sequenzo 0.1.18__cp312-cp312-macosx_10_13_universal2.whl → 0.1.19__cp312-cp312-macosx_10_13_universal2.whl

sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h

@@ -1,116 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
-// Copyright (C) 2009 Hauke Heibel <hauke.heibel@googlemail.com>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_STDDEQUE_H
-#define EIGEN_STDDEQUE_H
-
-#include "details.h"
-
-/**
- * This section contains a convenience MACRO which allows an easy specialization of
- * std::deque such that for data types with alignment issues the correct allocator
- * is used automatically.
- */
-#define EIGEN_DEFINE_STL_DEQUE_SPECIALIZATION(...) \
-namespace std \
-{ \
-  template<> \
-  class deque<__VA_ARGS__, std::allocator<__VA_ARGS__> >           \
-    : public deque<__VA_ARGS__, EIGEN_ALIGNED_ALLOCATOR<__VA_ARGS__> > \
-  { \
-    typedef deque<__VA_ARGS__, EIGEN_ALIGNED_ALLOCATOR<__VA_ARGS__> > deque_base; \
-  public: \
-    typedef __VA_ARGS__ value_type; \
-    typedef deque_base::allocator_type allocator_type; \
-    typedef deque_base::size_type size_type;  \
-    typedef deque_base::iterator iterator;  \
-    explicit deque(const allocator_type& a = allocator_type()) : deque_base(a) {}  \
-    template<typename InputIterator> \
-    deque(InputIterator first, InputIterator last, const allocator_type& a = allocator_type()) : deque_base(first, last, a) {} \
-    deque(const deque& c) : deque_base(c) {}  \
-    explicit deque(size_type num, const value_type& val = value_type()) : deque_base(num, val) {} \
-    deque(iterator start_, iterator end_) : deque_base(start_, end_) {}  \
-    deque& operator=(const deque& x) {  \
-      deque_base::operator=(x);  \
-      return *this;  \
-    } \
-  }; \
-}
-
-// check whether we really need the std::deque specialization
-#if !EIGEN_HAS_CXX11_CONTAINERS && !(defined(_GLIBCXX_DEQUE) && (!EIGEN_GNUC_AT_LEAST(4,1))) /* Note that before gcc-4.1 we already have: std::deque::resize(size_type,const T&). */
-
-namespace std {
-
-#define EIGEN_STD_DEQUE_SPECIALIZATION_BODY \
-  public:  \
-    typedef T value_type; \
-    typedef typename deque_base::allocator_type allocator_type; \
-    typedef typename deque_base::size_type size_type;  \
-    typedef typename deque_base::iterator iterator;  \
-    typedef typename deque_base::const_iterator const_iterator;  \
-    explicit deque(const allocator_type& a = allocator_type()) : deque_base(a) {}  \
-    template<typename InputIterator> \
-    deque(InputIterator first, InputIterator last, const allocator_type& a = allocator_type()) \
-    : deque_base(first, last, a) {} \
-    deque(const deque& c) : deque_base(c) {}  \
-    explicit deque(size_type num, const value_type& val = value_type()) : deque_base(num, val) {} \
-    deque(iterator start_, iterator end_) : deque_base(start_, end_) {}  \
-    deque& operator=(const deque& x) {  \
-      deque_base::operator=(x);  \
-      return *this;  \
-    }
-
-  template<typename T>
-  class deque<T,EIGEN_ALIGNED_ALLOCATOR<T> >
-    : public deque<EIGEN_WORKAROUND_MSVC_STL_SUPPORT(T),
-                   Eigen::aligned_allocator_indirection<EIGEN_WORKAROUND_MSVC_STL_SUPPORT(T)> >
-{
-  typedef deque<EIGEN_WORKAROUND_MSVC_STL_SUPPORT(T),
-                Eigen::aligned_allocator_indirection<EIGEN_WORKAROUND_MSVC_STL_SUPPORT(T)> > deque_base;
-  EIGEN_STD_DEQUE_SPECIALIZATION_BODY
-
-  void resize(size_type new_size)
-  { resize(new_size, T()); }
-
-#if defined(_DEQUE_)
-  // workaround MSVC std::deque implementation
-  void resize(size_type new_size, const value_type& x)
-  {
-    if (deque_base::size() < new_size)
-      deque_base::_Insert_n(deque_base::end(), new_size - deque_base::size(), x);
-    else if (new_size < deque_base::size())
-      deque_base::erase(deque_base::begin() + new_size, deque_base::end());
-  }
-  void push_back(const value_type& x)
-  { deque_base::push_back(x); } 
-  void push_front(const value_type& x)
-  { deque_base::push_front(x); }
-  using deque_base::insert;  
-  iterator insert(const_iterator position, const value_type& x)
-  { return deque_base::insert(position,x); }
-  void insert(const_iterator position, size_type new_size, const value_type& x)
-  { deque_base::insert(position, new_size, x); }
-#else
-  // default implementation which should always work.
-  void resize(size_type new_size, const value_type& x)
-  {
-    if (new_size < deque_base::size())
-      deque_base::erase(deque_base::begin() + new_size, deque_base::end());
-    else if (new_size > deque_base::size())
-      deque_base::insert(deque_base::end(), new_size - deque_base::size(), x);
-  }
-#endif
-  };
-}
-
-#endif // check whether specialization is actually required
-
-#endif // EIGEN_STDDEQUE_H

sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h

@@ -1,106 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2009 Hauke Heibel <hauke.heibel@googlemail.com>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_STDLIST_H
-#define EIGEN_STDLIST_H
-
-#include "details.h"
-
-/**
- * This section contains a convenience MACRO which allows an easy specialization of
- * std::list such that for data types with alignment issues the correct allocator
- * is used automatically.
- */
-#define EIGEN_DEFINE_STL_LIST_SPECIALIZATION(...) \
-namespace std \
-{ \
-  template<> \
-  class list<__VA_ARGS__, std::allocator<__VA_ARGS__> >           \
-    : public list<__VA_ARGS__, EIGEN_ALIGNED_ALLOCATOR<__VA_ARGS__> > \
-  { \
-    typedef list<__VA_ARGS__, EIGEN_ALIGNED_ALLOCATOR<__VA_ARGS__> > list_base; \
-  public: \
-    typedef __VA_ARGS__ value_type; \
-    typedef list_base::allocator_type allocator_type; \
-    typedef list_base::size_type size_type;  \
-    typedef list_base::iterator iterator;  \
-    explicit list(const allocator_type& a = allocator_type()) : list_base(a) {}  \
-    template<typename InputIterator> \
-    list(InputIterator first, InputIterator last, const allocator_type& a = allocator_type()) : list_base(first, last, a) {} \
-    list(const list& c) : list_base(c) {}  \
-    explicit list(size_type num, const value_type& val = value_type()) : list_base(num, val) {} \
-    list(iterator start_, iterator end_) : list_base(start_, end_) {}  \
-    list& operator=(const list& x) {  \
-      list_base::operator=(x);  \
-      return *this;  \
-    } \
-  }; \
-}
-
-// check whether we really need the std::list specialization
-#if !EIGEN_HAS_CXX11_CONTAINERS && !(defined(_GLIBCXX_LIST) && (!EIGEN_GNUC_AT_LEAST(4,1))) /* Note that before gcc-4.1 we already have: std::list::resize(size_type,const T&). */
-
-namespace std
-{
-
-#define EIGEN_STD_LIST_SPECIALIZATION_BODY \
-  public:  \
-    typedef T value_type; \
-    typedef typename list_base::allocator_type allocator_type; \
-    typedef typename list_base::size_type size_type;  \
-    typedef typename list_base::iterator iterator;  \
-    typedef typename list_base::const_iterator const_iterator;  \
-    explicit list(const allocator_type& a = allocator_type()) : list_base(a) {}  \
-    template<typename InputIterator> \
-    list(InputIterator first, InputIterator last, const allocator_type& a = allocator_type()) \
-    : list_base(first, last, a) {} \
-    list(const list& c) : list_base(c) {}  \
-    explicit list(size_type num, const value_type& val = value_type()) : list_base(num, val) {} \
-    list(iterator start_, iterator end_) : list_base(start_, end_) {}  \
-    list& operator=(const list& x) {  \
-    list_base::operator=(x);  \
-    return *this; \
-  }
-
-  template<typename T>
-  class list<T,EIGEN_ALIGNED_ALLOCATOR<T> >
-    : public list<EIGEN_WORKAROUND_MSVC_STL_SUPPORT(T),
-                  Eigen::aligned_allocator_indirection<EIGEN_WORKAROUND_MSVC_STL_SUPPORT(T)> >
-  {
-    typedef list<EIGEN_WORKAROUND_MSVC_STL_SUPPORT(T),
-                 Eigen::aligned_allocator_indirection<EIGEN_WORKAROUND_MSVC_STL_SUPPORT(T)> > list_base;
-    EIGEN_STD_LIST_SPECIALIZATION_BODY
-
-    void resize(size_type new_size)
-    { resize(new_size, T()); }
-
-    void resize(size_type new_size, const value_type& x)
-    {
-      if (list_base::size() < new_size)
-        list_base::insert(list_base::end(), new_size - list_base::size(), x);
-      else
-        while (new_size < list_base::size()) list_base::pop_back();
-    }
-
-#if defined(_LIST_)
-    // workaround MSVC std::list implementation
-    void push_back(const value_type& x)
-    { list_base::push_back(x); } 
-    using list_base::insert;  
-    iterator insert(const_iterator position, const value_type& x)
-    { return list_base::insert(position,x); }
-    void insert(const_iterator position, size_type new_size, const value_type& x)
-    { list_base::insert(position, new_size, x); }
-#endif
-  };
-}
-
-#endif // check whether specialization is actually required
-
-#endif // EIGEN_STDLIST_H

sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h

@@ -1,131 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
-// Copyright (C) 2009 Hauke Heibel <hauke.heibel@googlemail.com>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_STDVECTOR_H
-#define EIGEN_STDVECTOR_H
-
-#include "details.h"
-
-/**
- * This section contains a convenience MACRO which allows an easy specialization of
- * std::vector such that for data types with alignment issues the correct allocator
- * is used automatically.
- */
-#define EIGEN_DEFINE_STL_VECTOR_SPECIALIZATION(...) \
-namespace std \
-{ \
-  template<> \
-  class vector<__VA_ARGS__, std::allocator<__VA_ARGS__> >  \
-    : public vector<__VA_ARGS__, EIGEN_ALIGNED_ALLOCATOR<__VA_ARGS__> > \
-  { \
-    typedef vector<__VA_ARGS__, EIGEN_ALIGNED_ALLOCATOR<__VA_ARGS__> > vector_base; \
-  public: \
-    typedef __VA_ARGS__ value_type; \
-    typedef vector_base::allocator_type allocator_type; \
-    typedef vector_base::size_type size_type;  \
-    typedef vector_base::iterator iterator;  \
-    explicit vector(const allocator_type& a = allocator_type()) : vector_base(a) {}  \
-    template<typename InputIterator> \
-    vector(InputIterator first, InputIterator last, const allocator_type& a = allocator_type()) : vector_base(first, last, a) {} \
-    vector(const vector& c) : vector_base(c) {}  \
-    explicit vector(size_type num, const value_type& val = value_type()) : vector_base(num, val) {} \
-    vector(iterator start_, iterator end_) : vector_base(start_, end_) {}  \
-    vector& operator=(const vector& x) {  \
-      vector_base::operator=(x);  \
-      return *this;  \
-    } \
-  }; \
-}
-
-// Don't specialize if containers are implemented according to C++11
-#if !EIGEN_HAS_CXX11_CONTAINERS
-
-namespace std {
-
-#define EIGEN_STD_VECTOR_SPECIALIZATION_BODY \
-  public:  \
-    typedef T value_type; \
-    typedef typename vector_base::allocator_type allocator_type; \
-    typedef typename vector_base::size_type size_type;  \
-    typedef typename vector_base::iterator iterator;  \
-    typedef typename vector_base::const_iterator const_iterator;  \
-    explicit vector(const allocator_type& a = allocator_type()) : vector_base(a) {}  \
-    template<typename InputIterator> \
-    vector(InputIterator first, InputIterator last, const allocator_type& a = allocator_type()) \
-    : vector_base(first, last, a) {} \
-    vector(const vector& c) : vector_base(c) {}  \
-    explicit vector(size_type num, const value_type& val = value_type()) : vector_base(num, val) {} \
-    vector(iterator start_, iterator end_) : vector_base(start_, end_) {}  \
-    vector& operator=(const vector& x) {  \
-      vector_base::operator=(x);  \
-      return *this;  \
-    }
-
-  template<typename T>
-  class vector<T,EIGEN_ALIGNED_ALLOCATOR<T> >
-    : public vector<EIGEN_WORKAROUND_MSVC_STL_SUPPORT(T),
-                    Eigen::aligned_allocator_indirection<EIGEN_WORKAROUND_MSVC_STL_SUPPORT(T)> >
-{
-  typedef vector<EIGEN_WORKAROUND_MSVC_STL_SUPPORT(T),
-                 Eigen::aligned_allocator_indirection<EIGEN_WORKAROUND_MSVC_STL_SUPPORT(T)> > vector_base;
-  EIGEN_STD_VECTOR_SPECIALIZATION_BODY
-
-  void resize(size_type new_size)
-  { resize(new_size, T()); }
-
-#if defined(_VECTOR_)
-  // workaround MSVC std::vector implementation
-  void resize(size_type new_size, const value_type& x)
-  {
-    if (vector_base::size() < new_size)
-      vector_base::_Insert_n(vector_base::end(), new_size - vector_base::size(), x);
-    else if (new_size < vector_base::size())
-      vector_base::erase(vector_base::begin() + new_size, vector_base::end());
-  }
-  void push_back(const value_type& x)
-  { vector_base::push_back(x); } 
-  using vector_base::insert;  
-  iterator insert(const_iterator position, const value_type& x)
-  { return vector_base::insert(position,x); }
-  void insert(const_iterator position, size_type new_size, const value_type& x)
-  { vector_base::insert(position, new_size, x); }
-#elif defined(_GLIBCXX_VECTOR) && (!(EIGEN_GNUC_AT_LEAST(4,1)))
-  /* Note that before gcc-4.1 we already have: std::vector::resize(size_type,const T&).
-   * However, this specialization is still needed to make the above EIGEN_DEFINE_STL_VECTOR_SPECIALIZATION trick to work. */
-  void resize(size_type new_size, const value_type& x)
-  {
-    vector_base::resize(new_size,x);
-  }
-#elif defined(_GLIBCXX_VECTOR) && EIGEN_GNUC_AT_LEAST(4,2)
-  // workaround GCC std::vector implementation
-  void resize(size_type new_size, const value_type& x)
-  {
-    if (new_size < vector_base::size())
-      vector_base::_M_erase_at_end(this->_M_impl._M_start + new_size);
-    else
-      vector_base::insert(vector_base::end(), new_size - vector_base::size(), x);
-  }
-#else
-  // either GCC 4.1 or non-GCC
-  // default implementation which should always work.
-  void resize(size_type new_size, const value_type& x)
-  {
-    if (new_size < vector_base::size())
-      vector_base::erase(vector_base::begin() + new_size, vector_base::end());
-    else if (new_size > vector_base::size())
-      vector_base::insert(vector_base::end(), new_size - vector_base::size(), x);
-  }
-#endif
-  };
-}
-#endif // !EIGEN_HAS_CXX11_CONTAINERS
-
-
-#endif // EIGEN_STDVECTOR_H

sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h

@@ -1,84 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
-// Copyright (C) 2009 Hauke Heibel <hauke.heibel@googlemail.com>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_STL_DETAILS_H
-#define EIGEN_STL_DETAILS_H
-
-#ifndef EIGEN_ALIGNED_ALLOCATOR
-  #define EIGEN_ALIGNED_ALLOCATOR Eigen::aligned_allocator
-#endif
-
-namespace Eigen {
-
-  // This one is needed to prevent reimplementing the whole std::vector.
-  template <class T>
-  class aligned_allocator_indirection : public EIGEN_ALIGNED_ALLOCATOR<T>
-  {
-  public:
-    typedef std::size_t     size_type;
-    typedef std::ptrdiff_t  difference_type;
-    typedef T*              pointer;
-    typedef const T*        const_pointer;
-    typedef T&              reference;
-    typedef const T&        const_reference;
-    typedef T               value_type;
-
-    template<class U>
-    struct rebind
-    {
-      typedef aligned_allocator_indirection<U> other;
-    };
-
-    aligned_allocator_indirection() {}
-    aligned_allocator_indirection(const aligned_allocator_indirection& ) : EIGEN_ALIGNED_ALLOCATOR<T>() {}
-    aligned_allocator_indirection(const EIGEN_ALIGNED_ALLOCATOR<T>& ) {}
-    template<class U>
-    aligned_allocator_indirection(const aligned_allocator_indirection<U>& ) {}
-    template<class U>
-    aligned_allocator_indirection(const EIGEN_ALIGNED_ALLOCATOR<U>& ) {}
-    ~aligned_allocator_indirection() {}
-  };
-
-#if EIGEN_COMP_MSVC
-
-  // sometimes, MSVC detects, at compile time, that the argument x
-  // in std::vector::resize(size_t s,T x) won't be aligned and generate an error
-  // even if this function is never called. Whence this little wrapper.
-#define EIGEN_WORKAROUND_MSVC_STL_SUPPORT(T) \
-  typename Eigen::internal::conditional< \
-    Eigen::internal::is_arithmetic<T>::value, \
-    T, \
-    Eigen::internal::workaround_msvc_stl_support<T> \
-  >::type
-
-  namespace internal {
-  template<typename T> struct workaround_msvc_stl_support : public T
-  {
-    inline workaround_msvc_stl_support() : T() {}
-    inline workaround_msvc_stl_support(const T& other) : T(other) {}
-    inline operator T& () { return *static_cast<T*>(this); }
-    inline operator const T& () const { return *static_cast<const T*>(this); }
-    template<typename OtherT>
-    inline T& operator=(const OtherT& other)
-    { T::operator=(other); return *this; }
-    inline workaround_msvc_stl_support& operator=(const workaround_msvc_stl_support& other)
-    { T::operator=(other); return *this; }
-  };
-  }
-
-#else
-
-#define EIGEN_WORKAROUND_MSVC_STL_SUPPORT(T) T
-
-#endif
-
-}
-
-#endif // EIGEN_STL_DETAILS_H