simstack 2.0.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (354) hide show
  1. simstack/__init__.py +0 -0
  2. simstack/_version.py +24 -0
  3. simstack/core/__init__.py +0 -0
  4. simstack/core/artifacts.py +406 -0
  5. simstack/core/asnyc_helper.py +14 -0
  6. simstack/core/config_file.py +60 -0
  7. simstack/core/context.py +283 -0
  8. simstack/core/definitions.py +22 -0
  9. simstack/core/engine.py +115 -0
  10. simstack/core/find_simstack_modules.py +41 -0
  11. simstack/core/hash.py +179 -0
  12. simstack/core/node.py +1137 -0
  13. simstack/core/node_claim.py +31 -0
  14. simstack/core/node_runner.py +362 -0
  15. simstack/core/process_results.py +102 -0
  16. simstack/core/recompute_artifacts.py +117 -0
  17. simstack/core/reset_db.py +12 -0
  18. simstack/core/resource_assignment.py +222 -0
  19. simstack/core/resources.py +90 -0
  20. simstack/core/route_table.py +24 -0
  21. simstack/core/run_docker.py +109 -0
  22. simstack/core/run_node.py +71 -0
  23. simstack/core/runner.py +169 -0
  24. simstack/core/services/__init__.py +11 -0
  25. simstack/core/services/base_service.py +191 -0
  26. simstack/core/services/file_transfer_service.py +117 -0
  27. simstack/core/services/git_restart_service.py +12 -0
  28. simstack/core/services/git_uv_update_service.py +105 -0
  29. simstack/core/services/node_execution_service.py +182 -0
  30. simstack/core/services/resource_branch_monitor_service.py +71 -0
  31. simstack/core/services/runner_cleanup_service.py +149 -0
  32. simstack/core/services/runner_manager.py +163 -0
  33. simstack/core/services/runner_status_service.py +10 -0
  34. simstack/core/services/slurm_status_service.py +67 -0
  35. simstack/core/services/stop_check_service.py +27 -0
  36. simstack/core/services/timeout_restart_service.py +26 -0
  37. simstack/core/simstack_result.py +39 -0
  38. simstack/core/submit_node.py +217 -0
  39. simstack/core/task_id.py +22 -0
  40. simstack/methods/__init__.py +0 -0
  41. simstack/methods/archive_files.py +292 -0
  42. simstack/methods/fire_and_forget_runner.py +113 -0
  43. simstack/methods/generate_test.py +125 -0
  44. simstack/methods/get_file.py +26 -0
  45. simstack/methods/mass_runner.py +154 -0
  46. simstack/methods/multiple_executor.py +307 -0
  47. simstack/methods/switch_git.py +16 -0
  48. simstack/methods/upload_helpers.py +81 -0
  49. simstack/models/__init__.py +74 -0
  50. simstack/models/array_list.py +21 -0
  51. simstack/models/array_storage.py +83 -0
  52. simstack/models/artifact_models.py +127 -0
  53. simstack/models/base_lists.py +51 -0
  54. simstack/models/base_types.py +209 -0
  55. simstack/models/charts_artifact.py +690 -0
  56. simstack/models/dataset.py +451 -0
  57. simstack/models/dataset_metadata.py +390 -0
  58. simstack/models/datasettuple.py +587 -0
  59. simstack/models/file_instance.py +150 -0
  60. simstack/models/file_list.py +45 -0
  61. simstack/models/files.py +424 -0
  62. simstack/models/fire_and_forget_result.py +19 -0
  63. simstack/models/images2d.py +113 -0
  64. simstack/models/log_entry_model.py +37 -0
  65. simstack/models/models.py +52 -0
  66. simstack/models/named_data_reference.py +36 -0
  67. simstack/models/node_registry.py +96 -0
  68. simstack/models/pandas_model.py +239 -0
  69. simstack/models/parameters.py +402 -0
  70. simstack/models/pickle_models.py +300 -0
  71. simstack/models/project.py +13 -0
  72. simstack/models/resource_assignment.py +170 -0
  73. simstack/models/resource_definition.py +125 -0
  74. simstack/models/runner_model.py +39 -0
  75. simstack/models/simple_table.py +79 -0
  76. simstack/models/simstack_model.py +97 -0
  77. simstack/models/slurm_info.py +17 -0
  78. simstack/models/table_artifact.py +87 -0
  79. simstack/models/tag.py +12 -0
  80. simstack/models/unused_test_file.py +5 -0
  81. simstack/simstack_marker.com +1 -0
  82. simstack/static/docs/.buildinfo +4 -0
  83. simstack/static/docs/_images/GUI Concept.webp +0 -0
  84. simstack/static/docs/_modules/index.html +434 -0
  85. simstack/static/docs/_modules/simstack/core/artifacts.html +743 -0
  86. simstack/static/docs/_modules/simstack/core/asnyc_helper.html +330 -0
  87. simstack/static/docs/_modules/simstack/core/config_file.html +379 -0
  88. simstack/static/docs/_modules/simstack/core/definitions.html +341 -0
  89. simstack/static/docs/_modules/simstack/core/engine.html +437 -0
  90. simstack/static/docs/_modules/simstack/core/find_simstack_modules.html +360 -0
  91. simstack/static/docs/_modules/simstack/core/hash.html +528 -0
  92. simstack/static/docs/_modules/simstack/core/node.html +1392 -0
  93. simstack/static/docs/_modules/simstack/core/node_claim.html +347 -0
  94. simstack/static/docs/_modules/simstack/core/node_runner.html +711 -0
  95. simstack/static/docs/_modules/simstack/core/process_results.html +418 -0
  96. simstack/static/docs/_modules/simstack/core/recompute_artifacts.html +433 -0
  97. simstack/static/docs/_modules/simstack/core/reset_db.html +328 -0
  98. simstack/static/docs/_modules/simstack/core/resource_assignment.html +553 -0
  99. simstack/static/docs/_modules/simstack/core/resources.html +424 -0
  100. simstack/static/docs/_modules/simstack/core/route_table.html +349 -0
  101. simstack/static/docs/_modules/simstack/core/run_docker.html +425 -0
  102. simstack/static/docs/_modules/simstack/core/run_node.html +390 -0
  103. simstack/static/docs/_modules/simstack/core/runner.html +491 -0
  104. simstack/static/docs/_modules/simstack/core/services/base_service.html +522 -0
  105. simstack/static/docs/_modules/simstack/core/services/file_transfer_service.html +436 -0
  106. simstack/static/docs/_modules/simstack/core/services/git_restart_service.html +331 -0
  107. simstack/static/docs/_modules/simstack/core/services/git_uv_update_service.html +427 -0
  108. simstack/static/docs/_modules/simstack/core/services/node_execution_service.html +507 -0
  109. simstack/static/docs/_modules/simstack/core/services/resource_branch_monitor_service.html +390 -0
  110. simstack/static/docs/_modules/simstack/core/services/runner_cleanup_service.html +468 -0
  111. simstack/static/docs/_modules/simstack/core/services/runner_manager.html +485 -0
  112. simstack/static/docs/_modules/simstack/core/services/runner_status_service.html +329 -0
  113. simstack/static/docs/_modules/simstack/core/services/slurm_status_service.html +386 -0
  114. simstack/static/docs/_modules/simstack/core/services/stop_check_service.html +346 -0
  115. simstack/static/docs/_modules/simstack/core/services/timeout_restart_service.html +345 -0
  116. simstack/static/docs/_modules/simstack/core/simstack_result.html +355 -0
  117. simstack/static/docs/_modules/simstack/core/submit_node.html +536 -0
  118. simstack/static/docs/_modules/simstack/core/task_id.html +344 -0
  119. simstack/static/docs/_modules/simstack/methods/archive_files.html +598 -0
  120. simstack/static/docs/_modules/simstack/methods/fire_and_forget_runner.html +432 -0
  121. simstack/static/docs/_modules/simstack/methods/generate_test.html +443 -0
  122. simstack/static/docs/_modules/simstack/methods/get_file.html +342 -0
  123. simstack/static/docs/_modules/simstack/methods/mass_runner.html +476 -0
  124. simstack/static/docs/_modules/simstack/methods/multiple_executor.html +674 -0
  125. simstack/static/docs/_modules/simstack/methods/switch_git.html +332 -0
  126. simstack/static/docs/_modules/simstack/methods/upload_helpers.html +403 -0
  127. simstack/static/docs/_modules/simstack/models/array_list.html +337 -0
  128. simstack/static/docs/_modules/simstack/models/array_storage.html +417 -0
  129. simstack/static/docs/_modules/simstack/models/base_lists.html +374 -0
  130. simstack/static/docs/_modules/simstack/models/base_types.html +588 -0
  131. simstack/static/docs/_modules/simstack/models/charts_artifact.html +1035 -0
  132. simstack/static/docs/_modules/simstack/models/dataset.html +866 -0
  133. simstack/static/docs/_modules/simstack/models/dataset_metadata.html +711 -0
  134. simstack/static/docs/_modules/simstack/models/datasettuple.html +1005 -0
  135. simstack/static/docs/_modules/simstack/models/file_instance.html +472 -0
  136. simstack/static/docs/_modules/simstack/models/file_list.html +367 -0
  137. simstack/static/docs/_modules/simstack/models/files.html +773 -0
  138. simstack/static/docs/_modules/simstack/models/fire_and_forget_result.html +335 -0
  139. simstack/static/docs/_modules/simstack/models/images2d.html +447 -0
  140. simstack/static/docs/_modules/simstack/models/log_entry_model.html +356 -0
  141. simstack/static/docs/_modules/simstack/models/models.html +374 -0
  142. simstack/static/docs/_modules/simstack/models/named_data_reference.html +355 -0
  143. simstack/static/docs/_modules/simstack/models/node_registry.html +415 -0
  144. simstack/static/docs/_modules/simstack/models/pandas_model.html +570 -0
  145. simstack/static/docs/_modules/simstack/models/parameters.html +739 -0
  146. simstack/static/docs/_modules/simstack/models/pickle_models.html +631 -0
  147. simstack/static/docs/_modules/simstack/models/project.html +329 -0
  148. simstack/static/docs/_modules/simstack/models/resource_assignment.html +501 -0
  149. simstack/static/docs/_modules/simstack/models/resource_definition.html +477 -0
  150. simstack/static/docs/_modules/simstack/models/runner_model.html +361 -0
  151. simstack/static/docs/_modules/simstack/models/simple_table.html +413 -0
  152. simstack/static/docs/_modules/simstack/models/simstack_model.html +416 -0
  153. simstack/static/docs/_modules/simstack/models/slurm_info.html +333 -0
  154. simstack/static/docs/_modules/simstack/models/table_artifact.html +406 -0
  155. simstack/static/docs/_modules/simstack/models/tag.html +328 -0
  156. simstack/static/docs/_modules/simstack/tables/model_table.html +519 -0
  157. simstack/static/docs/_modules/simstack/tables/node_children.html +538 -0
  158. simstack/static/docs/_modules/simstack/tables/node_table.html +854 -0
  159. simstack/static/docs/_modules/simstack/tables/table_builder.html +642 -0
  160. simstack/static/docs/_modules/simstack/util/async_zip_utils.html +337 -0
  161. simstack/static/docs/_modules/simstack/util/b64mixin.html +339 -0
  162. simstack/static/docs/_modules/simstack/util/cleaned_json_schema.html +336 -0
  163. simstack/static/docs/_modules/simstack/util/config_reader.html +498 -0
  164. simstack/static/docs/_modules/simstack/util/custom_model_dump.html +391 -0
  165. simstack/static/docs/_modules/simstack/util/database_information.html +488 -0
  166. simstack/static/docs/_modules/simstack/util/db.html +1392 -0
  167. simstack/static/docs/_modules/simstack/util/db_logger.html +448 -0
  168. simstack/static/docs/_modules/simstack/util/default_from_dict.html +376 -0
  169. simstack/static/docs/_modules/simstack/util/directory_iterator.html +553 -0
  170. simstack/static/docs/_modules/simstack/util/docstring_parser.html +526 -0
  171. simstack/static/docs/_modules/simstack/util/file_hashing.html +394 -0
  172. simstack/static/docs/_modules/simstack/util/file_transfer_client.html +791 -0
  173. simstack/static/docs/_modules/simstack/util/files.html +733 -0
  174. simstack/static/docs/_modules/simstack/util/find_python_files.html +349 -0
  175. simstack/static/docs/_modules/simstack/util/generate_ui_schema.html +396 -0
  176. simstack/static/docs/_modules/simstack/util/generic_list_mixin.html +487 -0
  177. simstack/static/docs/_modules/simstack/util/get_module_path.html +336 -0
  178. simstack/static/docs/_modules/simstack/util/git_pull.html +381 -0
  179. simstack/static/docs/_modules/simstack/util/git_repository_status.html +411 -0
  180. simstack/static/docs/_modules/simstack/util/import_module.html +377 -0
  181. simstack/static/docs/_modules/simstack/util/importer.html +637 -0
  182. simstack/static/docs/_modules/simstack/util/init_data_source.html +357 -0
  183. simstack/static/docs/_modules/simstack/util/make_graph.html +423 -0
  184. simstack/static/docs/_modules/simstack/util/make_table.html +1171 -0
  185. simstack/static/docs/_modules/simstack/util/mappings.html +378 -0
  186. simstack/static/docs/_modules/simstack/util/minimal_route_finder.html +388 -0
  187. simstack/static/docs/_modules/simstack/util/mock_db.html +472 -0
  188. simstack/static/docs/_modules/simstack/util/module_path_checker.html +354 -0
  189. simstack/static/docs/_modules/simstack/util/object_list_mixin.html +649 -0
  190. simstack/static/docs/_modules/simstack/util/path_manager.html +566 -0
  191. simstack/static/docs/_modules/simstack/util/project_root_finder.html +357 -0
  192. simstack/static/docs/_modules/simstack/util/queue_watcher.html +593 -0
  193. simstack/static/docs/_modules/simstack/util/resource_config.html +532 -0
  194. simstack/static/docs/_modules/simstack/util/route_finder.html +390 -0
  195. simstack/static/docs/_modules/simstack/util/runner_util.html +487 -0
  196. simstack/static/docs/_modules/simstack/util/runner_utils.html +468 -0
  197. simstack/static/docs/_modules/simstack/util/safe_code_executor.html +510 -0
  198. simstack/static/docs/_modules/simstack/util/sample_config.html +414 -0
  199. simstack/static/docs/_modules/simstack/util/sensitive_content_filter.html +364 -0
  200. simstack/static/docs/_modules/simstack/util/setup_logging.html +365 -0
  201. simstack/static/docs/_modules/simstack/util/submit_to_watchdog.html +425 -0
  202. simstack/static/docs/_modules/simstack/util/toml_reader.html +482 -0
  203. simstack/static/docs/_modules/simstack/util/transform_file_name.html +357 -0
  204. simstack/static/docs/_modules/simstack/util/ui_tools.html +541 -0
  205. simstack/static/docs/_sources/architecture.rst.txt +25 -0
  206. simstack/static/docs/_sources/array_lists.rst.txt +60 -0
  207. simstack/static/docs/_sources/ci_pipeline.rst.txt +34 -0
  208. simstack/static/docs/_sources/data.rst.txt +175 -0
  209. simstack/static/docs/_sources/database_migrations.rst.txt +310 -0
  210. simstack/static/docs/_sources/datasets.rst.txt +93 -0
  211. simstack/static/docs/_sources/developer_guide.rst.txt +25 -0
  212. simstack/static/docs/_sources/docker_nodes.rst.txt +149 -0
  213. simstack/static/docs/_sources/files.rst.txt +159 -0
  214. simstack/static/docs/_sources/fire_and_forget_runner.rst.txt +67 -0
  215. simstack/static/docs/_sources/index.rst.txt +25 -0
  216. simstack/static/docs/_sources/installation.rst.txt +213 -0
  217. simstack/static/docs/_sources/lists.rst.txt +111 -0
  218. simstack/static/docs/_sources/mass_runner.rst.txt +91 -0
  219. simstack/static/docs/_sources/misc.rst.txt +106 -0
  220. simstack/static/docs/_sources/overview.rst.txt +91 -0
  221. simstack/static/docs/_sources/recovery.rst.txt +38 -0
  222. simstack/static/docs/_sources/resource_config.rst.txt +141 -0
  223. simstack/static/docs/_sources/simstack/modules/modules.rst.txt +7 -0
  224. simstack/static/docs/_sources/simstack/modules/simstack.core.rst.txt +205 -0
  225. simstack/static/docs/_sources/simstack/modules/simstack.core.services.rst.txt +109 -0
  226. simstack/static/docs/_sources/simstack/modules/simstack.methods.rst.txt +77 -0
  227. simstack/static/docs/_sources/simstack/modules/simstack.models.rst.txt +261 -0
  228. simstack/static/docs/_sources/simstack/modules/simstack.rst.txt +22 -0
  229. simstack/static/docs/_sources/simstack/modules/simstack.tables.rst.txt +45 -0
  230. simstack/static/docs/_sources/simstack/modules/simstack.util.rst.txt +381 -0
  231. simstack/static/docs/_sources/submit.rst.txt +141 -0
  232. simstack/static/docs/_sources/tables.rst.txt +50 -0
  233. simstack/static/docs/_sources/testing_complex_nodes.rst.txt +92 -0
  234. simstack/static/docs/_sources/ui_documentation.rst.txt +272 -0
  235. simstack/static/docs/_sources/workflows.rst.txt +446 -0
  236. simstack/static/docs/_static/base-stemmer.js +476 -0
  237. simstack/static/docs/_static/basic.css +906 -0
  238. simstack/static/docs/_static/cobalt2-theme.css +1 -0
  239. simstack/static/docs/_static/debug.css +69 -0
  240. simstack/static/docs/_static/docs-build-badge.css +51 -0
  241. simstack/static/docs/_static/docs-build-badge.js +51 -0
  242. simstack/static/docs/_static/doctools.js +150 -0
  243. simstack/static/docs/_static/documentation_options.js +13 -0
  244. simstack/static/docs/_static/english-stemmer.js +1066 -0
  245. simstack/static/docs/_static/file.png +0 -0
  246. simstack/static/docs/_static/language_data.js +13 -0
  247. simstack/static/docs/_static/minus.png +0 -0
  248. simstack/static/docs/_static/plus.png +0 -0
  249. simstack/static/docs/_static/pygments.css +250 -0
  250. simstack/static/docs/_static/scripts/furo-extensions.js +0 -0
  251. simstack/static/docs/_static/scripts/furo.js +3 -0
  252. simstack/static/docs/_static/scripts/furo.js.LICENSE.txt +7 -0
  253. simstack/static/docs/_static/scripts/furo.js.map +1 -0
  254. simstack/static/docs/_static/searchtools.js +693 -0
  255. simstack/static/docs/_static/skeleton.css +296 -0
  256. simstack/static/docs/_static/sphinx_highlight.js +159 -0
  257. simstack/static/docs/_static/styles/furo-extensions.css +2 -0
  258. simstack/static/docs/_static/styles/furo-extensions.css.map +1 -0
  259. simstack/static/docs/_static/styles/furo.css +2 -0
  260. simstack/static/docs/_static/styles/furo.css.map +1 -0
  261. simstack/static/docs/architecture.html +340 -0
  262. simstack/static/docs/array_lists.html +678 -0
  263. simstack/static/docs/ci_pipeline.html +385 -0
  264. simstack/static/docs/data.html +545 -0
  265. simstack/static/docs/database_migrations.html +652 -0
  266. simstack/static/docs/datasets.html +1268 -0
  267. simstack/static/docs/developer_guide.html +359 -0
  268. simstack/static/docs/docker_nodes.html +503 -0
  269. simstack/static/docs/files.html +718 -0
  270. simstack/static/docs/fire_and_forget_runner.html +641 -0
  271. simstack/static/docs/genindex.html +6390 -0
  272. simstack/static/docs/index.html +516 -0
  273. simstack/static/docs/installation.html +553 -0
  274. simstack/static/docs/lists.html +478 -0
  275. simstack/static/docs/mass_runner.html +481 -0
  276. simstack/static/docs/misc.html +454 -0
  277. simstack/static/docs/objects.inv +0 -0
  278. simstack/static/docs/overview.html +469 -0
  279. simstack/static/docs/py-modindex.html +1111 -0
  280. simstack/static/docs/recovery.html +371 -0
  281. simstack/static/docs/resource_config.html +590 -0
  282. simstack/static/docs/search.html +327 -0
  283. simstack/static/docs/searchindex.js +1 -0
  284. simstack/static/docs/simstack/modules/modules.html +489 -0
  285. simstack/static/docs/simstack/modules/simstack.core.html +1883 -0
  286. simstack/static/docs/simstack/modules/simstack.core.services.html +698 -0
  287. simstack/static/docs/simstack/modules/simstack.html +3060 -0
  288. simstack/static/docs/simstack/modules/simstack.methods.html +1150 -0
  289. simstack/static/docs/simstack/modules/simstack.models.html +13113 -0
  290. simstack/static/docs/simstack/modules/simstack.tables.html +635 -0
  291. simstack/static/docs/simstack/modules/simstack.util.html +3320 -0
  292. simstack/static/docs/submit.html +487 -0
  293. simstack/static/docs/tables.html +539 -0
  294. simstack/static/docs/testing_complex_nodes.html +458 -0
  295. simstack/static/docs/ui_documentation.html +788 -0
  296. simstack/static/docs/workflows.html +766 -0
  297. simstack/tables/__init__.py +0 -0
  298. simstack/tables/model_table.py +191 -0
  299. simstack/tables/node_children.py +219 -0
  300. simstack/tables/node_table.py +517 -0
  301. simstack/tables/table_builder.py +314 -0
  302. simstack/util/__init__.py +0 -0
  303. simstack/util/async_zip_utils.py +18 -0
  304. simstack/util/b64mixin.py +23 -0
  305. simstack/util/cleaned_json_schema.py +20 -0
  306. simstack/util/config_reader.py +179 -0
  307. simstack/util/custom_model_dump.py +75 -0
  308. simstack/util/database_information.py +160 -0
  309. simstack/util/db.py +1013 -0
  310. simstack/util/db_logger.py +117 -0
  311. simstack/util/default_from_dict.py +57 -0
  312. simstack/util/directory_iterator.py +216 -0
  313. simstack/util/docstring_parser.py +186 -0
  314. simstack/util/file_hashing.py +72 -0
  315. simstack/util/file_transfer_client.py +427 -0
  316. simstack/util/files.py +396 -0
  317. simstack/util/find_python_files.py +33 -0
  318. simstack/util/generate_ui_schema.py +80 -0
  319. simstack/util/generic_list_mixin.py +120 -0
  320. simstack/util/geometry_utils.py +118 -0
  321. simstack/util/get_module_path.py +20 -0
  322. simstack/util/git_pull.py +65 -0
  323. simstack/util/git_repository_status.py +95 -0
  324. simstack/util/import_module.py +63 -0
  325. simstack/util/importer.py +312 -0
  326. simstack/util/init_data_source.py +41 -0
  327. simstack/util/make_graph.py +107 -0
  328. simstack/util/make_table.py +837 -0
  329. simstack/util/mappings.py +41 -0
  330. simstack/util/minimal_route_finder.py +72 -0
  331. simstack/util/mock_db.py +144 -0
  332. simstack/util/module_path_checker.py +38 -0
  333. simstack/util/object_list_mixin.py +282 -0
  334. simstack/util/path_manager.py +223 -0
  335. simstack/util/project_root_finder.py +41 -0
  336. simstack/util/queue_watcher.py +262 -0
  337. simstack/util/resource_config.py +198 -0
  338. simstack/util/route_finder.py +74 -0
  339. simstack/util/runner_util.py +166 -0
  340. simstack/util/runner_utils.py +143 -0
  341. simstack/util/safe_code_executor.py +194 -0
  342. simstack/util/sample_config.py +98 -0
  343. simstack/util/sensitive_content_filter.py +48 -0
  344. simstack/util/setup_logging.py +49 -0
  345. simstack/util/submit_to_watchdog.py +106 -0
  346. simstack/util/toml_reader.py +142 -0
  347. simstack/util/transform_file_name.py +41 -0
  348. simstack/util/ui_tools.py +213 -0
  349. simstack-2.0.1.dist-info/METADATA +454 -0
  350. simstack-2.0.1.dist-info/RECORD +354 -0
  351. simstack-2.0.1.dist-info/WHEEL +5 -0
  352. simstack-2.0.1.dist-info/entry_points.txt +12 -0
  353. simstack-2.0.1.dist-info/licenses/LICENSE +21 -0
  354. simstack-2.0.1.dist-info/top_level.txt +1 -0
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+ <h1>Source code for simstack.util.safe_code_executor</h1><div class="highlight"><pre>
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+ <span></span><span class="kn">import</span><span class="w"> </span><span class="nn">threading</span>
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+ <span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Dict</span>
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+
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+ <span class="kn">from</span><span class="w"> </span><span class="nn">simstack.core.artifacts</span><span class="w"> </span><span class="kn">import</span> <span class="n">ArtifactArguments</span>
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+
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+
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+ <div class="viewcode-block" id="safe_code_executor">
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+ <a class="viewcode-back" href="../../../simstack/modules/simstack.util.html#simstack.util.safe_code_executor.safe_code_executor">[docs]</a>
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+ <span class="k">def</span><span class="w"> </span><span class="nf">safe_code_executor</span><span class="p">(</span>
284
+ <span class="n">code_string</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">artifact_arguments</span><span class="p">:</span> <span class="n">ArtifactArguments</span><span class="p">,</span> <span class="n">timeout</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">30</span>
285
+ <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Dict</span><span class="p">:</span>
286
+ <span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
287
+ <span class="sd"> Safely executes Python code from a string with a controlled environment.</span>
288
+
289
+ <span class="sd"> Args:</span>
290
+ <span class="sd"> code_string (str): The Python code to execute</span>
291
+ <span class="sd"> artifact_arguments (ArtifactArguments): Artifact arguments to be used in the execution environment</span>
292
+ <span class="sd"> timeout (int, optional): Maximum execution time in seconds before timeout</span>
293
+
294
+ <span class="sd"> Returns:</span>
295
+ <span class="sd"> Dict: A dictionary containing:</span>
296
+ <span class="sd"> &#39;success&#39; (bool): Whether execution was successful</span>
297
+ <span class="sd"> &#39;result&#39;: The return value if successful</span>
298
+ <span class="sd"> &#39;error&#39;: Error message if unsuccessful</span>
299
+ <span class="sd"> &#39;error_type&#39;: Type of error if unsuccessful</span>
300
+
301
+ <span class="sd"> &quot;&quot;&quot;</span>
302
+ <span class="kn">import</span><span class="w"> </span><span class="nn">ast</span>
303
+ <span class="kn">import</span><span class="w"> </span><span class="nn">traceback</span>
304
+
305
+ <span class="c1"># Default result structure</span>
306
+ <span class="n">result</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;success&quot;</span><span class="p">:</span> <span class="kc">False</span><span class="p">,</span> <span class="s2">&quot;result&quot;</span><span class="p">:</span> <span class="kc">None</span><span class="p">,</span> <span class="s2">&quot;error&quot;</span><span class="p">:</span> <span class="kc">None</span><span class="p">,</span> <span class="s2">&quot;error_type&quot;</span><span class="p">:</span> <span class="kc">None</span><span class="p">}</span>
307
+
308
+ <span class="c1"># Verify code is not empty</span>
309
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">code_string</span> <span class="ow">or</span> <span class="ow">not</span> <span class="n">code_string</span><span class="o">.</span><span class="n">strip</span><span class="p">():</span>
310
+ <span class="n">result</span><span class="p">[</span><span class="s2">&quot;error&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;Empty code string provided&quot;</span>
311
+ <span class="n">result</span><span class="p">[</span><span class="s2">&quot;error_type&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;ValueError&quot;</span>
312
+ <span class="k">return</span> <span class="n">result</span>
313
+
314
+ <span class="c1"># Create a safe globals dictionary</span>
315
+ <span class="n">safe_globals</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;__builtins__&quot;</span><span class="p">:</span> <span class="p">{}}</span>
316
+
317
+ <span class="c1"># Add only whitelisted builtins that are considered safe</span>
318
+ <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="p">[</span>
319
+ <span class="s2">&quot;abs&quot;</span><span class="p">,</span>
320
+ <span class="s2">&quot;all&quot;</span><span class="p">,</span>
321
+ <span class="s2">&quot;any&quot;</span><span class="p">,</span>
322
+ <span class="s2">&quot;bool&quot;</span><span class="p">,</span>
323
+ <span class="s2">&quot;dict&quot;</span><span class="p">,</span>
324
+ <span class="s2">&quot;enumerate&quot;</span><span class="p">,</span>
325
+ <span class="s2">&quot;filter&quot;</span><span class="p">,</span>
326
+ <span class="s2">&quot;float&quot;</span><span class="p">,</span>
327
+ <span class="s2">&quot;frozenset&quot;</span><span class="p">,</span>
328
+ <span class="s2">&quot;int&quot;</span><span class="p">,</span>
329
+ <span class="s2">&quot;isinstance&quot;</span><span class="p">,</span>
330
+ <span class="s2">&quot;issubclass&quot;</span><span class="p">,</span>
331
+ <span class="s2">&quot;len&quot;</span><span class="p">,</span>
332
+ <span class="s2">&quot;list&quot;</span><span class="p">,</span>
333
+ <span class="s2">&quot;map&quot;</span><span class="p">,</span>
334
+ <span class="s2">&quot;max&quot;</span><span class="p">,</span>
335
+ <span class="s2">&quot;min&quot;</span><span class="p">,</span>
336
+ <span class="s2">&quot;print&quot;</span><span class="p">,</span>
337
+ <span class="s2">&quot;range&quot;</span><span class="p">,</span>
338
+ <span class="s2">&quot;reversed&quot;</span><span class="p">,</span>
339
+ <span class="s2">&quot;round&quot;</span><span class="p">,</span>
340
+ <span class="s2">&quot;set&quot;</span><span class="p">,</span>
341
+ <span class="s2">&quot;slice&quot;</span><span class="p">,</span>
342
+ <span class="s2">&quot;sorted&quot;</span><span class="p">,</span>
343
+ <span class="s2">&quot;str&quot;</span><span class="p">,</span>
344
+ <span class="s2">&quot;sum&quot;</span><span class="p">,</span>
345
+ <span class="s2">&quot;tuple&quot;</span><span class="p">,</span>
346
+ <span class="s2">&quot;zip&quot;</span><span class="p">,</span>
347
+ <span class="p">]:</span>
348
+ <span class="n">safe_globals</span><span class="p">[</span><span class="s2">&quot;__builtins__&quot;</span><span class="p">][</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">__builtins__</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
349
+
350
+ <span class="c1"># Add artifact models to safe globals</span>
351
+ <span class="kn">from</span><span class="w"> </span><span class="nn">simstack.models.charts_artifact</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
352
+ <span class="n">ChartArtifactModel</span><span class="p">,</span>
353
+ <span class="n">AGLineSeriesConfig</span><span class="p">,</span>
354
+ <span class="n">AGChartAxisConfig</span><span class="p">,</span>
355
+ <span class="n">AGChartTitleConfig</span><span class="p">,</span>
356
+ <span class="n">AGChartLegendConfig</span><span class="p">,</span>
357
+ <span class="p">)</span>
358
+ <span class="kn">from</span><span class="w"> </span><span class="nn">simstack.models.table_artifact</span><span class="w"> </span><span class="kn">import</span> <span class="n">TableArtifactModel</span>
359
+ <span class="kn">from</span><span class="w"> </span><span class="nn">examples.science.electronic_structure.spectra.plot_spectra</span><span class="w"> </span><span class="kn">import</span> <span class="p">(</span>
360
+ <span class="n">make_multi_line_chart</span><span class="p">,</span>
361
+ <span class="p">)</span>
362
+ <span class="kn">from</span><span class="w"> </span><span class="nn">simstack.models</span><span class="w"> </span><span class="kn">import</span> <span class="n">ArtifactModel</span>
363
+
364
+ <span class="n">safe_globals</span><span class="o">.</span><span class="n">update</span><span class="p">(</span>
365
+ <span class="p">{</span>
366
+ <span class="s2">&quot;ChartArtifactModel&quot;</span><span class="p">:</span> <span class="n">ChartArtifactModel</span><span class="p">,</span>
367
+ <span class="s2">&quot;TableArtifactModel&quot;</span><span class="p">:</span> <span class="n">TableArtifactModel</span><span class="p">,</span>
368
+ <span class="s2">&quot;AGLineSeriesConfig&quot;</span><span class="p">:</span> <span class="n">AGLineSeriesConfig</span><span class="p">,</span>
369
+ <span class="s2">&quot;AGChartAxisConfig&quot;</span><span class="p">:</span> <span class="n">AGChartAxisConfig</span><span class="p">,</span>
370
+ <span class="s2">&quot;AGChartTitleConfig&quot;</span><span class="p">:</span> <span class="n">AGChartTitleConfig</span><span class="p">,</span>
371
+ <span class="s2">&quot;AGChartLegendConfig&quot;</span><span class="p">:</span> <span class="n">AGChartLegendConfig</span><span class="p">,</span>
372
+ <span class="s2">&quot;make_multi_line_chart&quot;</span><span class="p">:</span> <span class="n">make_multi_line_chart</span><span class="p">,</span>
373
+ <span class="s2">&quot;ArtifactModel&quot;</span><span class="p">:</span> <span class="n">ArtifactModel</span><span class="p">,</span>
374
+ <span class="s2">&quot;ArtifactArguments&quot;</span><span class="p">:</span> <span class="n">ArtifactArguments</span><span class="p">,</span>
375
+ <span class="p">}</span>
376
+ <span class="p">)</span>
377
+
378
+ <span class="c1"># Add artifact_arguments attributes to safe globals</span>
379
+ <span class="c1"># Extract all attributes from the artifact_arguments instance</span>
380
+ <span class="k">for</span> <span class="n">attr_name</span> <span class="ow">in</span> <span class="nb">dir</span><span class="p">(</span><span class="n">artifact_arguments</span><span class="p">):</span>
381
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">attr_name</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;_&quot;</span><span class="p">):</span> <span class="c1"># Skip private/magic methods</span>
382
+ <span class="n">attr_value</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">artifact_arguments</span><span class="p">,</span> <span class="n">attr_name</span><span class="p">)</span>
383
+ <span class="k">if</span> <span class="ow">not</span> <span class="nb">callable</span><span class="p">(</span><span class="n">attr_value</span><span class="p">):</span> <span class="c1"># Skip methods, only include data attributes</span>
384
+ <span class="n">safe_globals</span><span class="p">[</span><span class="n">attr_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">attr_value</span>
385
+
386
+ <span class="c1"># Also add the full artifact_arguments object itself for backward compatibility</span>
387
+ <span class="n">safe_globals</span><span class="p">[</span><span class="s2">&quot;arg&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">artifact_arguments</span>
388
+
389
+ <span class="c1"># Verify code is syntactically correct</span>
390
+ <span class="k">try</span><span class="p">:</span>
391
+ <span class="n">ast</span><span class="o">.</span><span class="n">parse</span><span class="p">(</span><span class="n">code_string</span><span class="p">)</span>
392
+ <span class="k">except</span> <span class="ne">SyntaxError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
393
+ <span class="n">result</span><span class="p">[</span><span class="s2">&quot;error&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
394
+ <span class="n">result</span><span class="p">[</span><span class="s2">&quot;error_type&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;SyntaxError&quot;</span>
395
+ <span class="k">return</span> <span class="n">result</span>
396
+
397
+ <span class="c1"># Cross-platform timeout implementation using threading</span>
398
+ <span class="n">execution_result</span> <span class="o">=</span> <span class="p">{</span>
399
+ <span class="s2">&quot;completed&quot;</span><span class="p">:</span> <span class="kc">False</span><span class="p">,</span>
400
+ <span class="s2">&quot;exception&quot;</span><span class="p">:</span> <span class="kc">None</span><span class="p">,</span>
401
+ <span class="s2">&quot;local_vars&quot;</span><span class="p">:</span> <span class="p">{},</span>
402
+ <span class="s2">&quot;function_result&quot;</span><span class="p">:</span> <span class="kc">None</span><span class="p">,</span>
403
+ <span class="p">}</span>
404
+
405
+ <span class="k">def</span><span class="w"> </span><span class="nf">execute_code</span><span class="p">():</span>
406
+ <span class="k">try</span><span class="p">:</span>
407
+ <span class="n">local_vars</span> <span class="o">=</span> <span class="p">{}</span>
408
+ <span class="n">exec</span><span class="p">(</span><span class="n">code_string</span><span class="p">,</span> <span class="n">safe_globals</span><span class="p">,</span> <span class="n">local_vars</span><span class="p">)</span>
409
+ <span class="n">execution_result</span><span class="p">[</span><span class="s2">&quot;local_vars&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">local_vars</span>
410
+
411
+ <span class="c1"># Look for a function in local_vars and call it with artifact_arguments</span>
412
+ <span class="n">function_result</span> <span class="o">=</span> <span class="kc">None</span>
413
+ <span class="k">for</span> <span class="n">var_name</span><span class="p">,</span> <span class="n">var_value</span> <span class="ow">in</span> <span class="n">local_vars</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
414
+ <span class="k">if</span> <span class="nb">callable</span><span class="p">(</span><span class="n">var_value</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">var_name</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;_&quot;</span><span class="p">):</span>
415
+ <span class="c1"># Found a function, call it with artifact_arguments</span>
416
+ <span class="k">try</span><span class="p">:</span>
417
+ <span class="n">function_result</span> <span class="o">=</span> <span class="n">var_value</span><span class="p">(</span><span class="n">artifact_arguments</span><span class="p">)</span>
418
+ <span class="n">execution_result</span><span class="p">[</span><span class="s2">&quot;function_result&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">function_result</span>
419
+ <span class="k">break</span>
420
+ <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">func_e</span><span class="p">:</span>
421
+ <span class="n">execution_result</span><span class="p">[</span><span class="s2">&quot;exception&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">func_e</span>
422
+ <span class="n">execution_result</span><span class="p">[</span><span class="s2">&quot;completed&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
423
+ <span class="k">return</span>
424
+
425
+ <span class="n">execution_result</span><span class="p">[</span><span class="s2">&quot;completed&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
426
+ <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
427
+ <span class="n">execution_result</span><span class="p">[</span><span class="s2">&quot;exception&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">e</span>
428
+ <span class="n">execution_result</span><span class="p">[</span><span class="s2">&quot;completed&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
429
+
430
+ <span class="k">try</span><span class="p">:</span>
431
+ <span class="c1"># Start execution in a separate thread</span>
432
+ <span class="n">thread</span> <span class="o">=</span> <span class="n">threading</span><span class="o">.</span><span class="n">Thread</span><span class="p">(</span><span class="n">target</span><span class="o">=</span><span class="n">execute_code</span><span class="p">,</span> <span class="n">daemon</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
433
+ <span class="n">thread</span><span class="o">.</span><span class="n">start</span><span class="p">()</span>
434
+ <span class="n">thread</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">timeout</span><span class="o">=</span><span class="n">timeout</span><span class="p">)</span>
435
+
436
+ <span class="k">if</span> <span class="n">thread</span><span class="o">.</span><span class="n">is_alive</span><span class="p">():</span>
437
+ <span class="c1"># Timeout occurred</span>
438
+ <span class="n">result</span><span class="p">[</span><span class="s2">&quot;error&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;Code execution timed out after </span><span class="si">{</span><span class="n">timeout</span><span class="si">}</span><span class="s2"> seconds&quot;</span>
439
+ <span class="n">result</span><span class="p">[</span><span class="s2">&quot;error_type&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;TimeoutError&quot;</span>
440
+ <span class="k">return</span> <span class="n">result</span>
441
+
442
+ <span class="k">if</span> <span class="n">execution_result</span><span class="p">[</span><span class="s2">&quot;exception&quot;</span><span class="p">]:</span>
443
+ <span class="c1"># Exception occurred during execution</span>
444
+ <span class="n">e</span> <span class="o">=</span> <span class="n">execution_result</span><span class="p">[</span><span class="s2">&quot;exception&quot;</span><span class="p">]</span>
445
+ <span class="n">result</span><span class="p">[</span><span class="s2">&quot;error&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
446
+ <span class="n">result</span><span class="p">[</span><span class="s2">&quot;error_type&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">e</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span>
447
+ <span class="n">result</span><span class="p">[</span><span class="s2">&quot;traceback&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">traceback</span><span class="o">.</span><span class="n">format_exc</span><span class="p">()</span>
448
+ <span class="k">return</span> <span class="n">result</span>
449
+
450
+ <span class="c1"># Successful execution</span>
451
+ <span class="c1"># Return the function result if available, otherwise return local vars</span>
452
+ <span class="k">if</span> <span class="n">execution_result</span><span class="p">[</span><span class="s2">&quot;function_result&quot;</span><span class="p">]</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
453
+ <span class="n">result</span><span class="p">[</span><span class="s2">&quot;result&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">execution_result</span><span class="p">[</span><span class="s2">&quot;function_result&quot;</span><span class="p">]</span>
454
+ <span class="k">else</span><span class="p">:</span>
455
+ <span class="n">local_vars</span> <span class="o">=</span> <span class="n">execution_result</span><span class="p">[</span><span class="s2">&quot;local_vars&quot;</span><span class="p">]</span>
456
+ <span class="k">if</span> <span class="s2">&quot;result&quot;</span> <span class="ow">in</span> <span class="n">local_vars</span><span class="p">:</span>
457
+ <span class="n">result</span><span class="p">[</span><span class="s2">&quot;result&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">local_vars</span><span class="p">[</span><span class="s2">&quot;result&quot;</span><span class="p">]</span>
458
+ <span class="k">else</span><span class="p">:</span>
459
+ <span class="n">result</span><span class="p">[</span><span class="s2">&quot;result&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
460
+ <span class="n">k</span><span class="p">:</span> <span class="n">v</span> <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">local_vars</span><span class="o">.</span><span class="n">items</span><span class="p">()</span> <span class="k">if</span> <span class="ow">not</span> <span class="n">k</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;_&quot;</span><span class="p">)</span>
461
+ <span class="p">}</span>
462
+
463
+ <span class="n">result</span><span class="p">[</span><span class="s2">&quot;success&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
464
+
465
+ <span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
466
+ <span class="n">result</span><span class="p">[</span><span class="s2">&quot;error&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
467
+ <span class="n">result</span><span class="p">[</span><span class="s2">&quot;error_type&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">e</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span>
468
+ <span class="n">result</span><span class="p">[</span><span class="s2">&quot;traceback&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">traceback</span><span class="o">.</span><span class="n">format_exc</span><span class="p">()</span>
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+
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+ <span class="k">return</span> <span class="n">result</span></div>
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+
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+ </pre></div>
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