sequenzo 0.1.18__cp39-cp39-macosx_10_9_universal2.whl → 0.1.20__cp39-cp39-macosx_10_9_universal2.whl

sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/NonBlockingThreadPool.h

@@ -1,486 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2016 Dmitry Vyukov <dvyukov@google.com>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_CXX11_THREADPOOL_NONBLOCKING_THREAD_POOL_H
-#define EIGEN_CXX11_THREADPOOL_NONBLOCKING_THREAD_POOL_H
-
-namespace Eigen {
-
-template <typename Environment>
-class ThreadPoolTempl : public Eigen::ThreadPoolInterface {
- public:
-  typedef typename Environment::Task Task;
-  typedef RunQueue<Task, 1024> Queue;
-
-  ThreadPoolTempl(int num_threads, Environment env = Environment())
-      : ThreadPoolTempl(num_threads, true, env) {}
-
-  ThreadPoolTempl(int num_threads, bool allow_spinning,
-                  Environment env = Environment())
-      : env_(env),
-        num_threads_(num_threads),
-        allow_spinning_(allow_spinning),
-        thread_data_(num_threads),
-        all_coprimes_(num_threads),
-        waiters_(num_threads),
-        global_steal_partition_(EncodePartition(0, num_threads_)),
-        blocked_(0),
-        spinning_(0),
-        done_(false),
-        cancelled_(false),
-        ec_(waiters_) {
-    waiters_.resize(num_threads_);
-    // Calculate coprimes of all numbers [1, num_threads].
-    // Coprimes are used for random walks over all threads in Steal
-    // and NonEmptyQueueIndex. Iteration is based on the fact that if we take
-    // a random starting thread index t and calculate num_threads - 1 subsequent
-    // indices as (t + coprime) % num_threads, we will cover all threads without
-    // repetitions (effectively getting a presudo-random permutation of thread
-    // indices).
-    eigen_plain_assert(num_threads_ < kMaxThreads);
-    for (int i = 1; i <= num_threads_; ++i) {
-      all_coprimes_.emplace_back(i);
-      ComputeCoprimes(i, &all_coprimes_.back());
-    }
-#ifndef EIGEN_THREAD_LOCAL
-    init_barrier_.reset(new Barrier(num_threads_));
-#endif
-    thread_data_.resize(num_threads_);
-    for (int i = 0; i < num_threads_; i++) {
-      SetStealPartition(i, EncodePartition(0, num_threads_));
-      thread_data_[i].thread.reset(
-          env_.CreateThread([this, i]() { WorkerLoop(i); }));
-    }
-#ifndef EIGEN_THREAD_LOCAL
-    // Wait for workers to initialize per_thread_map_. Otherwise we might race
-    // with them in Schedule or CurrentThreadId.
-    init_barrier_->Wait();
-#endif
-  }
-
-  ~ThreadPoolTempl() {
-    done_ = true;
-
-    // Now if all threads block without work, they will start exiting.
-    // But note that threads can continue to work arbitrary long,
-    // block, submit new work, unblock and otherwise live full life.
-    if (!cancelled_) {
-      ec_.Notify(true);
-    } else {
-      // Since we were cancelled, there might be entries in the queues.
-      // Empty them to prevent their destructor from asserting.
-      for (size_t i = 0; i < thread_data_.size(); i++) {
-        thread_data_[i].queue.Flush();
-      }
-    }
-    // Join threads explicitly (by destroying) to avoid destruction order within
-    // this class.
-    for (size_t i = 0; i < thread_data_.size(); ++i)
-      thread_data_[i].thread.reset();
-  }
-
-  void SetStealPartitions(const std::vector<std::pair<unsigned, unsigned>>& partitions) {
-    eigen_plain_assert(partitions.size() == static_cast<std::size_t>(num_threads_));
-
-    // Pass this information to each thread queue.
-    for (int i = 0; i < num_threads_; i++) {
-      const auto& pair = partitions[i];
-      unsigned start = pair.first, end = pair.second;
-      AssertBounds(start, end);
-      unsigned val = EncodePartition(start, end);
-      SetStealPartition(i, val);
-    }
-  }
-
-  void Schedule(std::function<void()> fn) EIGEN_OVERRIDE {
-    ScheduleWithHint(std::move(fn), 0, num_threads_);
-  }
-
-  void ScheduleWithHint(std::function<void()> fn, int start,
-                        int limit) override {
-    Task t = env_.CreateTask(std::move(fn));
-    PerThread* pt = GetPerThread();
-    if (pt->pool == this) {
-      // Worker thread of this pool, push onto the thread's queue.
-      Queue& q = thread_data_[pt->thread_id].queue;
-      t = q.PushFront(std::move(t));
-    } else {
-      // A free-standing thread (or worker of another pool), push onto a random
-      // queue.
-      eigen_plain_assert(start < limit);
-      eigen_plain_assert(limit <= num_threads_);
-      int num_queues = limit - start;
-      int rnd = Rand(&pt->rand) % num_queues;
-      eigen_plain_assert(start + rnd < limit);
-      Queue& q = thread_data_[start + rnd].queue;
-      t = q.PushBack(std::move(t));
-    }
-    // Note: below we touch this after making w available to worker threads.
-    // Strictly speaking, this can lead to a racy-use-after-free. Consider that
-    // Schedule is called from a thread that is neither main thread nor a worker
-    // thread of this pool. Then, execution of w directly or indirectly
-    // completes overall computations, which in turn leads to destruction of
-    // this. We expect that such scenario is prevented by program, that is,
-    // this is kept alive while any threads can potentially be in Schedule.
-    if (!t.f) {
-      ec_.Notify(false);
-    } else {
-      env_.ExecuteTask(t);  // Push failed, execute directly.
-    }
-  }
-
-  void Cancel() EIGEN_OVERRIDE {
-    cancelled_ = true;
-    done_ = true;
-
-    // Let each thread know it's been cancelled.
-#ifdef EIGEN_THREAD_ENV_SUPPORTS_CANCELLATION
-    for (size_t i = 0; i < thread_data_.size(); i++) {
-      thread_data_[i].thread->OnCancel();
-    }
-#endif
-
-    // Wake up the threads without work to let them exit on their own.
-    ec_.Notify(true);
-  }
-
-  int NumThreads() const EIGEN_FINAL { return num_threads_; }
-
-  int CurrentThreadId() const EIGEN_FINAL {
-    const PerThread* pt = const_cast<ThreadPoolTempl*>(this)->GetPerThread();
-    if (pt->pool == this) {
-      return pt->thread_id;
-    } else {
-      return -1;
-    }
-  }
-
- private:
-  // Create a single atomic<int> that encodes start and limit information for
-  // each thread.
-  // We expect num_threads_ < 65536, so we can store them in a single
-  // std::atomic<unsigned>.
-  // Exposed publicly as static functions so that external callers can reuse
-  // this encode/decode logic for maintaining their own thread-safe copies of
-  // scheduling and steal domain(s).
-  static const int kMaxPartitionBits = 16;
-  static const int kMaxThreads = 1 << kMaxPartitionBits;
-
-  inline unsigned EncodePartition(unsigned start, unsigned limit) {
-    return (start << kMaxPartitionBits) | limit;
-  }
-
-  inline void DecodePartition(unsigned val, unsigned* start, unsigned* limit) {
-    *limit = val & (kMaxThreads - 1);
-    val >>= kMaxPartitionBits;
-    *start = val;
-  }
-
-  void AssertBounds(int start, int end) {
-    eigen_plain_assert(start >= 0);
-    eigen_plain_assert(start < end);  // non-zero sized partition
-    eigen_plain_assert(end <= num_threads_);
-  }
-
-  inline void SetStealPartition(size_t i, unsigned val) {
-    thread_data_[i].steal_partition.store(val, std::memory_order_relaxed);
-  }
-
-  inline unsigned GetStealPartition(int i) {
-    return thread_data_[i].steal_partition.load(std::memory_order_relaxed);
-  }
-
-  void ComputeCoprimes(int N, MaxSizeVector<unsigned>* coprimes) {
-    for (int i = 1; i <= N; i++) {
-      unsigned a = i;
-      unsigned b = N;
-      // If GCD(a, b) == 1, then a and b are coprimes.
-      while (b != 0) {
-        unsigned tmp = a;
-        a = b;
-        b = tmp % b;
-      }
-      if (a == 1) {
-        coprimes->push_back(i);
-      }
-    }
-  }
-
-  typedef typename Environment::EnvThread Thread;
-
-  struct PerThread {
-    constexpr PerThread() : pool(NULL), rand(0), thread_id(-1) {}
-    ThreadPoolTempl* pool;  // Parent pool, or null for normal threads.
-    uint64_t rand;          // Random generator state.
-    int thread_id;          // Worker thread index in pool.
-#ifndef EIGEN_THREAD_LOCAL
-    // Prevent false sharing.
-    char pad_[128];
-#endif
-  };
-
-  struct ThreadData {
-    constexpr ThreadData() : thread(), steal_partition(0), queue() {}
-    std::unique_ptr<Thread> thread;
-    std::atomic<unsigned> steal_partition;
-    Queue queue;
-  };
-
-  Environment env_;
-  const int num_threads_;
-  const bool allow_spinning_;
-  MaxSizeVector<ThreadData> thread_data_;
-  MaxSizeVector<MaxSizeVector<unsigned>> all_coprimes_;
-  MaxSizeVector<EventCount::Waiter> waiters_;
-  unsigned global_steal_partition_;
-  std::atomic<unsigned> blocked_;
-  std::atomic<bool> spinning_;
-  std::atomic<bool> done_;
-  std::atomic<bool> cancelled_;
-  EventCount ec_;
-#ifndef EIGEN_THREAD_LOCAL
-  std::unique_ptr<Barrier> init_barrier_;
-  std::mutex per_thread_map_mutex_;  // Protects per_thread_map_.
-  std::unordered_map<uint64_t, std::unique_ptr<PerThread>> per_thread_map_;
-#endif
-
-  // Main worker thread loop.
-  void WorkerLoop(int thread_id) {
-#ifndef EIGEN_THREAD_LOCAL
-    std::unique_ptr<PerThread> new_pt(new PerThread());
-    per_thread_map_mutex_.lock();
-    bool insertOK = per_thread_map_.emplace(GlobalThreadIdHash(), std::move(new_pt)).second;
-    eigen_plain_assert(insertOK);
-    EIGEN_UNUSED_VARIABLE(insertOK);
-    per_thread_map_mutex_.unlock();
-    init_barrier_->Notify();
-    init_barrier_->Wait();
-#endif
-    PerThread* pt = GetPerThread();
-    pt->pool = this;
-    pt->rand = GlobalThreadIdHash();
-    pt->thread_id = thread_id;
-    Queue& q = thread_data_[thread_id].queue;
-    EventCount::Waiter* waiter = &waiters_[thread_id];
-    // TODO(dvyukov,rmlarsen): The time spent in NonEmptyQueueIndex() is
-    // proportional to num_threads_ and we assume that new work is scheduled at
-    // a constant rate, so we set spin_count to 5000 / num_threads_. The
-    // constant was picked based on a fair dice roll, tune it.
-    const int spin_count =
-        allow_spinning_ && num_threads_ > 0 ? 5000 / num_threads_ : 0;
-    if (num_threads_ == 1) {
-      // For num_threads_ == 1 there is no point in going through the expensive
-      // steal loop. Moreover, since NonEmptyQueueIndex() calls PopBack() on the
-      // victim queues it might reverse the order in which ops are executed
-      // compared to the order in which they are scheduled, which tends to be
-      // counter-productive for the types of I/O workloads the single thread
-      // pools tend to be used for.
-      while (!cancelled_) {
-        Task t = q.PopFront();
-        for (int i = 0; i < spin_count && !t.f; i++) {
-          if (!cancelled_.load(std::memory_order_relaxed)) {
-            t = q.PopFront();
-          }
-        }
-        if (!t.f) {
-          if (!WaitForWork(waiter, &t)) {
-            return;
-          }
-        }
-        if (t.f) {
-          env_.ExecuteTask(t);
-        }
-      }
-    } else {
-      while (!cancelled_) {
-        Task t = q.PopFront();
-        if (!t.f) {
-          t = LocalSteal();
-          if (!t.f) {
-            t = GlobalSteal();
-            if (!t.f) {
-              // Leave one thread spinning. This reduces latency.
-              if (allow_spinning_ && !spinning_ && !spinning_.exchange(true)) {
-                for (int i = 0; i < spin_count && !t.f; i++) {
-                  if (!cancelled_.load(std::memory_order_relaxed)) {
-                    t = GlobalSteal();
-                  } else {
-                    return;
-                  }
-                }
-                spinning_ = false;
-              }
-              if (!t.f) {
-                if (!WaitForWork(waiter, &t)) {
-                  return;
-                }
-              }
-            }
-          }
-        }
-        if (t.f) {
-          env_.ExecuteTask(t);
-        }
-      }
-    }
-  }
-
-  // Steal tries to steal work from other worker threads in the range [start,
-  // limit) in best-effort manner.
-  Task Steal(unsigned start, unsigned limit) {
-    PerThread* pt = GetPerThread();
-    const size_t size = limit - start;
-    unsigned r = Rand(&pt->rand);
-    // Reduce r into [0, size) range, this utilizes trick from
-    // https://lemire.me/blog/2016/06/27/a-fast-alternative-to-the-modulo-reduction/
-    eigen_plain_assert(all_coprimes_[size - 1].size() < (1<<30));
-    unsigned victim = ((uint64_t)r * (uint64_t)size) >> 32;
-    unsigned index = ((uint64_t) all_coprimes_[size - 1].size() * (uint64_t)r) >> 32;
-    unsigned inc = all_coprimes_[size - 1][index];
-
-    for (unsigned i = 0; i < size; i++) {
-      eigen_plain_assert(start + victim < limit);
-      Task t = thread_data_[start + victim].queue.PopBack();
-      if (t.f) {
-        return t;
-      }
-      victim += inc;
-      if (victim >= size) {
-        victim -= size;
-      }
-    }
-    return Task();
-  }
-
-  // Steals work within threads belonging to the partition.
-  Task LocalSteal() {
-    PerThread* pt = GetPerThread();
-    unsigned partition = GetStealPartition(pt->thread_id);
-    // If thread steal partition is the same as global partition, there is no
-    // need to go through the steal loop twice.
-    if (global_steal_partition_ == partition) return Task();
-    unsigned start, limit;
-    DecodePartition(partition, &start, &limit);
-    AssertBounds(start, limit);
-
-    return Steal(start, limit);
-  }
-
-  // Steals work from any other thread in the pool.
-  Task GlobalSteal() {
-    return Steal(0, num_threads_);
-  }
-
-
-  // WaitForWork blocks until new work is available (returns true), or if it is
-  // time to exit (returns false). Can optionally return a task to execute in t
-  // (in such case t.f != nullptr on return).
-  bool WaitForWork(EventCount::Waiter* waiter, Task* t) {
-    eigen_plain_assert(!t->f);
-    // We already did best-effort emptiness check in Steal, so prepare for
-    // blocking.
-    ec_.Prewait();
-    // Now do a reliable emptiness check.
-    int victim = NonEmptyQueueIndex();
-    if (victim != -1) {
-      ec_.CancelWait();
-      if (cancelled_) {
-        return false;
-      } else {
-        *t = thread_data_[victim].queue.PopBack();
-        return true;
-      }
-    }
-    // Number of blocked threads is used as termination condition.
-    // If we are shutting down and all worker threads blocked without work,
-    // that's we are done.
-    blocked_++;
-    // TODO is blocked_ required to be unsigned?
-    if (done_ && blocked_ == static_cast<unsigned>(num_threads_)) {
-      ec_.CancelWait();
-      // Almost done, but need to re-check queues.
-      // Consider that all queues are empty and all worker threads are preempted
-      // right after incrementing blocked_ above. Now a free-standing thread
-      // submits work and calls destructor (which sets done_). If we don't
-      // re-check queues, we will exit leaving the work unexecuted.
-      if (NonEmptyQueueIndex() != -1) {
-        // Note: we must not pop from queues before we decrement blocked_,
-        // otherwise the following scenario is possible. Consider that instead
-        // of checking for emptiness we popped the only element from queues.
-        // Now other worker threads can start exiting, which is bad if the
-        // work item submits other work. So we just check emptiness here,
-        // which ensures that all worker threads exit at the same time.
-        blocked_--;
-        return true;
-      }
-      // Reached stable termination state.
-      ec_.Notify(true);
-      return false;
-    }
-    ec_.CommitWait(waiter);
-    blocked_--;
-    return true;
-  }
-
-  int NonEmptyQueueIndex() {
-    PerThread* pt = GetPerThread();
-    // We intentionally design NonEmptyQueueIndex to steal work from
-    // anywhere in the queue so threads don't block in WaitForWork() forever
-    // when all threads in their partition go to sleep. Steal is still local.
-    const size_t size = thread_data_.size();
-    unsigned r = Rand(&pt->rand);
-    unsigned inc = all_coprimes_[size - 1][r % all_coprimes_[size - 1].size()];
-    unsigned victim = r % size;
-    for (unsigned i = 0; i < size; i++) {
-      if (!thread_data_[victim].queue.Empty()) {
-        return victim;
-      }
-      victim += inc;
-      if (victim >= size) {
-        victim -= size;
-      }
-    }
-    return -1;
-  }
-
-  static EIGEN_STRONG_INLINE uint64_t GlobalThreadIdHash() {
-    return std::hash<std::thread::id>()(std::this_thread::get_id());
-  }
-
-  EIGEN_STRONG_INLINE PerThread* GetPerThread() {
-#ifndef EIGEN_THREAD_LOCAL
-    static PerThread dummy;
-    auto it = per_thread_map_.find(GlobalThreadIdHash());
-    if (it == per_thread_map_.end()) {
-      return &dummy;
-    } else {
-      return it->second.get();
-    }
-#else
-    EIGEN_THREAD_LOCAL PerThread per_thread_;
-    PerThread* pt = &per_thread_;
-    return pt;
-#endif
-  }
-
-  static EIGEN_STRONG_INLINE unsigned Rand(uint64_t* state) {
-    uint64_t current = *state;
-    // Update the internal state
-    *state = current * 6364136223846793005ULL + 0xda3e39cb94b95bdbULL;
-    // Generate the random output (using the PCG-XSH-RS scheme)
-    return static_cast<unsigned>((current ^ (current >> 22)) >>
-                                 (22 + (current >> 61)));
-  }
-};
-
-typedef ThreadPoolTempl<StlThreadEnvironment> ThreadPool;
-
-}  // namespace Eigen
-
-#endif  // EIGEN_CXX11_THREADPOOL_NONBLOCKING_THREAD_POOL_H