simstack 2.0.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (354) hide show
  1. simstack/__init__.py +0 -0
  2. simstack/_version.py +24 -0
  3. simstack/core/__init__.py +0 -0
  4. simstack/core/artifacts.py +406 -0
  5. simstack/core/asnyc_helper.py +14 -0
  6. simstack/core/config_file.py +60 -0
  7. simstack/core/context.py +283 -0
  8. simstack/core/definitions.py +22 -0
  9. simstack/core/engine.py +115 -0
  10. simstack/core/find_simstack_modules.py +41 -0
  11. simstack/core/hash.py +179 -0
  12. simstack/core/node.py +1137 -0
  13. simstack/core/node_claim.py +31 -0
  14. simstack/core/node_runner.py +362 -0
  15. simstack/core/process_results.py +102 -0
  16. simstack/core/recompute_artifacts.py +117 -0
  17. simstack/core/reset_db.py +12 -0
  18. simstack/core/resource_assignment.py +222 -0
  19. simstack/core/resources.py +90 -0
  20. simstack/core/route_table.py +24 -0
  21. simstack/core/run_docker.py +109 -0
  22. simstack/core/run_node.py +71 -0
  23. simstack/core/runner.py +169 -0
  24. simstack/core/services/__init__.py +11 -0
  25. simstack/core/services/base_service.py +191 -0
  26. simstack/core/services/file_transfer_service.py +117 -0
  27. simstack/core/services/git_restart_service.py +12 -0
  28. simstack/core/services/git_uv_update_service.py +105 -0
  29. simstack/core/services/node_execution_service.py +182 -0
  30. simstack/core/services/resource_branch_monitor_service.py +71 -0
  31. simstack/core/services/runner_cleanup_service.py +149 -0
  32. simstack/core/services/runner_manager.py +163 -0
  33. simstack/core/services/runner_status_service.py +10 -0
  34. simstack/core/services/slurm_status_service.py +67 -0
  35. simstack/core/services/stop_check_service.py +27 -0
  36. simstack/core/services/timeout_restart_service.py +26 -0
  37. simstack/core/simstack_result.py +39 -0
  38. simstack/core/submit_node.py +217 -0
  39. simstack/core/task_id.py +22 -0
  40. simstack/methods/__init__.py +0 -0
  41. simstack/methods/archive_files.py +292 -0
  42. simstack/methods/fire_and_forget_runner.py +113 -0
  43. simstack/methods/generate_test.py +125 -0
  44. simstack/methods/get_file.py +26 -0
  45. simstack/methods/mass_runner.py +154 -0
  46. simstack/methods/multiple_executor.py +307 -0
  47. simstack/methods/switch_git.py +16 -0
  48. simstack/methods/upload_helpers.py +81 -0
  49. simstack/models/__init__.py +74 -0
  50. simstack/models/array_list.py +21 -0
  51. simstack/models/array_storage.py +83 -0
  52. simstack/models/artifact_models.py +127 -0
  53. simstack/models/base_lists.py +51 -0
  54. simstack/models/base_types.py +209 -0
  55. simstack/models/charts_artifact.py +690 -0
  56. simstack/models/dataset.py +451 -0
  57. simstack/models/dataset_metadata.py +390 -0
  58. simstack/models/datasettuple.py +587 -0
  59. simstack/models/file_instance.py +150 -0
  60. simstack/models/file_list.py +45 -0
  61. simstack/models/files.py +424 -0
  62. simstack/models/fire_and_forget_result.py +19 -0
  63. simstack/models/images2d.py +113 -0
  64. simstack/models/log_entry_model.py +37 -0
  65. simstack/models/models.py +52 -0
  66. simstack/models/named_data_reference.py +36 -0
  67. simstack/models/node_registry.py +96 -0
  68. simstack/models/pandas_model.py +239 -0
  69. simstack/models/parameters.py +402 -0
  70. simstack/models/pickle_models.py +300 -0
  71. simstack/models/project.py +13 -0
  72. simstack/models/resource_assignment.py +170 -0
  73. simstack/models/resource_definition.py +125 -0
  74. simstack/models/runner_model.py +39 -0
  75. simstack/models/simple_table.py +79 -0
  76. simstack/models/simstack_model.py +97 -0
  77. simstack/models/slurm_info.py +17 -0
  78. simstack/models/table_artifact.py +87 -0
  79. simstack/models/tag.py +12 -0
  80. simstack/models/unused_test_file.py +5 -0
  81. simstack/simstack_marker.com +1 -0
  82. simstack/static/docs/.buildinfo +4 -0
  83. simstack/static/docs/_images/GUI Concept.webp +0 -0
  84. simstack/static/docs/_modules/index.html +434 -0
  85. simstack/static/docs/_modules/simstack/core/artifacts.html +743 -0
  86. simstack/static/docs/_modules/simstack/core/asnyc_helper.html +330 -0
  87. simstack/static/docs/_modules/simstack/core/config_file.html +379 -0
  88. simstack/static/docs/_modules/simstack/core/definitions.html +341 -0
  89. simstack/static/docs/_modules/simstack/core/engine.html +437 -0
  90. simstack/static/docs/_modules/simstack/core/find_simstack_modules.html +360 -0
  91. simstack/static/docs/_modules/simstack/core/hash.html +528 -0
  92. simstack/static/docs/_modules/simstack/core/node.html +1392 -0
  93. simstack/static/docs/_modules/simstack/core/node_claim.html +347 -0
  94. simstack/static/docs/_modules/simstack/core/node_runner.html +711 -0
  95. simstack/static/docs/_modules/simstack/core/process_results.html +418 -0
  96. simstack/static/docs/_modules/simstack/core/recompute_artifacts.html +433 -0
  97. simstack/static/docs/_modules/simstack/core/reset_db.html +328 -0
  98. simstack/static/docs/_modules/simstack/core/resource_assignment.html +553 -0
  99. simstack/static/docs/_modules/simstack/core/resources.html +424 -0
  100. simstack/static/docs/_modules/simstack/core/route_table.html +349 -0
  101. simstack/static/docs/_modules/simstack/core/run_docker.html +425 -0
  102. simstack/static/docs/_modules/simstack/core/run_node.html +390 -0
  103. simstack/static/docs/_modules/simstack/core/runner.html +491 -0
  104. simstack/static/docs/_modules/simstack/core/services/base_service.html +522 -0
  105. simstack/static/docs/_modules/simstack/core/services/file_transfer_service.html +436 -0
  106. simstack/static/docs/_modules/simstack/core/services/git_restart_service.html +331 -0
  107. simstack/static/docs/_modules/simstack/core/services/git_uv_update_service.html +427 -0
  108. simstack/static/docs/_modules/simstack/core/services/node_execution_service.html +507 -0
  109. simstack/static/docs/_modules/simstack/core/services/resource_branch_monitor_service.html +390 -0
  110. simstack/static/docs/_modules/simstack/core/services/runner_cleanup_service.html +468 -0
  111. simstack/static/docs/_modules/simstack/core/services/runner_manager.html +485 -0
  112. simstack/static/docs/_modules/simstack/core/services/runner_status_service.html +329 -0
  113. simstack/static/docs/_modules/simstack/core/services/slurm_status_service.html +386 -0
  114. simstack/static/docs/_modules/simstack/core/services/stop_check_service.html +346 -0
  115. simstack/static/docs/_modules/simstack/core/services/timeout_restart_service.html +345 -0
  116. simstack/static/docs/_modules/simstack/core/simstack_result.html +355 -0
  117. simstack/static/docs/_modules/simstack/core/submit_node.html +536 -0
  118. simstack/static/docs/_modules/simstack/core/task_id.html +344 -0
  119. simstack/static/docs/_modules/simstack/methods/archive_files.html +598 -0
  120. simstack/static/docs/_modules/simstack/methods/fire_and_forget_runner.html +432 -0
  121. simstack/static/docs/_modules/simstack/methods/generate_test.html +443 -0
  122. simstack/static/docs/_modules/simstack/methods/get_file.html +342 -0
  123. simstack/static/docs/_modules/simstack/methods/mass_runner.html +476 -0
  124. simstack/static/docs/_modules/simstack/methods/multiple_executor.html +674 -0
  125. simstack/static/docs/_modules/simstack/methods/switch_git.html +332 -0
  126. simstack/static/docs/_modules/simstack/methods/upload_helpers.html +403 -0
  127. simstack/static/docs/_modules/simstack/models/array_list.html +337 -0
  128. simstack/static/docs/_modules/simstack/models/array_storage.html +417 -0
  129. simstack/static/docs/_modules/simstack/models/base_lists.html +374 -0
  130. simstack/static/docs/_modules/simstack/models/base_types.html +588 -0
  131. simstack/static/docs/_modules/simstack/models/charts_artifact.html +1035 -0
  132. simstack/static/docs/_modules/simstack/models/dataset.html +866 -0
  133. simstack/static/docs/_modules/simstack/models/dataset_metadata.html +711 -0
  134. simstack/static/docs/_modules/simstack/models/datasettuple.html +1005 -0
  135. simstack/static/docs/_modules/simstack/models/file_instance.html +472 -0
  136. simstack/static/docs/_modules/simstack/models/file_list.html +367 -0
  137. simstack/static/docs/_modules/simstack/models/files.html +773 -0
  138. simstack/static/docs/_modules/simstack/models/fire_and_forget_result.html +335 -0
  139. simstack/static/docs/_modules/simstack/models/images2d.html +447 -0
  140. simstack/static/docs/_modules/simstack/models/log_entry_model.html +356 -0
  141. simstack/static/docs/_modules/simstack/models/models.html +374 -0
  142. simstack/static/docs/_modules/simstack/models/named_data_reference.html +355 -0
  143. simstack/static/docs/_modules/simstack/models/node_registry.html +415 -0
  144. simstack/static/docs/_modules/simstack/models/pandas_model.html +570 -0
  145. simstack/static/docs/_modules/simstack/models/parameters.html +739 -0
  146. simstack/static/docs/_modules/simstack/models/pickle_models.html +631 -0
  147. simstack/static/docs/_modules/simstack/models/project.html +329 -0
  148. simstack/static/docs/_modules/simstack/models/resource_assignment.html +501 -0
  149. simstack/static/docs/_modules/simstack/models/resource_definition.html +477 -0
  150. simstack/static/docs/_modules/simstack/models/runner_model.html +361 -0
  151. simstack/static/docs/_modules/simstack/models/simple_table.html +413 -0
  152. simstack/static/docs/_modules/simstack/models/simstack_model.html +416 -0
  153. simstack/static/docs/_modules/simstack/models/slurm_info.html +333 -0
  154. simstack/static/docs/_modules/simstack/models/table_artifact.html +406 -0
  155. simstack/static/docs/_modules/simstack/models/tag.html +328 -0
  156. simstack/static/docs/_modules/simstack/tables/model_table.html +519 -0
  157. simstack/static/docs/_modules/simstack/tables/node_children.html +538 -0
  158. simstack/static/docs/_modules/simstack/tables/node_table.html +854 -0
  159. simstack/static/docs/_modules/simstack/tables/table_builder.html +642 -0
  160. simstack/static/docs/_modules/simstack/util/async_zip_utils.html +337 -0
  161. simstack/static/docs/_modules/simstack/util/b64mixin.html +339 -0
  162. simstack/static/docs/_modules/simstack/util/cleaned_json_schema.html +336 -0
  163. simstack/static/docs/_modules/simstack/util/config_reader.html +498 -0
  164. simstack/static/docs/_modules/simstack/util/custom_model_dump.html +391 -0
  165. simstack/static/docs/_modules/simstack/util/database_information.html +488 -0
  166. simstack/static/docs/_modules/simstack/util/db.html +1392 -0
  167. simstack/static/docs/_modules/simstack/util/db_logger.html +448 -0
  168. simstack/static/docs/_modules/simstack/util/default_from_dict.html +376 -0
  169. simstack/static/docs/_modules/simstack/util/directory_iterator.html +553 -0
  170. simstack/static/docs/_modules/simstack/util/docstring_parser.html +526 -0
  171. simstack/static/docs/_modules/simstack/util/file_hashing.html +394 -0
  172. simstack/static/docs/_modules/simstack/util/file_transfer_client.html +791 -0
  173. simstack/static/docs/_modules/simstack/util/files.html +733 -0
  174. simstack/static/docs/_modules/simstack/util/find_python_files.html +349 -0
  175. simstack/static/docs/_modules/simstack/util/generate_ui_schema.html +396 -0
  176. simstack/static/docs/_modules/simstack/util/generic_list_mixin.html +487 -0
  177. simstack/static/docs/_modules/simstack/util/get_module_path.html +336 -0
  178. simstack/static/docs/_modules/simstack/util/git_pull.html +381 -0
  179. simstack/static/docs/_modules/simstack/util/git_repository_status.html +411 -0
  180. simstack/static/docs/_modules/simstack/util/import_module.html +377 -0
  181. simstack/static/docs/_modules/simstack/util/importer.html +637 -0
  182. simstack/static/docs/_modules/simstack/util/init_data_source.html +357 -0
  183. simstack/static/docs/_modules/simstack/util/make_graph.html +423 -0
  184. simstack/static/docs/_modules/simstack/util/make_table.html +1171 -0
  185. simstack/static/docs/_modules/simstack/util/mappings.html +378 -0
  186. simstack/static/docs/_modules/simstack/util/minimal_route_finder.html +388 -0
  187. simstack/static/docs/_modules/simstack/util/mock_db.html +472 -0
  188. simstack/static/docs/_modules/simstack/util/module_path_checker.html +354 -0
  189. simstack/static/docs/_modules/simstack/util/object_list_mixin.html +649 -0
  190. simstack/static/docs/_modules/simstack/util/path_manager.html +566 -0
  191. simstack/static/docs/_modules/simstack/util/project_root_finder.html +357 -0
  192. simstack/static/docs/_modules/simstack/util/queue_watcher.html +593 -0
  193. simstack/static/docs/_modules/simstack/util/resource_config.html +532 -0
  194. simstack/static/docs/_modules/simstack/util/route_finder.html +390 -0
  195. simstack/static/docs/_modules/simstack/util/runner_util.html +487 -0
  196. simstack/static/docs/_modules/simstack/util/runner_utils.html +468 -0
  197. simstack/static/docs/_modules/simstack/util/safe_code_executor.html +510 -0
  198. simstack/static/docs/_modules/simstack/util/sample_config.html +414 -0
  199. simstack/static/docs/_modules/simstack/util/sensitive_content_filter.html +364 -0
  200. simstack/static/docs/_modules/simstack/util/setup_logging.html +365 -0
  201. simstack/static/docs/_modules/simstack/util/submit_to_watchdog.html +425 -0
  202. simstack/static/docs/_modules/simstack/util/toml_reader.html +482 -0
  203. simstack/static/docs/_modules/simstack/util/transform_file_name.html +357 -0
  204. simstack/static/docs/_modules/simstack/util/ui_tools.html +541 -0
  205. simstack/static/docs/_sources/architecture.rst.txt +25 -0
  206. simstack/static/docs/_sources/array_lists.rst.txt +60 -0
  207. simstack/static/docs/_sources/ci_pipeline.rst.txt +34 -0
  208. simstack/static/docs/_sources/data.rst.txt +175 -0
  209. simstack/static/docs/_sources/database_migrations.rst.txt +310 -0
  210. simstack/static/docs/_sources/datasets.rst.txt +93 -0
  211. simstack/static/docs/_sources/developer_guide.rst.txt +25 -0
  212. simstack/static/docs/_sources/docker_nodes.rst.txt +149 -0
  213. simstack/static/docs/_sources/files.rst.txt +159 -0
  214. simstack/static/docs/_sources/fire_and_forget_runner.rst.txt +67 -0
  215. simstack/static/docs/_sources/index.rst.txt +25 -0
  216. simstack/static/docs/_sources/installation.rst.txt +213 -0
  217. simstack/static/docs/_sources/lists.rst.txt +111 -0
  218. simstack/static/docs/_sources/mass_runner.rst.txt +91 -0
  219. simstack/static/docs/_sources/misc.rst.txt +106 -0
  220. simstack/static/docs/_sources/overview.rst.txt +91 -0
  221. simstack/static/docs/_sources/recovery.rst.txt +38 -0
  222. simstack/static/docs/_sources/resource_config.rst.txt +141 -0
  223. simstack/static/docs/_sources/simstack/modules/modules.rst.txt +7 -0
  224. simstack/static/docs/_sources/simstack/modules/simstack.core.rst.txt +205 -0
  225. simstack/static/docs/_sources/simstack/modules/simstack.core.services.rst.txt +109 -0
  226. simstack/static/docs/_sources/simstack/modules/simstack.methods.rst.txt +77 -0
  227. simstack/static/docs/_sources/simstack/modules/simstack.models.rst.txt +261 -0
  228. simstack/static/docs/_sources/simstack/modules/simstack.rst.txt +22 -0
  229. simstack/static/docs/_sources/simstack/modules/simstack.tables.rst.txt +45 -0
  230. simstack/static/docs/_sources/simstack/modules/simstack.util.rst.txt +381 -0
  231. simstack/static/docs/_sources/submit.rst.txt +141 -0
  232. simstack/static/docs/_sources/tables.rst.txt +50 -0
  233. simstack/static/docs/_sources/testing_complex_nodes.rst.txt +92 -0
  234. simstack/static/docs/_sources/ui_documentation.rst.txt +272 -0
  235. simstack/static/docs/_sources/workflows.rst.txt +446 -0
  236. simstack/static/docs/_static/base-stemmer.js +476 -0
  237. simstack/static/docs/_static/basic.css +906 -0
  238. simstack/static/docs/_static/cobalt2-theme.css +1 -0
  239. simstack/static/docs/_static/debug.css +69 -0
  240. simstack/static/docs/_static/docs-build-badge.css +51 -0
  241. simstack/static/docs/_static/docs-build-badge.js +51 -0
  242. simstack/static/docs/_static/doctools.js +150 -0
  243. simstack/static/docs/_static/documentation_options.js +13 -0
  244. simstack/static/docs/_static/english-stemmer.js +1066 -0
  245. simstack/static/docs/_static/file.png +0 -0
  246. simstack/static/docs/_static/language_data.js +13 -0
  247. simstack/static/docs/_static/minus.png +0 -0
  248. simstack/static/docs/_static/plus.png +0 -0
  249. simstack/static/docs/_static/pygments.css +250 -0
  250. simstack/static/docs/_static/scripts/furo-extensions.js +0 -0
  251. simstack/static/docs/_static/scripts/furo.js +3 -0
  252. simstack/static/docs/_static/scripts/furo.js.LICENSE.txt +7 -0
  253. simstack/static/docs/_static/scripts/furo.js.map +1 -0
  254. simstack/static/docs/_static/searchtools.js +693 -0
  255. simstack/static/docs/_static/skeleton.css +296 -0
  256. simstack/static/docs/_static/sphinx_highlight.js +159 -0
  257. simstack/static/docs/_static/styles/furo-extensions.css +2 -0
  258. simstack/static/docs/_static/styles/furo-extensions.css.map +1 -0
  259. simstack/static/docs/_static/styles/furo.css +2 -0
  260. simstack/static/docs/_static/styles/furo.css.map +1 -0
  261. simstack/static/docs/architecture.html +340 -0
  262. simstack/static/docs/array_lists.html +678 -0
  263. simstack/static/docs/ci_pipeline.html +385 -0
  264. simstack/static/docs/data.html +545 -0
  265. simstack/static/docs/database_migrations.html +652 -0
  266. simstack/static/docs/datasets.html +1268 -0
  267. simstack/static/docs/developer_guide.html +359 -0
  268. simstack/static/docs/docker_nodes.html +503 -0
  269. simstack/static/docs/files.html +718 -0
  270. simstack/static/docs/fire_and_forget_runner.html +641 -0
  271. simstack/static/docs/genindex.html +6390 -0
  272. simstack/static/docs/index.html +516 -0
  273. simstack/static/docs/installation.html +553 -0
  274. simstack/static/docs/lists.html +478 -0
  275. simstack/static/docs/mass_runner.html +481 -0
  276. simstack/static/docs/misc.html +454 -0
  277. simstack/static/docs/objects.inv +0 -0
  278. simstack/static/docs/overview.html +469 -0
  279. simstack/static/docs/py-modindex.html +1111 -0
  280. simstack/static/docs/recovery.html +371 -0
  281. simstack/static/docs/resource_config.html +590 -0
  282. simstack/static/docs/search.html +327 -0
  283. simstack/static/docs/searchindex.js +1 -0
  284. simstack/static/docs/simstack/modules/modules.html +489 -0
  285. simstack/static/docs/simstack/modules/simstack.core.html +1883 -0
  286. simstack/static/docs/simstack/modules/simstack.core.services.html +698 -0
  287. simstack/static/docs/simstack/modules/simstack.html +3060 -0
  288. simstack/static/docs/simstack/modules/simstack.methods.html +1150 -0
  289. simstack/static/docs/simstack/modules/simstack.models.html +13113 -0
  290. simstack/static/docs/simstack/modules/simstack.tables.html +635 -0
  291. simstack/static/docs/simstack/modules/simstack.util.html +3320 -0
  292. simstack/static/docs/submit.html +487 -0
  293. simstack/static/docs/tables.html +539 -0
  294. simstack/static/docs/testing_complex_nodes.html +458 -0
  295. simstack/static/docs/ui_documentation.html +788 -0
  296. simstack/static/docs/workflows.html +766 -0
  297. simstack/tables/__init__.py +0 -0
  298. simstack/tables/model_table.py +191 -0
  299. simstack/tables/node_children.py +219 -0
  300. simstack/tables/node_table.py +517 -0
  301. simstack/tables/table_builder.py +314 -0
  302. simstack/util/__init__.py +0 -0
  303. simstack/util/async_zip_utils.py +18 -0
  304. simstack/util/b64mixin.py +23 -0
  305. simstack/util/cleaned_json_schema.py +20 -0
  306. simstack/util/config_reader.py +179 -0
  307. simstack/util/custom_model_dump.py +75 -0
  308. simstack/util/database_information.py +160 -0
  309. simstack/util/db.py +1013 -0
  310. simstack/util/db_logger.py +117 -0
  311. simstack/util/default_from_dict.py +57 -0
  312. simstack/util/directory_iterator.py +216 -0
  313. simstack/util/docstring_parser.py +186 -0
  314. simstack/util/file_hashing.py +72 -0
  315. simstack/util/file_transfer_client.py +427 -0
  316. simstack/util/files.py +396 -0
  317. simstack/util/find_python_files.py +33 -0
  318. simstack/util/generate_ui_schema.py +80 -0
  319. simstack/util/generic_list_mixin.py +120 -0
  320. simstack/util/geometry_utils.py +118 -0
  321. simstack/util/get_module_path.py +20 -0
  322. simstack/util/git_pull.py +65 -0
  323. simstack/util/git_repository_status.py +95 -0
  324. simstack/util/import_module.py +63 -0
  325. simstack/util/importer.py +312 -0
  326. simstack/util/init_data_source.py +41 -0
  327. simstack/util/make_graph.py +107 -0
  328. simstack/util/make_table.py +837 -0
  329. simstack/util/mappings.py +41 -0
  330. simstack/util/minimal_route_finder.py +72 -0
  331. simstack/util/mock_db.py +144 -0
  332. simstack/util/module_path_checker.py +38 -0
  333. simstack/util/object_list_mixin.py +282 -0
  334. simstack/util/path_manager.py +223 -0
  335. simstack/util/project_root_finder.py +41 -0
  336. simstack/util/queue_watcher.py +262 -0
  337. simstack/util/resource_config.py +198 -0
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  339. simstack/util/runner_util.py +166 -0
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  343. simstack/util/sensitive_content_filter.py +48 -0
  344. simstack/util/setup_logging.py +49 -0
  345. simstack/util/submit_to_watchdog.py +106 -0
  346. simstack/util/toml_reader.py +142 -0
  347. simstack/util/transform_file_name.py +41 -0
  348. simstack/util/ui_tools.py +213 -0
  349. simstack-2.0.1.dist-info/METADATA +454 -0
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  353. simstack-2.0.1.dist-info/licenses/LICENSE +21 -0
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+ <article role="main" id="furo-main-content">
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+ <section id="persisting-and-visualizing-data">
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+ <span id="persisting-data"></span><h1>Persisting and Visualizing Data<a class="headerlink" href="#persisting-and-visualizing-data" title="Link to this heading">¶</a></h1>
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+ <div class="admonition note">
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+ <p class="admonition-title">Note</p>
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+ <p>This section is intended for node-developers.</p>
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+ </div>
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+ <p>Simstack persists data using a MongoDB database, which is exposed via the
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+ fast-api server to a web-frontend. Each user has a dedicated database
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+ on a MongoDB server which is configured in the configuration file
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+ (<a class="reference internal" href="installation.html#configuration-file"><span class="std std-ref">Create simstack.toml</span></a>).</p>
291
+ <p>To facilitate access to the database in the python workflows, Simstack II uses the odmantic
292
+ package to provide an object-oriented access to the data via odmantic
293
+ Models. Odmantic Models are drived from pydantic (V2) classes and developers
294
+ of nodes (<a class="reference internal" href="workflows.html#workflows"><span class="std std-ref">Workflows</span></a>) can define their own classes deriving from Model.</p>
295
+ <p>To customize the appearance of the models in the UI, the model definition
296
+ should be decorated by <code class="docutils literal notranslate"><span class="pre">&#64;simstack_model</span></code>
297
+ (<code class="xref py py-func docutils literal notranslate"><span class="pre">simstack.core.simstack_model.simstack_model()</span></code>)
298
+ which provides ui-related functionality discussed below
299
+ (<a class="reference internal" href="#model-appearance"><span class="std std-ref">Model Appearance in the GUI</span></a>)</p>
300
+ <section id="model-definitions">
301
+ <h2>Model Definitions<a class="headerlink" href="#model-definitions" title="Link to this heading">¶</a></h2>
302
+ <p>For detailed information on odmantic models, consult the odmantic
303
+ documentation.</p>
304
+ <p>A basic model definition look like:</p>
305
+ <div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">List</span>
306
+ <span class="kn">from</span><span class="w"> </span><span class="nn">odmantic</span><span class="w"> </span><span class="kn">import</span> <span class="n">Model</span><span class="p">,</span> <span class="n">EmbeddedModel</span><span class="p">,</span> <span class="n">Field</span>
307
+
308
+ <span class="nd">@simstack_model</span>
309
+ <span class="k">class</span><span class="w"> </span><span class="nc">OtherModel</span><span class="p">(</span><span class="n">Model</span><span class="p">):</span>
310
+ <span class="n">observations</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="nb">float</span><span class="p">]</span>
311
+ <span class="nb">max</span><span class="p">:</span> <span class="nb">float</span>
312
+
313
+ <span class="nd">@simstack_model</span>
314
+ <span class="k">class</span><span class="w"> </span><span class="nc">SmallData</span><span class="p">(</span><span class="n">EmbeddedModel</span><span class="p">)</span>
315
+ <span class="n">number</span><span class="p">:</span> <span class="nb">int</span>
316
+
317
+ <span class="nd">@simstack_model</span>
318
+ <span class="k">class</span><span class="w"> </span><span class="nc">ComplexData</span><span class="p">(</span><span class="n">Model</span><span class="p">)</span>
319
+ <span class="n">counter</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="n">Field</span><span class="p">(</span><span class="n">default</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
320
+ <span class="n">limit</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
321
+ <span class="n">other_model</span><span class="p">:</span> <span class="n">OtherModel</span> <span class="o">=</span> <span class="n">Reference</span><span class="p">()</span> <span class="c1"># this defines a reference to the</span>
322
+ <span class="c1"># other table in the db</span>
323
+ <span class="c1"># loading ComplexData will load</span>
324
+ <span class="c1"># the other model too</span>
325
+ <span class="n">small_data</span><span class="p">:</span> <span class="n">SmallData</span> <span class="c1"># directly stored in the complex_data table</span>
326
+ </pre></div>
327
+ </div>
328
+ <div class="admonition important">
329
+ <p class="admonition-title">Important</p>
330
+ <ul class="simple">
331
+ <li><p>The node developer does not have explicitly save models to the db, the
332
+ &#64;node decorator will take care of this.</p></li>
333
+ <li><p>There is <strong>no Model inheritance</strong>, which is a real pain.</p></li>
334
+ <li><p>ODMantic Issue #484: <a class="reference external" href="https://github.com/art049/odmantic/issues/484">https://github.com/art049/odmantic/issues/484</a></p></li>
335
+ </ul>
336
+ </div>
337
+ <div class="admonition note">
338
+ <p class="admonition-title">Note</p>
339
+ <p>Even though its formally allowed do not use Dict[str,Any] in models,
340
+ because the UI behavior is unpredictable (see below).
341
+ Dict[str,known_type] is ok.</p>
342
+ </div>
343
+ <p><strong>Standard Models</strong></p>
344
+ <p><a class="reference internal" href="simstack/modules/simstack.models.html#module-simstack.models.base_types" title="simstack.models.base_types"><code class="xref py py-mod docutils literal notranslate"><span class="pre">simstack.models.base_types</span></code></a> provides basic models:</p>
345
+ <ul class="simple">
346
+ <li><p>IntData</p></li>
347
+ <li><p>StrData</p></li>
348
+ <li><p>FloatData</p></li>
349
+ <li><p>BooleanData</p></li>
350
+ </ul>
351
+ <p>And <a class="reference internal" href="simstack/modules/simstack.models.html#module-simstack.models.array_storage" title="simstack.models.array_storage"><code class="xref py py-mod docutils literal notranslate"><span class="pre">simstack.models.array_storage</span></code></a>:</p>
352
+ <ul class="simple">
353
+ <li><p>ArrayStorage</p></li>
354
+ <li><p>ArrayList</p></li>
355
+ </ul>
356
+ <p>And the list mixins for creating custom list models (see <a class="reference internal" href="lists.html"><span class="doc">List Mixins</span></a>):</p>
357
+ <ul class="simple">
358
+ <li><p>GenericListMixin</p></li>
359
+ <li><p>ObjectListMixin</p></li>
360
+ </ul>
361
+ <p>And for file management (see <a class="reference internal" href="files.html"><span class="doc">File Management</span></a>):</p>
362
+ <ul class="simple">
363
+ <li><p>FileStack</p></li>
364
+ <li><p>FileList</p></li>
365
+ <li><p>FileListModel</p></li>
366
+ </ul>
367
+ <p>And the parallel execution utilities (see <a class="reference internal" href="mass_runner.html"><span class="doc">MassRunner</span></a> and <a class="reference internal" href="fire_and_forget_runner.html"><span class="doc">FireAndForgetRunner</span></a>):</p>
368
+ <ul class="simple">
369
+ <li><p>MassRunner</p></li>
370
+ <li><p>FireAndForgetRunner</p></li>
371
+ </ul>
372
+ <p><a class="reference internal" href="simstack/modules/simstack.models.html#simstack.models.array_storage.ArrayStorage" title="simstack.models.array_storage.ArrayStorage"><code class="xref py py-class docutils literal notranslate"><span class="pre">simstack.models.array_storage.ArrayStorage</span></code></a> is an example of a class which
373
+ packs its content by serializing and deserializing it. This is the
374
+ recommended procedure for all content which MongoDB cannot natively store. To
375
+ interact with such classes, the developer has to provide access functions and
376
+ a member function <code class="docutils literal notranslate"><span class="pre">custom_model_dump</span></code> which the fast-api server to convert
377
+ the content of the class into a dict which can be visualized in the GUI.</p>
378
+ <section id="model-appearance-in-the-gui">
379
+ <span id="model-appearance"></span><h3>Model Appearance in the GUI<a class="headerlink" href="#model-appearance-in-the-gui" title="Link to this heading">¶</a></h3>
380
+ <p>The <code class="xref py py-class docutils literal notranslate"><span class="pre">simstack.models.models.ModelTable</span></code> table in the database stores
381
+ for each class a json-schema (derived from the pydantic json-schema) and a
382
+ <code class="docutils literal notranslate"><span class="pre">ui_scheme</span></code> which is created by
383
+ <code class="xref py py-func docutils literal notranslate"><span class="pre">simstack.core.model_table.make_model_table()</span></code>.</p>
384
+ <p>The UI used a package react-json-forms (rjsf) to interpret these schema to
385
+ provide input and output representations of the model. When queried the
386
+ routes of the fast-api server provide (get) or store (post) dicts that are
387
+ compatible with the json-schema. 8</p>
388
+ <p><strong>Class Methods</strong></p>
389
+ <div class="table-wrapper docutils container">
390
+ <table class="docutils align-default">
391
+ <tbody>
392
+ <tr class="row-odd"><td><p>Function Name</p></td>
393
+ <td><p>Purpose</p></td>
394
+ <td><p>default</p></td>
395
+ </tr>
396
+ <tr class="row-even"><td><p>json_schema</p></td>
397
+ <td><p>json schema for rjsf</p></td>
398
+ <td><p>pydantic-schema</p></td>
399
+ </tr>
400
+ <tr class="row-odd"><td><p>ui_schema</p></td>
401
+ <td><p>ui_schema dict for rjsf</p></td>
402
+ <td><p>hide id</p></td>
403
+ </tr>
404
+ <tr class="row-even"><td><p>ui_make_title</p></td>
405
+ <td><p>title for the model in ui</p></td>
406
+ <td><p>class name</p></td>
407
+ </tr>
408
+ <tr class="row-odd"><td><p>from_dict</p></td>
409
+ <td><p>create model instance from dict</p></td>
410
+ <td><p>odmantic func</p></td>
411
+ </tr>
412
+ <tr class="row-even"><td><p>from_model</p></td>
413
+ <td><p>copy constructor</p></td>
414
+ <td><p>odmantic default</p></td>
415
+ </tr>
416
+ </tbody>
417
+ </table>
418
+ </div>
419
+ <p><strong>Instance Functions</strong></p>
420
+ <div class="table-wrapper docutils container">
421
+ <table class="docutils align-default">
422
+ <tbody>
423
+ <tr class="row-odd"><td><p>Function Name</p></td>
424
+ <td><p>Purpose</p></td>
425
+ <td><p>default</p></td>
426
+ </tr>
427
+ <tr class="row-even"><td><p>custom_model_dump</p></td>
428
+ <td><p>convert model to dict</p></td>
429
+ <td><p>model_dump</p></td>
430
+ </tr>
431
+ </tbody>
432
+ </table>
433
+ </div>
434
+ </section>
435
+ </section>
436
+ <section id="advanced-tools">
437
+ <h2>Advanced Tools<a class="headerlink" href="#advanced-tools" title="Link to this heading">¶</a></h2>
438
+ <p>Conditional Schema</p>
439
+ <div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">schema</span><span class="p">[</span><span class="s1">&#39;properties&#39;</span><span class="p">][</span><span class="s1">&#39;test&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
440
+ <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;object&quot;</span><span class="p">,</span>
441
+ <span class="s2">&quot;oneOf&quot;</span><span class="p">:</span> <span class="p">[</span>
442
+ <span class="p">{</span>
443
+ <span class="s2">&quot;properties&quot;</span><span class="p">:</span> <span class="p">{</span>
444
+ <span class="s2">&quot;lorem&quot;</span><span class="p">:</span> <span class="p">{</span>
445
+ <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;string&quot;</span>
446
+ <span class="p">}</span>
447
+ <span class="p">},</span>
448
+ <span class="s2">&quot;required&quot;</span><span class="p">:</span> <span class="p">[</span>
449
+ <span class="s2">&quot;lorem&quot;</span>
450
+ <span class="p">]</span>
451
+ <span class="p">},</span>
452
+ <span class="p">{</span>
453
+ <span class="s2">&quot;properties&quot;</span><span class="p">:</span> <span class="p">{</span>
454
+ <span class="s2">&quot;ipsum&quot;</span><span class="p">:</span> <span class="p">{</span>
455
+ <span class="s2">&quot;type&quot;</span><span class="p">:</span> <span class="s2">&quot;string&quot;</span>
456
+ <span class="p">}</span>
457
+ <span class="p">},</span>
458
+ <span class="s2">&quot;required&quot;</span><span class="p">:</span> <span class="p">[</span>
459
+ <span class="s2">&quot;ipsum&quot;</span>
460
+ <span class="p">]</span>
461
+ <span class="p">}</span>
462
+ </pre></div>
463
+ </div>
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+ </section>
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+ <li><a class="reference internal" href="#model-appearance-in-the-gui">Model Appearance in the GUI</a></li>
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