sequenzo 0.1.18__cp312-cp312-macosx_10_13_universal2.whl → 0.1.19__cp312-cp312-macosx_10_13_universal2.whl

sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke_mangling.h

@@ -1,17 +0,0 @@
-#ifndef LAPACK_HEADER_INCLUDED
-#define LAPACK_HEADER_INCLUDED
-
-#ifndef LAPACK_GLOBAL
-#if defined(LAPACK_GLOBAL_PATTERN_LC) || defined(ADD_)
-#define LAPACK_GLOBAL(lcname,UCNAME)  lcname##_
-#elif defined(LAPACK_GLOBAL_PATTERN_UC) || defined(UPPER)
-#define LAPACK_GLOBAL(lcname,UCNAME)  UCNAME
-#elif defined(LAPACK_GLOBAL_PATTERN_MC) || defined(NOCHANGE)
-#define LAPACK_GLOBAL(lcname,UCNAME)  lcname
-#else
-#define LAPACK_GLOBAL(lcname,UCNAME)  lcname##_
-#endif
-#endif
-
-#endif
-

sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h

@@ -1,358 +0,0 @@
-
-/** \returns an expression of the coefficient wise product of \c *this and \a other
-  *
-  * \sa MatrixBase::cwiseProduct
-  */
-template<typename OtherDerived>
-EIGEN_DEVICE_FUNC
-EIGEN_STRONG_INLINE const EIGEN_CWISE_BINARY_RETURN_TYPE(Derived,OtherDerived,product)
-operator*(const EIGEN_CURRENT_STORAGE_BASE_CLASS<OtherDerived> &other) const
-{
-  return EIGEN_CWISE_BINARY_RETURN_TYPE(Derived,OtherDerived,product)(derived(), other.derived());
-}
-
-/** \returns an expression of the coefficient wise quotient of \c *this and \a other
-  *
-  * \sa MatrixBase::cwiseQuotient
-  */
-template<typename OtherDerived>
-EIGEN_DEVICE_FUNC
-EIGEN_STRONG_INLINE const CwiseBinaryOp<internal::scalar_quotient_op<Scalar,typename OtherDerived::Scalar>, const Derived, const OtherDerived>
-operator/(const EIGEN_CURRENT_STORAGE_BASE_CLASS<OtherDerived> &other) const
-{
-  return CwiseBinaryOp<internal::scalar_quotient_op<Scalar,typename OtherDerived::Scalar>, const Derived, const OtherDerived>(derived(), other.derived());
-}
-
-/** \returns an expression of the coefficient-wise min of \c *this and \a other
-  *
-  * Example: \include Cwise_min.cpp
-  * Output: \verbinclude Cwise_min.out
-  *
-  * \sa max()
-  */
-EIGEN_MAKE_CWISE_BINARY_OP(min,min)
-
-/** \returns an expression of the coefficient-wise min of \c *this and scalar \a other
-  *
-  * \sa max()
-  */
-EIGEN_DEVICE_FUNC
-EIGEN_STRONG_INLINE const CwiseBinaryOp<internal::scalar_min_op<Scalar,Scalar>, const Derived,
-                                        const CwiseNullaryOp<internal::scalar_constant_op<Scalar>, PlainObject> >
-#ifdef EIGEN_PARSED_BY_DOXYGEN
-min
-#else
-(min)
-#endif
-(const Scalar &other) const
-{
-  return (min)(Derived::PlainObject::Constant(rows(), cols(), other));
-}
-
-/** \returns an expression of the coefficient-wise max of \c *this and \a other
-  *
-  * Example: \include Cwise_max.cpp
-  * Output: \verbinclude Cwise_max.out
-  *
-  * \sa min()
-  */
-EIGEN_MAKE_CWISE_BINARY_OP(max,max)
-
-/** \returns an expression of the coefficient-wise max of \c *this and scalar \a other
-  *
-  * \sa min()
-  */
-EIGEN_DEVICE_FUNC
-EIGEN_STRONG_INLINE const CwiseBinaryOp<internal::scalar_max_op<Scalar,Scalar>, const Derived,
-                                        const CwiseNullaryOp<internal::scalar_constant_op<Scalar>, PlainObject> >
-#ifdef EIGEN_PARSED_BY_DOXYGEN
-max
-#else
-(max)
-#endif
-(const Scalar &other) const
-{
-  return (max)(Derived::PlainObject::Constant(rows(), cols(), other));
-}
-
-/** \returns an expression of the coefficient-wise absdiff of \c *this and \a other
-  *
-  * Example: \include Cwise_absolute_difference.cpp
-  * Output: \verbinclude Cwise_absolute_difference.out
-  *
-  * \sa absolute_difference()
-  */
-EIGEN_MAKE_CWISE_BINARY_OP(absolute_difference,absolute_difference)
-
-/** \returns an expression of the coefficient-wise absolute_difference of \c *this and scalar \a other
-  *
-  * \sa absolute_difference()
-  */
-EIGEN_DEVICE_FUNC
-EIGEN_STRONG_INLINE const CwiseBinaryOp<internal::scalar_absolute_difference_op<Scalar,Scalar>, const Derived,
-                                        const CwiseNullaryOp<internal::scalar_constant_op<Scalar>, PlainObject> >
-#ifdef EIGEN_PARSED_BY_DOXYGEN
-absolute_difference
-#else
-(absolute_difference)
-#endif
-(const Scalar &other) const
-{
-  return (absolute_difference)(Derived::PlainObject::Constant(rows(), cols(), other));
-}
-
-/** \returns an expression of the coefficient-wise power of \c *this to the given array of \a exponents.
-  *
-  * This function computes the coefficient-wise power.
-  *
-  * Example: \include Cwise_array_power_array.cpp
-  * Output: \verbinclude Cwise_array_power_array.out
-  */
-EIGEN_MAKE_CWISE_BINARY_OP(pow,pow)
-
-#ifndef EIGEN_PARSED_BY_DOXYGEN
-EIGEN_MAKE_SCALAR_BINARY_OP_ONTHERIGHT(pow,pow)
-#else
-/** \returns an expression of the coefficients of \c *this rasied to the constant power \a exponent
-  *
-  * \tparam T is the scalar type of \a exponent. It must be compatible with the scalar type of the given expression.
-  *
-  * This function computes the coefficient-wise power. The function MatrixBase::pow() in the
-  * unsupported module MatrixFunctions computes the matrix power.
-  *
-  * Example: \include Cwise_pow.cpp
-  * Output: \verbinclude Cwise_pow.out
-  *
-  * \sa ArrayBase::pow(ArrayBase), square(), cube(), exp(), log()
-  */
-template<typename T>
-const CwiseBinaryOp<internal::scalar_pow_op<Scalar,T>,Derived,Constant<T> > pow(const T& exponent) const;
-#endif
-
-
-// TODO code generating macros could be moved to Macros.h and could include generation of documentation
-#define EIGEN_MAKE_CWISE_COMP_OP(OP, COMPARATOR) \
-template<typename OtherDerived> \
-EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const CwiseBinaryOp<internal::scalar_cmp_op<Scalar, typename OtherDerived::Scalar, internal::cmp_ ## COMPARATOR>, const Derived, const OtherDerived> \
-OP(const EIGEN_CURRENT_STORAGE_BASE_CLASS<OtherDerived> &other) const \
-{ \
-  return CwiseBinaryOp<internal::scalar_cmp_op<Scalar, typename OtherDerived::Scalar, internal::cmp_ ## COMPARATOR>, const Derived, const OtherDerived>(derived(), other.derived()); \
-}\
-typedef CwiseBinaryOp<internal::scalar_cmp_op<Scalar,Scalar, internal::cmp_ ## COMPARATOR>, const Derived, const CwiseNullaryOp<internal::scalar_constant_op<Scalar>, PlainObject> > Cmp ## COMPARATOR ## ReturnType; \
-typedef CwiseBinaryOp<internal::scalar_cmp_op<Scalar,Scalar, internal::cmp_ ## COMPARATOR>, const CwiseNullaryOp<internal::scalar_constant_op<Scalar>, PlainObject>, const Derived > RCmp ## COMPARATOR ## ReturnType; \
-EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Cmp ## COMPARATOR ## ReturnType \
-OP(const Scalar& s) const { \
-  return this->OP(Derived::PlainObject::Constant(rows(), cols(), s)); \
-} \
-EIGEN_DEVICE_FUNC friend EIGEN_STRONG_INLINE const RCmp ## COMPARATOR ## ReturnType \
-OP(const Scalar& s, const EIGEN_CURRENT_STORAGE_BASE_CLASS<Derived>& d) { \
-  return Derived::PlainObject::Constant(d.rows(), d.cols(), s).OP(d); \
-}
-
-#define EIGEN_MAKE_CWISE_COMP_R_OP(OP, R_OP, RCOMPARATOR) \
-template<typename OtherDerived> \
-EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const CwiseBinaryOp<internal::scalar_cmp_op<typename OtherDerived::Scalar, Scalar, internal::cmp_##RCOMPARATOR>, const OtherDerived, const Derived> \
-OP(const EIGEN_CURRENT_STORAGE_BASE_CLASS<OtherDerived> &other) const \
-{ \
-  return CwiseBinaryOp<internal::scalar_cmp_op<typename OtherDerived::Scalar, Scalar, internal::cmp_##RCOMPARATOR>, const OtherDerived, const Derived>(other.derived(), derived()); \
-} \
-EIGEN_DEVICE_FUNC \
-inline const RCmp ## RCOMPARATOR ## ReturnType \
-OP(const Scalar& s) const { \
-  return Derived::PlainObject::Constant(rows(), cols(), s).R_OP(*this); \
-} \
-friend inline const Cmp ## RCOMPARATOR ## ReturnType \
-OP(const Scalar& s, const Derived& d) { \
-  return d.R_OP(Derived::PlainObject::Constant(d.rows(), d.cols(), s)); \
-}
-
-
-
-/** \returns an expression of the coefficient-wise \< operator of *this and \a other
-  *
-  * Example: \include Cwise_less.cpp
-  * Output: \verbinclude Cwise_less.out
-  *
-  * \sa all(), any(), operator>(), operator<=()
-  */
-EIGEN_MAKE_CWISE_COMP_OP(operator<, LT)
-
-/** \returns an expression of the coefficient-wise \<= operator of *this and \a other
-  *
-  * Example: \include Cwise_less_equal.cpp
-  * Output: \verbinclude Cwise_less_equal.out
-  *
-  * \sa all(), any(), operator>=(), operator<()
-  */
-EIGEN_MAKE_CWISE_COMP_OP(operator<=, LE)
-
-/** \returns an expression of the coefficient-wise \> operator of *this and \a other
-  *
-  * Example: \include Cwise_greater.cpp
-  * Output: \verbinclude Cwise_greater.out
-  *
-  * \sa all(), any(), operator>=(), operator<()
-  */
-EIGEN_MAKE_CWISE_COMP_R_OP(operator>, operator<, LT)
-
-/** \returns an expression of the coefficient-wise \>= operator of *this and \a other
-  *
-  * Example: \include Cwise_greater_equal.cpp
-  * Output: \verbinclude Cwise_greater_equal.out
-  *
-  * \sa all(), any(), operator>(), operator<=()
-  */
-EIGEN_MAKE_CWISE_COMP_R_OP(operator>=, operator<=, LE)
-
-/** \returns an expression of the coefficient-wise == operator of *this and \a other
-  *
-  * \warning this performs an exact comparison, which is generally a bad idea with floating-point types.
-  * In order to check for equality between two vectors or matrices with floating-point coefficients, it is
-  * generally a far better idea to use a fuzzy comparison as provided by isApprox() and
-  * isMuchSmallerThan().
-  *
-  * Example: \include Cwise_equal_equal.cpp
-  * Output: \verbinclude Cwise_equal_equal.out
-  *
-  * \sa all(), any(), isApprox(), isMuchSmallerThan()
-  */
-EIGEN_MAKE_CWISE_COMP_OP(operator==, EQ)
-
-/** \returns an expression of the coefficient-wise != operator of *this and \a other
-  *
-  * \warning this performs an exact comparison, which is generally a bad idea with floating-point types.
-  * In order to check for equality between two vectors or matrices with floating-point coefficients, it is
-  * generally a far better idea to use a fuzzy comparison as provided by isApprox() and
-  * isMuchSmallerThan().
-  *
-  * Example: \include Cwise_not_equal.cpp
-  * Output: \verbinclude Cwise_not_equal.out
-  *
-  * \sa all(), any(), isApprox(), isMuchSmallerThan()
-  */
-EIGEN_MAKE_CWISE_COMP_OP(operator!=, NEQ)
-
-
-#undef EIGEN_MAKE_CWISE_COMP_OP
-#undef EIGEN_MAKE_CWISE_COMP_R_OP
-
-// scalar addition
-#ifndef EIGEN_PARSED_BY_DOXYGEN
-EIGEN_MAKE_SCALAR_BINARY_OP(operator+,sum)
-#else
-/** \returns an expression of \c *this with each coeff incremented by the constant \a scalar
-  *
-  * \tparam T is the scalar type of \a scalar. It must be compatible with the scalar type of the given expression.
-  *
-  * Example: \include Cwise_plus.cpp
-  * Output: \verbinclude Cwise_plus.out
-  *
-  * \sa operator+=(), operator-()
-  */
-template<typename T>
-const CwiseBinaryOp<internal::scalar_sum_op<Scalar,T>,Derived,Constant<T> > operator+(const T& scalar) const;
-/** \returns an expression of \a expr with each coeff incremented by the constant \a scalar
-  *
-  * \tparam T is the scalar type of \a scalar. It must be compatible with the scalar type of the given expression.
-  */
-template<typename T> friend
-const CwiseBinaryOp<internal::scalar_sum_op<T,Scalar>,Constant<T>,Derived> operator+(const T& scalar, const StorageBaseType& expr);
-#endif
-
-#ifndef EIGEN_PARSED_BY_DOXYGEN
-EIGEN_MAKE_SCALAR_BINARY_OP(operator-,difference)
-#else
-/** \returns an expression of \c *this with each coeff decremented by the constant \a scalar
-  *
-  * \tparam T is the scalar type of \a scalar. It must be compatible with the scalar type of the given expression.
-  *
-  * Example: \include Cwise_minus.cpp
-  * Output: \verbinclude Cwise_minus.out
-  *
-  * \sa operator+=(), operator-()
-  */
-template<typename T>
-const CwiseBinaryOp<internal::scalar_difference_op<Scalar,T>,Derived,Constant<T> > operator-(const T& scalar) const;
-/** \returns an expression of the constant matrix of value \a scalar decremented by the coefficients of \a expr
-  *
-  * \tparam T is the scalar type of \a scalar. It must be compatible with the scalar type of the given expression.
-  */
-template<typename T> friend
-const CwiseBinaryOp<internal::scalar_difference_op<T,Scalar>,Constant<T>,Derived> operator-(const T& scalar, const StorageBaseType& expr);
-#endif
-
-
-#ifndef EIGEN_PARSED_BY_DOXYGEN
-  EIGEN_MAKE_SCALAR_BINARY_OP_ONTHELEFT(operator/,quotient)
-#else
-  /**
-    * \brief Component-wise division of the scalar \a s by array elements of \a a.
-    *
-    * \tparam Scalar is the scalar type of \a x. It must be compatible with the scalar type of the given array expression (\c Derived::Scalar).
-    */
-  template<typename T> friend
-  inline const CwiseBinaryOp<internal::scalar_quotient_op<T,Scalar>,Constant<T>,Derived>
-  operator/(const T& s,const StorageBaseType& a);
-#endif
-
-/** \returns an expression of the coefficient-wise ^ operator of *this and \a other
- *
- * \warning this operator is for expression of bool only.
- *
- * Example: \include Cwise_boolean_xor.cpp
- * Output: \verbinclude Cwise_boolean_xor.out
- *
- * \sa operator&&(), select()
- */
-template<typename OtherDerived>
-EIGEN_DEVICE_FUNC
-inline const CwiseBinaryOp<internal::scalar_boolean_xor_op, const Derived, const OtherDerived>
-operator^(const EIGEN_CURRENT_STORAGE_BASE_CLASS<OtherDerived> &other) const
-{
-  EIGEN_STATIC_ASSERT((internal::is_same<bool,Scalar>::value && internal::is_same<bool,typename OtherDerived::Scalar>::value),
-                      THIS_METHOD_IS_ONLY_FOR_EXPRESSIONS_OF_BOOL);
-  return CwiseBinaryOp<internal::scalar_boolean_xor_op, const Derived, const OtherDerived>(derived(),other.derived());
-}
-
-// NOTE disabled until we agree on argument order
-#if 0
-/** \cpp11 \returns an expression of the coefficient-wise polygamma function.
-  *
-  * \specialfunctions_module
-  *
-  * It returns the \a n -th derivative of the digamma(psi) evaluated at \c *this.
-  *
-  * \warning Be careful with the order of the parameters: x.polygamma(n) is equivalent to polygamma(n,x)
-  *
-  * \sa Eigen::polygamma()
-  */
-template<typename DerivedN>
-inline const CwiseBinaryOp<internal::scalar_polygamma_op<Scalar>, const DerivedN, const Derived>
-polygamma(const EIGEN_CURRENT_STORAGE_BASE_CLASS<DerivedN> &n) const
-{
-  return CwiseBinaryOp<internal::scalar_polygamma_op<Scalar>, const DerivedN, const Derived>(n.derived(), this->derived());
-}
-#endif
-
-/** \returns an expression of the coefficient-wise zeta function.
-  *
-  * \specialfunctions_module
-  *
-  * It returns the Riemann zeta function of two arguments \c *this and \a q:
-  *
-  * \param q is the shift, it must be > 0
-  *
-  * \note *this is the exponent, it must be > 1.
-  * \note This function supports only float and double scalar types. To support other scalar types, the user has
-  * to provide implementations of zeta(T,T) for any scalar type T to be supported.
-  *
-  * This method is an alias for zeta(*this,q);
-  *
-  * \sa Eigen::zeta()
-  */
-template<typename DerivedQ>
-inline const CwiseBinaryOp<internal::scalar_zeta_op<Scalar>, const Derived, const DerivedQ>
-zeta(const EIGEN_CURRENT_STORAGE_BASE_CLASS<DerivedQ> &q) const
-{
-  return CwiseBinaryOp<internal::scalar_zeta_op<Scalar>, const Derived, const DerivedQ>(this->derived(), q.derived());
-}