data" sink_channel_id="tomo_obj" />
+		<link id="6" source_node_id="10" sink_node_id="5" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="7" source_node_id="10" sink_node_id="7" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="8" source_node_id="9" sink_node_id="11" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="9" source_node_id="0" sink_node_id="8" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+	</links>
+	<annotations />
+	<thumbnail />
+	<node_properties>
+		<properties node_id="0" format="literal">{'acquisitionMethod': ('[scan].xml',), 'controlAreaVisible': True, 'folderObserved': '/lbsram/data/', 'linuxFilePatternSetting': '', 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\x02I\x00\x00\x01h\x00\x00\x056\x00\x00\x03G\x00\x00\x02I\x00\x00\x01h\x00\x00\x056\x00\x00\x03G\x00\x00\x00\x00\x00\x00\x00\x00\x07\x80\x00\x00\x02I\x00\x00\x01h\x00\x00\x056\x00\x00\x03G', '__version__': 1}</properties>
+		<properties node_id="1" format="literal">{'_ewoks_default_inputs': {'data': None, 'dark_ref_params': {'DOWHEN': 'before', 'DARKCAL': 'Average', 'DARKOVE': 1, 'DARKRMV': 0, 'DKFILE': 'darkend[0-9]{3,4}', 'REFSCAL': 'Median', 'REFSOVE': 1, 'REFSRMV': 0, 'RFFILE': 'ref*.*[0-9]{3,4}_[0-9]{3,4}'}}, 'controlAreaVisible': True, 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\x00H\x00\x00\x00\x1b\x00\x00\x03\xef\x00\x00\x02\x1f\x00\x00\x00H\x00\x00\x00@\x00\x00\x03\xef\x00\x00\x02\x1f\x00\x00\x00\x00\x00\x00\x00\x00\n\x00\x00\x00\x00H\x00\x00\x00@\x00\x00\x03\xef\x00\x00\x02\x1f', '__version__': 1}</properties>
+		<properties node_id="2" format="literal">{'_scanIDs': [], 'controlAreaVisible': True, 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\x02\x80\x00\x00\x01C\x00\x00\x04\xff\x00\x00\x03G\x00\x00\x02\x80\x00\x00\x01h\x00\x00\x04\xff\x00\x00\x03G\x00\x00\x00\x00\x00\x00\x00\x00\x07\x80\x00\x00\x02\x80\x00\x00\x01h\x00\x00\x04\xff\x00\x00\x03G', '__version__': 1}</properties>
+		<properties node_id="3" format="literal">{'_muted': False, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="4" format="literal">{'_ewoks_default_inputs': {'data': None, 'nabu_params': {'preproc': {'flatfield': 1, 'double_flatfield_enabled': 0, 'dff_sigma': 0.0, 'ccd_filter_enabled': 0, 'ccd_filter_threshold': 0.04, 'take_logarithm': True, 'log_min_clip': 1e-06, 'log_max_clip': 10.0, 'sino_rings_correction': 'None', 'sino_rings_options': 'sigma=1.0 ; levels=10', 'tilt_correction': '', 'autotilt_options': ''}, 'reconstruction': {'method': 'FBP', 'angles_file': '', 'axis_correction_file': '', 'angle_offset': 0.0, 'fbp_filter_type': 'ramlak', 'padding_type': 'edges', 'iterations': 200, 'optim_algorithm': 'chambolle-pock', 'weight_tv': 0.01, 'preconditioning_filter': 1, 'positivity_constraint': 1, 'rotation_axis_position': '', 'translation_movements_file': '', 'clip_outer_circle': 1, 'start_x': 0, 'end_x': -1, 'start_y': 0, 'end_y': -1, 'start_z': 0, 'end_z': -1, 'enable_halftomo': 0}, 'dataset': {'binning': 1, 'binning_z': 1, 'projections_subsampling': 1}, 'tomwer_slices': 'middle', 'output': {'file_format': 'vol', 'location': ''}, 'phase': {'method': 'Paganin', 'delta_beta': '500', 'padding_type': 'edge', 'unsharp_coeff': 3.0, 'unsharp_sigma': 0.65}, 'configuration_level': 'optional', 'mode_locked': False, 'cluster_config': None}}, 'controlAreaVisible': True, 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\x00H\x00\x00\x00@\x00\x00\x05\xd1\x00\x00\x03\x9e\x00\x00\x00H\x00\x00\x00@\x00\x00\x05\xd1\x00\x00\x03\x9e\x00\x00\x00\x00\x00\x00\x00\x00\n\x00\x00\x00\x00H\x00\x00\x00@\x00\x00\x05\xd1\x00\x00\x03\x9e', '__version__': 1}</properties>
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+		<properties node_id="6" format="literal">{'_ewoks_default_inputs': {'data': None, 'axis_params': {'MODE': 'centered', 'POSITION_VALUE': -11.37684057962989, 'CALC_INPUT_TYPE': 'transmission_nopag', 'ANGLE_MODE': '0-180', 'USE_SINOGRAM': False, 'SINOGRAM_LINE': '', 'SINOGRAM_SUBSAMPLING': 10, 'AXIS_URL_1': '', 'AXIS_URL_2': '', 'LOOK_AT_STDMAX': False, 'NEAR_WX': 10, 'FINE_STEP_X': 0.1, 'SCALE_IMG2_TO_IMG1': False, 'NEAR_POSITION': 0.0, 'PADDING_MODE': 'edge', 'FLIP_LR': True, 'COMPOSITE_OPTS': {'theta': 10, 'oversampling': 4, 'n_subsampling_y': 10, 'take_log': True, 'near_pos': 0.0, 'near_width': 20}, 'SIDE': 'left', 'COR_OPTIONS': ''}, 'gui': {'mode_is_lock': True, 'value_is_lock': False, 'auto_update_estimated_cor': True}}, 'controlAreaVisible': True, 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\x00H\x00\x00\x00\x1b\x00\x00\x05]\x00\x00\x03\x17\x00\x00\x00H\x00\x00\x00@\x00\x00\x05]\x00\x00\x03\x17\x00\x00\x00\x00\x00\x00\x00\x00\n\x00\x00\x00\x00H\x00\x00\x00@\x00\x00\x05]\x00\x00\x03\x17', '__version__': 1}</properties>
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+		<properties node_id="10" format="literal">{'controlAreaVisible': True, 'dest_dir_settings': None, 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\x04&gt;\x00\x00\x02h\x00\x00\x05\xad\x00\x00\x02\xe8\x00\x00\x04&gt;\x00\x00\x02h\x00\x00\x05\xad\x00\x00\x02\xe8\x00\x00\x00\x00\x00\x00\x00\x00\n\x00\x00\x00\x04&gt;\x00\x00\x02h\x00\x00\x05\xad\x00\x00\x02\xe8', '__version__': 1}</properties>
+		<properties node_id="11" format="literal">{'controlAreaVisible': True, 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\x01\xaa\x00\x00\x00\x8b\x00\x00\x08\xbc\x00\x00\x04\x90\x00\x00\x01\xaa\x00\x00\x00\xb0\x00\x00\x08\xbc\x00\x00\x04\x90\x00\x00\x00\x00\x00\x00\x00\x00\n\x00\x00\x00\x01\xaa\x00\x00\x00\xb0\x00\x00\x08\xbc\x00\x00\x04\x90', '__version__': 1}</properties>
+	</node_properties>
+	<session_state>
+		<window_groups />
+	</session_state>
+</scheme>

tomwer 1.3.26__py3-none-any.whl → 1.4.0__py3-none-any.whl

tomwer 1.3.26py3-none-any.whl → 1.4.0py3-none-any.whl