sequenzo 0.1.18__cp39-cp39-macosx_10_9_universal2.whl → 0.1.20__cp39-cp39-macosx_10_9_universal2.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of sequenzo might be problematic. Click here for more details.

Files changed (360) hide show
  1. sequenzo/__init__.py +39 -7
  2. sequenzo/big_data/clara/utils/get_weighted_diss.c +157 -157
  3. sequenzo/big_data/clara/utils/get_weighted_diss.cpython-39-darwin.so +0 -0
  4. sequenzo/clustering/KMedoids.py +39 -0
  5. sequenzo/clustering/hierarchical_clustering.py +108 -6
  6. sequenzo/define_sequence_data.py +10 -1
  7. sequenzo/dissimilarity_measures/get_distance_matrix.py +2 -3
  8. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  9. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +157 -157
  10. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-39-darwin.so +0 -0
  11. sequenzo/dissimilarity_measures/utils/seqconc.c +157 -157
  12. sequenzo/dissimilarity_measures/utils/seqconc.cpython-39-darwin.so +0 -0
  13. sequenzo/dissimilarity_measures/utils/seqdss.c +157 -157
  14. sequenzo/dissimilarity_measures/utils/seqdss.cpython-39-darwin.so +0 -0
  15. sequenzo/dissimilarity_measures/utils/seqdur.c +157 -157
  16. sequenzo/dissimilarity_measures/utils/seqdur.cpython-39-darwin.so +0 -0
  17. sequenzo/dissimilarity_measures/utils/seqlength.c +157 -157
  18. sequenzo/dissimilarity_measures/utils/seqlength.cpython-39-darwin.so +0 -0
  19. sequenzo/multidomain/cat.py +0 -53
  20. sequenzo/multidomain/dat.py +11 -3
  21. sequenzo/multidomain/idcd.py +0 -3
  22. sequenzo/multidomain/linked_polyad.py +0 -1
  23. sequenzo/openmp_setup.py +233 -0
  24. sequenzo/visualization/plot_transition_matrix.py +21 -22
  25. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/METADATA +71 -10
  26. sequenzo-0.1.20.dist-info/RECORD +215 -0
  27. sequenzo/dissimilarity_measures/setup.py +0 -35
  28. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  29. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  30. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  31. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  32. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  33. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  34. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  35. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  36. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  37. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  38. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  39. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  40. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  41. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  42. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  43. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  44. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  45. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  46. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  47. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  48. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  49. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  50. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  51. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  52. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  53. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  54. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  55. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  56. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  57. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  58. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  59. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  60. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  61. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  62. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  63. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  64. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  65. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  66. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  67. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  68. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  69. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  70. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  71. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  72. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  73. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  74. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  75. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  76. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  77. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  78. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  79. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  80. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  81. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  82. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  83. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  84. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  85. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  86. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  87. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  88. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  89. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  90. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +0 -83
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseQR/SparseQR.h +0 -758
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h +0 -116
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h +0 -106
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h +0 -131
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h +0 -84
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +0 -1025
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +0 -642
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Image.h +0 -82
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Kernel.h +0 -79
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/RealSvd2x2.h +0 -55
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/blas.h +0 -440
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapack.h +0 -152
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke.h +0 -16292
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke_mangling.h +0 -17
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +0 -358
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +0 -696
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/BlockMethods.h +0 -1442
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +0 -115
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +0 -177
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/IndexedViewMethods.h +0 -262
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +0 -152
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +0 -95
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ReshapedMethods.h +0 -149
  170. sequenzo/dissimilarity_measures/src/eigen/blas/BandTriangularSolver.h +0 -97
  171. sequenzo/dissimilarity_measures/src/eigen/blas/GeneralRank1Update.h +0 -44
  172. sequenzo/dissimilarity_measures/src/eigen/blas/PackedSelfadjointProduct.h +0 -53
  173. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularMatrixVector.h +0 -79
  174. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularSolverVector.h +0 -88
  175. sequenzo/dissimilarity_measures/src/eigen/blas/Rank2Update.h +0 -57
  176. sequenzo/dissimilarity_measures/src/eigen/blas/common.h +0 -175
  177. sequenzo/dissimilarity_measures/src/eigen/blas/f2c/datatypes.h +0 -24
  178. sequenzo/dissimilarity_measures/src/eigen/blas/level1_cplx_impl.h +0 -155
  179. sequenzo/dissimilarity_measures/src/eigen/blas/level1_impl.h +0 -144
  180. sequenzo/dissimilarity_measures/src/eigen/blas/level1_real_impl.h +0 -122
  181. sequenzo/dissimilarity_measures/src/eigen/blas/level2_cplx_impl.h +0 -360
  182. sequenzo/dissimilarity_measures/src/eigen/blas/level2_impl.h +0 -553
  183. sequenzo/dissimilarity_measures/src/eigen/blas/level2_real_impl.h +0 -306
  184. sequenzo/dissimilarity_measures/src/eigen/blas/level3_impl.h +0 -702
  185. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/__init__.py +0 -1
  186. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/printers.py +0 -314
  187. sequenzo/dissimilarity_measures/src/eigen/lapack/lapack_common.h +0 -29
  188. sequenzo/dissimilarity_measures/src/eigen/scripts/relicense.py +0 -69
  189. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/Tensor.h +0 -554
  190. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorArgMax.h +0 -329
  191. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorAssign.h +0 -247
  192. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBase.h +0 -1176
  193. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBlock.h +0 -1559
  194. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBroadcasting.h +0 -1093
  195. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorChipping.h +0 -518
  196. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConcatenation.h +0 -377
  197. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContraction.h +0 -1023
  198. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionBlocking.h +0 -73
  199. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionCuda.h +0 -6
  200. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionGpu.h +0 -1413
  201. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionMapper.h +0 -575
  202. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionSycl.h +0 -1650
  203. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionThreadPool.h +0 -1679
  204. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConversion.h +0 -456
  205. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolution.h +0 -1132
  206. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolutionSycl.h +0 -544
  207. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCostModel.h +0 -214
  208. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCustomOp.h +0 -347
  209. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDevice.h +0 -137
  210. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceCuda.h +0 -6
  211. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceDefault.h +0 -104
  212. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceGpu.h +0 -389
  213. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceSycl.h +0 -1048
  214. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceThreadPool.h +0 -409
  215. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensionList.h +0 -236
  216. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensions.h +0 -490
  217. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvalTo.h +0 -236
  218. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvaluator.h +0 -983
  219. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExecutor.h +0 -703
  220. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExpr.h +0 -388
  221. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFFT.h +0 -669
  222. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFixedSize.h +0 -379
  223. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForcedEval.h +0 -237
  224. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForwardDeclarations.h +0 -191
  225. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFunctors.h +0 -488
  226. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGenerator.h +0 -302
  227. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGlobalFunctions.h +0 -33
  228. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaDefines.h +0 -99
  229. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaUndefines.h +0 -44
  230. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIO.h +0 -79
  231. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorImagePatch.h +0 -603
  232. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIndexList.h +0 -738
  233. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInflation.h +0 -247
  234. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInitializer.h +0 -82
  235. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIntDiv.h +0 -263
  236. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorLayoutSwap.h +0 -216
  237. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMacros.h +0 -98
  238. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMap.h +0 -327
  239. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMeta.h +0 -311
  240. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMorphing.h +0 -1102
  241. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPadding.h +0 -708
  242. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPatch.h +0 -291
  243. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRandom.h +0 -322
  244. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReduction.h +0 -998
  245. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionCuda.h +0 -6
  246. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionGpu.h +0 -966
  247. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionSycl.h +0 -582
  248. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRef.h +0 -454
  249. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReverse.h +0 -465
  250. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScan.h +0 -528
  251. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScanSycl.h +0 -513
  252. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorShuffling.h +0 -471
  253. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStorage.h +0 -161
  254. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStriding.h +0 -346
  255. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTrace.h +0 -303
  256. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTraits.h +0 -264
  257. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorUInt128.h +0 -249
  258. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorVolumePatch.h +0 -629
  259. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/DynamicSymmetry.h +0 -293
  260. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/StaticSymmetry.h +0 -236
  261. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/Symmetry.h +0 -338
  262. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/util/TemplateGroupTheory.h +0 -669
  263. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/Barrier.h +0 -67
  264. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/EventCount.h +0 -249
  265. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/NonBlockingThreadPool.h +0 -486
  266. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/RunQueue.h +0 -236
  267. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadCancel.h +0 -23
  268. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadEnvironment.h +0 -40
  269. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadLocal.h +0 -301
  270. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadPoolInterface.h +0 -48
  271. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadYield.h +0 -20
  272. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Meta.h +0 -537
  273. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Workarounds.h +0 -88
  274. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/EmulateArray.h +0 -261
  275. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/MaxSizeVector.h +0 -158
  276. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffJacobian.h +0 -108
  277. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffScalar.h +0 -730
  278. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffVector.h +0 -220
  279. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/BVAlgorithms.h +0 -293
  280. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/KdBVH.h +0 -223
  281. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Eigenvalues/ArpackSelfAdjointEigenSolver.h +0 -790
  282. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerAngles.h +0 -355
  283. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerSystem.h +0 -305
  284. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_fftw_impl.h +0 -261
  285. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_kissfft_impl.h +0 -449
  286. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h +0 -187
  287. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/DGMRES.h +0 -511
  288. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/GMRES.h +0 -335
  289. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IDRS.h +0 -436
  290. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IncompleteLU.h +0 -90
  291. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IterationController.h +0 -154
  292. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/MINRES.h +0 -267
  293. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/Scaling.h +0 -193
  294. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h +0 -305
  295. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMcovar.h +0 -84
  296. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMonestep.h +0 -202
  297. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMpar.h +0 -160
  298. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMqrsolv.h +0 -188
  299. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  300. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  301. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  302. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  303. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  304. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  305. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  306. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  307. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  308. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  309. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  310. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  311. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  312. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  313. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  314. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  315. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  316. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  317. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  318. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  319. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  320. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  321. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  322. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  323. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  324. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  325. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  326. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  327. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  328. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  329. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  330. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  331. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  332. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  333. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  334. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  335. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  336. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  337. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  338. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  339. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  340. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  341. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  342. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  343. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  344. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  345. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  346. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  347. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  348. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  349. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  350. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  351. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  352. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  353. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  354. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  355. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  356. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  357. sequenzo-0.1.18.dist-info/RECORD +0 -544
  358. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/WHEEL +0 -0
  359. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/licenses/LICENSE +0 -0
  360. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/top_level.txt +0 -0
@@ -1,513 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Mehdi Goli Codeplay Software Ltd.
5
- // Ralph Potter Codeplay Software Ltd.
6
- // Luke Iwanski Codeplay Software Ltd.
7
- // Contact: <eigen@codeplay.com>
8
- //
9
- // This Source Code Form is subject to the terms of the Mozilla
10
- // Public License v. 2.0. If a copy of the MPL was not distributed
11
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
12
-
13
- /*****************************************************************
14
- * TensorScanSycl.h
15
- *
16
- * \brief:
17
- * Tensor Scan Sycl implement the extend version of
18
- * "Efficient parallel scan algorithms for GPUs." .for Tensor operations.
19
- * The algorithm requires up to 3 stage (consequently 3 kernels) depending on
20
- * the size of the tensor. In the first kernel (ScanKernelFunctor), each
21
- * threads within the work-group individually reduces the allocated elements per
22
- * thread in order to reduces the total number of blocks. In the next step all
23
- * thread within the work-group will reduce the associated blocks into the
24
- * temporary buffers. In the next kernel(ScanBlockKernelFunctor), the temporary
25
- * buffer is given as an input and all the threads within a work-group scan and
26
- * reduces the boundaries between the blocks (generated from the previous
27
- * kernel). and write the data on the temporary buffer. If the second kernel is
28
- * required, the third and final kerenl (ScanAdjustmentKernelFunctor) will
29
- * adjust the final result into the output buffer.
30
- * The original algorithm for the parallel prefix sum can be found here:
31
- *
32
- * Sengupta, Shubhabrata, Mark Harris, and Michael Garland. "Efficient parallel
33
- * scan algorithms for GPUs." NVIDIA, Santa Clara, CA, Tech. Rep. NVR-2008-003
34
- *1, no. 1 (2008): 1-17.
35
- *****************************************************************/
36
-
37
- #ifndef UNSUPPORTED_EIGEN_CXX11_SRC_TENSOR_TENSOR_SYCL_SYCL_HPP
38
- #define UNSUPPORTED_EIGEN_CXX11_SRC_TENSOR_TENSOR_SYCL_SYCL_HPP
39
-
40
- namespace Eigen {
41
- namespace TensorSycl {
42
- namespace internal {
43
-
44
- #ifndef EIGEN_SYCL_MAX_GLOBAL_RANGE
45
- #define EIGEN_SYCL_MAX_GLOBAL_RANGE (EIGEN_SYCL_LOCAL_THREAD_DIM0 * EIGEN_SYCL_LOCAL_THREAD_DIM1 * 4)
46
- #endif
47
-
48
- template <typename index_t>
49
- struct ScanParameters {
50
- // must be power of 2
51
- static EIGEN_CONSTEXPR index_t ScanPerThread = 8;
52
- const index_t total_size;
53
- const index_t non_scan_size;
54
- const index_t scan_size;
55
- const index_t non_scan_stride;
56
- const index_t scan_stride;
57
- const index_t panel_threads;
58
- const index_t group_threads;
59
- const index_t block_threads;
60
- const index_t elements_per_group;
61
- const index_t elements_per_block;
62
- const index_t loop_range;
63
-
64
- ScanParameters(index_t total_size_, index_t non_scan_size_, index_t scan_size_, index_t non_scan_stride_,
65
- index_t scan_stride_, index_t panel_threads_, index_t group_threads_, index_t block_threads_,
66
- index_t elements_per_group_, index_t elements_per_block_, index_t loop_range_)
67
- : total_size(total_size_),
68
- non_scan_size(non_scan_size_),
69
- scan_size(scan_size_),
70
- non_scan_stride(non_scan_stride_),
71
- scan_stride(scan_stride_),
72
- panel_threads(panel_threads_),
73
- group_threads(group_threads_),
74
- block_threads(block_threads_),
75
- elements_per_group(elements_per_group_),
76
- elements_per_block(elements_per_block_),
77
- loop_range(loop_range_) {}
78
- };
79
-
80
- enum class scan_step { first, second };
81
- template <typename Evaluator, typename CoeffReturnType, typename OutAccessor, typename Op, typename Index,
82
- scan_step stp>
83
- struct ScanKernelFunctor {
84
- typedef cl::sycl::accessor<CoeffReturnType, 1, cl::sycl::access::mode::read_write, cl::sycl::access::target::local>
85
- LocalAccessor;
86
- static EIGEN_CONSTEXPR int PacketSize = ScanParameters<Index>::ScanPerThread / 2;
87
-
88
- LocalAccessor scratch;
89
- Evaluator dev_eval;
90
- OutAccessor out_accessor;
91
- OutAccessor temp_accessor;
92
- const ScanParameters<Index> scanParameters;
93
- Op accumulator;
94
- const bool inclusive;
95
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE ScanKernelFunctor(LocalAccessor scratch_, const Evaluator dev_eval_,
96
- OutAccessor out_accessor_, OutAccessor temp_accessor_,
97
- const ScanParameters<Index> scanParameters_, Op accumulator_,
98
- const bool inclusive_)
99
- : scratch(scratch_),
100
- dev_eval(dev_eval_),
101
- out_accessor(out_accessor_),
102
- temp_accessor(temp_accessor_),
103
- scanParameters(scanParameters_),
104
- accumulator(accumulator_),
105
- inclusive(inclusive_) {}
106
-
107
- template <scan_step sst = stp, typename Input>
108
- typename ::Eigen::internal::enable_if<sst == scan_step::first, CoeffReturnType>::type EIGEN_DEVICE_FUNC
109
- EIGEN_STRONG_INLINE
110
- read(const Input &inpt, Index global_id) {
111
- return inpt.coeff(global_id);
112
- }
113
-
114
- template <scan_step sst = stp, typename Input>
115
- typename ::Eigen::internal::enable_if<sst != scan_step::first, CoeffReturnType>::type EIGEN_DEVICE_FUNC
116
- EIGEN_STRONG_INLINE
117
- read(const Input &inpt, Index global_id) {
118
- return inpt[global_id];
119
- }
120
-
121
- template <scan_step sst = stp, typename InclusiveOp>
122
- typename ::Eigen::internal::enable_if<sst == scan_step::first>::type EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
123
- first_step_inclusive_Operation(InclusiveOp inclusive_op) {
124
- inclusive_op();
125
- }
126
-
127
- template <scan_step sst = stp, typename InclusiveOp>
128
- typename ::Eigen::internal::enable_if<sst != scan_step::first>::type EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
129
- first_step_inclusive_Operation(InclusiveOp) {}
130
-
131
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void operator()(cl::sycl::nd_item<1> itemID) {
132
- auto out_ptr = out_accessor.get_pointer();
133
- auto tmp_ptr = temp_accessor.get_pointer();
134
- auto scratch_ptr = scratch.get_pointer().get();
135
-
136
- for (Index loop_offset = 0; loop_offset < scanParameters.loop_range; loop_offset++) {
137
- Index data_offset = (itemID.get_global_id(0) + (itemID.get_global_range(0) * loop_offset));
138
- Index tmp = data_offset % scanParameters.panel_threads;
139
- const Index panel_id = data_offset / scanParameters.panel_threads;
140
- const Index group_id = tmp / scanParameters.group_threads;
141
- tmp = tmp % scanParameters.group_threads;
142
- const Index block_id = tmp / scanParameters.block_threads;
143
- const Index local_id = tmp % scanParameters.block_threads;
144
- // we put one element per packet in scratch_mem
145
- const Index scratch_stride = scanParameters.elements_per_block / PacketSize;
146
- const Index scratch_offset = (itemID.get_local_id(0) / scanParameters.block_threads) * scratch_stride;
147
- CoeffReturnType private_scan[ScanParameters<Index>::ScanPerThread];
148
- CoeffReturnType inclusive_scan;
149
- // the actual panel size is scan_size * non_scan_size.
150
- // elements_per_panel is roundup to power of 2 for binary tree
151
- const Index panel_offset = panel_id * scanParameters.scan_size * scanParameters.non_scan_size;
152
- const Index group_offset = group_id * scanParameters.non_scan_stride;
153
- // This will be effective when the size is bigger than elements_per_block
154
- const Index block_offset = block_id * scanParameters.elements_per_block * scanParameters.scan_stride;
155
- const Index thread_offset = (ScanParameters<Index>::ScanPerThread * local_id * scanParameters.scan_stride);
156
- const Index global_offset = panel_offset + group_offset + block_offset + thread_offset;
157
- Index next_elements = 0;
158
- EIGEN_UNROLL_LOOP
159
- for (int i = 0; i < ScanParameters<Index>::ScanPerThread; i++) {
160
- Index global_id = global_offset + next_elements;
161
- private_scan[i] = ((((block_id * scanParameters.elements_per_block) +
162
- (ScanParameters<Index>::ScanPerThread * local_id) + i) < scanParameters.scan_size) &&
163
- (global_id < scanParameters.total_size))
164
- ? read(dev_eval, global_id)
165
- : accumulator.initialize();
166
- next_elements += scanParameters.scan_stride;
167
- }
168
- first_step_inclusive_Operation([&]() EIGEN_DEVICE_FUNC {
169
- if (inclusive) {
170
- inclusive_scan = private_scan[ScanParameters<Index>::ScanPerThread - 1];
171
- }
172
- });
173
- // This for loop must be 2
174
- EIGEN_UNROLL_LOOP
175
- for (int packetIndex = 0; packetIndex < ScanParameters<Index>::ScanPerThread; packetIndex += PacketSize) {
176
- Index private_offset = 1;
177
- // build sum in place up the tree
178
- EIGEN_UNROLL_LOOP
179
- for (Index d = PacketSize >> 1; d > 0; d >>= 1) {
180
- EIGEN_UNROLL_LOOP
181
- for (Index l = 0; l < d; l++) {
182
- Index ai = private_offset * (2 * l + 1) - 1 + packetIndex;
183
- Index bi = private_offset * (2 * l + 2) - 1 + packetIndex;
184
- CoeffReturnType accum = accumulator.initialize();
185
- accumulator.reduce(private_scan[ai], &accum);
186
- accumulator.reduce(private_scan[bi], &accum);
187
- private_scan[bi] = accumulator.finalize(accum);
188
- }
189
- private_offset *= 2;
190
- }
191
- scratch_ptr[2 * local_id + (packetIndex / PacketSize) + scratch_offset] =
192
- private_scan[PacketSize - 1 + packetIndex];
193
- private_scan[PacketSize - 1 + packetIndex] = accumulator.initialize();
194
- // traverse down tree & build scan
195
- EIGEN_UNROLL_LOOP
196
- for (Index d = 1; d < PacketSize; d *= 2) {
197
- private_offset >>= 1;
198
- EIGEN_UNROLL_LOOP
199
- for (Index l = 0; l < d; l++) {
200
- Index ai = private_offset * (2 * l + 1) - 1 + packetIndex;
201
- Index bi = private_offset * (2 * l + 2) - 1 + packetIndex;
202
- CoeffReturnType accum = accumulator.initialize();
203
- accumulator.reduce(private_scan[ai], &accum);
204
- accumulator.reduce(private_scan[bi], &accum);
205
- private_scan[ai] = private_scan[bi];
206
- private_scan[bi] = accumulator.finalize(accum);
207
- }
208
- }
209
- }
210
-
211
- Index offset = 1;
212
- // build sum in place up the tree
213
- for (Index d = scratch_stride >> 1; d > 0; d >>= 1) {
214
- // Synchronise
215
- itemID.barrier(cl::sycl::access::fence_space::local_space);
216
- if (local_id < d) {
217
- Index ai = offset * (2 * local_id + 1) - 1 + scratch_offset;
218
- Index bi = offset * (2 * local_id + 2) - 1 + scratch_offset;
219
- CoeffReturnType accum = accumulator.initialize();
220
- accumulator.reduce(scratch_ptr[ai], &accum);
221
- accumulator.reduce(scratch_ptr[bi], &accum);
222
- scratch_ptr[bi] = accumulator.finalize(accum);
223
- }
224
- offset *= 2;
225
- }
226
- // Synchronise
227
- itemID.barrier(cl::sycl::access::fence_space::local_space);
228
- // next step optimisation
229
- if (local_id == 0) {
230
- if (((scanParameters.elements_per_group / scanParameters.elements_per_block) > 1)) {
231
- const Index temp_id = panel_id * (scanParameters.elements_per_group / scanParameters.elements_per_block) *
232
- scanParameters.non_scan_size +
233
- group_id * (scanParameters.elements_per_group / scanParameters.elements_per_block) +
234
- block_id;
235
- tmp_ptr[temp_id] = scratch_ptr[scratch_stride - 1 + scratch_offset];
236
- }
237
- // clear the last element
238
- scratch_ptr[scratch_stride - 1 + scratch_offset] = accumulator.initialize();
239
- }
240
- // traverse down tree & build scan
241
- for (Index d = 1; d < scratch_stride; d *= 2) {
242
- offset >>= 1;
243
- // Synchronise
244
- itemID.barrier(cl::sycl::access::fence_space::local_space);
245
- if (local_id < d) {
246
- Index ai = offset * (2 * local_id + 1) - 1 + scratch_offset;
247
- Index bi = offset * (2 * local_id + 2) - 1 + scratch_offset;
248
- CoeffReturnType accum = accumulator.initialize();
249
- accumulator.reduce(scratch_ptr[ai], &accum);
250
- accumulator.reduce(scratch_ptr[bi], &accum);
251
- scratch_ptr[ai] = scratch_ptr[bi];
252
- scratch_ptr[bi] = accumulator.finalize(accum);
253
- }
254
- }
255
- // Synchronise
256
- itemID.barrier(cl::sycl::access::fence_space::local_space);
257
- // This for loop must be 2
258
- EIGEN_UNROLL_LOOP
259
- for (int packetIndex = 0; packetIndex < ScanParameters<Index>::ScanPerThread; packetIndex += PacketSize) {
260
- EIGEN_UNROLL_LOOP
261
- for (Index i = 0; i < PacketSize; i++) {
262
- CoeffReturnType accum = private_scan[packetIndex + i];
263
- accumulator.reduce(scratch_ptr[2 * local_id + (packetIndex / PacketSize) + scratch_offset], &accum);
264
- private_scan[packetIndex + i] = accumulator.finalize(accum);
265
- }
266
- }
267
- first_step_inclusive_Operation([&]() EIGEN_DEVICE_FUNC {
268
- if (inclusive) {
269
- accumulator.reduce(private_scan[ScanParameters<Index>::ScanPerThread - 1], &inclusive_scan);
270
- private_scan[0] = accumulator.finalize(inclusive_scan);
271
- }
272
- });
273
- next_elements = 0;
274
- // right the first set of private param
275
- EIGEN_UNROLL_LOOP
276
- for (Index i = 0; i < ScanParameters<Index>::ScanPerThread; i++) {
277
- Index global_id = global_offset + next_elements;
278
- if ((((block_id * scanParameters.elements_per_block) + (ScanParameters<Index>::ScanPerThread * local_id) + i) <
279
- scanParameters.scan_size) &&
280
- (global_id < scanParameters.total_size)) {
281
- Index private_id = (i * !inclusive) + (((i + 1) % ScanParameters<Index>::ScanPerThread) * (inclusive));
282
- out_ptr[global_id] = private_scan[private_id];
283
- }
284
- next_elements += scanParameters.scan_stride;
285
- }
286
- } // end for loop
287
- }
288
- };
289
-
290
- template <typename CoeffReturnType, typename InAccessor, typename OutAccessor, typename Op, typename Index>
291
- struct ScanAdjustmentKernelFunctor {
292
- typedef cl::sycl::accessor<CoeffReturnType, 1, cl::sycl::access::mode::read_write, cl::sycl::access::target::local>
293
- LocalAccessor;
294
- static EIGEN_CONSTEXPR int PacketSize = ScanParameters<Index>::ScanPerThread / 2;
295
- InAccessor in_accessor;
296
- OutAccessor out_accessor;
297
- const ScanParameters<Index> scanParameters;
298
- Op accumulator;
299
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE ScanAdjustmentKernelFunctor(LocalAccessor, InAccessor in_accessor_,
300
- OutAccessor out_accessor_,
301
- const ScanParameters<Index> scanParameters_,
302
- Op accumulator_)
303
- : in_accessor(in_accessor_),
304
- out_accessor(out_accessor_),
305
- scanParameters(scanParameters_),
306
- accumulator(accumulator_) {}
307
-
308
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void operator()(cl::sycl::nd_item<1> itemID) {
309
- auto in_ptr = in_accessor.get_pointer();
310
- auto out_ptr = out_accessor.get_pointer();
311
-
312
- for (Index loop_offset = 0; loop_offset < scanParameters.loop_range; loop_offset++) {
313
- Index data_offset = (itemID.get_global_id(0) + (itemID.get_global_range(0) * loop_offset));
314
- Index tmp = data_offset % scanParameters.panel_threads;
315
- const Index panel_id = data_offset / scanParameters.panel_threads;
316
- const Index group_id = tmp / scanParameters.group_threads;
317
- tmp = tmp % scanParameters.group_threads;
318
- const Index block_id = tmp / scanParameters.block_threads;
319
- const Index local_id = tmp % scanParameters.block_threads;
320
-
321
- // the actual panel size is scan_size * non_scan_size.
322
- // elements_per_panel is roundup to power of 2 for binary tree
323
- const Index panel_offset = panel_id * scanParameters.scan_size * scanParameters.non_scan_size;
324
- const Index group_offset = group_id * scanParameters.non_scan_stride;
325
- // This will be effective when the size is bigger than elements_per_block
326
- const Index block_offset = block_id * scanParameters.elements_per_block * scanParameters.scan_stride;
327
- const Index thread_offset = ScanParameters<Index>::ScanPerThread * local_id * scanParameters.scan_stride;
328
-
329
- const Index global_offset = panel_offset + group_offset + block_offset + thread_offset;
330
- const Index block_size = scanParameters.elements_per_group / scanParameters.elements_per_block;
331
- const Index in_id = (panel_id * block_size * scanParameters.non_scan_size) + (group_id * block_size) + block_id;
332
- CoeffReturnType adjust_val = in_ptr[in_id];
333
-
334
- Index next_elements = 0;
335
- EIGEN_UNROLL_LOOP
336
- for (Index i = 0; i < ScanParameters<Index>::ScanPerThread; i++) {
337
- Index global_id = global_offset + next_elements;
338
- if ((((block_id * scanParameters.elements_per_block) + (ScanParameters<Index>::ScanPerThread * local_id) + i) <
339
- scanParameters.scan_size) &&
340
- (global_id < scanParameters.total_size)) {
341
- CoeffReturnType accum = adjust_val;
342
- accumulator.reduce(out_ptr[global_id], &accum);
343
- out_ptr[global_id] = accumulator.finalize(accum);
344
- }
345
- next_elements += scanParameters.scan_stride;
346
- }
347
- }
348
- }
349
- };
350
-
351
- template <typename Index>
352
- struct ScanInfo {
353
- const Index &total_size;
354
- const Index &scan_size;
355
- const Index &panel_size;
356
- const Index &non_scan_size;
357
- const Index &scan_stride;
358
- const Index &non_scan_stride;
359
-
360
- Index max_elements_per_block;
361
- Index block_size;
362
- Index panel_threads;
363
- Index group_threads;
364
- Index block_threads;
365
- Index elements_per_group;
366
- Index elements_per_block;
367
- Index loop_range;
368
- Index global_range;
369
- Index local_range;
370
- const Eigen::SyclDevice &dev;
371
- EIGEN_STRONG_INLINE ScanInfo(const Index &total_size_, const Index &scan_size_, const Index &panel_size_,
372
- const Index &non_scan_size_, const Index &scan_stride_, const Index &non_scan_stride_,
373
- const Eigen::SyclDevice &dev_)
374
- : total_size(total_size_),
375
- scan_size(scan_size_),
376
- panel_size(panel_size_),
377
- non_scan_size(non_scan_size_),
378
- scan_stride(scan_stride_),
379
- non_scan_stride(non_scan_stride_),
380
- dev(dev_) {
381
- // must be power of 2
382
- local_range = std::min(Index(dev.getNearestPowerOfTwoWorkGroupSize()),
383
- Index(EIGEN_SYCL_LOCAL_THREAD_DIM0 * EIGEN_SYCL_LOCAL_THREAD_DIM1));
384
-
385
- max_elements_per_block = local_range * ScanParameters<Index>::ScanPerThread;
386
-
387
- elements_per_group =
388
- dev.getPowerOfTwo(Index(roundUp(Index(scan_size), ScanParameters<Index>::ScanPerThread)), true);
389
- const Index elements_per_panel = elements_per_group * non_scan_size;
390
- elements_per_block = std::min(Index(elements_per_group), Index(max_elements_per_block));
391
- panel_threads = elements_per_panel / ScanParameters<Index>::ScanPerThread;
392
- group_threads = elements_per_group / ScanParameters<Index>::ScanPerThread;
393
- block_threads = elements_per_block / ScanParameters<Index>::ScanPerThread;
394
- block_size = elements_per_group / elements_per_block;
395
- #ifdef EIGEN_SYCL_MAX_GLOBAL_RANGE
396
- const Index max_threads = std::min(Index(panel_threads * panel_size), Index(EIGEN_SYCL_MAX_GLOBAL_RANGE));
397
- #else
398
- const Index max_threads = panel_threads * panel_size;
399
- #endif
400
- global_range = roundUp(max_threads, local_range);
401
- loop_range = Index(
402
- std::ceil(double(elements_per_panel * panel_size) / (global_range * ScanParameters<Index>::ScanPerThread)));
403
- }
404
- inline ScanParameters<Index> get_scan_parameter() {
405
- return ScanParameters<Index>(total_size, non_scan_size, scan_size, non_scan_stride, scan_stride, panel_threads,
406
- group_threads, block_threads, elements_per_group, elements_per_block, loop_range);
407
- }
408
- inline cl::sycl::nd_range<1> get_thread_range() {
409
- return cl::sycl::nd_range<1>(cl::sycl::range<1>(global_range), cl::sycl::range<1>(local_range));
410
- }
411
- };
412
-
413
- template <typename EvaluatorPointerType, typename CoeffReturnType, typename Reducer, typename Index>
414
- struct SYCLAdjustBlockOffset {
415
- EIGEN_STRONG_INLINE static void adjust_scan_block_offset(EvaluatorPointerType in_ptr, EvaluatorPointerType out_ptr,
416
- Reducer &accumulator, const Index total_size,
417
- const Index scan_size, const Index panel_size,
418
- const Index non_scan_size, const Index scan_stride,
419
- const Index non_scan_stride, const Eigen::SyclDevice &dev) {
420
- auto scan_info =
421
- ScanInfo<Index>(total_size, scan_size, panel_size, non_scan_size, scan_stride, non_scan_stride, dev);
422
-
423
- typedef ScanAdjustmentKernelFunctor<CoeffReturnType, EvaluatorPointerType, EvaluatorPointerType, Reducer, Index>
424
- AdjustFuctor;
425
- dev.template unary_kernel_launcher<CoeffReturnType, AdjustFuctor>(in_ptr, out_ptr, scan_info.get_thread_range(),
426
- scan_info.max_elements_per_block,
427
- scan_info.get_scan_parameter(), accumulator);
428
- }
429
- };
430
-
431
- template <typename CoeffReturnType, scan_step stp>
432
- struct ScanLauncher_impl {
433
- template <typename Input, typename EvaluatorPointerType, typename Reducer, typename Index>
434
- EIGEN_STRONG_INLINE static void scan_block(Input in_ptr, EvaluatorPointerType out_ptr, Reducer &accumulator,
435
- const Index total_size, const Index scan_size, const Index panel_size,
436
- const Index non_scan_size, const Index scan_stride,
437
- const Index non_scan_stride, const bool inclusive,
438
- const Eigen::SyclDevice &dev) {
439
- auto scan_info =
440
- ScanInfo<Index>(total_size, scan_size, panel_size, non_scan_size, scan_stride, non_scan_stride, dev);
441
- const Index temp_pointer_size = scan_info.block_size * non_scan_size * panel_size;
442
- const Index scratch_size = scan_info.max_elements_per_block / (ScanParameters<Index>::ScanPerThread / 2);
443
- CoeffReturnType *temp_pointer =
444
- static_cast<CoeffReturnType *>(dev.allocate_temp(temp_pointer_size * sizeof(CoeffReturnType)));
445
- EvaluatorPointerType tmp_global_accessor = dev.get(temp_pointer);
446
-
447
- typedef ScanKernelFunctor<Input, CoeffReturnType, EvaluatorPointerType, Reducer, Index, stp> ScanFunctor;
448
- dev.template binary_kernel_launcher<CoeffReturnType, ScanFunctor>(
449
- in_ptr, out_ptr, tmp_global_accessor, scan_info.get_thread_range(), scratch_size,
450
- scan_info.get_scan_parameter(), accumulator, inclusive);
451
-
452
- if (scan_info.block_size > 1) {
453
- ScanLauncher_impl<CoeffReturnType, scan_step::second>::scan_block(
454
- tmp_global_accessor, tmp_global_accessor, accumulator, temp_pointer_size, scan_info.block_size, panel_size,
455
- non_scan_size, Index(1), scan_info.block_size, false, dev);
456
-
457
- SYCLAdjustBlockOffset<EvaluatorPointerType, CoeffReturnType, Reducer, Index>::adjust_scan_block_offset(
458
- tmp_global_accessor, out_ptr, accumulator, total_size, scan_size, panel_size, non_scan_size, scan_stride,
459
- non_scan_stride, dev);
460
- }
461
- dev.deallocate_temp(temp_pointer);
462
- }
463
- };
464
-
465
- } // namespace internal
466
- } // namespace TensorSycl
467
- namespace internal {
468
- template <typename Self, typename Reducer, bool vectorize>
469
- struct ScanLauncher<Self, Reducer, Eigen::SyclDevice, vectorize> {
470
- typedef typename Self::Index Index;
471
- typedef typename Self::CoeffReturnType CoeffReturnType;
472
- typedef typename Self::Storage Storage;
473
- typedef typename Self::EvaluatorPointerType EvaluatorPointerType;
474
- void operator()(Self &self, EvaluatorPointerType data) {
475
- const Index total_size = internal::array_prod(self.dimensions());
476
- const Index scan_size = self.size();
477
- const Index scan_stride = self.stride();
478
- // this is the scan op (can be sum or ...)
479
- auto accumulator = self.accumulator();
480
- auto inclusive = !self.exclusive();
481
- auto consume_dim = self.consume_dim();
482
- auto dev = self.device();
483
-
484
- auto dims = self.inner().dimensions();
485
-
486
- Index non_scan_size = 1;
487
- Index panel_size = 1;
488
- if (static_cast<int>(Self::Layout) == static_cast<int>(ColMajor)) {
489
- for (int i = 0; i < consume_dim; i++) {
490
- non_scan_size *= dims[i];
491
- }
492
- for (int i = consume_dim + 1; i < Self::NumDims; i++) {
493
- panel_size *= dims[i];
494
- }
495
- } else {
496
- for (int i = Self::NumDims - 1; i > consume_dim; i--) {
497
- non_scan_size *= dims[i];
498
- }
499
- for (int i = consume_dim - 1; i >= 0; i--) {
500
- panel_size *= dims[i];
501
- }
502
- }
503
- const Index non_scan_stride = (scan_stride > 1) ? 1 : scan_size;
504
- auto eval_impl = self.inner();
505
- TensorSycl::internal::ScanLauncher_impl<CoeffReturnType, TensorSycl::internal::scan_step::first>::scan_block(
506
- eval_impl, data, accumulator, total_size, scan_size, panel_size, non_scan_size, scan_stride, non_scan_stride,
507
- inclusive, dev);
508
- }
509
- };
510
- } // namespace internal
511
- } // namespace Eigen
512
-
513
- #endif // UNSUPPORTED_EIGEN_CXX11_SRC_TENSOR_TENSOR_SYCL_SYCL_HPP