simstack 2.0.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (354) hide show
  1. simstack/__init__.py +0 -0
  2. simstack/_version.py +24 -0
  3. simstack/core/__init__.py +0 -0
  4. simstack/core/artifacts.py +406 -0
  5. simstack/core/asnyc_helper.py +14 -0
  6. simstack/core/config_file.py +60 -0
  7. simstack/core/context.py +283 -0
  8. simstack/core/definitions.py +22 -0
  9. simstack/core/engine.py +115 -0
  10. simstack/core/find_simstack_modules.py +41 -0
  11. simstack/core/hash.py +179 -0
  12. simstack/core/node.py +1137 -0
  13. simstack/core/node_claim.py +31 -0
  14. simstack/core/node_runner.py +362 -0
  15. simstack/core/process_results.py +102 -0
  16. simstack/core/recompute_artifacts.py +117 -0
  17. simstack/core/reset_db.py +12 -0
  18. simstack/core/resource_assignment.py +222 -0
  19. simstack/core/resources.py +90 -0
  20. simstack/core/route_table.py +24 -0
  21. simstack/core/run_docker.py +109 -0
  22. simstack/core/run_node.py +71 -0
  23. simstack/core/runner.py +169 -0
  24. simstack/core/services/__init__.py +11 -0
  25. simstack/core/services/base_service.py +191 -0
  26. simstack/core/services/file_transfer_service.py +117 -0
  27. simstack/core/services/git_restart_service.py +12 -0
  28. simstack/core/services/git_uv_update_service.py +105 -0
  29. simstack/core/services/node_execution_service.py +182 -0
  30. simstack/core/services/resource_branch_monitor_service.py +71 -0
  31. simstack/core/services/runner_cleanup_service.py +149 -0
  32. simstack/core/services/runner_manager.py +163 -0
  33. simstack/core/services/runner_status_service.py +10 -0
  34. simstack/core/services/slurm_status_service.py +67 -0
  35. simstack/core/services/stop_check_service.py +27 -0
  36. simstack/core/services/timeout_restart_service.py +26 -0
  37. simstack/core/simstack_result.py +39 -0
  38. simstack/core/submit_node.py +217 -0
  39. simstack/core/task_id.py +22 -0
  40. simstack/methods/__init__.py +0 -0
  41. simstack/methods/archive_files.py +292 -0
  42. simstack/methods/fire_and_forget_runner.py +113 -0
  43. simstack/methods/generate_test.py +125 -0
  44. simstack/methods/get_file.py +26 -0
  45. simstack/methods/mass_runner.py +154 -0
  46. simstack/methods/multiple_executor.py +307 -0
  47. simstack/methods/switch_git.py +16 -0
  48. simstack/methods/upload_helpers.py +81 -0
  49. simstack/models/__init__.py +74 -0
  50. simstack/models/array_list.py +21 -0
  51. simstack/models/array_storage.py +83 -0
  52. simstack/models/artifact_models.py +127 -0
  53. simstack/models/base_lists.py +51 -0
  54. simstack/models/base_types.py +209 -0
  55. simstack/models/charts_artifact.py +690 -0
  56. simstack/models/dataset.py +451 -0
  57. simstack/models/dataset_metadata.py +390 -0
  58. simstack/models/datasettuple.py +587 -0
  59. simstack/models/file_instance.py +150 -0
  60. simstack/models/file_list.py +45 -0
  61. simstack/models/files.py +424 -0
  62. simstack/models/fire_and_forget_result.py +19 -0
  63. simstack/models/images2d.py +113 -0
  64. simstack/models/log_entry_model.py +37 -0
  65. simstack/models/models.py +52 -0
  66. simstack/models/named_data_reference.py +36 -0
  67. simstack/models/node_registry.py +96 -0
  68. simstack/models/pandas_model.py +239 -0
  69. simstack/models/parameters.py +402 -0
  70. simstack/models/pickle_models.py +300 -0
  71. simstack/models/project.py +13 -0
  72. simstack/models/resource_assignment.py +170 -0
  73. simstack/models/resource_definition.py +125 -0
  74. simstack/models/runner_model.py +39 -0
  75. simstack/models/simple_table.py +79 -0
  76. simstack/models/simstack_model.py +97 -0
  77. simstack/models/slurm_info.py +17 -0
  78. simstack/models/table_artifact.py +87 -0
  79. simstack/models/tag.py +12 -0
  80. simstack/models/unused_test_file.py +5 -0
  81. simstack/simstack_marker.com +1 -0
  82. simstack/static/docs/.buildinfo +4 -0
  83. simstack/static/docs/_images/GUI Concept.webp +0 -0
  84. simstack/static/docs/_modules/index.html +434 -0
  85. simstack/static/docs/_modules/simstack/core/artifacts.html +743 -0
  86. simstack/static/docs/_modules/simstack/core/asnyc_helper.html +330 -0
  87. simstack/static/docs/_modules/simstack/core/config_file.html +379 -0
  88. simstack/static/docs/_modules/simstack/core/definitions.html +341 -0
  89. simstack/static/docs/_modules/simstack/core/engine.html +437 -0
  90. simstack/static/docs/_modules/simstack/core/find_simstack_modules.html +360 -0
  91. simstack/static/docs/_modules/simstack/core/hash.html +528 -0
  92. simstack/static/docs/_modules/simstack/core/node.html +1392 -0
  93. simstack/static/docs/_modules/simstack/core/node_claim.html +347 -0
  94. simstack/static/docs/_modules/simstack/core/node_runner.html +711 -0
  95. simstack/static/docs/_modules/simstack/core/process_results.html +418 -0
  96. simstack/static/docs/_modules/simstack/core/recompute_artifacts.html +433 -0
  97. simstack/static/docs/_modules/simstack/core/reset_db.html +328 -0
  98. simstack/static/docs/_modules/simstack/core/resource_assignment.html +553 -0
  99. simstack/static/docs/_modules/simstack/core/resources.html +424 -0
  100. simstack/static/docs/_modules/simstack/core/route_table.html +349 -0
  101. simstack/static/docs/_modules/simstack/core/run_docker.html +425 -0
  102. simstack/static/docs/_modules/simstack/core/run_node.html +390 -0
  103. simstack/static/docs/_modules/simstack/core/runner.html +491 -0
  104. simstack/static/docs/_modules/simstack/core/services/base_service.html +522 -0
  105. simstack/static/docs/_modules/simstack/core/services/file_transfer_service.html +436 -0
  106. simstack/static/docs/_modules/simstack/core/services/git_restart_service.html +331 -0
  107. simstack/static/docs/_modules/simstack/core/services/git_uv_update_service.html +427 -0
  108. simstack/static/docs/_modules/simstack/core/services/node_execution_service.html +507 -0
  109. simstack/static/docs/_modules/simstack/core/services/resource_branch_monitor_service.html +390 -0
  110. simstack/static/docs/_modules/simstack/core/services/runner_cleanup_service.html +468 -0
  111. simstack/static/docs/_modules/simstack/core/services/runner_manager.html +485 -0
  112. simstack/static/docs/_modules/simstack/core/services/runner_status_service.html +329 -0
  113. simstack/static/docs/_modules/simstack/core/services/slurm_status_service.html +386 -0
  114. simstack/static/docs/_modules/simstack/core/services/stop_check_service.html +346 -0
  115. simstack/static/docs/_modules/simstack/core/services/timeout_restart_service.html +345 -0
  116. simstack/static/docs/_modules/simstack/core/simstack_result.html +355 -0
  117. simstack/static/docs/_modules/simstack/core/submit_node.html +536 -0
  118. simstack/static/docs/_modules/simstack/core/task_id.html +344 -0
  119. simstack/static/docs/_modules/simstack/methods/archive_files.html +598 -0
  120. simstack/static/docs/_modules/simstack/methods/fire_and_forget_runner.html +432 -0
  121. simstack/static/docs/_modules/simstack/methods/generate_test.html +443 -0
  122. simstack/static/docs/_modules/simstack/methods/get_file.html +342 -0
  123. simstack/static/docs/_modules/simstack/methods/mass_runner.html +476 -0
  124. simstack/static/docs/_modules/simstack/methods/multiple_executor.html +674 -0
  125. simstack/static/docs/_modules/simstack/methods/switch_git.html +332 -0
  126. simstack/static/docs/_modules/simstack/methods/upload_helpers.html +403 -0
  127. simstack/static/docs/_modules/simstack/models/array_list.html +337 -0
  128. simstack/static/docs/_modules/simstack/models/array_storage.html +417 -0
  129. simstack/static/docs/_modules/simstack/models/base_lists.html +374 -0
  130. simstack/static/docs/_modules/simstack/models/base_types.html +588 -0
  131. simstack/static/docs/_modules/simstack/models/charts_artifact.html +1035 -0
  132. simstack/static/docs/_modules/simstack/models/dataset.html +866 -0
  133. simstack/static/docs/_modules/simstack/models/dataset_metadata.html +711 -0
  134. simstack/static/docs/_modules/simstack/models/datasettuple.html +1005 -0
  135. simstack/static/docs/_modules/simstack/models/file_instance.html +472 -0
  136. simstack/static/docs/_modules/simstack/models/file_list.html +367 -0
  137. simstack/static/docs/_modules/simstack/models/files.html +773 -0
  138. simstack/static/docs/_modules/simstack/models/fire_and_forget_result.html +335 -0
  139. simstack/static/docs/_modules/simstack/models/images2d.html +447 -0
  140. simstack/static/docs/_modules/simstack/models/log_entry_model.html +356 -0
  141. simstack/static/docs/_modules/simstack/models/models.html +374 -0
  142. simstack/static/docs/_modules/simstack/models/named_data_reference.html +355 -0
  143. simstack/static/docs/_modules/simstack/models/node_registry.html +415 -0
  144. simstack/static/docs/_modules/simstack/models/pandas_model.html +570 -0
  145. simstack/static/docs/_modules/simstack/models/parameters.html +739 -0
  146. simstack/static/docs/_modules/simstack/models/pickle_models.html +631 -0
  147. simstack/static/docs/_modules/simstack/models/project.html +329 -0
  148. simstack/static/docs/_modules/simstack/models/resource_assignment.html +501 -0
  149. simstack/static/docs/_modules/simstack/models/resource_definition.html +477 -0
  150. simstack/static/docs/_modules/simstack/models/runner_model.html +361 -0
  151. simstack/static/docs/_modules/simstack/models/simple_table.html +413 -0
  152. simstack/static/docs/_modules/simstack/models/simstack_model.html +416 -0
  153. simstack/static/docs/_modules/simstack/models/slurm_info.html +333 -0
  154. simstack/static/docs/_modules/simstack/models/table_artifact.html +406 -0
  155. simstack/static/docs/_modules/simstack/models/tag.html +328 -0
  156. simstack/static/docs/_modules/simstack/tables/model_table.html +519 -0
  157. simstack/static/docs/_modules/simstack/tables/node_children.html +538 -0
  158. simstack/static/docs/_modules/simstack/tables/node_table.html +854 -0
  159. simstack/static/docs/_modules/simstack/tables/table_builder.html +642 -0
  160. simstack/static/docs/_modules/simstack/util/async_zip_utils.html +337 -0
  161. simstack/static/docs/_modules/simstack/util/b64mixin.html +339 -0
  162. simstack/static/docs/_modules/simstack/util/cleaned_json_schema.html +336 -0
  163. simstack/static/docs/_modules/simstack/util/config_reader.html +498 -0
  164. simstack/static/docs/_modules/simstack/util/custom_model_dump.html +391 -0
  165. simstack/static/docs/_modules/simstack/util/database_information.html +488 -0
  166. simstack/static/docs/_modules/simstack/util/db.html +1392 -0
  167. simstack/static/docs/_modules/simstack/util/db_logger.html +448 -0
  168. simstack/static/docs/_modules/simstack/util/default_from_dict.html +376 -0
  169. simstack/static/docs/_modules/simstack/util/directory_iterator.html +553 -0
  170. simstack/static/docs/_modules/simstack/util/docstring_parser.html +526 -0
  171. simstack/static/docs/_modules/simstack/util/file_hashing.html +394 -0
  172. simstack/static/docs/_modules/simstack/util/file_transfer_client.html +791 -0
  173. simstack/static/docs/_modules/simstack/util/files.html +733 -0
  174. simstack/static/docs/_modules/simstack/util/find_python_files.html +349 -0
  175. simstack/static/docs/_modules/simstack/util/generate_ui_schema.html +396 -0
  176. simstack/static/docs/_modules/simstack/util/generic_list_mixin.html +487 -0
  177. simstack/static/docs/_modules/simstack/util/get_module_path.html +336 -0
  178. simstack/static/docs/_modules/simstack/util/git_pull.html +381 -0
  179. simstack/static/docs/_modules/simstack/util/git_repository_status.html +411 -0
  180. simstack/static/docs/_modules/simstack/util/import_module.html +377 -0
  181. simstack/static/docs/_modules/simstack/util/importer.html +637 -0
  182. simstack/static/docs/_modules/simstack/util/init_data_source.html +357 -0
  183. simstack/static/docs/_modules/simstack/util/make_graph.html +423 -0
  184. simstack/static/docs/_modules/simstack/util/make_table.html +1171 -0
  185. simstack/static/docs/_modules/simstack/util/mappings.html +378 -0
  186. simstack/static/docs/_modules/simstack/util/minimal_route_finder.html +388 -0
  187. simstack/static/docs/_modules/simstack/util/mock_db.html +472 -0
  188. simstack/static/docs/_modules/simstack/util/module_path_checker.html +354 -0
  189. simstack/static/docs/_modules/simstack/util/object_list_mixin.html +649 -0
  190. simstack/static/docs/_modules/simstack/util/path_manager.html +566 -0
  191. simstack/static/docs/_modules/simstack/util/project_root_finder.html +357 -0
  192. simstack/static/docs/_modules/simstack/util/queue_watcher.html +593 -0
  193. simstack/static/docs/_modules/simstack/util/resource_config.html +532 -0
  194. simstack/static/docs/_modules/simstack/util/route_finder.html +390 -0
  195. simstack/static/docs/_modules/simstack/util/runner_util.html +487 -0
  196. simstack/static/docs/_modules/simstack/util/runner_utils.html +468 -0
  197. simstack/static/docs/_modules/simstack/util/safe_code_executor.html +510 -0
  198. simstack/static/docs/_modules/simstack/util/sample_config.html +414 -0
  199. simstack/static/docs/_modules/simstack/util/sensitive_content_filter.html +364 -0
  200. simstack/static/docs/_modules/simstack/util/setup_logging.html +365 -0
  201. simstack/static/docs/_modules/simstack/util/submit_to_watchdog.html +425 -0
  202. simstack/static/docs/_modules/simstack/util/toml_reader.html +482 -0
  203. simstack/static/docs/_modules/simstack/util/transform_file_name.html +357 -0
  204. simstack/static/docs/_modules/simstack/util/ui_tools.html +541 -0
  205. simstack/static/docs/_sources/architecture.rst.txt +25 -0
  206. simstack/static/docs/_sources/array_lists.rst.txt +60 -0
  207. simstack/static/docs/_sources/ci_pipeline.rst.txt +34 -0
  208. simstack/static/docs/_sources/data.rst.txt +175 -0
  209. simstack/static/docs/_sources/database_migrations.rst.txt +310 -0
  210. simstack/static/docs/_sources/datasets.rst.txt +93 -0
  211. simstack/static/docs/_sources/developer_guide.rst.txt +25 -0
  212. simstack/static/docs/_sources/docker_nodes.rst.txt +149 -0
  213. simstack/static/docs/_sources/files.rst.txt +159 -0
  214. simstack/static/docs/_sources/fire_and_forget_runner.rst.txt +67 -0
  215. simstack/static/docs/_sources/index.rst.txt +25 -0
  216. simstack/static/docs/_sources/installation.rst.txt +213 -0
  217. simstack/static/docs/_sources/lists.rst.txt +111 -0
  218. simstack/static/docs/_sources/mass_runner.rst.txt +91 -0
  219. simstack/static/docs/_sources/misc.rst.txt +106 -0
  220. simstack/static/docs/_sources/overview.rst.txt +91 -0
  221. simstack/static/docs/_sources/recovery.rst.txt +38 -0
  222. simstack/static/docs/_sources/resource_config.rst.txt +141 -0
  223. simstack/static/docs/_sources/simstack/modules/modules.rst.txt +7 -0
  224. simstack/static/docs/_sources/simstack/modules/simstack.core.rst.txt +205 -0
  225. simstack/static/docs/_sources/simstack/modules/simstack.core.services.rst.txt +109 -0
  226. simstack/static/docs/_sources/simstack/modules/simstack.methods.rst.txt +77 -0
  227. simstack/static/docs/_sources/simstack/modules/simstack.models.rst.txt +261 -0
  228. simstack/static/docs/_sources/simstack/modules/simstack.rst.txt +22 -0
  229. simstack/static/docs/_sources/simstack/modules/simstack.tables.rst.txt +45 -0
  230. simstack/static/docs/_sources/simstack/modules/simstack.util.rst.txt +381 -0
  231. simstack/static/docs/_sources/submit.rst.txt +141 -0
  232. simstack/static/docs/_sources/tables.rst.txt +50 -0
  233. simstack/static/docs/_sources/testing_complex_nodes.rst.txt +92 -0
  234. simstack/static/docs/_sources/ui_documentation.rst.txt +272 -0
  235. simstack/static/docs/_sources/workflows.rst.txt +446 -0
  236. simstack/static/docs/_static/base-stemmer.js +476 -0
  237. simstack/static/docs/_static/basic.css +906 -0
  238. simstack/static/docs/_static/cobalt2-theme.css +1 -0
  239. simstack/static/docs/_static/debug.css +69 -0
  240. simstack/static/docs/_static/docs-build-badge.css +51 -0
  241. simstack/static/docs/_static/docs-build-badge.js +51 -0
  242. simstack/static/docs/_static/doctools.js +150 -0
  243. simstack/static/docs/_static/documentation_options.js +13 -0
  244. simstack/static/docs/_static/english-stemmer.js +1066 -0
  245. simstack/static/docs/_static/file.png +0 -0
  246. simstack/static/docs/_static/language_data.js +13 -0
  247. simstack/static/docs/_static/minus.png +0 -0
  248. simstack/static/docs/_static/plus.png +0 -0
  249. simstack/static/docs/_static/pygments.css +250 -0
  250. simstack/static/docs/_static/scripts/furo-extensions.js +0 -0
  251. simstack/static/docs/_static/scripts/furo.js +3 -0
  252. simstack/static/docs/_static/scripts/furo.js.LICENSE.txt +7 -0
  253. simstack/static/docs/_static/scripts/furo.js.map +1 -0
  254. simstack/static/docs/_static/searchtools.js +693 -0
  255. simstack/static/docs/_static/skeleton.css +296 -0
  256. simstack/static/docs/_static/sphinx_highlight.js +159 -0
  257. simstack/static/docs/_static/styles/furo-extensions.css +2 -0
  258. simstack/static/docs/_static/styles/furo-extensions.css.map +1 -0
  259. simstack/static/docs/_static/styles/furo.css +2 -0
  260. simstack/static/docs/_static/styles/furo.css.map +1 -0
  261. simstack/static/docs/architecture.html +340 -0
  262. simstack/static/docs/array_lists.html +678 -0
  263. simstack/static/docs/ci_pipeline.html +385 -0
  264. simstack/static/docs/data.html +545 -0
  265. simstack/static/docs/database_migrations.html +652 -0
  266. simstack/static/docs/datasets.html +1268 -0
  267. simstack/static/docs/developer_guide.html +359 -0
  268. simstack/static/docs/docker_nodes.html +503 -0
  269. simstack/static/docs/files.html +718 -0
  270. simstack/static/docs/fire_and_forget_runner.html +641 -0
  271. simstack/static/docs/genindex.html +6390 -0
  272. simstack/static/docs/index.html +516 -0
  273. simstack/static/docs/installation.html +553 -0
  274. simstack/static/docs/lists.html +478 -0
  275. simstack/static/docs/mass_runner.html +481 -0
  276. simstack/static/docs/misc.html +454 -0
  277. simstack/static/docs/objects.inv +0 -0
  278. simstack/static/docs/overview.html +469 -0
  279. simstack/static/docs/py-modindex.html +1111 -0
  280. simstack/static/docs/recovery.html +371 -0
  281. simstack/static/docs/resource_config.html +590 -0
  282. simstack/static/docs/search.html +327 -0
  283. simstack/static/docs/searchindex.js +1 -0
  284. simstack/static/docs/simstack/modules/modules.html +489 -0
  285. simstack/static/docs/simstack/modules/simstack.core.html +1883 -0
  286. simstack/static/docs/simstack/modules/simstack.core.services.html +698 -0
  287. simstack/static/docs/simstack/modules/simstack.html +3060 -0
  288. simstack/static/docs/simstack/modules/simstack.methods.html +1150 -0
  289. simstack/static/docs/simstack/modules/simstack.models.html +13113 -0
  290. simstack/static/docs/simstack/modules/simstack.tables.html +635 -0
  291. simstack/static/docs/simstack/modules/simstack.util.html +3320 -0
  292. simstack/static/docs/submit.html +487 -0
  293. simstack/static/docs/tables.html +539 -0
  294. simstack/static/docs/testing_complex_nodes.html +458 -0
  295. simstack/static/docs/ui_documentation.html +788 -0
  296. simstack/static/docs/workflows.html +766 -0
  297. simstack/tables/__init__.py +0 -0
  298. simstack/tables/model_table.py +191 -0
  299. simstack/tables/node_children.py +219 -0
  300. simstack/tables/node_table.py +517 -0
  301. simstack/tables/table_builder.py +314 -0
  302. simstack/util/__init__.py +0 -0
  303. simstack/util/async_zip_utils.py +18 -0
  304. simstack/util/b64mixin.py +23 -0
  305. simstack/util/cleaned_json_schema.py +20 -0
  306. simstack/util/config_reader.py +179 -0
  307. simstack/util/custom_model_dump.py +75 -0
  308. simstack/util/database_information.py +160 -0
  309. simstack/util/db.py +1013 -0
  310. simstack/util/db_logger.py +117 -0
  311. simstack/util/default_from_dict.py +57 -0
  312. simstack/util/directory_iterator.py +216 -0
  313. simstack/util/docstring_parser.py +186 -0
  314. simstack/util/file_hashing.py +72 -0
  315. simstack/util/file_transfer_client.py +427 -0
  316. simstack/util/files.py +396 -0
  317. simstack/util/find_python_files.py +33 -0
  318. simstack/util/generate_ui_schema.py +80 -0
  319. simstack/util/generic_list_mixin.py +120 -0
  320. simstack/util/geometry_utils.py +118 -0
  321. simstack/util/get_module_path.py +20 -0
  322. simstack/util/git_pull.py +65 -0
  323. simstack/util/git_repository_status.py +95 -0
  324. simstack/util/import_module.py +63 -0
  325. simstack/util/importer.py +312 -0
  326. simstack/util/init_data_source.py +41 -0
  327. simstack/util/make_graph.py +107 -0
  328. simstack/util/make_table.py +837 -0
  329. simstack/util/mappings.py +41 -0
  330. simstack/util/minimal_route_finder.py +72 -0
  331. simstack/util/mock_db.py +144 -0
  332. simstack/util/module_path_checker.py +38 -0
  333. simstack/util/object_list_mixin.py +282 -0
  334. simstack/util/path_manager.py +223 -0
  335. simstack/util/project_root_finder.py +41 -0
  336. simstack/util/queue_watcher.py +262 -0
  337. simstack/util/resource_config.py +198 -0
  338. simstack/util/route_finder.py +74 -0
  339. simstack/util/runner_util.py +166 -0
  340. simstack/util/runner_utils.py +143 -0
  341. simstack/util/safe_code_executor.py +194 -0
  342. simstack/util/sample_config.py +98 -0
  343. simstack/util/sensitive_content_filter.py +48 -0
  344. simstack/util/setup_logging.py +49 -0
  345. simstack/util/submit_to_watchdog.py +106 -0
  346. simstack/util/toml_reader.py +142 -0
  347. simstack/util/transform_file_name.py +41 -0
  348. simstack/util/ui_tools.py +213 -0
  349. simstack-2.0.1.dist-info/METADATA +454 -0
  350. simstack-2.0.1.dist-info/RECORD +354 -0
  351. simstack-2.0.1.dist-info/WHEEL +5 -0
  352. simstack-2.0.1.dist-info/entry_points.txt +12 -0
  353. simstack-2.0.1.dist-info/licenses/LICENSE +21 -0
  354. simstack-2.0.1.dist-info/top_level.txt +1 -0
simstack/static/docs/index.html ADDED
@@ -0,0 +1,516 @@
1
+ <!doctype html>
2
+ <html class="no-js" lang="en" data-content_root="./">
3
+ <head><meta charset="utf-8">
4
+ <meta name="viewport" content="width=device-width,initial-scale=1">
5
+ <meta name="color-scheme" content="light dark"><meta name="viewport" content="width=device-width, initial-scale=1" />
6
+ <link rel="index" title="Index" href="genindex.html"><link rel="search" title="Search" href="search.html"><link rel="next" title="Overview" href="overview.html">
7
+
8
+ <!-- Generated with Sphinx 9.1.0 and Furo 2025.12.19 -->
9
+ <title>SimStack II documentation</title>
10
+ <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=d111a655" />
11
+ <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?v=7bdb33bb" />
12
+ <link rel="stylesheet" type="text/css" href="_static/styles/furo-extensions.css?v=8dab3a3b" />
13
+ <link rel="stylesheet" type="text/css" href="_static/cobalt2-theme.css?v=2d651046" />
14
+ <link rel="stylesheet" type="text/css" href="_static/docs-build-badge.css?v=803faff8" />
15
+
16
+
17
+
18
+
19
+ <style>
20
+ body {
21
+ --color-code-background: #f2f2f2;
22
+ --color-code-foreground: #1e1e1e;
23
+
24
+ }
25
+ @media not print {
26
+ body[data-theme="dark"] {
27
+ --color-code-background: #202020;
28
+ --color-code-foreground: #d0d0d0;
29
+ --color-background-primary: #132738;
30
+ --color-background-secondary: #1e3a52;
31
+ --color-foreground-primary: #ffffff;
32
+ --color-foreground-secondary: #bac8d3;
33
+ --color-brand-primary: #22d5ff;
34
+ --color-brand-content: #0088ff;
35
+
36
+ }
37
+ @media (prefers-color-scheme: dark) {
38
+ body:not([data-theme="light"]) {
39
+ --color-code-background: #202020;
40
+ --color-code-foreground: #d0d0d0;
41
+ --color-background-primary: #132738;
42
+ --color-background-secondary: #1e3a52;
43
+ --color-foreground-primary: #ffffff;
44
+ --color-foreground-secondary: #bac8d3;
45
+ --color-brand-primary: #22d5ff;
46
+ --color-brand-content: #0088ff;
47
+
48
+ }
49
+ }
50
+ }
51
+ </style></head>
52
+ <body>
53
+
54
+ <script>
55
+ document.body.dataset.theme = localStorage.getItem("theme") || "auto";
56
+ </script>
57
+
58
+
59
+ <svg xmlns="http://www.w3.org/2000/svg" style="display: none;">
60
+ <symbol id="svg-toc" viewBox="0 0 24 24">
61
+ <title>Contents</title>
62
+ <svg stroke="currentColor" fill="currentColor" stroke-width="0" viewBox="0 0 1024 1024">
63
+ <path d="M408 442h480c4.4 0 8-3.6 8-8v-56c0-4.4-3.6-8-8-8H408c-4.4 0-8 3.6-8 8v56c0 4.4 3.6 8 8 8zm-8 204c0 4.4 3.6 8 8 8h480c4.4 0 8-3.6 8-8v-56c0-4.4-3.6-8-8-8H408c-4.4 0-8 3.6-8 8v56zm504-486H120c-4.4 0-8 3.6-8 8v56c0 4.4 3.6 8 8 8h784c4.4 0 8-3.6 8-8v-56c0-4.4-3.6-8-8-8zm0 632H120c-4.4 0-8 3.6-8 8v56c0 4.4 3.6 8 8 8h784c4.4 0 8-3.6 8-8v-56c0-4.4-3.6-8-8-8zM115.4 518.9L271.7 642c5.8 4.6 14.4.5 14.4-6.9V388.9c0-7.4-8.5-11.5-14.4-6.9L115.4 505.1a8.74 8.74 0 0 0 0 13.8z"/>
64
+ </svg>
65
+ </symbol>
66
+ <symbol id="svg-menu" viewBox="0 0 24 24">
67
+ <title>Menu</title>
68
+ <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
69
+ stroke-width="2" stroke-linecap="round" stroke-linejoin="round" class="feather-menu">
70
+ <line x1="3" y1="12" x2="21" y2="12"></line>
71
+ <line x1="3" y1="6" x2="21" y2="6"></line>
72
+ <line x1="3" y1="18" x2="21" y2="18"></line>
73
+ </svg>
74
+ </symbol>
75
+ <symbol id="svg-arrow-right" viewBox="0 0 24 24">
76
+ <title>Expand</title>
77
+ <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
78
+ stroke-width="2" stroke-linecap="round" stroke-linejoin="round" class="feather-chevron-right">
79
+ <polyline points="9 18 15 12 9 6"></polyline>
80
+ </svg>
81
+ </symbol>
82
+ <symbol id="svg-sun" viewBox="0 0 24 24">
83
+ <title>Light mode</title>
84
+ <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
85
+ stroke-width="1" stroke-linecap="round" stroke-linejoin="round" class="feather-sun">
86
+ <circle cx="12" cy="12" r="5"></circle>
87
+ <line x1="12" y1="1" x2="12" y2="3"></line>
88
+ <line x1="12" y1="21" x2="12" y2="23"></line>
89
+ <line x1="4.22" y1="4.22" x2="5.64" y2="5.64"></line>
90
+ <line x1="18.36" y1="18.36" x2="19.78" y2="19.78"></line>
91
+ <line x1="1" y1="12" x2="3" y2="12"></line>
92
+ <line x1="21" y1="12" x2="23" y2="12"></line>
93
+ <line x1="4.22" y1="19.78" x2="5.64" y2="18.36"></line>
94
+ <line x1="18.36" y1="5.64" x2="19.78" y2="4.22"></line>
95
+ </svg>
96
+ </symbol>
97
+ <symbol id="svg-moon" viewBox="0 0 24 24">
98
+ <title>Dark mode</title>
99
+ <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
100
+ stroke-width="1" stroke-linecap="round" stroke-linejoin="round" class="icon-tabler-moon">
101
+ <path stroke="none" d="M0 0h24v24H0z" fill="none" />
102
+ <path d="M12 3c.132 0 .263 0 .393 0a7.5 7.5 0 0 0 7.92 12.446a9 9 0 1 1 -8.313 -12.454z" />
103
+ </svg>
104
+ </symbol>
105
+ <symbol id="svg-sun-with-moon" viewBox="0 0 24 24">
106
+ <title>Auto light/dark, in light mode</title>
107
+ <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
108
+ stroke-width="1" stroke-linecap="round" stroke-linejoin="round"
109
+ class="icon-custom-derived-from-feather-sun-and-tabler-moon">
110
+ <path style="opacity: 50%" d="M 5.411 14.504 C 5.471 14.504 5.532 14.504 5.591 14.504 C 3.639 16.319 4.383 19.569 6.931 20.352 C 7.693 20.586 8.512 20.551 9.25 20.252 C 8.023 23.207 4.056 23.725 2.11 21.184 C 0.166 18.642 1.702 14.949 4.874 14.536 C 5.051 14.512 5.231 14.5 5.411 14.5 L 5.411 14.504 Z"/>
111
+ <line x1="14.5" y1="3.25" x2="14.5" y2="1.25"/>
112
+ <line x1="14.5" y1="15.85" x2="14.5" y2="17.85"/>
113
+ <line x1="10.044" y1="5.094" x2="8.63" y2="3.68"/>
114
+ <line x1="19" y1="14.05" x2="20.414" y2="15.464"/>
115
+ <line x1="8.2" y1="9.55" x2="6.2" y2="9.55"/>
116
+ <line x1="20.8" y1="9.55" x2="22.8" y2="9.55"/>
117
+ <line x1="10.044" y1="14.006" x2="8.63" y2="15.42"/>
118
+ <line x1="19" y1="5.05" x2="20.414" y2="3.636"/>
119
+ <circle cx="14.5" cy="9.55" r="3.6"/>
120
+ </svg>
121
+ </symbol>
122
+ <symbol id="svg-moon-with-sun" viewBox="0 0 24 24">
123
+ <title>Auto light/dark, in dark mode</title>
124
+ <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
125
+ stroke-width="1" stroke-linecap="round" stroke-linejoin="round"
126
+ class="icon-custom-derived-from-feather-sun-and-tabler-moon">
127
+ <path d="M 8.282 7.007 C 8.385 7.007 8.494 7.007 8.595 7.007 C 5.18 10.184 6.481 15.869 10.942 17.24 C 12.275 17.648 13.706 17.589 15 17.066 C 12.851 22.236 5.91 23.143 2.505 18.696 C -0.897 14.249 1.791 7.786 7.342 7.063 C 7.652 7.021 7.965 7 8.282 7 L 8.282 7.007 Z"/>
128
+ <line style="opacity: 50%" x1="18" y1="3.705" x2="18" y2="2.5"/>
129
+ <line style="opacity: 50%" x1="18" y1="11.295" x2="18" y2="12.5"/>
130
+ <line style="opacity: 50%" x1="15.316" y1="4.816" x2="14.464" y2="3.964"/>
131
+ <line style="opacity: 50%" x1="20.711" y1="10.212" x2="21.563" y2="11.063"/>
132
+ <line style="opacity: 50%" x1="14.205" y1="7.5" x2="13.001" y2="7.5"/>
133
+ <line style="opacity: 50%" x1="21.795" y1="7.5" x2="23" y2="7.5"/>
134
+ <line style="opacity: 50%" x1="15.316" y1="10.184" x2="14.464" y2="11.036"/>
135
+ <line style="opacity: 50%" x1="20.711" y1="4.789" x2="21.563" y2="3.937"/>
136
+ <circle style="opacity: 50%" cx="18" cy="7.5" r="2.169"/>
137
+ </svg>
138
+ </symbol>
139
+ <symbol id="svg-pencil" viewBox="0 0 24 24">
140
+ <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
141
+ stroke-width="1" stroke-linecap="round" stroke-linejoin="round" class="icon-tabler-pencil-code">
142
+ <path d="M4 20h4l10.5 -10.5a2.828 2.828 0 1 0 -4 -4l-10.5 10.5v4" />
143
+ <path d="M13.5 6.5l4 4" />
144
+ <path d="M20 21l2 -2l-2 -2" />
145
+ <path d="M17 17l-2 2l2 2" />
146
+ </svg>
147
+ </symbol>
148
+ <symbol id="svg-eye" viewBox="0 0 24 24">
149
+ <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
150
+ stroke-width="1" stroke-linecap="round" stroke-linejoin="round" class="icon-tabler-eye-code">
151
+ <path stroke="none" d="M0 0h24v24H0z" fill="none" />
152
+ <path d="M10 12a2 2 0 1 0 4 0a2 2 0 0 0 -4 0" />
153
+ <path
154
+ d="M11.11 17.958c-3.209 -.307 -5.91 -2.293 -8.11 -5.958c2.4 -4 5.4 -6 9 -6c3.6 0 6.6 2 9 6c-.21 .352 -.427 .688 -.647 1.008" />
155
+ <path d="M20 21l2 -2l-2 -2" />
156
+ <path d="M17 17l-2 2l2 2" />
157
+ </svg>
158
+ </symbol>
159
+ </svg>
160
+
161
+ <input type="checkbox" class="sidebar-toggle" name="__navigation" id="__navigation" aria-label="Toggle site navigation sidebar">
162
+ <input type="checkbox" class="sidebar-toggle" name="__toc" id="__toc" aria-label="Toggle table of contents sidebar">
163
+ <label class="overlay sidebar-overlay" for="__navigation"></label>
164
+ <label class="overlay toc-overlay" for="__toc"></label>
165
+
166
+ <a class="skip-to-content muted-link" href="#furo-main-content">Skip to content</a>
167
+
168
+
169
+
170
+ <div class="page">
171
+ <header class="mobile-header">
172
+ <div class="header-left">
173
+ <label class="nav-overlay-icon" for="__navigation">
174
+ <span class="icon"><svg><use href="#svg-menu"></use></svg></span>
175
+ </label>
176
+ </div>
177
+ <div class="header-center">
178
+ <a href="#"><div class="brand">SimStack II documentation</div></a>
179
+ </div>
180
+ <div class="header-right">
181
+ <div class="theme-toggle-container theme-toggle-header">
182
+ <button class="theme-toggle" aria-label="Toggle Light / Dark / Auto color theme">
183
+ <svg class="theme-icon-when-auto-light"><use href="#svg-sun-with-moon"></use></svg>
184
+ <svg class="theme-icon-when-auto-dark"><use href="#svg-moon-with-sun"></use></svg>
185
+ <svg class="theme-icon-when-dark"><use href="#svg-moon"></use></svg>
186
+ <svg class="theme-icon-when-light"><use href="#svg-sun"></use></svg>
187
+ </button>
188
+ </div>
189
+ <label class="toc-overlay-icon toc-header-icon no-toc" for="__toc">
190
+ <span class="icon"><svg><use href="#svg-toc"></use></svg></span>
191
+ </label>
192
+ </div>
193
+ </header>
194
+ <aside class="sidebar-drawer">
195
+ <div class="sidebar-container">
196
+
197
+ <div class="sidebar-sticky"><a class="sidebar-brand" href="#">
198
+
199
+
200
+ </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
201
+ <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
202
+ <input type="hidden" name="check_keywords" value="yes">
203
+ <input type="hidden" name="area" value="default">
204
+ </form>
205
+ <div id="searchbox"></div><div class="sidebar-scroll"><div class="sidebar-tree">
206
+ <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
207
+ <ul>
208
+ <li class="toctree-l1"><a class="reference internal" href="overview.html">Overview</a></li>
209
+ <li class="toctree-l1"><a class="reference internal" href="workflows.html">Workflows</a></li>
210
+ <li class="toctree-l1"><a class="reference internal" href="ui_documentation.html">Graphical User Interface</a></li>
211
+ <li class="toctree-l1 has-children"><a class="reference internal" href="developer_guide.html">Developer Guide</a><input aria-label="Toggle navigation of Developer Guide" class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" role="switch" type="checkbox"/><label for="toctree-checkbox-1"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
212
+ <li class="toctree-l2"><a class="reference internal" href="data.html">Persisting and Visualizing Data</a></li>
213
+ <li class="toctree-l2"><a class="reference internal" href="datasets.html">Datasets</a></li>
214
+ <li class="toctree-l2"><a class="reference internal" href="lists.html">List Mixins</a></li>
215
+ <li class="toctree-l2"><a class="reference internal" href="array_lists.html">Array Lists</a></li>
216
+ <li class="toctree-l2"><a class="reference internal" href="tables.html">Tables</a></li>
217
+ <li class="toctree-l2"><a class="reference internal" href="files.html">File Management</a></li>
218
+ <li class="toctree-l2"><a class="reference internal" href="resource_config.html">Program Execution</a></li>
219
+ <li class="toctree-l2"><a class="reference internal" href="mass_runner.html">MassRunner</a></li>
220
+ <li class="toctree-l2"><a class="reference internal" href="fire_and_forget_runner.html">FireAndForgetRunner</a></li>
221
+ <li class="toctree-l2"><a class="reference internal" href="docker_nodes.html">Creating Docker Containers for SimStack Nodes</a></li>
222
+ <li class="toctree-l2"><a class="reference internal" href="testing_complex_nodes.html">Testing Complex Nodes</a></li>
223
+ <li class="toctree-l2"><a class="reference internal" href="database_migrations.html">Database Migrations</a></li>
224
+ <li class="toctree-l2"><a class="reference internal" href="ci_pipeline.html">CI Pipeline and Documentation Artifacts</a></li>
225
+ <li class="toctree-l2"><a class="reference internal" href="misc.html">Miscellaneous</a></li>
226
+ </ul>
227
+ </li>
228
+ <li class="toctree-l1"><a class="reference internal" href="installation.html">Simstack II Setup</a></li>
229
+ <li class="toctree-l1 has-children"><a class="reference internal" href="simstack/modules/modules.html">simstack</a><input aria-label="Toggle navigation of simstack" class="toctree-checkbox" id="toctree-checkbox-2" name="toctree-checkbox-2" role="switch" type="checkbox"/><label for="toctree-checkbox-2"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
230
+ <li class="toctree-l2 has-children"><a class="reference internal" href="simstack/modules/simstack.html">simstack package</a><input aria-label="Toggle navigation of simstack package" class="toctree-checkbox" id="toctree-checkbox-3" name="toctree-checkbox-3" role="switch" type="checkbox"/><label for="toctree-checkbox-3"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
231
+ <li class="toctree-l3 has-children"><a class="reference internal" href="simstack/modules/simstack.core.html">simstack.core package</a><input aria-label="Toggle navigation of simstack.core package" class="toctree-checkbox" id="toctree-checkbox-4" name="toctree-checkbox-4" role="switch" type="checkbox"/><label for="toctree-checkbox-4"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
232
+ <li class="toctree-l4"><a class="reference internal" href="simstack/modules/simstack.core.services.html">simstack.core.services package</a></li>
233
+ </ul>
234
+ </li>
235
+ <li class="toctree-l3"><a class="reference internal" href="simstack/modules/simstack.methods.html">simstack.methods package</a></li>
236
+ <li class="toctree-l3"><a class="reference internal" href="simstack/modules/simstack.models.html">simstack.models package</a></li>
237
+ <li class="toctree-l3"><a class="reference internal" href="simstack/modules/simstack.tables.html">simstack.tables package</a></li>
238
+ <li class="toctree-l3"><a class="reference internal" href="simstack/modules/simstack.util.html">simstack.util package</a></li>
239
+ </ul>
240
+ </li>
241
+ </ul>
242
+ </li>
243
+ </ul>
244
+
245
+ </div>
246
+ </div>
247
+
248
+ </div>
249
+
250
+ </div>
251
+ </aside>
252
+ <div class="main">
253
+ <div class="content">
254
+ <div class="article-container">
255
+ <a href="#" class="back-to-top muted-link">
256
+ <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24">
257
+ <path d="M13 20h-2V8l-5.5 5.5-1.42-1.42L12 4.16l7.92 7.92-1.42 1.42L13 8v12z"></path>
258
+ </svg>
259
+ <span>Back to top</span>
260
+ </a>
261
+ <div class="content-icon-container">
262
+ <div class="view-this-page">
263
+ <a class="muted-link" href="_sources/index.rst.txt" title="View this page">
264
+ <svg><use href="#svg-eye"></use></svg>
265
+ <span class="visually-hidden">View this page</span>
266
+ </a>
267
+ </div>
268
+ <div class="theme-toggle-container theme-toggle-content">
269
+ <button class="theme-toggle" aria-label="Toggle Light / Dark / Auto color theme">
270
+ <svg class="theme-icon-when-auto-light"><use href="#svg-sun-with-moon"></use></svg>
271
+ <svg class="theme-icon-when-auto-dark"><use href="#svg-moon-with-sun"></use></svg>
272
+ <svg class="theme-icon-when-dark"><use href="#svg-moon"></use></svg>
273
+ <svg class="theme-icon-when-light"><use href="#svg-sun"></use></svg>
274
+ </button>
275
+ </div>
276
+ <label class="toc-overlay-icon toc-content-icon no-toc" for="__toc">
277
+ <span class="icon"><svg><use href="#svg-toc"></use></svg></span>
278
+ </label>
279
+ </div>
280
+ <article role="main" id="furo-main-content">
281
+ <section id="simstack-ii-documentation">
282
+ <h1>SimStack II Documentation<a class="headerlink" href="#simstack-ii-documentation" title="Link to this heading">¶</a></h1>
283
+ <div class="toctree-wrapper compound">
284
+ <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
285
+ <ul>
286
+ <li class="toctree-l1"><a class="reference internal" href="overview.html">Overview</a><ul>
287
+ <li class="toctree-l2"><a class="reference internal" href="overview.html#simstack-ii">SimStack II</a><ul>
288
+ <li class="toctree-l3"><a class="reference internal" href="overview.html#key-features">Key features</a></li>
289
+ <li class="toctree-l3"><a class="reference internal" href="overview.html#roadmap">Roadmap</a></li>
290
+ </ul>
291
+ </li>
292
+ <li class="toctree-l2"><a class="reference internal" href="overview.html#motivation">Motivation</a><ul>
293
+ <li class="toctree-l3"><a class="reference internal" href="overview.html#bridging-developers-and-users">Bridging developers and users</a></li>
294
+ <li class="toctree-l3"><a class="reference internal" href="overview.html#design-goals">Design goals</a></li>
295
+ </ul>
296
+ </li>
297
+ <li class="toctree-l2"><a class="reference internal" href="overview.html#simstack-architecture">Simstack Architecture</a></li>
298
+ </ul>
299
+ </li>
300
+ <li class="toctree-l1"><a class="reference internal" href="workflows.html">Workflows</a><ul>
301
+ <li class="toctree-l2"><a class="reference internal" href="workflows.html#from-python-to-workflows">From Python to Workflows</a><ul>
302
+ <li class="toctree-l3"><a class="reference internal" href="workflows.html#return-types">Return Types</a></li>
303
+ <li class="toctree-l3"><a class="reference internal" href="workflows.html#the-noderunner-helper-class">The Noderunner Helper Class</a></li>
304
+ <li class="toctree-l3"><a class="reference internal" href="workflows.html#node-decorator-arguments">Node Decorator Arguments</a></li>
305
+ </ul>
306
+ </li>
307
+ <li class="toctree-l2"><a class="reference internal" href="workflows.html#node-execution">Node Execution</a><ul>
308
+ <li class="toctree-l3"><a class="reference internal" href="workflows.html#remote-execution">Remote Execution</a></li>
309
+ <li class="toctree-l3"><a class="reference internal" href="workflows.html#registering-models-and-nodes">Registering Models and Nodes</a></li>
310
+ <li class="toctree-l3"><a class="reference internal" href="workflows.html#most-common-errors-problems">Most Common Errors &amp; Problems</a></li>
311
+ </ul>
312
+ </li>
313
+ </ul>
314
+ </li>
315
+ <li class="toctree-l1"><a class="reference internal" href="ui_documentation.html">Graphical User Interface</a><ul>
316
+ <li class="toctree-l2"><a class="reference internal" href="ui_documentation.html#dashboard">Dashboard</a></li>
317
+ <li class="toctree-l2"><a class="reference internal" href="ui_documentation.html#viewing-task-details">Viewing Task Details</a></li>
318
+ <li class="toctree-l2"><a class="reference internal" href="ui_documentation.html#submitting-new-workflows">Submitting New Workflows</a><ul>
319
+ <li class="toctree-l3"><a class="reference internal" href="ui_documentation.html#node-selector">Node Selector</a></li>
320
+ <li class="toctree-l3"><a class="reference internal" href="ui_documentation.html#parameter-settings">Parameter Settings</a></li>
321
+ <li class="toctree-l3"><a class="reference internal" href="ui_documentation.html#model-input-section">Model Input Section</a></li>
322
+ </ul>
323
+ </li>
324
+ <li class="toctree-l2"><a class="reference internal" href="ui_documentation.html#health-dashboard">Health Dashboard</a></li>
325
+ <li class="toctree-l2"><a class="reference internal" href="ui_documentation.html#data-visualization">Data Visualization</a></li>
326
+ <li class="toctree-l2"><a class="reference internal" href="ui_documentation.html#data-tables">Data Tables</a></li>
327
+ <li class="toctree-l2"><a class="reference internal" href="ui_documentation.html#user-account-management">User Account Management</a></li>
328
+ <li class="toctree-l2"><a class="reference internal" href="ui_documentation.html#tips-for-effective-use">Tips for Effective Use</a><ul>
329
+ <li class="toctree-l3"><a class="reference internal" href="ui_documentation.html#exposing-workflows-in-the-gui">Exposing Workflows in the GUI</a></li>
330
+ </ul>
331
+ </li>
332
+ <li class="toctree-l2"><a class="reference internal" href="ui_documentation.html#concept">Concept</a></li>
333
+ <li class="toctree-l2"><a class="reference internal" href="ui_documentation.html#customizing-simstack-models">Customizing Simstack Models</a></li>
334
+ </ul>
335
+ </li>
336
+ <li class="toctree-l1"><a class="reference internal" href="developer_guide.html">Developer Guide</a><ul>
337
+ <li class="toctree-l2"><a class="reference internal" href="data.html">Persisting and Visualizing Data</a><ul>
338
+ <li class="toctree-l3"><a class="reference internal" href="data.html#model-definitions">Model Definitions</a></li>
339
+ <li class="toctree-l3"><a class="reference internal" href="data.html#advanced-tools">Advanced Tools</a></li>
340
+ </ul>
341
+ </li>
342
+ <li class="toctree-l2"><a class="reference internal" href="datasets.html">Datasets</a><ul>
343
+ <li class="toctree-l3"><a class="reference internal" href="datasets.html#dataset">DataSet</a></li>
344
+ <li class="toctree-l3"><a class="reference internal" href="datasets.html#metadata">Metadata</a></li>
345
+ <li class="toctree-l3"><a class="reference internal" href="datasets.html#datasetsection">DataSetSection</a></li>
346
+ <li class="toctree-l3"><a class="reference internal" href="datasets.html#datasetselection">DataSetSelection</a></li>
347
+ <li class="toctree-l3"><a class="reference internal" href="datasets.html#api-reference">API Reference</a></li>
348
+ </ul>
349
+ </li>
350
+ <li class="toctree-l2"><a class="reference internal" href="lists.html">List Mixins</a><ul>
351
+ <li class="toctree-l3"><a class="reference internal" href="lists.html#genericlistmixin">GenericListMixin</a></li>
352
+ <li class="toctree-l3"><a class="reference internal" href="lists.html#objectlistmixin">ObjectListMixin</a></li>
353
+ <li class="toctree-l3"><a class="reference internal" href="lists.html#concrete-implementations">Concrete Implementations</a></li>
354
+ </ul>
355
+ </li>
356
+ <li class="toctree-l2"><a class="reference internal" href="array_lists.html">Array Lists</a><ul>
357
+ <li class="toctree-l3"><a class="reference internal" href="array_lists.html#arraystorage">ArrayStorage</a></li>
358
+ <li class="toctree-l3"><a class="reference internal" href="array_lists.html#arraylist">ArrayList</a></li>
359
+ <li class="toctree-l3"><a class="reference internal" href="array_lists.html#api-reference">API Reference</a></li>
360
+ </ul>
361
+ </li>
362
+ <li class="toctree-l2"><a class="reference internal" href="tables.html">Tables</a><ul>
363
+ <li class="toctree-l3"><a class="reference internal" href="tables.html#simpletable">SimpleTable</a></li>
364
+ <li class="toctree-l3"><a class="reference internal" href="tables.html#api-reference">API Reference</a></li>
365
+ </ul>
366
+ </li>
367
+ <li class="toctree-l2"><a class="reference internal" href="files.html">File Management</a><ul>
368
+ <li class="toctree-l3"><a class="reference internal" href="files.html#filestack">FileStack</a></li>
369
+ <li class="toctree-l3"><a class="reference internal" href="files.html#filelist-and-filelistmodel">FileList and FileListModel</a></li>
370
+ <li class="toctree-l3"><a class="reference internal" href="files.html#api-reference">API Reference</a></li>
371
+ <li class="toctree-l3"><a class="reference internal" href="files.html#external-and-internal-files-and-resources">External and Internal Files and Resources</a></li>
372
+ <li class="toctree-l3"><a class="reference internal" href="files.html#input-data">Input Data</a></li>
373
+ <li class="toctree-l3"><a class="reference internal" href="files.html#output-data">Output Data</a></li>
374
+ </ul>
375
+ </li>
376
+ <li class="toctree-l2"><a class="reference internal" href="resource_config.html">Program Execution</a><ul>
377
+ <li class="toctree-l3"><a class="reference internal" href="resource_config.html#resourceconfig-class">ResourceConfig Class</a></li>
378
+ <li class="toctree-l3"><a class="reference internal" href="resource_config.html#config-toml-structure">Config.toml Structure</a></li>
379
+ </ul>
380
+ </li>
381
+ <li class="toctree-l2"><a class="reference internal" href="mass_runner.html">MassRunner</a><ul>
382
+ <li class="toctree-l3"><a class="reference internal" href="mass_runner.html#simstack.methods.mass_runner.MassRunner"><code class="docutils literal notranslate"><span class="pre">MassRunner</span></code></a></li>
383
+ <li class="toctree-l3"><a class="reference internal" href="mass_runner.html#key-features">Key Features</a></li>
384
+ <li class="toctree-l3"><a class="reference internal" href="mass_runner.html#usage">Usage</a></li>
385
+ <li class="toctree-l3"><a class="reference internal" href="mass_runner.html#detailed-flow-in-massrunner-tests">Detailed Flow in MassRunner Tests</a></li>
386
+ <li class="toctree-l3"><a class="reference internal" href="mass_runner.html#logging-and-metadata">Logging and Metadata</a></li>
387
+ </ul>
388
+ </li>
389
+ <li class="toctree-l2"><a class="reference internal" href="fire_and_forget_runner.html">FireAndForgetRunner</a><ul>
390
+ <li class="toctree-l3"><a class="reference internal" href="fire_and_forget_runner.html#simstack.methods.fire_and_forget_runner.FireAndForgetRunner"><code class="docutils literal notranslate"><span class="pre">FireAndForgetRunner</span></code></a></li>
391
+ <li class="toctree-l3"><a class="reference internal" href="fire_and_forget_runner.html#key-features">Key Features</a></li>
392
+ <li class="toctree-l3"><a class="reference internal" href="fire_and_forget_runner.html#usage">Usage</a></li>
393
+ <li class="toctree-l3"><a class="reference internal" href="fire_and_forget_runner.html#fireandforgetresult-model">FireAndForgetResult Model</a></li>
394
+ <li class="toctree-l3"><a class="reference internal" href="fire_and_forget_runner.html#comparison-with-massrunner">Comparison with MassRunner</a></li>
395
+ </ul>
396
+ </li>
397
+ <li class="toctree-l2"><a class="reference internal" href="docker_nodes.html">Creating Docker Containers for SimStack Nodes</a><ul>
398
+ <li class="toctree-l3"><a class="reference internal" href="docker_nodes.html#mechanism-overview">Mechanism Overview</a></li>
399
+ <li class="toctree-l3"><a class="reference internal" href="docker_nodes.html#example-psi4-node">Example: Psi4 Node</a></li>
400
+ <li class="toctree-l3"><a class="reference internal" href="docker_nodes.html#key-components-for-containerization">Key Components for Containerization</a></li>
401
+ </ul>
402
+ </li>
403
+ <li class="toctree-l2"><a class="reference internal" href="testing_complex_nodes.html">Testing Complex Nodes</a><ul>
404
+ <li class="toctree-l3"><a class="reference internal" href="testing_complex_nodes.html#overview">Overview</a></li>
405
+ <li class="toctree-l3"><a class="reference internal" href="testing_complex_nodes.html#test-generation-generate-test-py">Test Generation (<cite>generate_test.py</cite>)</a></li>
406
+ <li class="toctree-l3"><a class="reference internal" href="testing_complex_nodes.html#testing-with-patches-testing-test-generation-py">Testing with Patches (<cite>testing_test_generation.py</cite>)</a></li>
407
+ <li class="toctree-l3"><a class="reference internal" href="testing_complex_nodes.html#benefits">Benefits</a></li>
408
+ </ul>
409
+ </li>
410
+ <li class="toctree-l2"><a class="reference internal" href="database_migrations.html">Database Migrations</a><ul>
411
+ <li class="toctree-l3"><a class="reference internal" href="database_migrations.html#add-one">Add One</a></li>
412
+ <li class="toctree-l3"><a class="reference internal" href="database_migrations.html#example-1-add-field-resourcedefinition-is-enabled">Example 1: Add Field - ResourceDefinition.is_enabled</a></li>
413
+ <li class="toctree-l3"><a class="reference internal" href="database_migrations.html#example-2-edit-field-qminput-print-level-enum-rewrite">Example 2: Edit Field - QMInput.print_level Enum Rewrite</a></li>
414
+ <li class="toctree-l3"><a class="reference internal" href="database_migrations.html#example-3-delete-field-qminput-name">Example 3: Delete Field - QMInput.name</a></li>
415
+ <li class="toctree-l3"><a class="reference internal" href="database_migrations.html#example-4-edit-embedded-model-filelist-to-references">Example 4: Edit Embedded Model - FileList to References</a></li>
416
+ </ul>
417
+ </li>
418
+ <li class="toctree-l2"><a class="reference internal" href="ci_pipeline.html">CI Pipeline and Documentation Artifacts</a><ul>
419
+ <li class="toctree-l3"><a class="reference internal" href="ci_pipeline.html#where-the-html-documentation-lives">Where the HTML documentation lives</a></li>
420
+ <li class="toctree-l3"><a class="reference internal" href="ci_pipeline.html#how-the-ci-job-updates-docs">How the CI job updates docs</a></li>
421
+ <li class="toctree-l3"><a class="reference internal" href="ci_pipeline.html#how-other-projects-should-consume-docs">How other projects should consume docs</a></li>
422
+ </ul>
423
+ </li>
424
+ <li class="toctree-l2"><a class="reference internal" href="misc.html">Miscellaneous</a><ul>
425
+ <li class="toctree-l3"><a class="reference internal" href="misc.html#bugs">BUGS:</a></li>
426
+ <li class="toctree-l3"><a class="reference internal" href="misc.html#references">References</a></li>
427
+ <li class="toctree-l3"><a class="reference internal" href="misc.html#customizing-simstack-models">Customizing Simstack Models</a></li>
428
+ </ul>
429
+ </li>
430
+ </ul>
431
+ </li>
432
+ <li class="toctree-l1"><a class="reference internal" href="installation.html">Simstack II Setup</a><ul>
433
+ <li class="toctree-l2"><a class="reference internal" href="installation.html#ui-setup">UI Setup</a><ul>
434
+ <li class="toctree-l3"><a class="reference internal" href="installation.html#example-resources-configuration">Example resources configuration</a></li>
435
+ </ul>
436
+ </li>
437
+ <li class="toctree-l2"><a class="reference internal" href="installation.html#installation-of-runners">Installation of Runners</a><ul>
438
+ <li class="toctree-l3"><a class="reference internal" href="installation.html#prerequisites">Prerequisites</a></li>
439
+ <li class="toctree-l3"><a class="reference internal" href="installation.html#clone-the-repository">Clone the repository</a></li>
440
+ <li class="toctree-l3"><a class="reference internal" href="installation.html#host-specific-environment-notes">Host-specific environment notes</a></li>
441
+ <li class="toctree-l3"><a class="reference internal" href="installation.html#sync-dependencies">Sync dependencies</a></li>
442
+ <li class="toctree-l3"><a class="reference internal" href="installation.html#create-simstack-toml">Create <code class="docutils literal notranslate"><span class="pre">simstack.toml</span></code></a></li>
443
+ <li class="toctree-l3"><a class="reference internal" href="installation.html#initialize-the-system">Initialize the system</a></li>
444
+ <li class="toctree-l3"><a class="reference internal" href="installation.html#configure-git-identity-required">Configure Git identity (required)</a></li>
445
+ <li class="toctree-l3"><a class="reference internal" href="installation.html#start-the-runner">Start the runner</a></li>
446
+ </ul>
447
+ </li>
448
+ <li class="toctree-l2"><a class="reference internal" href="installation.html#ignore-after-this-line">Ignore after this line</a></li>
449
+ </ul>
450
+ </li>
451
+ <li class="toctree-l1"><a class="reference internal" href="simstack/modules/modules.html">simstack</a><ul>
452
+ <li class="toctree-l2"><a class="reference internal" href="simstack/modules/simstack.html">simstack package</a><ul>
453
+ <li class="toctree-l3"><a class="reference internal" href="simstack/modules/simstack.html#subpackages">Subpackages</a></li>
454
+ <li class="toctree-l3"><a class="reference internal" href="simstack/modules/simstack.html#module-simstack">Module contents</a></li>
455
+ </ul>
456
+ </li>
457
+ </ul>
458
+ </li>
459
+ </ul>
460
+ </div>
461
+ </section>
462
+ <section id="indices-and-tables">
463
+ <h1>Indices and tables<a class="headerlink" href="#indices-and-tables" title="Link to this heading">¶</a></h1>
464
+ <ul class="simple">
465
+ <li><p><a class="reference internal" href="genindex.html"><span class="std std-ref">Index</span></a></p></li>
466
+ <li><p><a class="reference internal" href="py-modindex.html"><span class="std std-ref">Module Index</span></a></p></li>
467
+ <li><p><a class="reference internal" href="search.html"><span class="std std-ref">Search Page</span></a></p></li>
468
+ </ul>
469
+ </section>
470
+
471
+ </article>
472
+ </div>
473
+ <footer>
474
+
475
+ <div class="related-pages">
476
+ <a class="next-page" href="overview.html">
477
+ <div class="page-info">
478
+ <div class="context">
479
+ <span>Next</span>
480
+ </div>
481
+ <div class="title">Overview</div>
482
+ </div>
483
+ <svg class="furo-related-icon"><use href="#svg-arrow-right"></use></svg>
484
+ </a>
485
+
486
+ </div>
487
+ <div class="bottom-of-page">
488
+ <div class="left-details">
489
+ <div class="copyright">
490
+ Copyright &#169; 2026, Wolfgang Wenzel
491
+ </div>
492
+ Made with <a href="https://www.sphinx-doc.org/">Sphinx</a> and <a class="muted-link" href="https://pradyunsg.me">@pradyunsg</a>'s
493
+
494
+ <a href="https://github.com/pradyunsg/furo">Furo</a>
495
+
496
+ </div>
497
+ <div class="right-details">
498
+
499
+ </div>
500
+ </div>
501
+
502
+ </footer>
503
+ </div>
504
+ <aside class="toc-drawer no-toc">
505
+
506
+
507
+
508
+ </aside>
509
+ </div>
510
+ </div><script src="_static/documentation_options.js?v=5929fcd5"></script>
511
+ <script src="_static/doctools.js?v=fd6eb6e6"></script>
512
+ <script src="_static/sphinx_highlight.js?v=6ffebe34"></script>
513
+ <script src="_static/scripts/furo.js?v=46bd48cc"></script>
514
+ <script data-docs-built-at="2026-07-17 10:50:10 UTC" src="_static/docs-build-badge.js?v=57cb9fc6"></script>
515
+ </body>
516
+ </html>