tomwer 1.3.26__py3-none-any.whl → 1.4.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- orangecontrib/tomwer/orange/managedprocess.py +1 -29
- orangecontrib/tomwer/orange/settings.py +2 -28
- orangecontrib/tomwer/tests/TestAcquisition.py +220 -0
- orangecontrib/tomwer/tutorials/append_raw_darks_and_flats_frames_to_NXtomos.ows +2 -2
- orangecontrib/tomwer/tutorials/copy_reduced_darks_and_flats_meth1.ows +1 -1
- orangecontrib/tomwer/tutorials/{icat_publication.ows → drac_publication.ows} +7 -21
- orangecontrib/tomwer/tutorials/id16b/ID16b_full_volume.ows +22 -0
- orangecontrib/tomwer/tutorials/id16b/ID16b_insitu.ows +302 -0
- orangecontrib/tomwer/tutorials/id16b/ID16b_normalization.ows +218 -0
- orangecontrib/tomwer/tutorials/simple_volume_to_slurm_reconstruction.ows +29 -24
- orangecontrib/tomwer/tutorials/test_cor.ows +19 -0
- orangecontrib/tomwer/tutorials/volume_casting_on_slurm.ows +54 -0
- orangecontrib/tomwer/widgets/__init__.py +3 -5
- orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py +35 -54
- orangecontrib/tomwer/widgets/cluster/SlurmClusterOW.py +1 -31
- orangecontrib/tomwer/widgets/control/AdvancementOW.py +1 -29
- orangecontrib/tomwer/widgets/control/DataDiscoveryOW.py +5 -4
- orangecontrib/tomwer/widgets/control/DataListenerOW.py +1 -29
- orangecontrib/tomwer/widgets/control/DataSelectorOW.py +11 -30
- orangecontrib/tomwer/widgets/control/DataTransfertOW.py +2 -28
- orangecontrib/tomwer/widgets/control/DataValidatorOW.py +1 -28
- orangecontrib/tomwer/widgets/control/DataWatcherOW.py +1 -28
- orangecontrib/tomwer/widgets/control/EDF2NXTomomillOW.py +48 -51
- orangecontrib/tomwer/widgets/control/EmailOW.py +12 -2
- orangecontrib/tomwer/widgets/control/FilterOW.py +1 -28
- orangecontrib/tomwer/widgets/control/NXTomomillOW.py +37 -53
- orangecontrib/tomwer/widgets/control/NXtomoConcatenate.py +21 -20
- orangecontrib/tomwer/widgets/control/NotifierOW.py +9 -28
- orangecontrib/tomwer/widgets/control/ReduceDarkFlatSelectorOW.py +3 -2
- orangecontrib/tomwer/widgets/control/SingleTomoObjOW.py +1 -27
- orangecontrib/tomwer/widgets/control/TimerOW.py +9 -28
- orangecontrib/tomwer/widgets/control/TomoObjSeriesOW.py +58 -0
- orangecontrib/tomwer/widgets/control/VolumeSelector.py +8 -30
- orangecontrib/tomwer/widgets/control/icons/nxtomomill.svg +173 -119
- orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.png +0 -0
- orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.svg +55 -195
- orangecontrib/tomwer/widgets/control/icons/{tomoobjserie.svg → tomoobjseries.svg} +2 -2
- orangecontrib/tomwer/widgets/dataportal/PublishProcessedDataOW.py +172 -0
- orangecontrib/tomwer/widgets/{icat → dataportal}/__init__.py +2 -2
- orangecontrib/tomwer/widgets/debugtools/DatasetGeneratorOW.py +2 -29
- orangecontrib/tomwer/widgets/debugtools/ObjectInspectorOW.py +1 -29
- orangecontrib/tomwer/widgets/edit/DarkFlatPatchOW.py +48 -73
- orangecontrib/tomwer/widgets/edit/ImageKeyEditorOW.py +48 -75
- orangecontrib/tomwer/widgets/edit/ImageKeyUpgraderOW.py +5 -30
- orangecontrib/tomwer/widgets/edit/NXtomoEditorOW.py +51 -52
- orangecontrib/tomwer/widgets/other/PythonScriptOW.py +22 -10
- orangecontrib/tomwer/widgets/reconstruction/AxisOW.py +51 -60
- orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py +22 -68
- orangecontrib/tomwer/widgets/reconstruction/DarkRefAndCopyOW.py +3 -30
- orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py +21 -19
- orangecontrib/tomwer/widgets/reconstruction/NabuOW.py +7 -70
- orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py +41 -84
- orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py +15 -40
- orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py +13 -35
- orangecontrib/tomwer/widgets/reconstruction/SinoNormOW.py +2 -30
- orangecontrib/tomwer/widgets/stitching/ZStitchingConfigOW.py +11 -11
- orangecontrib/tomwer/widgets/utils.py +2 -29
- orangecontrib/tomwer/widgets/visualization/DataViewerOW.py +1 -27
- orangecontrib/tomwer/widgets/visualization/DiffViewerOW.py +1 -27
- orangecontrib/tomwer/widgets/visualization/NXtomoMetadataViewerOW.py +1 -1
- orangecontrib/tomwer/widgets/visualization/RadioStackOW.py +2 -28
- orangecontrib/tomwer/widgets/visualization/SampleMovedOW.py +1 -27
- orangecontrib/tomwer/widgets/visualization/SinogramViewerOW.py +1 -27
- orangecontrib/tomwer/widgets/visualization/SliceStackOW.py +2 -28
- tomwer/__init__.py +3 -28
- tomwer/__main__.py +8 -4
- tomwer/app/__init__.py +2 -0
- tomwer/app/axis.py +8 -10
- tomwer/app/canvas.py +23 -29
- tomwer/app/canvas_launcher/config.py +14 -102
- tomwer/app/canvas_launcher/environ.py +5 -8
- tomwer/app/canvas_launcher/mainwindow.py +175 -69
- tomwer/app/canvas_launcher/splash.py +1 -3
- tomwer/app/canvas_launcher/utils.py +47 -0
- tomwer/app/canvas_launcher/widgetsscheme.py +3 -10
- tomwer/app/diffframe.py +2 -0
- tomwer/app/imagekeyeditor.py +2 -1
- tomwer/app/imagekeyupgrader.py +2 -0
- tomwer/app/multicor.py +5 -2
- tomwer/app/multipag.py +16 -5
- tomwer/app/nabuapp.py +2 -1
- tomwer/app/nxtomoeditor.py +17 -12
- tomwer/app/patchrawdarkflat.py +2 -0
- tomwer/app/radiostack.py +3 -2
- tomwer/app/reducedarkflat.py +3 -0
- tomwer/app/samplemoved.py +2 -0
- tomwer/app/scanviewer.py +2 -0
- tomwer/app/sinogramviewer.py +2 -0
- tomwer/app/slicestack.py +11 -13
- tomwer/app/stitching/common.py +431 -0
- tomwer/app/stopdatalistener.py +3 -0
- tomwer/app/ystitching.py +26 -0
- tomwer/app/zstitching.py +8 -363
- tomwer/core/__init__.py +2 -28
- tomwer/core/cluster/__init__.py +3 -0
- tomwer/core/cluster/cluster.py +10 -26
- tomwer/core/futureobject.py +17 -43
- tomwer/core/log/__init__.py +2 -0
- tomwer/core/log/processlog.py +0 -28
- tomwer/core/process/cluster/supervisor.py +52 -34
- tomwer/core/process/conditions/filters.py +3 -28
- tomwer/core/process/control/datalistener/datalistener.py +7 -75
- tomwer/core/process/control/datalistener/rpcserver.py +8 -38
- tomwer/core/process/control/datawatcher/datawatcher.py +11 -40
- tomwer/core/process/control/datawatcher/datawatcherobserver.py +30 -64
- tomwer/core/process/control/datawatcher/datawatcherprocess.py +11 -32
- tomwer/core/process/control/datawatcher/edfdwprocess.py +2 -27
- tomwer/core/process/control/datawatcher/hdf5dwprocess.py +1 -26
- tomwer/core/process/control/datawatcher/status.py +1 -26
- tomwer/core/process/control/emailnotifier.py +11 -23
- tomwer/core/process/control/nxtomoconcatenate.py +20 -18
- tomwer/core/process/control/nxtomomill.py +9 -44
- tomwer/core/process/control/scanlist.py +0 -27
- tomwer/core/process/control/scantransfer.py +15 -13
- tomwer/core/process/control/scanvalidator.py +4 -30
- tomwer/core/process/control/{test → tests}/test_concatenate_nxtomos.py +5 -5
- tomwer/core/process/control/timer.py +1 -27
- tomwer/core/process/control/tomoobjseries.py +12 -0
- tomwer/core/process/drac/binning.py +37 -0
- tomwer/core/process/drac/dracbase.py +170 -0
- tomwer/core/process/drac/gallery.py +109 -0
- tomwer/core/process/drac/output.py +12 -0
- tomwer/core/process/drac/processeddataset.py +147 -0
- tomwer/core/process/drac/publish.py +118 -0
- tomwer/core/process/drac/rawdataset.py +142 -0
- tomwer/core/process/drac/tests/test_gallery.py +71 -0
- tomwer/core/process/drac/tests/test_icat_processed_dataset.py +80 -0
- tomwer/core/process/drac/tests/test_icat_raw_dataset.py +90 -0
- tomwer/core/process/edit/darkflatpatch.py +1 -28
- tomwer/core/process/edit/imagekeyeditor.py +4 -32
- tomwer/core/process/edit/nxtomoeditor.py +307 -0
- tomwer/core/process/edit/tests/test_darkflatpatch.py +243 -0
- tomwer/core/process/edit/tests/test_imagekey_editor.py +99 -0
- tomwer/core/process/output.py +9 -2
- tomwer/core/process/reconstruction/__init__.py +0 -26
- tomwer/core/process/reconstruction/axis/anglemode.py +1 -29
- tomwer/core/process/reconstruction/axis/axis.py +47 -804
- tomwer/core/process/reconstruction/axis/mode.py +89 -25
- tomwer/core/process/reconstruction/axis/params.py +131 -283
- tomwer/core/process/reconstruction/axis/projectiontype.py +0 -28
- tomwer/core/process/reconstruction/axis/side.py +8 -0
- tomwer/core/process/reconstruction/darkref/darkrefs.py +14 -39
- tomwer/core/process/reconstruction/darkref/darkrefscopy.py +7 -39
- tomwer/core/process/reconstruction/darkref/params.py +1 -28
- tomwer/core/process/reconstruction/nabu/castvolume.py +19 -34
- tomwer/core/process/reconstruction/nabu/nabucommon.py +18 -43
- tomwer/core/process/reconstruction/nabu/nabuscores.py +64 -68
- tomwer/core/process/reconstruction/nabu/nabuslices.py +63 -105
- tomwer/core/process/reconstruction/nabu/nabuvolume.py +44 -70
- tomwer/core/process/reconstruction/nabu/plane.py +10 -0
- tomwer/core/process/reconstruction/nabu/settings.py +1 -28
- tomwer/core/process/reconstruction/nabu/target.py +0 -28
- tomwer/core/process/reconstruction/nabu/test/test_castvolume.py +116 -0
- tomwer/core/process/reconstruction/nabu/test/test_nabu_utils.py +277 -0
- tomwer/core/process/reconstruction/nabu/test/test_nabunormalization.py +199 -0
- tomwer/core/process/reconstruction/nabu/utils.py +11 -60
- tomwer/core/process/reconstruction/normalization/normalization.py +2 -32
- tomwer/core/process/reconstruction/normalization/params.py +3 -35
- tomwer/core/process/reconstruction/output.py +14 -19
- tomwer/core/process/reconstruction/paramsbase.py +4 -33
- tomwer/core/process/reconstruction/saaxis/params.py +5 -33
- tomwer/core/process/reconstruction/saaxis/saaxis.py +22 -51
- tomwer/core/process/reconstruction/sadeltabeta/params.py +2 -31
- tomwer/core/process/reconstruction/sadeltabeta/sadeltabeta.py +18 -46
- tomwer/core/process/reconstruction/scores/params.py +9 -39
- tomwer/core/process/reconstruction/scores/scores.py +10 -42
- tomwer/core/process/reconstruction/tests/__init__.py +0 -0
- tomwer/core/process/reconstruction/tests/test_axis.py +46 -0
- tomwer/core/process/reconstruction/tests/test_darkref.py +33 -0
- tomwer/core/process/reconstruction/{test → tests}/test_saaxis.py +1 -27
- tomwer/core/process/reconstruction/tests/test_sadeltabeta.py +48 -0
- tomwer/core/process/reconstruction/{test → tests}/test_utils.py +4 -4
- tomwer/core/process/reconstruction/utils/cor.py +8 -4
- tomwer/core/process/script/python.py +1 -27
- tomwer/core/process/script/tests/test_script.py +41 -0
- tomwer/core/process/stitching/metadataholder.py +5 -4
- tomwer/core/process/stitching/nabustitcher.py +35 -5
- tomwer/core/process/stitching/tests/test_metadataholder.py +17 -0
- tomwer/core/process/task.py +20 -63
- tomwer/core/process/tests/__init__.py +0 -0
- tomwer/core/process/{test → tests}/test_conditions.py +1 -28
- tomwer/core/process/{test → tests}/test_dark_and_flat.py +1 -27
- tomwer/core/process/{test → tests}/test_data_listener.py +1 -27
- tomwer/core/process/{test → tests}/test_data_transfer.py +2 -28
- tomwer/core/process/{test → tests}/test_data_watcher.py +1 -27
- tomwer/core/process/{test → tests}/test_nabu.py +2 -33
- tomwer/core/process/{test → tests}/test_normalization.py +1 -26
- tomwer/core/process/{test → tests}/test_timer.py +1 -27
- tomwer/core/process/utils.py +2 -31
- tomwer/core/process/visualization/dataviewer.py +1 -26
- tomwer/core/process/visualization/diffviewer.py +1 -26
- tomwer/core/process/visualization/imagestackviewer.py +0 -26
- tomwer/core/process/visualization/radiostack.py +0 -26
- tomwer/core/process/visualization/samplemoved.py +0 -28
- tomwer/core/process/visualization/sinogramviewer.py +0 -27
- tomwer/core/process/visualization/slicestack.py +0 -28
- tomwer/core/process/visualization/tests/test_data_viewer.py +12 -0
- tomwer/core/process/visualization/tests/test_diff_viewer.py +12 -0
- tomwer/core/process/visualization/tests/test_image_stack_viewer.py +14 -0
- tomwer/core/process/visualization/tests/test_radio_stack.py +12 -0
- tomwer/core/process/visualization/tests/test_sample_moved.py +14 -0
- tomwer/core/process/visualization/tests/test_sinogram_viewer.py +13 -0
- tomwer/core/process/visualization/tests/test_slice_stack.py +13 -0
- tomwer/core/process/visualization/tests/test_volume_viewer.py +12 -0
- tomwer/core/process/visualization/volumeviewer.py +0 -29
- tomwer/core/scan/__init__.py +3 -27
- tomwer/core/scan/blissscan.py +5 -34
- tomwer/core/scan/edfscan.py +19 -53
- tomwer/core/scan/hdf5scan.py +2 -2
- tomwer/core/scan/nxtomoscan.py +48 -54
- tomwer/core/scan/scanbase.py +107 -203
- tomwer/core/scan/scanfactory.py +11 -41
- tomwer/core/scan/tests/__init__.py +0 -0
- tomwer/core/scan/tests/test_edf.py +25 -0
- tomwer/core/scan/tests/test_future_scan.py +35 -0
- tomwer/core/scan/tests/test_nxtomoscan.py +143 -0
- tomwer/core/scan/tests/test_process_registration.py +64 -0
- tomwer/core/settings.py +18 -40
- tomwer/core/tests/__init__.py +0 -0
- tomwer/core/tests/test_scanutils.py +26 -0
- tomwer/core/{test → tests}/test_utils.py +1 -28
- tomwer/core/tomwer_object.py +4 -0
- tomwer/core/utils/__init__.py +2 -0
- tomwer/core/utils/char.py +0 -28
- tomwer/core/utils/deprecation.py +12 -38
- tomwer/core/utils/dictutils.py +1 -3
- tomwer/core/utils/ftseriesutils.py +1 -27
- tomwer/core/utils/gpu.py +0 -28
- tomwer/core/utils/image.py +8 -39
- tomwer/core/utils/locker.py +1 -28
- tomwer/core/utils/logconfig.py +0 -27
- tomwer/core/utils/normalization.py +4 -31
- tomwer/core/utils/nxtomoutils.py +8 -38
- tomwer/core/utils/resource.py +0 -26
- tomwer/core/utils/scanutils.py +23 -52
- tomwer/core/utils/slurm.py +7 -30
- tomwer/core/utils/spec.py +6 -6
- tomwer/core/utils/tests/__init__.py +0 -0
- tomwer/core/utils/tests/test_image.py +30 -0
- tomwer/core/utils/tests/test_nxtomo.py +38 -0
- tomwer/core/utils/tests/test_scan_utils.py +46 -0
- tomwer/core/utils/tests/test_time.py +6 -0
- tomwer/core/utils/threads.py +0 -26
- tomwer/core/utils/time.py +0 -27
- tomwer/core/volume/__init__.py +4 -0
- tomwer/core/volume/edfvolume.py +1 -28
- tomwer/core/volume/hdf5volume.py +1 -28
- tomwer/core/volume/jp2kvolume.py +1 -27
- tomwer/core/volume/rawvolume.py +1 -28
- tomwer/core/volume/tests/test_volumes.py +21 -0
- tomwer/core/volume/tiffvolume.py +1 -28
- tomwer/core/volume/volumebase.py +5 -0
- tomwer/core/volume/volumefactory.py +7 -33
- tomwer/gui/__init__.py +0 -28
- tomwer/gui/cluster/__init__.py +2 -0
- tomwer/gui/cluster/slurm.py +297 -95
- tomwer/gui/cluster/supervisor.py +1 -27
- tomwer/gui/cluster/tests/__init__.py +0 -0
- tomwer/gui/cluster/{test → tests}/test_cluster.py +21 -26
- tomwer/gui/cluster/{test → tests}/test_supervisor.py +1 -27
- tomwer/gui/conditions/__init__.py +2 -0
- tomwer/gui/conditions/filter.py +1 -26
- tomwer/gui/configuration/__init__.py +2 -0
- tomwer/gui/control/__init__.py +2 -0
- tomwer/gui/control/actions.py +2 -28
- tomwer/gui/control/datadiscovery.py +4 -3
- tomwer/gui/control/datalist.py +64 -69
- tomwer/gui/control/datalistener.py +1 -39
- tomwer/gui/control/datareacheractions.py +1 -28
- tomwer/gui/control/datatransfert.py +2 -29
- tomwer/gui/control/datavalidator.py +3 -37
- tomwer/gui/control/datawatcher/__init__.py +0 -28
- tomwer/gui/control/datawatcher/configuration.py +1 -28
- tomwer/gui/control/datawatcher/datawatcher.py +3 -32
- tomwer/gui/control/datawatcher/datawatcherobserver.py +2 -28
- tomwer/gui/control/history.py +5 -35
- tomwer/gui/control/nxtomomill.py +3 -30
- tomwer/gui/control/observations.py +61 -55
- tomwer/gui/control/reducedarkflatselector.py +24 -20
- tomwer/gui/control/scanselectorwidget.py +2 -28
- tomwer/gui/control/selectorwidgetbase.py +17 -17
- tomwer/gui/control/series/__init__.py +0 -0
- tomwer/gui/control/{serie/seriecreator.py → series/seriescreator.py} +214 -235
- tomwer/gui/control/series/serieswaiter.py +0 -0
- tomwer/gui/control/series/test/test_creator.py +424 -0
- tomwer/gui/control/series/test/test_nxtomo_concatenate.py +21 -0
- tomwer/gui/control/singletomoobj.py +1 -1
- tomwer/gui/control/tests/__init__.py +0 -0
- tomwer/gui/control/tests/test_datalist.py +47 -0
- tomwer/gui/control/{test → tests}/test_datalistener.py +1 -28
- tomwer/gui/control/tests/test_datavalidator.py +27 -0
- tomwer/gui/control/{test → tests}/test_inputwidget.py +1 -27
- tomwer/gui/control/tests/test_process_manager.py +38 -0
- tomwer/gui/control/tests/test_scan_observations.py +23 -0
- tomwer/gui/control/tests/test_scanselector.py +42 -0
- tomwer/gui/control/{test → tests}/test_scanvalidator.py +1 -27
- tomwer/gui/control/{test → tests}/test_volume_dialog.py +2 -30
- tomwer/gui/control/{test → tests}/test_volumeselector.py +1 -27
- tomwer/gui/control/volumeselectorwidget.py +2 -30
- tomwer/gui/dataportal/__init__.py +2 -0
- tomwer/gui/{icat → dataportal}/createscreenshots.py +3 -2
- tomwer/gui/dataportal/gallery.py +133 -0
- tomwer/gui/dataportal/outputformat.py +0 -0
- tomwer/gui/dataportal/publish.py +96 -0
- tomwer/gui/dataportal/tests/test_create_screenshots_gui.py +23 -0
- tomwer/gui/dataportal/tests/test_gallery_gui.py +21 -0
- tomwer/gui/debugtools/__init__.py +2 -0
- tomwer/gui/debugtools/datasetgenerator.py +1 -30
- tomwer/gui/debugtools/objectinspector.py +1 -29
- tomwer/gui/dialog/QDataDialog.py +89 -0
- tomwer/gui/{qfolderdialog.py → dialog/QVolumeDialog.py} +8 -107
- tomwer/gui/dialog/__init__.py +1 -0
- tomwer/gui/edit/__init__.py +2 -0
- tomwer/gui/edit/dkrfpatch.py +52 -87
- tomwer/gui/edit/imagekeyeditor.py +18 -54
- tomwer/gui/edit/nxtomoeditor.py +113 -300
- tomwer/gui/edit/nxtomowarmer.py +3 -2
- tomwer/gui/edit/tests/__init__.py +0 -0
- tomwer/gui/edit/{test → tests}/test_dkrf_patch.py +3 -29
- tomwer/gui/edit/{test → tests}/test_image_key_editor.py +1 -27
- tomwer/gui/edit/{test → tests}/test_nx_editor.py +45 -23
- tomwer/gui/fonts.py +5 -0
- tomwer/gui/icons.py +28 -66
- tomwer/gui/illustrations.py +4 -34
- tomwer/gui/imagefromfile.py +5 -30
- tomwer/gui/metadataloader.py +36 -0
- tomwer/gui/qconfigfile.py +3 -0
- tomwer/gui/qlefilesystem.py +3 -0
- tomwer/gui/reconstruction/__init__.py +2 -0
- tomwer/gui/reconstruction/axis/AxisMainWindow.py +275 -0
- tomwer/gui/reconstruction/axis/AxisOptionsWidget.py +313 -0
- tomwer/gui/reconstruction/axis/AxisSettingsWidget.py +797 -0
- tomwer/gui/reconstruction/axis/AxisWidget.py +534 -0
- tomwer/gui/reconstruction/axis/CalculationWidget.py +218 -0
- tomwer/gui/reconstruction/axis/CompareImages.py +11 -44
- tomwer/gui/reconstruction/axis/ControlWidget.py +285 -0
- tomwer/gui/reconstruction/axis/EstimatedCORWidget.py +394 -0
- tomwer/gui/reconstruction/axis/EstimatedCorComboBox.py +118 -0
- tomwer/gui/reconstruction/axis/InputWidget.py +347 -0
- tomwer/gui/reconstruction/axis/ManualFramesSelection.py +168 -0
- tomwer/gui/reconstruction/axis/__init__.py +2 -2
- tomwer/gui/reconstruction/darkref/__init__.py +0 -27
- tomwer/gui/reconstruction/darkref/darkrefcopywidget.py +5 -34
- tomwer/gui/reconstruction/darkref/darkrefwidget.py +1 -27
- tomwer/gui/reconstruction/nabu/castvolume.py +40 -59
- tomwer/gui/reconstruction/nabu/check.py +7 -33
- tomwer/gui/reconstruction/nabu/nabuconfig/base.py +7 -34
- tomwer/gui/reconstruction/nabu/nabuconfig/ctf.py +6 -5
- tomwer/gui/reconstruction/nabu/nabuconfig/nabuconfig.py +10 -69
- tomwer/gui/reconstruction/nabu/nabuconfig/output.py +3 -47
- tomwer/gui/reconstruction/nabu/nabuconfig/phase.py +54 -36
- tomwer/gui/reconstruction/nabu/nabuconfig/preprocessing.py +103 -54
- tomwer/gui/reconstruction/nabu/nabuconfig/reconstruction.py +116 -65
- tomwer/gui/reconstruction/nabu/nabuflow.py +31 -61
- tomwer/gui/reconstruction/nabu/platform.py +94 -0
- tomwer/gui/reconstruction/nabu/slices.py +81 -45
- tomwer/gui/reconstruction/nabu/slurm.py +1 -27
- tomwer/gui/reconstruction/nabu/test/test_cast_volume.py +82 -0
- tomwer/gui/reconstruction/nabu/test/test_check.py +66 -0
- tomwer/gui/reconstruction/nabu/test/test_ctf.py +46 -0
- tomwer/gui/reconstruction/nabu/test/test_helical.py +21 -0
- tomwer/gui/reconstruction/nabu/test/test_nabu_preprocessing.py +81 -0
- tomwer/gui/reconstruction/nabu/volume.py +62 -90
- tomwer/gui/reconstruction/normalization/intensity.py +5 -32
- tomwer/gui/reconstruction/normalization/test/test_intensity.py +89 -0
- tomwer/gui/reconstruction/saaxis/corrangeselector.py +32 -56
- tomwer/gui/reconstruction/saaxis/dimensionwidget.py +56 -96
- tomwer/gui/reconstruction/saaxis/saaxis.py +17 -38
- tomwer/gui/reconstruction/saaxis/sliceselector.py +8 -39
- tomwer/gui/reconstruction/sadeltabeta/saadeltabeta.py +19 -37
- tomwer/gui/reconstruction/scores/control.py +2 -30
- tomwer/gui/reconstruction/scores/scoreplot.py +23 -49
- tomwer/gui/reconstruction/tests/__init__.py +0 -0
- tomwer/gui/reconstruction/{test → tests}/test_axis.py +23 -49
- tomwer/gui/reconstruction/{test → tests}/test_nabu.py +16 -31
- tomwer/gui/reconstruction/{test → tests}/test_saaxis.py +10 -37
- tomwer/gui/reconstruction/{test → tests}/test_sadeltabeta.py +1 -26
- tomwer/gui/samplemoved/__init__.py +2 -30
- tomwer/gui/samplemoved/selectiontable.py +3 -33
- tomwer/gui/settings.py +7 -0
- tomwer/gui/stackplot.py +33 -661
- tomwer/gui/stacks.py +261 -135
- tomwer/gui/stitching/SingleAxisStitchingWidget.py +326 -0
- tomwer/gui/stitching/StitchingOptionsWidget.py +438 -0
- tomwer/gui/stitching/StitchingWindow.py +586 -0
- tomwer/gui/stitching/__init__.py +2 -0
- tomwer/gui/stitching/alignment.py +90 -0
- tomwer/gui/stitching/axisorderedlist.py +44 -34
- tomwer/gui/stitching/config/axisparams.py +25 -11
- tomwer/gui/stitching/config/output.py +6 -5
- tomwer/gui/stitching/config/positionoveraxis.py +313 -51
- tomwer/gui/stitching/config/stitchingstrategies.py +22 -16
- tomwer/gui/stitching/config/tests/test_axisparams.py +25 -0
- tomwer/gui/stitching/config/tomoobjdetails.py +3 -5
- tomwer/gui/stitching/normalization.py +1 -0
- tomwer/gui/stitching/preview.py +59 -0
- tomwer/gui/stitching/singleaxis.py +57 -0
- tomwer/gui/stitching/stitchandbackground.py +3 -2
- tomwer/gui/stitching/stitching_preview.py +44 -36
- tomwer/gui/stitching/stitching_raw.py +5 -3
- tomwer/gui/stitching/tests/test_ZStitchingWindow.py +88 -0
- tomwer/gui/stitching/tests/test_axis_ordered_list.py +21 -0
- tomwer/gui/stitching/tests/test_normalization.py +27 -0
- tomwer/gui/stitching/tests/test_preview.py +68 -0
- tomwer/gui/stitching/tests/test_stitching_raw.py +110 -0
- tomwer/gui/stitching/tests/utils.py +92 -0
- tomwer/gui/stitching/utils.py +14 -0
- tomwer/gui/stitching/z_stitching/fineestimation.py +5 -33
- tomwer/gui/stitching/z_stitching/tests/test_fine_estimation.py +35 -0
- tomwer/gui/stitching/z_stitching/tests/test_raw_estimation.py +215 -0
- tomwer/gui/stitching/z_stitching/tests/test_stitching_window.py +51 -0
- tomwer/gui/tests/__init__.py +0 -0
- tomwer/gui/tests/test_axis_gui.py +43 -0
- tomwer/gui/{test → tests}/test_qfolder_dialog.py +1 -1
- tomwer/gui/utils/RangeWidget.py +44 -0
- tomwer/gui/utils/buttons.py +4 -3
- tomwer/gui/utils/completer.py +2 -33
- tomwer/gui/utils/flow.py +11 -40
- tomwer/gui/utils/gpu.py +60 -0
- tomwer/gui/utils/illustrations.py +1 -26
- tomwer/gui/utils/inputwidget.py +35 -73
- tomwer/gui/utils/lineselector/lineselector.py +9 -46
- tomwer/gui/utils/loadingmode.py +81 -0
- tomwer/gui/utils/qt_utils.py +9 -0
- tomwer/gui/utils/sandboxes.py +1 -26
- tomwer/gui/utils/scandescription.py +2 -31
- tomwer/gui/utils/scrollarea.py +6 -55
- tomwer/gui/utils/slider.py +4 -28
- tomwer/gui/utils/splashscreen.py +0 -28
- tomwer/gui/utils/step.py +14 -13
- tomwer/gui/utils/tests/test_completer.py +41 -0
- tomwer/gui/utils/tests/test_line_selector.py +21 -0
- tomwer/gui/utils/tests/test_splashscreen.py +8 -0
- tomwer/gui/utils/tests/test_vignettes.py +68 -0
- tomwer/gui/utils/unitsystem.py +15 -69
- tomwer/gui/utils/utils.py +4 -5
- tomwer/gui/utils/vignettes.py +10 -41
- tomwer/gui/utils/waiterthread.py +0 -26
- tomwer/gui/visualization/__init__.py +2 -0
- tomwer/gui/visualization/dataviewer.py +68 -421
- tomwer/gui/visualization/diffviewer/diffviewer.py +2 -30
- tomwer/gui/visualization/diffviewer/shiftwidget.py +4 -29
- tomwer/gui/visualization/fullscreenplot.py +5 -5
- tomwer/gui/visualization/imagestack.py +403 -0
- tomwer/gui/visualization/nxtomometadata.py +0 -4
- tomwer/gui/visualization/reconstructionparameters.py +14 -32
- tomwer/gui/visualization/scanoverview.py +33 -66
- tomwer/gui/visualization/sinogramviewer.py +2 -28
- tomwer/gui/visualization/test/__init__.py +0 -28
- tomwer/gui/visualization/test/test_dataviewer.py +1 -28
- tomwer/gui/visualization/test/test_diffviewer.py +1 -28
- tomwer/gui/visualization/test/test_nx_tomo_metadata_viewer.py +0 -5
- tomwer/gui/visualization/test/test_reconstruction_parameters.py +1 -27
- tomwer/gui/visualization/test/test_sinogramviewer.py +1 -28
- tomwer/gui/visualization/test/test_stacks.py +184 -115
- tomwer/gui/visualization/test/test_volumeviewer.py +3 -2
- tomwer/gui/visualization/tomoobjoverview.py +2 -2
- tomwer/gui/visualization/volumeoverview.py +3 -2
- tomwer/gui/visualization/volumeviewer.py +47 -43
- tomwer/io/__init__.py +2 -0
- tomwer/io/utils/h5pyutils.py +1 -27
- tomwer/io/utils/test/test_raw_and_processed_data.py +10 -0
- tomwer/io/utils/test/test_utils.py +67 -0
- tomwer/io/utils/utils.py +2 -31
- tomwer/resources/__init__.py +13 -33
- tomwer/resources/gui/icons/edit_downstream.svg +114 -0
- tomwer/resources/gui/icons/edit_upstream.svg +112 -0
- tomwer/resources/gui/icons/free_edition.svg +23 -0
- tomwer/resources/gui/icons/icat_gallery_opts.png +0 -0
- tomwer/resources/gui/icons/icat_gallery_opts.svg +80 -0
- tomwer/resources/gui/icons/search.png +0 -0
- tomwer/resources/gui/icons/search.svg +23 -0
- tomwer/resources/gui/icons/warning.png +0 -0
- tomwer/synctools/__init__.py +2 -0
- tomwer/synctools/axis.py +1 -27
- tomwer/synctools/darkref.py +1 -26
- tomwer/synctools/datalistener.py +1 -27
- tomwer/synctools/datatransfert.py +2 -27
- tomwer/synctools/imageloaderthread.py +1 -28
- tomwer/synctools/rsyncmanager.py +1 -25
- tomwer/synctools/saaxis.py +1 -26
- tomwer/synctools/sadeltabeta.py +1 -26
- tomwer/synctools/stacks/control/datalistener.py +1 -26
- tomwer/synctools/stacks/processingstack.py +4 -33
- tomwer/synctools/stacks/reconstruction/axis.py +6 -53
- tomwer/synctools/stacks/reconstruction/castvolume.py +12 -43
- tomwer/synctools/stacks/reconstruction/dkrefcopy.py +4 -27
- tomwer/synctools/stacks/reconstruction/nabu.py +3 -28
- tomwer/synctools/stacks/reconstruction/normalization.py +2 -27
- tomwer/synctools/stacks/reconstruction/saaxis.py +2 -27
- tomwer/synctools/stacks/reconstruction/sadeltabeta.py +2 -27
- tomwer/synctools/tests/__init__.py +0 -0
- tomwer/synctools/{test → tests}/test_darkRefs.py +16 -40
- tomwer/synctools/{test → tests}/test_foldertransfer.py +2 -33
- tomwer/synctools/utils/scanstages.py +2 -31
- tomwer/tests/__init__.py +1 -0
- tomwer/tests/app/test_stitching.py +95 -0
- tomwer/tests/datasets.py +1 -5
- tomwer/tests/orangecontrib/tomwer/widgets/cluster/tests/test_future_supervisorow.py +48 -0
- tomwer/tests/orangecontrib/tomwer/widgets/cluster/tests/test_slurm_clusterow.py +40 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_advancement.py +8 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_data_validator.py +55 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datadiscovery.py +129 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datalistener.py +111 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_dataselector.py +69 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_datawatcher.py +411 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_emailow.py +29 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_notifier.py +24 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_nxtomo_concatenate_ow.py +64 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_nxtomomill.py +133 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_reduce_dark_flat_selector.py +40 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_singletomoobj.py +40 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_timerow.py +25 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_tomoobj_series.py +96 -0
- tomwer/tests/orangecontrib/tomwer/widgets/control/tests/test_volume_selector.py +69 -0
- orangecontrib/tomwer/widgets/edit/test/test_image_key_editor.py → tomwer/tests/orangecontrib/tomwer/widgets/debugtools/tests/test_dataset_generator.py +17 -16
- tomwer/tests/orangecontrib/tomwer/widgets/debugtools/tests/test_object_inspector.py +36 -0
- {orangecontrib/tomwer/widgets/edit/test → tomwer/tests/orangecontrib/tomwer/widgets/edit/tests}/test_dark_flat_patch.py +1 -27
- tomwer/tests/orangecontrib/tomwer/widgets/edit/tests/test_image_key_editor.py +30 -0
- tomwer/tests/orangecontrib/tomwer/widgets/edit/tests/test_nxtomo_editor.py +138 -0
- tomwer/tests/orangecontrib/tomwer/widgets/other/tests/test_pythonscript.py +31 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_axis.py +199 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_cast_volumeow.py +58 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_dark_refs_widget.py +136 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_delta_beta_selector.py +15 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_i_norm.py +200 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_helical_prepare_weights_double.py +20 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_volume.py +74 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_nabu_widget.py +107 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_sa_delta_beta.py +194 -0
- tomwer/tests/orangecontrib/tomwer/widgets/reconstruction/tests/test_saaxis.py +194 -0
- tomwer/tests/orangecontrib/tomwer/widgets/stitching/tests/test_zstitching.py +313 -0
- tomwer/tests/orangecontrib/tomwer/widgets/tests/test_conditions.py +85 -0
- tomwer/tests/orangecontrib/tomwer/widgets/tests/test_darkref.py +225 -0
- tomwer/tests/orangecontrib/tomwer/widgets/tests/test_foldertransfert.py +105 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_dataviewerow.py +57 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_diffviewerow.py +39 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_nxtomo_metadata_viewer.py +29 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_radio_stackow.py +31 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_sample_movedow.py +46 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_sinogram_viewerow.py +31 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_slice_stackow.py +31 -0
- tomwer/tests/orangecontrib/tomwer/widgets/visualization/tests/test_volume_viewerow.py +32 -0
- tomwer/tests/test_ewoks/test_conversion.py +104 -0
- tomwer/tests/test_ewoks/test_single_node_execution.py +87 -0
- tomwer/tests/test_ewoks/test_workflows.py +138 -0
- tomwer/utils.py +11 -39
- tomwer/version.py +2 -2
- {tomwer-1.3.26.dist-info → tomwer-1.4.0.dist-info}/LICENSE +3 -3
- tomwer-1.4.0.dist-info/METADATA +337 -0
- tomwer-1.4.0.dist-info/RECORD +912 -0
- {tomwer-1.3.26.dist-info → tomwer-1.4.0.dist-info}/WHEEL +1 -1
- {tomwer-1.3.26.dist-info → tomwer-1.4.0.dist-info}/entry_points.txt +1 -0
- orangecontrib/tomwer/widgets/control/DataListOW.py +0 -129
- orangecontrib/tomwer/widgets/control/TomoObjSerieOW.py +0 -86
- orangecontrib/tomwer/widgets/control/VolumeSymLinkOW.py +0 -182
- orangecontrib/tomwer/widgets/edit/test/test_nxtomo_editor.py +0 -141
- orangecontrib/tomwer/widgets/icat/PublishProcessedDataOW.py +0 -115
- orangecontrib/tomwer/widgets/icat/RawDataScreenshotCreatorOW.py +0 -98
- orangecontrib/tomwer/widgets/icat/SaveToGalleryAndPublishOW.py +0 -129
- orangecontrib/tomwer/widgets/icat/icons/add_gallery.png +0 -0
- orangecontrib/tomwer/widgets/icat/icons/add_gallery.svg +0 -82
- orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.png +0 -0
- orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.svg +0 -143
- orangecontrib/tomwer/widgets/visualization/LivesliceOW.py +0 -87
- orangecontrib/tomwer/widgets/visualization/icons/liveslice.png +0 -0
- orangecontrib/tomwer/widgets/visualization/icons/liveslice.svg +0 -110
- tomwer/core/log/logger.py +0 -130
- tomwer/core/process/control/test/test_volume_link.py +0 -74
- tomwer/core/process/control/tomoobjserie.py +0 -12
- tomwer/core/process/control/volumesymlink.py +0 -200
- tomwer/core/process/icat/createscreenshots.py +0 -100
- tomwer/core/process/icat/gallery.py +0 -377
- tomwer/core/process/icat/icatbase.py +0 -36
- tomwer/core/process/icat/publish.py +0 -228
- tomwer/core/process/icat/screenshots.py +0 -27
- tomwer/core/process/reconstruction/test/test_darkref.py +0 -60
- tomwer/core/process/reconstruction/test/test_sadeltabeta.py +0 -74
- tomwer/core/process/test/test_axis.py +0 -309
- tomwer/core/process/visualization/liveslice.py +0 -6
- tomwer/core/progress.py +0 -100
- tomwer/core/scan/test/test_edf.py +0 -53
- tomwer/core/scan/test/test_future_scan.py +0 -61
- tomwer/core/scan/test/test_h5.py +0 -96
- tomwer/core/scan/test/test_process_registration.py +0 -109
- tomwer/core/test/test_scanutils.py +0 -53
- tomwer/gui/control/emailnotifier.py +0 -174
- tomwer/gui/control/serie/seriewaiter.py +0 -28
- tomwer/gui/control/test/__init__.py +0 -28
- tomwer/gui/control/test/test_datalist.py +0 -96
- tomwer/gui/control/test/test_datavalidator.py +0 -54
- tomwer/gui/control/test/test_email.py +0 -35
- tomwer/gui/control/test/test_process_manager.py +0 -65
- tomwer/gui/control/test/test_scanselector.py +0 -67
- tomwer/gui/edit/test/__init__.py +0 -28
- tomwer/gui/icat/gallery.py +0 -214
- tomwer/gui/icat/publish.py +0 -187
- tomwer/gui/reconstruction/axis/axis.py +0 -733
- tomwer/gui/reconstruction/axis/radioaxis.py +0 -2467
- tomwer/gui/stitching/stitching.py +0 -1392
- tomwer/gui/test/__init__.py +0 -28
- tomwer/gui/test/test_axis_gui.py +0 -34
- tomwer/synctools/stacks/edit/darkflatpatch.py +0 -169
- tomwer/synctools/stacks/edit/imagekeyeditor.py +0 -135
- tomwer/third_part/WaitingOverlay.py +0 -110
- tomwer-1.3.26-py3.11-nspkg.pth +0 -1
- tomwer-1.3.26.dist-info/METADATA +0 -292
- tomwer-1.3.26.dist-info/RECORD +0 -785
- tomwer-1.3.26.dist-info/namespace_packages.txt +0 -1
- /orangecontrib/tomwer/{widgets/edit/test → tests}/__init__.py +0 -0
- {tomwer/core/process/control/test → orangecontrib/tomwer/tutorials/id16b}/__init__.py +0 -0
- {tomwer/core/process/icat → orangecontrib/tomwer/widgets/cluster/tests}/__init__.py +0 -0
- /orangecontrib/tomwer/widgets/control/icons/{tomoobjserie.png → tomoobjseries.png} +0 -0
- {tomwer/core/process/reconstruction/test → orangecontrib/tomwer/widgets/control/tests}/__init__.py +0 -0
- /orangecontrib/tomwer/widgets/{icat → dataportal}/icons/publish_processed_data.png +0 -0
- /orangecontrib/tomwer/widgets/{icat → dataportal}/icons/publish_processed_data.svg +0 -0
- {tomwer/core/process/test → orangecontrib/tomwer/widgets/debugtools/tests}/__init__.py +0 -0
- {tomwer/core/scan/test → orangecontrib/tomwer/widgets/edit/tests}/__init__.py +0 -0
- {tomwer/core/test → orangecontrib/tomwer/widgets/other/tests}/__init__.py +0 -0
- {tomwer/gui/cluster/test → orangecontrib/tomwer/widgets/reconstruction/tests}/__init__.py +0 -0
- {tomwer/gui/control/serie → orangecontrib/tomwer/widgets/stitching/tests}/__init__.py +0 -0
- {tomwer/gui/icat → orangecontrib/tomwer/widgets/tests}/__init__.py +0 -0
- {tomwer/gui/reconstruction/test → orangecontrib/tomwer/widgets/visualization/tests}/__init__.py +0 -0
- /tomwer/{synctools/stacks/edit → app/stitching}/__init__.py +0 -0
- /tomwer/{synctools/test → core/process/control/tests}/__init__.py +0 -0
- /tomwer/core/process/control/{test → tests}/test_email.py +0 -0
- /tomwer/core/process/control/{test → tests}/test_h52nx_process.py +0 -0
- /tomwer/{third_part → core/process/drac}/__init__.py +0 -0
- /tomwer/core/process/reconstruction/{test → tests}/test_axis_params.py +0 -0
- /tomwer/core/process/reconstruction/{test → tests}/test_darkref_copy.py +0 -0
- /tomwer/core/process/reconstruction/{test → tests}/test_paramsbase.py +0 -0
- /tomwer/core/scan/{test → tests}/test_scan.py +0 -0
- /tomwer/gui/control/{serie → series}/nxtomoconcatenate.py +0 -0
- /tomwer/gui/control/{test → tests}/test_datadiscovery.py +0 -0
- /tomwer/gui/control/{test → tests}/test_reducedarkflat_selector.py +0 -0
- /tomwer/gui/control/{test → tests}/test_single_tomo_obj.py +0 -0
- {orangecontrib/tomwer/widgets/edit/test → tomwer/tests/orangecontrib/tomwer/widgets/edit/tests}/test_image_key_upgrader.py +0 -0
- {tomwer-1.3.26.dist-info → tomwer-1.4.0.dist-info}/top_level.txt +0 -0
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+
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66
|
+
self.setLayout(qt.QVBoxLayout())
|
67
|
+
|
68
|
+
self._manualSelectionWidget = ManualAxisSelectionWidget(
|
69
|
+
parent=self, shift_mode=ShiftMode.x_only
|
70
|
+
)
|
71
|
+
self._manualSelectionWidget.layout().setContentsMargins(0, 0, 0, 0)
|
72
|
+
|
73
|
+
self._displacementSelector = self._manualSelectionWidget._displacementSelector
|
74
|
+
self._shiftControl = self._manualSelectionWidget._shiftControl
|
75
|
+
self._roiControl = self._manualSelectionWidget._roiControl
|
76
|
+
self._imgOpts = self._manualSelectionWidget._imgOpts
|
77
|
+
|
78
|
+
self._mainWidget = AxisSettingsTabWidget(
|
79
|
+
parent=self,
|
80
|
+
recons_params=self._recons_params,
|
81
|
+
)
|
82
|
+
# append the Manual selection to the AxisTabWidget to have all widget related to axis settings together
|
83
|
+
self._mainWidget._calculationWidget.layout().addWidget(
|
84
|
+
self._manualSelectionWidget
|
85
|
+
)
|
86
|
+
|
87
|
+
self.layout().addWidget(self._mainWidget)
|
88
|
+
|
89
|
+
# signal / slot connection
|
90
|
+
self._shiftControl.sigShiftLeft.connect(self._incrementLeftShift)
|
91
|
+
self._shiftControl.sigShiftRight.connect(self._incrementRightShift)
|
92
|
+
self._shiftControl.sigShiftTop.connect(self._incrementTopShift)
|
93
|
+
self._shiftControl.sigShiftBottom.connect(self._incrementBottomShift)
|
94
|
+
self._shiftControl.sigReset.connect(self._resetShift)
|
95
|
+
self._shiftControl.sigShiftChanged.connect(self._setShiftAndSignal)
|
96
|
+
self._mainWidget.sigLockModeChanged.connect(self._modeLockChanged)
|
97
|
+
self._manualSelectionWidget.sigResetZoomRequested.connect(
|
98
|
+
self._requestZoomReset
|
99
|
+
)
|
100
|
+
self._imgOpts.sigSubSamplingChanged.connect(self.sigSubSamplingChanged)
|
101
|
+
self._mainWidget.sigUrlChanged.connect(self.sigUrlChanged)
|
102
|
+
self._roiControl.sigRoiChanged.connect(self.sigRoiChanged)
|
103
|
+
self._shiftControl.sigAuto.connect(self.sigAuto)
|
104
|
+
self._mainWidget.sigModeChanged.connect(self.sigModeChanged)
|
105
|
+
|
106
|
+
# set up interface
|
107
|
+
self.setAxisParams(self._recons_params)
|
108
|
+
|
109
|
+
def setScan(self, scan):
|
110
|
+
self._mainWidget.setScan(scan=scan)
|
111
|
+
self._roiControl.setScan(scan=scan)
|
112
|
+
|
113
|
+
def manual_uses_full_image(self, value):
|
114
|
+
self._roiControl.manual_uses_full_image(value)
|
115
|
+
|
116
|
+
def _incrementLeftShift(self):
|
117
|
+
self._incrementShift("left")
|
118
|
+
|
119
|
+
def _incrementRightShift(self):
|
120
|
+
self._incrementShift("right")
|
121
|
+
|
122
|
+
def _incrementTopShift(self):
|
123
|
+
self._incrementShift("top")
|
124
|
+
|
125
|
+
def _incrementBottomShift(self):
|
126
|
+
self._incrementShift("bottom")
|
127
|
+
|
128
|
+
def _setShiftAndSignal(self, x, y):
|
129
|
+
if x == self._xShift and y == self._yShift:
|
130
|
+
return
|
131
|
+
self.setShift(x, y)
|
132
|
+
self._shiftControl._updateShiftInfo(x=x, y=y)
|
133
|
+
self.sigShiftChanged.emit(x, y)
|
134
|
+
|
135
|
+
def setAxisParams(self, axis):
|
136
|
+
if axis == self._axisParams:
|
137
|
+
return
|
138
|
+
assert isinstance(axis, QAxisRP)
|
139
|
+
with block_signals(self):
|
140
|
+
if self._axisParams:
|
141
|
+
self._axisParams.sigChanged.disconnect(self._updateAxisView)
|
142
|
+
self._axisParams = axis
|
143
|
+
self.setXShift(self._axisParams.relative_cor_value)
|
144
|
+
self._mainWidget.setAxisParams(self._axisParams)
|
145
|
+
self._updateAxisView()
|
146
|
+
self._axisParams.sigChanged.connect(self._updateAxisView)
|
147
|
+
|
148
|
+
def _modeLockChanged(self, lock):
|
149
|
+
self.sigModeLockChanged.emit(lock)
|
150
|
+
|
151
|
+
def setMode(self, mode):
|
152
|
+
with block_signals(self._axisParams):
|
153
|
+
self._axisParams.mode = mode
|
154
|
+
self._mainWidget._calculationWidget.setMode(mode)
|
155
|
+
self._mainWidget._optionsWidget.setMode(mode)
|
156
|
+
self._updateAxisView()
|
157
|
+
self._axisParams.sigChanged.emit()
|
158
|
+
|
159
|
+
def _updateAxisView(self):
|
160
|
+
with block_signals(self._axisParams):
|
161
|
+
if self._axisParams.relative_cor_value not in (None, "..."):
|
162
|
+
self.setXShift(self._axisParams.relative_cor_value)
|
163
|
+
|
164
|
+
self._manualSelectionWidget.setVisible(
|
165
|
+
self._axisParams.mode is axis_mode.AxisMode.manual
|
166
|
+
)
|
167
|
+
|
168
|
+
def getAxisParams(self):
|
169
|
+
return self._axisParams
|
170
|
+
|
171
|
+
def _incrementShift(self, direction):
|
172
|
+
assert direction in ("left", "right", "top", "bottom")
|
173
|
+
if direction == "left":
|
174
|
+
self.setXShift(self._xShift - self.getShiftStep())
|
175
|
+
elif direction == "right":
|
176
|
+
self.setXShift(self._xShift + self.getShiftStep())
|
177
|
+
elif direction == "top":
|
178
|
+
self.setYShift(self._yShift + self.getShiftStep())
|
179
|
+
else:
|
180
|
+
self.setYShift(self._yShift - self.getShiftStep())
|
181
|
+
|
182
|
+
self._shiftControl._updateShiftInfo(x=self._xShift, y=self._yShift)
|
183
|
+
|
184
|
+
def _resetShift(self):
|
185
|
+
with block_signals(self._axisParams):
|
186
|
+
self.setXShift(0)
|
187
|
+
self.setYShift(0)
|
188
|
+
self._shiftControl._updateShiftInfo(x=self._xShift, y=self._yShift)
|
189
|
+
|
190
|
+
self.sigShiftChanged.emit(self._xShift, self._yShift)
|
191
|
+
|
192
|
+
def getXShift(self):
|
193
|
+
if self._xShift == "...":
|
194
|
+
return 0
|
195
|
+
return self._xShift
|
196
|
+
|
197
|
+
def getYShift(self):
|
198
|
+
if self._yShift == "...":
|
199
|
+
return 0
|
200
|
+
return self._yShift
|
201
|
+
|
202
|
+
def setXShift(self, x: float):
|
203
|
+
self.setShift(x=x, y=self._yShift)
|
204
|
+
|
205
|
+
def setYShift(self, y):
|
206
|
+
self.setShift(x=self._xShift, y=y)
|
207
|
+
|
208
|
+
def setShift(self, x, y):
|
209
|
+
if x == self._xShift and y == self._yShift:
|
210
|
+
return
|
211
|
+
self._xShift = x if x is not None else 0.0
|
212
|
+
self._yShift = y if y is not None else 0.0
|
213
|
+
if self._axisParams:
|
214
|
+
with block_signals(self._axisParams):
|
215
|
+
self._axisParams.set_relative_value(x)
|
216
|
+
self._shiftControl._updateShiftInfo(x=self._xShift, y=self._yShift)
|
217
|
+
if not isinstance(self._xShift, str):
|
218
|
+
# filter `...` and `?` values (used for issues or processing)
|
219
|
+
self.sigShiftChanged.emit(self._xShift, self._yShift)
|
220
|
+
|
221
|
+
def reset(self):
|
222
|
+
with block_signals(self):
|
223
|
+
self.setShift(0, 0)
|
224
|
+
self.sigShiftChanged.emit(self._xShift, self._yShift)
|
225
|
+
|
226
|
+
def setLocked(self, locked):
|
227
|
+
self._mainWidget.setEnabled(not locked)
|
228
|
+
|
229
|
+
def _requestZoomReset(self):
|
230
|
+
self.sigResetZoomRequested.emit()
|
231
|
+
|
232
|
+
# expose API
|
233
|
+
|
234
|
+
def setEstimatedCor(self, value):
|
235
|
+
self._mainWidget.setEstimatedCorValue(value=value)
|
236
|
+
|
237
|
+
def updateXRotationAxisPixelPositionOnNewScan(self) -> bool:
|
238
|
+
return self._mainWidget.updateXRotationAxisPixelPositionOnNewScan()
|
239
|
+
|
240
|
+
def setUpdateXRotationAxisPixelPositionOnNewScan(self, update: bool):
|
241
|
+
self._mainWidget.setUpdateXRotationAxisPixelPositionOnNewScan(update=update)
|
242
|
+
|
243
|
+
def getEstimatedCor(self):
|
244
|
+
return self._mainWidget.getEstimatedCor()
|
245
|
+
|
246
|
+
def getROIDims(self):
|
247
|
+
return self._roiControl.getROIDims()
|
248
|
+
|
249
|
+
def getShiftStep(self):
|
250
|
+
return self._displacementSelector.getStepSize()
|
251
|
+
|
252
|
+
def setShiftStep(self, value):
|
253
|
+
self._displacementSelector.setStepSize(value=value)
|
254
|
+
|
255
|
+
def getROIOrigin(self):
|
256
|
+
return self._roiControl.getROIOrigin()
|
257
|
+
|
258
|
+
def getImgSubSampling(self):
|
259
|
+
return self._imgOpts.getSubSampling()
|
260
|
+
|
261
|
+
def getMode(self):
|
262
|
+
return self._mainWidget.getMode()
|
263
|
+
|
264
|
+
def isModeLock(self):
|
265
|
+
return self._mainWidget.isModeLock()
|
266
|
+
|
267
|
+
def setModeLock(self, mode):
|
268
|
+
return self._mainWidget.setModeLock(mode=mode)
|
269
|
+
|
270
|
+
def isYAxisInverted(self) -> bool:
|
271
|
+
return self._mainWidget.isYAxisInverted()
|
272
|
+
|
273
|
+
def setYAxisInverted(self, checked: bool):
|
274
|
+
return self._mainWidget.setYAxisInverted(checked=checked)
|
275
|
+
|
276
|
+
|
277
|
+
class ManualAxisSelectionWidget(qt.QWidget):
|
278
|
+
sigResetZoomRequested = qt.Signal()
|
279
|
+
"""Signal emitted when a zoom request is necessary (when change to full
|
280
|
+
image)"""
|
281
|
+
|
282
|
+
def __init__(self, parent, shift_mode):
|
283
|
+
qt.QWidget.__init__(self, parent)
|
284
|
+
self.setLayout(qt.QVBoxLayout())
|
285
|
+
self._displacementSelector = StepSizeSelectorWidget(
|
286
|
+
parent=self,
|
287
|
+
fine_value=0.1,
|
288
|
+
medium_value=1.0,
|
289
|
+
rough_value=None,
|
290
|
+
dtype=float,
|
291
|
+
)
|
292
|
+
self.layout().addWidget(self._displacementSelector)
|
293
|
+
|
294
|
+
self._shiftControl = _ShiftControl(parent=self, shift_mode=shift_mode)
|
295
|
+
self.layout().addWidget(self._shiftControl)
|
296
|
+
|
297
|
+
self._roiControl = _ROIControl(parent=self)
|
298
|
+
self.layout().addWidget(self._roiControl)
|
299
|
+
|
300
|
+
self._imgOpts = _ImgOpts(parent=self)
|
301
|
+
self.layout().addWidget(self._imgOpts)
|
302
|
+
|
303
|
+
# connect signal / slot
|
304
|
+
self._roiControl.sigResetZoomRequested.connect(self.sigResetZoomRequested)
|
305
|
+
|
306
|
+
|
307
|
+
class _ROIControl(qt.QGroupBox):
|
308
|
+
"""
|
309
|
+
Widget used to define the ROI on images to compare
|
310
|
+
"""
|
311
|
+
|
312
|
+
sigRoiChanged = qt.Signal(object)
|
313
|
+
"""Signal emitted when the ROI changed"""
|
314
|
+
sigResetZoomRequested = qt.Signal()
|
315
|
+
"""Signal emitted when a zoom request is necessary (when change to full
|
316
|
+
image)"""
|
317
|
+
|
318
|
+
def __init__(self, parent):
|
319
|
+
qt.QGroupBox.__init__(self, "ROI selection", parent)
|
320
|
+
self.setLayout(qt.QVBoxLayout())
|
321
|
+
|
322
|
+
self._buttonGrp = qt.QButtonGroup(parent=self)
|
323
|
+
self._buttonGrp.setExclusive(True)
|
324
|
+
|
325
|
+
self._roiWidget = qt.QWidget(parent=self)
|
326
|
+
self._roiWidget.setLayout(qt.QHBoxLayout())
|
327
|
+
self._roiWidget.layout().setContentsMargins(0, 0, 0, 0)
|
328
|
+
self._fullImgButton = qt.QRadioButton("full image", parent=self)
|
329
|
+
self._buttonGrp.addButton(self._fullImgButton)
|
330
|
+
self.layout().addWidget(self._fullImgButton)
|
331
|
+
self._roiButton = qt.QRadioButton("ROI", parent=self._roiWidget)
|
332
|
+
self._roiWidget.layout().addWidget(self._roiButton)
|
333
|
+
self._buttonGrp.addButton(self._roiButton)
|
334
|
+
self._roiDefinition = _ROIDefinition(parent=self)
|
335
|
+
self._roiWidget.layout().addWidget(self._roiDefinition)
|
336
|
+
self.layout().addWidget(self._roiWidget)
|
337
|
+
|
338
|
+
# connect signal / Slot
|
339
|
+
self._roiButton.toggled.connect(self._roiDefinition.setEnabled)
|
340
|
+
self._fullImgButton.toggled.connect(self.sigResetZoomRequested)
|
341
|
+
self._roiButton.toggled.connect(self.sigResetZoomRequested)
|
342
|
+
self._roiDefinition.sigRoiChanged.connect(self.sigRoiChanged)
|
343
|
+
|
344
|
+
# setup for full image
|
345
|
+
self._fullImgButton.setChecked(True)
|
346
|
+
|
347
|
+
def getROIDims(self):
|
348
|
+
if self._roiButton.isChecked():
|
349
|
+
return self._roiDefinition.getROIDims()
|
350
|
+
else:
|
351
|
+
return None
|
352
|
+
|
353
|
+
def manual_uses_full_image(self, activate):
|
354
|
+
if activate:
|
355
|
+
self._fullImgButton.setChecked(True)
|
356
|
+
else:
|
357
|
+
self._roiButton.setChecked(True)
|
358
|
+
|
359
|
+
# expose API
|
360
|
+
def getROIOrigin(self):
|
361
|
+
return self._roiDefinition.getROIOrigin()
|
362
|
+
|
363
|
+
def setLimits(self, width, height):
|
364
|
+
self._roiDefinition.setLimits(width=width, height=height)
|
365
|
+
|
366
|
+
def setScan(self, scan):
|
367
|
+
self._roiDefinition.setScan(scan=scan)
|
368
|
+
|
369
|
+
|
370
|
+
class _ROIDefinition(qt.QWidget):
|
371
|
+
"""
|
372
|
+
Widget used to define ROI width and height.
|
373
|
+
|
374
|
+
:note: emit ROI == None if setDisabled
|
375
|
+
"""
|
376
|
+
|
377
|
+
sigRoiChanged = qt.Signal(object)
|
378
|
+
"""Signal emitted when the ROI changed"""
|
379
|
+
|
380
|
+
def __init__(self, parent):
|
381
|
+
qt.QWidget.__init__(self, parent)
|
382
|
+
self.setLayout(qt.QGridLayout())
|
383
|
+
self._already_set = False
|
384
|
+
|
385
|
+
# width & height
|
386
|
+
self.layout().addWidget(qt.QLabel("dims", self), 0, 0)
|
387
|
+
self._widthSB = qt.QSpinBox(parent=self)
|
388
|
+
self._widthSB.setSingleStep(2)
|
389
|
+
self._widthSB.setMaximum(10000)
|
390
|
+
self._widthSB.setSuffix(" px")
|
391
|
+
self._widthSB.setPrefix("w: ")
|
392
|
+
self._widthSB.setToolTip("ROI width")
|
393
|
+
self.layout().addWidget(self._widthSB, 0, 1)
|
394
|
+
self._heightSB = qt.QSpinBox(parent=self)
|
395
|
+
self._heightSB.setSingleStep(2)
|
396
|
+
self._heightSB.setSuffix(" px")
|
397
|
+
self._heightSB.setPrefix("h: ")
|
398
|
+
self._heightSB.setToolTip("ROI height")
|
399
|
+
self._heightSB.setMaximum(10000)
|
400
|
+
self.layout().addWidget(self._heightSB, 0, 2)
|
401
|
+
|
402
|
+
# origin x and y position
|
403
|
+
self.layout().addWidget(qt.QLabel("origin", self), 1, 0)
|
404
|
+
self._xOriginSB = qt.QSpinBox(parent=self)
|
405
|
+
self._xOriginSB.setSingleStep(10)
|
406
|
+
self._xOriginSB.setMaximum(10000)
|
407
|
+
self._xOriginSB.setPrefix("x: ")
|
408
|
+
self.layout().addWidget(self._xOriginSB, 1, 1)
|
409
|
+
self._yOriginSB = qt.QSpinBox(parent=self)
|
410
|
+
self._yOriginSB.setSingleStep(10)
|
411
|
+
self._yOriginSB.setPrefix("y: ")
|
412
|
+
self._yOriginSB.setMaximum(10000)
|
413
|
+
self.layout().addWidget(self._yOriginSB, 1, 2)
|
414
|
+
|
415
|
+
# Signal / Slot connection
|
416
|
+
self._widthSB.editingFinished.connect(self.__roiChanged)
|
417
|
+
self._heightSB.editingFinished.connect(self.__roiChanged)
|
418
|
+
self._xOriginSB.editingFinished.connect(self.__roiChanged)
|
419
|
+
self._yOriginSB.editingFinished.connect(self.__roiChanged)
|
420
|
+
|
421
|
+
def __roiChanged(self, *args, **kwargs):
|
422
|
+
self.sigRoiChanged.emit((self.getROIDims(), self.getROIOrigin()))
|
423
|
+
|
424
|
+
def setLimits(self, width, height):
|
425
|
+
"""
|
426
|
+
|
427
|
+
:param x: width maximum value
|
428
|
+
:param height: height maximum value
|
429
|
+
"""
|
430
|
+
for spinButton in (self._widthSB, self._heightSB):
|
431
|
+
spinButton.blockSignals(True)
|
432
|
+
assert type(width) is int
|
433
|
+
assert type(height) is int
|
434
|
+
valueChanged = False
|
435
|
+
if self._widthSB.value() > width:
|
436
|
+
self._widthSB.setValue(width)
|
437
|
+
valueChanged = True
|
438
|
+
if self._heightSB.value() > height:
|
439
|
+
self._heightSB.setValue(height)
|
440
|
+
valueChanged = True
|
441
|
+
|
442
|
+
# if this is the first limit definition, propose default width and
|
443
|
+
# height
|
444
|
+
if self._widthSB.value() == 0:
|
445
|
+
self._widthSB.setValue(min(256, width))
|
446
|
+
valueChanged = True
|
447
|
+
if self._heightSB.value() == 0:
|
448
|
+
self._heightSB.setValue(min(256, height))
|
449
|
+
valueChanged = True
|
450
|
+
|
451
|
+
# define minimum / maximum
|
452
|
+
self._widthSB.setRange(1, width)
|
453
|
+
self._heightSB.setRange(1, height)
|
454
|
+
for spinButton in (self._widthSB, self._heightSB):
|
455
|
+
spinButton.blockSignals(False)
|
456
|
+
if valueChanged is True:
|
457
|
+
self.__roiChanged()
|
458
|
+
|
459
|
+
def getROIDims(self) -> tuple | None:
|
460
|
+
"""
|
461
|
+
|
462
|
+
:return: (width, height) or None
|
463
|
+
"""
|
464
|
+
if self.isEnabled():
|
465
|
+
return (self._widthSB.value(), self._heightSB.value())
|
466
|
+
else:
|
467
|
+
return None
|
468
|
+
|
469
|
+
def getROIOrigin(self):
|
470
|
+
return (self._xOriginSB.value(), self._yOriginSB.value())
|
471
|
+
|
472
|
+
def setEnabled(self, *arg, **kwargs):
|
473
|
+
qt.QWidget.setEnabled(self, *arg, **kwargs)
|
474
|
+
self.__roiChanged()
|
475
|
+
|
476
|
+
def setScan(self, scan):
|
477
|
+
if not self._already_set:
|
478
|
+
self._already_set = True
|
479
|
+
try:
|
480
|
+
x_origin = scan.dim_1 // 2
|
481
|
+
y_origin = scan.dim_2 // 2
|
482
|
+
self._xOriginSB.setValue(x_origin)
|
483
|
+
self._yOriginSB.setValue(y_origin)
|
484
|
+
except Exception:
|
485
|
+
_logger.warning(f"unable to determine origin for {scan}")
|
486
|
+
|
487
|
+
|
488
|
+
class AxisSettingsTabWidget(qt.QTabWidget):
|
489
|
+
"""
|
490
|
+
TabWidget containing all the settings of the AxisTask
|
491
|
+
"""
|
492
|
+
|
493
|
+
sigLockModeChanged = qt.Signal(bool)
|
494
|
+
"""signal emitted when the mode lock change"""
|
495
|
+
|
496
|
+
sigUrlChanged = qt.Signal()
|
497
|
+
"""Signal emit when frames urls changed"""
|
498
|
+
|
499
|
+
sigModeChanged = qt.Signal(str)
|
500
|
+
"""Signal emit when mode (algorithm) is changed"""
|
501
|
+
|
502
|
+
sigUpdateXRotAxisPixelPosOnNewScan = qt.Signal()
|
503
|
+
|
504
|
+
def __init__(
|
505
|
+
self,
|
506
|
+
recons_params: QAxisRP | None,
|
507
|
+
parent=None,
|
508
|
+
):
|
509
|
+
"""
|
510
|
+
|
511
|
+
:param recons_params: reconstruction parameters edited by the widget
|
512
|
+
"""
|
513
|
+
qt.QTabWidget.__init__(self, parent)
|
514
|
+
assert recons_params is not None
|
515
|
+
# first tab 'calculation widget'
|
516
|
+
self._calculationWidget = CalculationWidget(
|
517
|
+
parent=self, axis_params=recons_params
|
518
|
+
)
|
519
|
+
|
520
|
+
# second tab: options
|
521
|
+
self._optionsWidget = AxisOptionsWidget(parent=self, axis_params=recons_params)
|
522
|
+
self._inputWidget = InputWidget(parent=self, axis_params=recons_params)
|
523
|
+
|
524
|
+
for widget in self._calculationWidget, self._optionsWidget:
|
525
|
+
spacer = qt.QWidget(self)
|
526
|
+
spacer.setSizePolicy(qt.QSizePolicy.Minimum, qt.QSizePolicy.Expanding)
|
527
|
+
widget.layout().addWidget(spacer)
|
528
|
+
|
529
|
+
self.addTab(self._calculationWidget, "calculation")
|
530
|
+
self.addTab(self._optionsWidget, "options")
|
531
|
+
# simplify set up. Hide options
|
532
|
+
self.addTab(self._inputWidget, "input")
|
533
|
+
|
534
|
+
# set up
|
535
|
+
self.setAxisParams(recons_params)
|
536
|
+
self._updatePossibleInput()
|
537
|
+
|
538
|
+
# connect signal / slot
|
539
|
+
self._calculationWidget.sigLockModeChanged.connect(self.sigLockModeChanged)
|
540
|
+
self.sigModeChanged.connect(self._updatePossibleInput)
|
541
|
+
self.sigModeChanged.connect(self._updatePossibleOptions)
|
542
|
+
self._inputWidget._sigUrlChanged.connect(self._urlChanged)
|
543
|
+
self._calculationWidget.sigModeChanged.connect(self.sigModeChanged)
|
544
|
+
self._calculationWidget.sigUpdateXRotAxisPixelPosOnNewScan.connect(
|
545
|
+
self.sigUpdateXRotAxisPixelPosOnNewScan
|
546
|
+
)
|
547
|
+
|
548
|
+
def _urlChanged(self):
|
549
|
+
self.sigUrlChanged.emit()
|
550
|
+
|
551
|
+
def setScan(self, scan):
|
552
|
+
if scan is not None:
|
553
|
+
self._calculationWidget.setScan(scan)
|
554
|
+
self._inputWidget.setScan(scan)
|
555
|
+
|
556
|
+
def setAxisParams(self, axis):
|
557
|
+
with block_signals(self):
|
558
|
+
self._calculationWidget.setAxisParams(axis)
|
559
|
+
self._optionsWidget.setAxisParams(axis)
|
560
|
+
self._inputWidget.setAxisParams(axis)
|
561
|
+
|
562
|
+
def _updatePossibleInput(self):
|
563
|
+
"""Update Input tab according to the current mode"""
|
564
|
+
current_mode = self.getMode()
|
565
|
+
valid_inputs = axis_mode.AXIS_MODE_METADATAS[current_mode].valid_inputs
|
566
|
+
if valid_inputs is None:
|
567
|
+
self._inputWidget.setEnabled(False)
|
568
|
+
else:
|
569
|
+
self._inputWidget.setEnabled(True)
|
570
|
+
self._inputWidget.setValidInputs(valid_inputs)
|
571
|
+
|
572
|
+
def _updatePossibleOptions(self):
|
573
|
+
mode = self.getMode()
|
574
|
+
self._optionsWidget.setMode(mode)
|
575
|
+
|
576
|
+
# expose API
|
577
|
+
def isModeLock(self) -> bool:
|
578
|
+
return self._calculationWidget.isModeLock()
|
579
|
+
|
580
|
+
def setModeLock(self, mode):
|
581
|
+
self._calculationWidget.setModeLock(mode=mode)
|
582
|
+
|
583
|
+
def setEstimatedCorValue(self, value):
|
584
|
+
self._calculationWidget.setEstimatedCorValue(value=value)
|
585
|
+
|
586
|
+
def getEstimatedCor(self):
|
587
|
+
return self._calculationWidget.getEstimatedCor()
|
588
|
+
|
589
|
+
def updateXRotationAxisPixelPositionOnNewScan(self) -> bool:
|
590
|
+
return self._calculationWidget.updateXRotationAxisPixelPositionOnNewScan()
|
591
|
+
|
592
|
+
def setUpdateXRotationAxisPixelPositionOnNewScan(self, update: bool):
|
593
|
+
self._calculationWidget.setUpdateXRotationAxisPixelPositionOnNewScan(
|
594
|
+
update=update
|
595
|
+
)
|
596
|
+
|
597
|
+
def getMode(self):
|
598
|
+
"""Return algorithm to use for axis calculation"""
|
599
|
+
return self._calculationWidget.getMode()
|
600
|
+
|
601
|
+
def isYAxisInverted(self) -> bool:
|
602
|
+
return self._calculationWidget._estimatedCorWidget.isYAxisInverted()
|
603
|
+
|
604
|
+
def setYAxisInverted(self, checked: bool):
|
605
|
+
return self._calculationWidget._estimatedCorWidget.setYAxisInverted(
|
606
|
+
checked=checked
|
607
|
+
)
|
608
|
+
|
609
|
+
|
610
|
+
class _ShiftControl(qt.QWidget):
|
611
|
+
"""
|
612
|
+
Widget to control the shift step we want to apply
|
613
|
+
"""
|
614
|
+
|
615
|
+
sigShiftLeft = qt.Signal()
|
616
|
+
"""Signal emitted when the left button is activated"""
|
617
|
+
sigShiftRight = qt.Signal()
|
618
|
+
"""Signal emitted when the right button is activated"""
|
619
|
+
sigShiftTop = qt.Signal()
|
620
|
+
"""Signal emitted when the top button is activated"""
|
621
|
+
sigShiftBottom = qt.Signal()
|
622
|
+
"""Signal emitted when the bottom button is activated"""
|
623
|
+
sigReset = qt.Signal()
|
624
|
+
"""Signal emitted when the reset button is activated"""
|
625
|
+
sigAuto = qt.Signal()
|
626
|
+
"""Signal emitted when the auto button is activated"""
|
627
|
+
sigShiftChanged = qt.Signal(float, float)
|
628
|
+
"""Signal emitted ony when xLE and yLE edition is finished"""
|
629
|
+
|
630
|
+
def __init__(self, parent, shift_mode: ShiftMode):
|
631
|
+
"""
|
632
|
+
|
633
|
+
:param parent: qt.QWidget
|
634
|
+
:param shift_mode: what are the shift we want to control
|
635
|
+
"""
|
636
|
+
qt.QWidget.__init__(self, parent)
|
637
|
+
self.setLayout(qt.QGridLayout())
|
638
|
+
self.layout().setContentsMargins(0, 0, 0, 0)
|
639
|
+
|
640
|
+
self._leftButton = qt.QPushButton("left", parent=self)
|
641
|
+
self.layout().addWidget(self._leftButton, 1, 0)
|
642
|
+
|
643
|
+
self._rightButton = qt.QPushButton("right", parent=self)
|
644
|
+
self.layout().addWidget(self._rightButton, 1, 3)
|
645
|
+
|
646
|
+
self._shiftInfo = _ShiftInformation(parent=self)
|
647
|
+
self.layout().addWidget(self._shiftInfo, 1, 1)
|
648
|
+
self._shiftInfo._updateShiftInfo(x=0.0, y=0.0)
|
649
|
+
|
650
|
+
self._topButton = qt.QPushButton("top", parent=self)
|
651
|
+
self.layout().addWidget(self._topButton, 0, 1)
|
652
|
+
|
653
|
+
self._bottomButton = qt.QPushButton("bottom", parent=self)
|
654
|
+
self.layout().addWidget(self._bottomButton, 2, 1)
|
655
|
+
|
656
|
+
self._resetButton = qt.QPushButton("reset", parent=self)
|
657
|
+
self.layout().addWidget(self._resetButton, 3, 2, 3, 4)
|
658
|
+
|
659
|
+
self._autoButton = qt.QPushButton("auto", parent=self)
|
660
|
+
self.layout().addWidget(self._autoButton, 3, 0, 3, 2)
|
661
|
+
self._autoButton.hide()
|
662
|
+
|
663
|
+
# Signal / Slot connection
|
664
|
+
self._leftButton.pressed.connect(self.sigShiftLeft.emit)
|
665
|
+
self._rightButton.pressed.connect(self.sigShiftRight.emit)
|
666
|
+
self._topButton.pressed.connect(self.sigShiftTop.emit)
|
667
|
+
self._bottomButton.pressed.connect(self.sigShiftBottom.emit)
|
668
|
+
self._resetButton.pressed.connect(self.sigReset.emit)
|
669
|
+
self._autoButton.pressed.connect(self.sigAuto.emit)
|
670
|
+
self._shiftInfo.sigShiftChanged.connect(self.sigShiftChanged.emit)
|
671
|
+
|
672
|
+
# expose API
|
673
|
+
self._updateShiftInfo = self._shiftInfo._updateShiftInfo
|
674
|
+
|
675
|
+
self.setShiftMode(shift_mode)
|
676
|
+
|
677
|
+
def setShiftMode(self, shift_mode):
|
678
|
+
show_x_shift = shift_mode in (ShiftMode.x_only, ShiftMode.x_and_y)
|
679
|
+
show_y_shift = shift_mode in (ShiftMode.y_only, ShiftMode.x_and_y)
|
680
|
+
self._leftButton.setVisible(show_x_shift)
|
681
|
+
self._rightButton.setVisible(show_x_shift)
|
682
|
+
self._topButton.setVisible(show_y_shift)
|
683
|
+
self._bottomButton.setVisible(show_y_shift)
|
684
|
+
self._shiftInfo._xLE.setVisible(show_x_shift)
|
685
|
+
self._shiftInfo._xLabel.setVisible(show_x_shift)
|
686
|
+
self._shiftInfo._yLE.setVisible(show_y_shift)
|
687
|
+
self._shiftInfo._yLabel.setVisible(show_y_shift)
|
688
|
+
|
689
|
+
|
690
|
+
class _ImgOpts(qt.QGroupBox):
|
691
|
+
sigSubSamplingChanged = qt.Signal()
|
692
|
+
"""Signal emitted when the sub sampling change"""
|
693
|
+
|
694
|
+
def __init__(self, parent, title="Image Option"):
|
695
|
+
super().__init__(title, parent)
|
696
|
+
self.setLayout(qt.QFormLayout())
|
697
|
+
self._subSamplingQSpinBox = qt.QSpinBox(self)
|
698
|
+
self.layout().addRow("sub-sampling:", self._subSamplingQSpinBox)
|
699
|
+
self._subSamplingQSpinBox.setMinimum(1)
|
700
|
+
|
701
|
+
# set up
|
702
|
+
self._subSamplingQSpinBox.setValue(1)
|
703
|
+
|
704
|
+
# connect signal / slot
|
705
|
+
self._subSamplingQSpinBox.valueChanged.connect(self._subSamplingChanged)
|
706
|
+
|
707
|
+
def _subSamplingChanged(self):
|
708
|
+
self.sigSubSamplingChanged.emit()
|
709
|
+
|
710
|
+
def getSubSampling(self):
|
711
|
+
return self._subSamplingQSpinBox.value()
|
712
|
+
|
713
|
+
def setSubSampling(self, value):
|
714
|
+
return self._subSamplingQSpinBox.setValue(int(value))
|
715
|
+
|
716
|
+
|
717
|
+
class _ShiftInformation(qt.QWidget):
|
718
|
+
"""
|
719
|
+
Widget displaying information about the current x and y shift.
|
720
|
+
Both x shift and y shift are editable.
|
721
|
+
"""
|
722
|
+
|
723
|
+
class _ShiftLineEdit(qt.QLineEdit):
|
724
|
+
def __init__(self, *args, **kwargs):
|
725
|
+
qt.QLineEdit.__init__(self, *args, **kwargs)
|
726
|
+
self._defaultBackgroundColor = None
|
727
|
+
# validator
|
728
|
+
validator = qt.QDoubleValidator(parent=self, decimals=2)
|
729
|
+
self.setValidator(validator)
|
730
|
+
self._getDefaultBackgroundColor()
|
731
|
+
# connect signal / slot
|
732
|
+
self.textEdited.connect(self._userEditing)
|
733
|
+
self.editingFinished.connect(self._userEndEditing)
|
734
|
+
|
735
|
+
def sizeHint(self):
|
736
|
+
return qt.QSize(40, 10)
|
737
|
+
|
738
|
+
def _getDefaultBackgroundColor(self):
|
739
|
+
if self._defaultBackgroundColor is None:
|
740
|
+
self._defaultBackgroundColor = self.palette().color(
|
741
|
+
self.backgroundRole()
|
742
|
+
)
|
743
|
+
return self._defaultBackgroundColor
|
744
|
+
|
745
|
+
def _userEditing(self, *args, **kwargs):
|
746
|
+
palette = self.palette()
|
747
|
+
palette.setColor(self.backgroundRole(), EDITING_BACKGROUND_COLOR)
|
748
|
+
self.setPalette(palette)
|
749
|
+
|
750
|
+
def _userEndEditing(self, *args, **kwargs):
|
751
|
+
palette = self.palette()
|
752
|
+
palette.setColor(
|
753
|
+
self.backgroundRole(),
|
754
|
+
self._getDefaultBackgroundColor(),
|
755
|
+
)
|
756
|
+
self.setPalette(palette)
|
757
|
+
|
758
|
+
sigShiftChanged = qt.Signal(float, float)
|
759
|
+
"""Signal emitted ony when xLE and yLE edition is finished"""
|
760
|
+
|
761
|
+
def __init__(self, parent):
|
762
|
+
qt.QWidget.__init__(self, parent)
|
763
|
+
self.setLayout(qt.QHBoxLayout())
|
764
|
+
self.layout().setContentsMargins(0, 0, 0, 0)
|
765
|
+
self.layout().setSpacing(0)
|
766
|
+
|
767
|
+
self._xLabel = qt.QLabel("x=", parent=self)
|
768
|
+
self.layout().addWidget(self._xLabel)
|
769
|
+
self._xLE = _ShiftInformation._ShiftLineEdit("", parent=self)
|
770
|
+
self.layout().addWidget(self._xLE)
|
771
|
+
|
772
|
+
self._yLabel = qt.QLabel("y=", parent=self)
|
773
|
+
self.layout().addWidget(self._yLabel)
|
774
|
+
self._yLE = _ShiftInformation._ShiftLineEdit("", parent=self)
|
775
|
+
self.layout().addWidget(self._yLE)
|
776
|
+
|
777
|
+
# connect Signal / Slot
|
778
|
+
self._xLE.editingFinished.connect(self._shiftChanged)
|
779
|
+
self._yLE.editingFinished.connect(self._shiftChanged)
|
780
|
+
|
781
|
+
def _updateShiftInfo(self, x, y):
|
782
|
+
with block_signals(self):
|
783
|
+
if x is None:
|
784
|
+
x = 0.0
|
785
|
+
if y is None:
|
786
|
+
y = 0.0
|
787
|
+
x_text = x
|
788
|
+
if x_text != "...":
|
789
|
+
x_text = "%.1f" % float(x)
|
790
|
+
y_text = y
|
791
|
+
if y_text != "...":
|
792
|
+
y_text = "%.1f" % float(y)
|
793
|
+
self._xLE.setText(x_text)
|
794
|
+
self._yLE.setText(y_text)
|
795
|
+
|
796
|
+
def _shiftChanged(self, *args, **kwargs):
|
797
|
+
self.sigShiftChanged.emit(float(self._xLE.text()), float(self._yLE.text()))
|