scientific-writer 2.1.1__py3-none-any.whl → 2.2.2__py3-none-any.whl
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- scientific_writer/.claude/settings.local.json +30 -0
- scientific_writer/.claude/skills/citation-management/SKILL.md +1046 -0
- scientific_writer/.claude/skills/citation-management/assets/bibtex_template.bib +264 -0
- scientific_writer/.claude/skills/citation-management/assets/citation_checklist.md +386 -0
- scientific_writer/.claude/skills/citation-management/references/bibtex_formatting.md +908 -0
- scientific_writer/.claude/skills/citation-management/references/citation_validation.md +794 -0
- scientific_writer/.claude/skills/citation-management/references/google_scholar_search.md +725 -0
- scientific_writer/.claude/skills/citation-management/references/metadata_extraction.md +870 -0
- scientific_writer/.claude/skills/citation-management/references/pubmed_search.md +839 -0
- scientific_writer/.claude/skills/citation-management/scripts/doi_to_bibtex.py +204 -0
- scientific_writer/.claude/skills/citation-management/scripts/extract_metadata.py +569 -0
- scientific_writer/.claude/skills/citation-management/scripts/format_bibtex.py +349 -0
- scientific_writer/.claude/skills/citation-management/scripts/search_google_scholar.py +282 -0
- scientific_writer/.claude/skills/citation-management/scripts/search_pubmed.py +398 -0
- scientific_writer/.claude/skills/citation-management/scripts/validate_citations.py +497 -0
- scientific_writer/.claude/skills/clinical-reports/IMPLEMENTATION_SUMMARY.md +641 -0
- scientific_writer/.claude/skills/clinical-reports/README.md +236 -0
- scientific_writer/.claude/skills/clinical-reports/SKILL.md +1088 -0
- scientific_writer/.claude/skills/clinical-reports/assets/case_report_template.md +352 -0
- scientific_writer/.claude/skills/clinical-reports/assets/clinical_trial_csr_template.md +353 -0
- scientific_writer/.claude/skills/clinical-reports/assets/clinical_trial_sae_template.md +359 -0
- scientific_writer/.claude/skills/clinical-reports/assets/consult_note_template.md +305 -0
- scientific_writer/.claude/skills/clinical-reports/assets/discharge_summary_template.md +453 -0
- scientific_writer/.claude/skills/clinical-reports/assets/hipaa_compliance_checklist.md +395 -0
- scientific_writer/.claude/skills/clinical-reports/assets/history_physical_template.md +305 -0
- scientific_writer/.claude/skills/clinical-reports/assets/lab_report_template.md +309 -0
- scientific_writer/.claude/skills/clinical-reports/assets/pathology_report_template.md +249 -0
- scientific_writer/.claude/skills/clinical-reports/assets/quality_checklist.md +338 -0
- scientific_writer/.claude/skills/clinical-reports/assets/radiology_report_template.md +318 -0
- scientific_writer/.claude/skills/clinical-reports/assets/soap_note_template.md +253 -0
- scientific_writer/.claude/skills/clinical-reports/references/case_report_guidelines.md +570 -0
- scientific_writer/.claude/skills/clinical-reports/references/clinical_trial_reporting.md +693 -0
- scientific_writer/.claude/skills/clinical-reports/references/data_presentation.md +530 -0
- scientific_writer/.claude/skills/clinical-reports/references/diagnostic_reports_standards.md +629 -0
- scientific_writer/.claude/skills/clinical-reports/references/medical_terminology.md +588 -0
- scientific_writer/.claude/skills/clinical-reports/references/patient_documentation.md +744 -0
- scientific_writer/.claude/skills/clinical-reports/references/peer_review_standards.md +585 -0
- scientific_writer/.claude/skills/clinical-reports/references/regulatory_compliance.md +577 -0
- scientific_writer/.claude/skills/clinical-reports/scripts/check_deidentification.py +346 -0
- scientific_writer/.claude/skills/clinical-reports/scripts/compliance_checker.py +78 -0
- scientific_writer/.claude/skills/clinical-reports/scripts/extract_clinical_data.py +102 -0
- scientific_writer/.claude/skills/clinical-reports/scripts/format_adverse_events.py +103 -0
- scientific_writer/.claude/skills/clinical-reports/scripts/generate_report_template.py +163 -0
- scientific_writer/.claude/skills/clinical-reports/scripts/terminology_validator.py +133 -0
- scientific_writer/.claude/skills/clinical-reports/scripts/validate_case_report.py +334 -0
- scientific_writer/.claude/skills/clinical-reports/scripts/validate_trial_report.py +89 -0
- scientific_writer/.claude/skills/document-skills/docx/LICENSE.txt +30 -0
- scientific_writer/.claude/skills/document-skills/docx/SKILL.md +197 -0
- scientific_writer/.claude/skills/document-skills/docx/docx-js.md +350 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/mce/mc.xsd +75 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2012.xsd +67 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2018.xsd +14 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cex-2018.xsd +20 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cid-2016.xsd +13 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-symex-2015.xsd +8 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/pack.py +159 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/unpack.py +29 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validate.py +69 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/__init__.py +15 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/base.py +951 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/docx.py +274 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/pptx.py +315 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/redlining.py +279 -0
- scientific_writer/.claude/skills/document-skills/docx/ooxml.md +610 -0
- scientific_writer/.claude/skills/document-skills/docx/scripts/__init__.py +1 -0
- scientific_writer/.claude/skills/document-skills/docx/scripts/document.py +1276 -0
- scientific_writer/.claude/skills/document-skills/docx/scripts/templates/comments.xml +3 -0
- scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsExtended.xml +3 -0
- scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsExtensible.xml +3 -0
- scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsIds.xml +3 -0
- scientific_writer/.claude/skills/document-skills/docx/scripts/templates/people.xml +3 -0
- scientific_writer/.claude/skills/document-skills/docx/scripts/utilities.py +374 -0
- scientific_writer/.claude/skills/document-skills/pdf/LICENSE.txt +30 -0
- scientific_writer/.claude/skills/document-skills/pdf/SKILL.md +294 -0
- scientific_writer/.claude/skills/document-skills/pdf/forms.md +205 -0
- scientific_writer/.claude/skills/document-skills/pdf/reference.md +612 -0
- scientific_writer/.claude/skills/document-skills/pdf/scripts/check_bounding_boxes.py +70 -0
- scientific_writer/.claude/skills/document-skills/pdf/scripts/check_bounding_boxes_test.py +226 -0
- scientific_writer/.claude/skills/document-skills/pdf/scripts/check_fillable_fields.py +12 -0
- scientific_writer/.claude/skills/document-skills/pdf/scripts/convert_pdf_to_images.py +35 -0
- scientific_writer/.claude/skills/document-skills/pdf/scripts/create_validation_image.py +41 -0
- scientific_writer/.claude/skills/document-skills/pdf/scripts/extract_form_field_info.py +152 -0
- scientific_writer/.claude/skills/document-skills/pdf/scripts/fill_fillable_fields.py +114 -0
- scientific_writer/.claude/skills/document-skills/pdf/scripts/fill_pdf_form_with_annotations.py +108 -0
- scientific_writer/.claude/skills/document-skills/pptx/LICENSE.txt +30 -0
- scientific_writer/.claude/skills/document-skills/pptx/SKILL.md +484 -0
- scientific_writer/.claude/skills/document-skills/pptx/html2pptx.md +625 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/mce/mc.xsd +75 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2012.xsd +67 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2018.xsd +14 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cex-2018.xsd +20 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cid-2016.xsd +13 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-symex-2015.xsd +8 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/pack.py +159 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/unpack.py +29 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validate.py +69 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/__init__.py +15 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/base.py +951 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/docx.py +274 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/pptx.py +315 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/redlining.py +279 -0
- scientific_writer/.claude/skills/document-skills/pptx/ooxml.md +427 -0
- scientific_writer/.claude/skills/document-skills/pptx/scripts/html2pptx.js +979 -0
- scientific_writer/.claude/skills/document-skills/pptx/scripts/inventory.py +1020 -0
- scientific_writer/.claude/skills/document-skills/pptx/scripts/rearrange.py +231 -0
- scientific_writer/.claude/skills/document-skills/pptx/scripts/replace.py +385 -0
- scientific_writer/.claude/skills/document-skills/pptx/scripts/thumbnail.py +450 -0
- scientific_writer/.claude/skills/document-skills/xlsx/LICENSE.txt +30 -0
- scientific_writer/.claude/skills/document-skills/xlsx/SKILL.md +289 -0
- scientific_writer/.claude/skills/document-skills/xlsx/recalc.py +178 -0
- scientific_writer/.claude/skills/hypothesis-generation/SKILL.md +155 -0
- scientific_writer/.claude/skills/hypothesis-generation/assets/hypothesis_output_template.md +302 -0
- scientific_writer/.claude/skills/hypothesis-generation/references/experimental_design_patterns.md +327 -0
- scientific_writer/.claude/skills/hypothesis-generation/references/hypothesis_quality_criteria.md +196 -0
- scientific_writer/.claude/skills/hypothesis-generation/references/literature_search_strategies.md +505 -0
- scientific_writer/.claude/skills/latex-posters/README.md +417 -0
- scientific_writer/.claude/skills/latex-posters/SKILL.md +919 -0
- scientific_writer/.claude/skills/latex-posters/assets/baposter_template.tex +257 -0
- scientific_writer/.claude/skills/latex-posters/assets/beamerposter_template.tex +244 -0
- scientific_writer/.claude/skills/latex-posters/assets/poster_quality_checklist.md +358 -0
- scientific_writer/.claude/skills/latex-posters/assets/tikzposter_template.tex +251 -0
- scientific_writer/.claude/skills/latex-posters/references/latex_poster_packages.md +745 -0
- scientific_writer/.claude/skills/latex-posters/references/poster_content_guide.md +748 -0
- scientific_writer/.claude/skills/latex-posters/references/poster_design_principles.md +806 -0
- scientific_writer/.claude/skills/latex-posters/references/poster_layout_design.md +900 -0
- scientific_writer/.claude/skills/latex-posters/scripts/review_poster.sh +214 -0
- scientific_writer/.claude/skills/literature-review/SKILL.md +546 -0
- scientific_writer/.claude/skills/literature-review/assets/review_template.md +412 -0
- scientific_writer/.claude/skills/literature-review/references/citation_styles.md +166 -0
- scientific_writer/.claude/skills/literature-review/references/database_strategies.md +381 -0
- scientific_writer/.claude/skills/literature-review/scripts/generate_pdf.py +176 -0
- scientific_writer/.claude/skills/literature-review/scripts/search_databases.py +303 -0
- scientific_writer/.claude/skills/literature-review/scripts/verify_citations.py +222 -0
- scientific_writer/.claude/skills/markitdown/INSTALLATION_GUIDE.md +318 -0
- scientific_writer/.claude/skills/markitdown/LICENSE.txt +22 -0
- scientific_writer/.claude/skills/markitdown/OPENROUTER_INTEGRATION.md +359 -0
- scientific_writer/.claude/skills/markitdown/QUICK_REFERENCE.md +309 -0
- scientific_writer/.claude/skills/markitdown/README.md +184 -0
- scientific_writer/.claude/skills/markitdown/SKILL.md +450 -0
- scientific_writer/.claude/skills/markitdown/SKILL_SUMMARY.md +307 -0
- scientific_writer/.claude/skills/markitdown/assets/example_usage.md +463 -0
- scientific_writer/.claude/skills/markitdown/references/api_reference.md +399 -0
- scientific_writer/.claude/skills/markitdown/references/file_formats.md +542 -0
- scientific_writer/.claude/skills/markitdown/scripts/batch_convert.py +228 -0
- scientific_writer/.claude/skills/markitdown/scripts/convert_literature.py +283 -0
- scientific_writer/.claude/skills/markitdown/scripts/convert_with_ai.py +243 -0
- scientific_writer/.claude/skills/paper-2-web/SKILL.md +455 -0
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- {scientific_writer-2.1.1.dist-info → scientific_writer-2.2.2.dist-info}/licenses/LICENSE +0 -0
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name: treatment-plans
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description: "Generate comprehensive medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, and pain management. Includes SMART goal frameworks, evidence-based interventions, regulatory compliance (HIPAA), and validation tools for complete patient-centered care planning."
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---
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# Treatment Plan Writing
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## Overview
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Treatment plan writing is the systematic documentation of clinical care strategies designed to address patient health conditions through evidence-based interventions, measurable goals, and structured follow-up. This skill provides comprehensive LaTeX templates and validation tools for creating professional treatment plans across all medical specialties with full regulatory compliance.
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**Critical Principle: Treatment plans must be patient-centered, evidence-based, measurable, and compliant with healthcare regulations (HIPAA, documentation standards).** Every treatment plan should include clear goals, specific interventions, defined timelines, monitoring parameters, and expected outcomes that align with patient preferences and current clinical guidelines.
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## When to Use This Skill
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This skill should be used when:
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- Creating individualized treatment plans for patient care
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- Documenting therapeutic interventions for chronic disease management
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- Developing rehabilitation programs (physical therapy, occupational therapy, cardiac rehab)
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- Writing mental health and psychiatric treatment plans
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- Planning perioperative and surgical care pathways
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- Establishing pain management protocols
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- Setting patient-centered goals using SMART criteria
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- Coordinating multidisciplinary care across specialties
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- Ensuring regulatory compliance in treatment documentation
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- Generating professional treatment plans for medical records
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## Core Capabilities
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### 1. General Medical Treatment Plans
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General medical treatment plans address common chronic conditions and acute medical issues requiring structured therapeutic interventions.
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#### Standard Components
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**Patient Information (De-identified)**
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- Demographics (age, sex, relevant medical background)
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- Active medical conditions and comorbidities
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- Current medications and allergies
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- Relevant social and family history
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- Functional status and baseline assessments
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- **HIPAA Compliance**: Remove all 18 identifiers per Safe Harbor method
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**Diagnosis and Assessment Summary**
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- Primary diagnosis with ICD-10 code
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- Secondary diagnoses and comorbidities
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- Severity classification and staging
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- Functional limitations and quality of life impact
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- Risk stratification (e.g., cardiovascular risk, fall risk)
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- Prognostic indicators
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**Treatment Goals (SMART Format)**
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Short-term goals (1-3 months):
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- **Specific**: Clearly defined outcome (e.g., "Reduce HbA1c to <7%")
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- **Measurable**: Quantifiable metrics (e.g., "Decrease systolic BP by 10 mmHg")
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- **Achievable**: Realistic given patient capabilities
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- **Relevant**: Aligned with patient priorities and values
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- **Time-bound**: Specific timeframe (e.g., "within 8 weeks")
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Long-term goals (6-12 months):
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- Disease control or remission targets
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- Functional improvement objectives
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- Quality of life enhancement
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- Prevention of complications
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- Maintenance of independence
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**Interventions**
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*Pharmacological*:
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- Medications with specific dosages, routes, frequencies
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- Titration schedules and target doses
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- Drug-drug interaction considerations
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- Monitoring for adverse effects
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- Medication reconciliation
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*Non-pharmacological*:
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- Lifestyle modifications (diet, exercise, smoking cessation)
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- Behavioral interventions
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- Patient education and self-management
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- Monitoring and self-tracking (glucose, blood pressure, weight)
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- Assistive devices or adaptive equipment
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*Procedural*:
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- Planned procedures or interventions
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- Referrals to specialists
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- Diagnostic testing schedule
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- Preventive care (vaccinations, screenings)
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**Timeline and Schedule**
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- Treatment phases with specific timeframes
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- Milestone assessments and goal evaluations
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- Medication adjustments schedule
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- Expected duration of treatment
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**Monitoring Parameters**
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- Assessment tools and scales (e.g., PHQ-9, pain scales)
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- Frequency of monitoring
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- Thresholds for intervention or escalation
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- Patient-reported outcomes
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**Expected Outcomes**
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- Primary outcome measures
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- Success criteria and benchmarks
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- Expected timeline for improvement
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- Criteria for treatment modification
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**Follow-up Plan**
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- Emergency contact procedures
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- Transition or discharge planning
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**Patient Education**
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- Understanding of condition and treatment rationale
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- Medication administration and adherence
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- Warning signs and when to seek help
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- Resources and support services
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**Risk Mitigation**
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- Potential adverse effects and management
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- Drug interactions and contraindications
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- Fall prevention, infection prevention
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- Emergency action plans
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- Safety monitoring
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#### Common Applications
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- Diabetes mellitus management
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- Hypertension control
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- Heart failure treatment
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- COPD management
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- Asthma care plans
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- Hyperlipidemia treatment
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- Osteoarthritis management
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- Chronic kidney disease
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### 2. Rehabilitation Treatment Plans
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Rehabilitation plans focus on restoring function, improving mobility, and enhancing quality of life through structured therapeutic programs.
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#### Core Components
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**Functional Assessment**
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- Baseline functional status (ADLs, IADLs)
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- Range of motion, strength, balance, endurance
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- Gait analysis and mobility assessment
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- Standardized measures (FIM, Barthel Index, Berg Balance Scale)
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**Rehabilitation Goals**
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*Impairment-level goals*:
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- Improve shoulder flexion to 140 degrees
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*Activity-level goals*:
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- Transfer bed-to-chair independently
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*Participation-level goals*:
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- Return to work with modifications
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- Resume recreational activities
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- Independent community mobility
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**Therapeutic Interventions**
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*Physical Therapy*:
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- Therapeutic exercises (strengthening, stretching, endurance)
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- Manual therapy techniques
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- Modalities (heat, ice, electrical stimulation, ultrasound)
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*Occupational Therapy*:
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- Upper extremity strengthening and coordination
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- Adaptive equipment and modifications
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- Energy conservation techniques
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- Cognitive rehabilitation
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*Speech-Language Pathology*:
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- Communication strategies and augmentative devices
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*Other Services*:
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- Pulmonary rehabilitation
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**Treatment Schedule**
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- Session duration: 45-60 minutes
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- Treatment phase durations (acute, subacute, maintenance)
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- Expected total duration: 8-12 weeks
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**Progress Monitoring**
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**Home Exercise Program**
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- Self-monitoring strategies
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|
221
|
+
|
|
222
|
+
#### Specialty Rehabilitation
|
|
223
|
+
|
|
224
|
+
- Post-stroke rehabilitation
|
|
225
|
+
- Orthopedic rehabilitation (joint replacement, fracture)
|
|
226
|
+
- Cardiac rehabilitation (post-MI, post-surgery)
|
|
227
|
+
- Pulmonary rehabilitation
|
|
228
|
+
- Vestibular rehabilitation
|
|
229
|
+
- Neurological rehabilitation
|
|
230
|
+
- Sports injury rehabilitation
|
|
231
|
+
|
|
232
|
+
### 3. Mental Health Treatment Plans
|
|
233
|
+
|
|
234
|
+
Mental health treatment plans address psychiatric conditions through integrated psychotherapeutic, pharmacological, and psychosocial interventions.
|
|
235
|
+
|
|
236
|
+
#### Essential Components
|
|
237
|
+
|
|
238
|
+
**Psychiatric Assessment**
|
|
239
|
+
- Primary psychiatric diagnosis (DSM-5 criteria)
|
|
240
|
+
- Symptom severity and functional impairment
|
|
241
|
+
- Co-occurring mental health conditions
|
|
242
|
+
- Substance use assessment
|
|
243
|
+
- Suicide/homicide risk assessment
|
|
244
|
+
- Trauma history and PTSD screening
|
|
245
|
+
- Social determinants of mental health
|
|
246
|
+
|
|
247
|
+
**Treatment Goals**
|
|
248
|
+
|
|
249
|
+
*Symptom reduction*:
|
|
250
|
+
- Decrease depression severity (PHQ-9 score from 18 to <10)
|
|
251
|
+
- Reduce anxiety symptoms (GAD-7 score <5)
|
|
252
|
+
- Improve sleep quality (Pittsburgh Sleep Quality Index)
|
|
253
|
+
- Stabilize mood (reduced mood episodes)
|
|
254
|
+
|
|
255
|
+
*Functional improvement*:
|
|
256
|
+
- Return to work or school
|
|
257
|
+
- Improve social relationships and support
|
|
258
|
+
- Enhance coping skills and emotional regulation
|
|
259
|
+
- Increase engagement in meaningful activities
|
|
260
|
+
|
|
261
|
+
*Recovery-oriented goals*:
|
|
262
|
+
- Build resilience and self-efficacy
|
|
263
|
+
- Develop crisis management skills
|
|
264
|
+
- Establish sustainable wellness routines
|
|
265
|
+
- Achieve personal recovery goals
|
|
266
|
+
|
|
267
|
+
**Therapeutic Interventions**
|
|
268
|
+
|
|
269
|
+
*Psychotherapy*:
|
|
270
|
+
- Evidence-based modality (CBT, DBT, ACT, psychodynamic, IPT)
|
|
271
|
+
- Session frequency (weekly, biweekly)
|
|
272
|
+
- Treatment duration (12-16 weeks, ongoing)
|
|
273
|
+
- Specific techniques and targets
|
|
274
|
+
- Group therapy participation
|
|
275
|
+
|
|
276
|
+
*Psychopharmacology*:
|
|
277
|
+
- Medication class and rationale
|
|
278
|
+
- Starting dose and titration schedule
|
|
279
|
+
- Target symptoms
|
|
280
|
+
- Expected response timeline (2-4 weeks for antidepressants)
|
|
281
|
+
- Side effect monitoring
|
|
282
|
+
- Combination therapy considerations
|
|
283
|
+
|
|
284
|
+
*Psychosocial Interventions*:
|
|
285
|
+
- Case management services
|
|
286
|
+
- Peer support programs
|
|
287
|
+
- Family therapy or psychoeducation
|
|
288
|
+
- Vocational rehabilitation
|
|
289
|
+
- Supported housing or community integration
|
|
290
|
+
- Substance abuse treatment
|
|
291
|
+
|
|
292
|
+
**Safety Planning**
|
|
293
|
+
- Crisis contacts and emergency services
|
|
294
|
+
- Warning signs and triggers
|
|
295
|
+
- Coping strategies and self-soothing techniques
|
|
296
|
+
- Safe environment modifications
|
|
297
|
+
- Means restriction (firearms, medications)
|
|
298
|
+
- Support system activation
|
|
299
|
+
|
|
300
|
+
**Monitoring and Assessment**
|
|
301
|
+
- Symptom rating scales (weekly or biweekly)
|
|
302
|
+
- Medication adherence and side effects
|
|
303
|
+
- Suicidal ideation screening
|
|
304
|
+
- Functional status assessments
|
|
305
|
+
- Treatment engagement and therapeutic alliance
|
|
306
|
+
|
|
307
|
+
**Patient and Family Education**
|
|
308
|
+
- Psychoeducation about diagnosis
|
|
309
|
+
- Treatment rationale and expectations
|
|
310
|
+
- Medication information
|
|
311
|
+
- Relapse prevention strategies
|
|
312
|
+
- Community resources
|
|
313
|
+
|
|
314
|
+
#### Mental Health Conditions
|
|
315
|
+
|
|
316
|
+
- Major depressive disorder
|
|
317
|
+
- Anxiety disorders (GAD, panic, social anxiety)
|
|
318
|
+
- Bipolar disorder
|
|
319
|
+
- Schizophrenia and psychotic disorders
|
|
320
|
+
- PTSD and trauma-related disorders
|
|
321
|
+
- Eating disorders
|
|
322
|
+
- Substance use disorders
|
|
323
|
+
- Personality disorders
|
|
324
|
+
|
|
325
|
+
### 4. Chronic Disease Management Plans
|
|
326
|
+
|
|
327
|
+
Comprehensive long-term care plans for chronic conditions requiring ongoing monitoring, treatment adjustments, and multidisciplinary coordination.
|
|
328
|
+
|
|
329
|
+
#### Key Features
|
|
330
|
+
|
|
331
|
+
**Disease-Specific Targets**
|
|
332
|
+
- Evidence-based treatment goals per guidelines
|
|
333
|
+
- Stage-appropriate interventions
|
|
334
|
+
- Complication prevention strategies
|
|
335
|
+
- Disease progression monitoring
|
|
336
|
+
|
|
337
|
+
**Self-Management Support**
|
|
338
|
+
- Patient activation and engagement
|
|
339
|
+
- Shared decision-making
|
|
340
|
+
- Action plans for symptom changes
|
|
341
|
+
- Technology-enabled monitoring (apps, remote monitoring)
|
|
342
|
+
|
|
343
|
+
**Care Coordination**
|
|
344
|
+
- Primary care physician oversight
|
|
345
|
+
- Specialist consultations and co-management
|
|
346
|
+
- Care transitions (hospital to home)
|
|
347
|
+
- Medication management across providers
|
|
348
|
+
- Communication protocols
|
|
349
|
+
|
|
350
|
+
**Population Health Integration**
|
|
351
|
+
- Registry tracking and outreach
|
|
352
|
+
- Preventive care and screening schedules
|
|
353
|
+
- Quality measure reporting
|
|
354
|
+
- Care gaps identification
|
|
355
|
+
|
|
356
|
+
#### Applicable Conditions
|
|
357
|
+
|
|
358
|
+
- Type 1 and Type 2 diabetes
|
|
359
|
+
- Cardiovascular disease (CHF, CAD)
|
|
360
|
+
- Chronic respiratory diseases (COPD, asthma)
|
|
361
|
+
- Chronic kidney disease
|
|
362
|
+
- Inflammatory bowel disease
|
|
363
|
+
- Rheumatoid arthritis and autoimmune conditions
|
|
364
|
+
- HIV/AIDS
|
|
365
|
+
- Cancer survivorship care
|
|
366
|
+
|
|
367
|
+
### 5. Perioperative Care Plans
|
|
368
|
+
|
|
369
|
+
Structured plans for surgical and procedural patients covering preoperative preparation, intraoperative management, and postoperative recovery.
|
|
370
|
+
|
|
371
|
+
#### Components
|
|
372
|
+
|
|
373
|
+
**Preoperative Assessment**
|
|
374
|
+
- Surgical indication and planned procedure
|
|
375
|
+
- Preoperative risk stratification (ASA class, cardiac risk)
|
|
376
|
+
- Optimization of medical conditions
|
|
377
|
+
- Medication management (continuation, discontinuation)
|
|
378
|
+
- Preoperative testing and clearances
|
|
379
|
+
- Informed consent and patient education
|
|
380
|
+
|
|
381
|
+
**Perioperative Interventions**
|
|
382
|
+
- Enhanced recovery after surgery (ERAS) protocols
|
|
383
|
+
- Venous thromboembolism prophylaxis
|
|
384
|
+
- Antibiotic prophylaxis
|
|
385
|
+
- Glycemic control strategies
|
|
386
|
+
- Pain management plan (multimodal analgesia)
|
|
387
|
+
|
|
388
|
+
**Postoperative Care**
|
|
389
|
+
- Immediate recovery goals (24-48 hours)
|
|
390
|
+
- Early mobilization protocols
|
|
391
|
+
- Diet advancement
|
|
392
|
+
- Wound care and drain management
|
|
393
|
+
- Pain control regimen
|
|
394
|
+
- Complication monitoring
|
|
395
|
+
|
|
396
|
+
**Discharge Planning**
|
|
397
|
+
- Activity restrictions and progression
|
|
398
|
+
- Medication reconciliation
|
|
399
|
+
- Follow-up appointments
|
|
400
|
+
- Home health or rehabilitation services
|
|
401
|
+
- Return-to-work timeline
|
|
402
|
+
|
|
403
|
+
### 6. Pain Management Plans
|
|
404
|
+
|
|
405
|
+
Multimodal approaches to acute and chronic pain using evidence-based interventions and opioid-sparing strategies.
|
|
406
|
+
|
|
407
|
+
#### Comprehensive Components
|
|
408
|
+
|
|
409
|
+
**Pain Assessment**
|
|
410
|
+
- Pain location, quality, intensity (0-10 scale)
|
|
411
|
+
- Temporal pattern (constant, intermittent, breakthrough)
|
|
412
|
+
- Aggravating and alleviating factors
|
|
413
|
+
- Functional impact (sleep, activities, mood)
|
|
414
|
+
- Previous treatments and responses
|
|
415
|
+
- Psychosocial contributors
|
|
416
|
+
|
|
417
|
+
**Multimodal Interventions**
|
|
418
|
+
|
|
419
|
+
*Pharmacological*:
|
|
420
|
+
- Non-opioid analgesics (acetaminophen, NSAIDs)
|
|
421
|
+
- Adjuvant medications (antidepressants, anticonvulsants, muscle relaxants)
|
|
422
|
+
- Topical agents (lidocaine, capsaicin, diclofenac)
|
|
423
|
+
- Opioid therapy (when appropriate, with risk mitigation)
|
|
424
|
+
- Titration and rotation strategies
|
|
425
|
+
|
|
426
|
+
*Interventional Procedures*:
|
|
427
|
+
- Nerve blocks and injections
|
|
428
|
+
- Radiofrequency ablation
|
|
429
|
+
- Spinal cord stimulation
|
|
430
|
+
- Intrathecal drug delivery
|
|
431
|
+
|
|
432
|
+
*Non-pharmacological*:
|
|
433
|
+
- Physical therapy and exercise
|
|
434
|
+
- Cognitive-behavioral therapy for pain
|
|
435
|
+
- Mindfulness and relaxation techniques
|
|
436
|
+
- Acupuncture
|
|
437
|
+
- TENS units
|
|
438
|
+
|
|
439
|
+
**Opioid Safety (when prescribed)**
|
|
440
|
+
- Indication and planned duration
|
|
441
|
+
- Prescription drug monitoring program (PDMP) check
|
|
442
|
+
- Opioid risk assessment tools
|
|
443
|
+
- Naloxone prescription
|
|
444
|
+
- Treatment agreements
|
|
445
|
+
- Random urine drug screening
|
|
446
|
+
- Frequent follow-up and reassessment
|
|
447
|
+
|
|
448
|
+
**Functional Goals**
|
|
449
|
+
- Specific activity improvements
|
|
450
|
+
- Sleep quality enhancement
|
|
451
|
+
- Reduced pain interference
|
|
452
|
+
- Improved quality of life
|
|
453
|
+
- Return to work or meaningful activities
|
|
454
|
+
|
|
455
|
+
## Best Practices
|
|
456
|
+
|
|
457
|
+
### SMART Goal Setting
|
|
458
|
+
|
|
459
|
+
All treatment goals should meet SMART criteria:
|
|
460
|
+
|
|
461
|
+
- **Specific**: "Improve HbA1c to <7%" not "Better diabetes control"
|
|
462
|
+
- **Measurable**: Use quantifiable metrics, validated scales, objective measures
|
|
463
|
+
- **Achievable**: Consider patient capabilities, resources, social support
|
|
464
|
+
- **Relevant**: Align with patient values, priorities, and life circumstances
|
|
465
|
+
- **Time-bound**: Define clear timeframes for goal achievement and reassessment
|
|
466
|
+
|
|
467
|
+
### Patient-Centered Care
|
|
468
|
+
|
|
469
|
+
✓ **Shared Decision-Making**: Involve patients in goal-setting and treatment choices
|
|
470
|
+
✓ **Cultural Competence**: Respect cultural beliefs, language preferences, health literacy
|
|
471
|
+
✓ **Patient Preferences**: Honor treatment preferences and personal values
|
|
472
|
+
✓ **Individualization**: Tailor plans to patient's unique circumstances
|
|
473
|
+
✓ **Empowerment**: Support patient activation and self-management
|
|
474
|
+
|
|
475
|
+
### Evidence-Based Practice
|
|
476
|
+
|
|
477
|
+
✓ **Clinical Guidelines**: Follow current specialty society recommendations
|
|
478
|
+
✓ **Quality Measures**: Incorporate HEDIS, CMS quality measures
|
|
479
|
+
✓ **Comparative Effectiveness**: Use treatments with proven efficacy
|
|
480
|
+
✓ **Avoid Low-Value Care**: Eliminate unnecessary tests and interventions
|
|
481
|
+
✓ **Stay Current**: Update plans based on emerging evidence
|
|
482
|
+
|
|
483
|
+
### Documentation Standards
|
|
484
|
+
|
|
485
|
+
✓ **Completeness**: Include all required elements
|
|
486
|
+
✓ **Clarity**: Use clear, professional medical language
|
|
487
|
+
✓ **Accuracy**: Ensure factual correctness and current information
|
|
488
|
+
✓ **Timeliness**: Document plans promptly
|
|
489
|
+
✓ **Legibility**: Professional formatting and organization
|
|
490
|
+
✓ **Signature and Date**: Authenticate all treatment plans
|
|
491
|
+
|
|
492
|
+
### Regulatory Compliance
|
|
493
|
+
|
|
494
|
+
✓ **HIPAA Privacy**: De-identify all protected health information
|
|
495
|
+
✓ **Informed Consent**: Document patient understanding and agreement
|
|
496
|
+
✓ **Billing Support**: Include documentation to support medical necessity
|
|
497
|
+
✓ **Quality Reporting**: Enable extraction of quality metrics
|
|
498
|
+
✓ **Legal Protection**: Maintain defensible clinical documentation
|
|
499
|
+
|
|
500
|
+
### Multidisciplinary Coordination
|
|
501
|
+
|
|
502
|
+
✓ **Team Communication**: Share plans across care team
|
|
503
|
+
✓ **Role Clarity**: Define responsibilities for each team member
|
|
504
|
+
✓ **Care Transitions**: Ensure continuity across settings
|
|
505
|
+
✓ **Specialist Integration**: Coordinate with subspecialty care
|
|
506
|
+
✓ **Patient-Centered Medical Home**: Align with PCMH principles
|
|
507
|
+
|
|
508
|
+
## LaTeX Template Usage
|
|
509
|
+
|
|
510
|
+
### Template Selection
|
|
511
|
+
|
|
512
|
+
Choose the appropriate template based on clinical context:
|
|
513
|
+
|
|
514
|
+
1. **general_medical_treatment_plan.tex** - Primary care, chronic disease, general medicine
|
|
515
|
+
2. **rehabilitation_treatment_plan.tex** - PT/OT, post-surgery, injury recovery
|
|
516
|
+
3. **mental_health_treatment_plan.tex** - Psychiatric conditions, behavioral health
|
|
517
|
+
4. **chronic_disease_management_plan.tex** - Complex chronic diseases, multiple conditions
|
|
518
|
+
5. **perioperative_care_plan.tex** - Surgical patients, procedural care
|
|
519
|
+
6. **pain_management_plan.tex** - Acute or chronic pain conditions
|
|
520
|
+
|
|
521
|
+
### Template Structure
|
|
522
|
+
|
|
523
|
+
All LaTeX templates include:
|
|
524
|
+
- Professional formatting with appropriate margins and fonts
|
|
525
|
+
- Structured sections for all required components
|
|
526
|
+
- Tables for medications, interventions, timelines
|
|
527
|
+
- Goal-tracking sections with SMART criteria
|
|
528
|
+
- Space for provider signatures and dates
|
|
529
|
+
- HIPAA-compliant de-identification guidance
|
|
530
|
+
- Comments with detailed instructions
|
|
531
|
+
|
|
532
|
+
### Generating PDFs
|
|
533
|
+
|
|
534
|
+
```bash
|
|
535
|
+
# Compile LaTeX template to PDF
|
|
536
|
+
pdflatex general_medical_treatment_plan.tex
|
|
537
|
+
|
|
538
|
+
# For templates with references
|
|
539
|
+
pdflatex treatment_plan.tex
|
|
540
|
+
bibtex treatment_plan
|
|
541
|
+
pdflatex treatment_plan.tex
|
|
542
|
+
pdflatex treatment_plan.tex
|
|
543
|
+
```
|
|
544
|
+
|
|
545
|
+
## Validation and Quality Assurance
|
|
546
|
+
|
|
547
|
+
### Completeness Checking
|
|
548
|
+
|
|
549
|
+
Use validation scripts to ensure all required sections are present:
|
|
550
|
+
|
|
551
|
+
```bash
|
|
552
|
+
python check_completeness.py my_treatment_plan.tex
|
|
553
|
+
```
|
|
554
|
+
|
|
555
|
+
The script checks for:
|
|
556
|
+
- Patient information section
|
|
557
|
+
- Diagnosis and assessment
|
|
558
|
+
- SMART goals (short-term and long-term)
|
|
559
|
+
- Interventions (pharmacological, non-pharmacological)
|
|
560
|
+
- Timeline and schedule
|
|
561
|
+
- Monitoring parameters
|
|
562
|
+
- Expected outcomes
|
|
563
|
+
- Follow-up plan
|
|
564
|
+
- Patient education
|
|
565
|
+
- Risk mitigation
|
|
566
|
+
|
|
567
|
+
### Treatment Plan Validation
|
|
568
|
+
|
|
569
|
+
Comprehensive validation of treatment plan quality:
|
|
570
|
+
|
|
571
|
+
```bash
|
|
572
|
+
python validate_treatment_plan.py my_treatment_plan.tex
|
|
573
|
+
```
|
|
574
|
+
|
|
575
|
+
Validation includes:
|
|
576
|
+
- SMART goal criteria assessment
|
|
577
|
+
- Evidence-based intervention verification
|
|
578
|
+
- Timeline feasibility check
|
|
579
|
+
- Monitoring parameter adequacy
|
|
580
|
+
- Safety and risk mitigation review
|
|
581
|
+
- Regulatory compliance check
|
|
582
|
+
|
|
583
|
+
### Quality Checklist
|
|
584
|
+
|
|
585
|
+
Review treatment plans against the quality checklist (`quality_checklist.md`):
|
|
586
|
+
|
|
587
|
+
**Clinical Quality**
|
|
588
|
+
- [ ] Diagnosis is accurate and properly coded (ICD-10)
|
|
589
|
+
- [ ] Goals are SMART and patient-centered
|
|
590
|
+
- [ ] Interventions are evidence-based and guideline-concordant
|
|
591
|
+
- [ ] Timeline is realistic and clearly defined
|
|
592
|
+
- [ ] Monitoring plan is comprehensive
|
|
593
|
+
- [ ] Safety considerations are addressed
|
|
594
|
+
|
|
595
|
+
**Patient-Centered Care**
|
|
596
|
+
- [ ] Patient preferences and values incorporated
|
|
597
|
+
- [ ] Shared decision-making documented
|
|
598
|
+
- [ ] Health literacy appropriate language
|
|
599
|
+
- [ ] Cultural considerations addressed
|
|
600
|
+
- [ ] Patient education plan included
|
|
601
|
+
|
|
602
|
+
**Regulatory Compliance**
|
|
603
|
+
- [ ] HIPAA-compliant de-identification
|
|
604
|
+
- [ ] Medical necessity documented
|
|
605
|
+
- [ ] Informed consent noted
|
|
606
|
+
- [ ] Provider signature and credentials
|
|
607
|
+
- [ ] Date of plan creation/revision
|
|
608
|
+
|
|
609
|
+
**Coordination and Communication**
|
|
610
|
+
- [ ] Specialist referrals documented
|
|
611
|
+
- [ ] Care team roles defined
|
|
612
|
+
- [ ] Follow-up schedule clear
|
|
613
|
+
- [ ] Emergency contacts provided
|
|
614
|
+
- [ ] Transition planning addressed
|
|
615
|
+
|
|
616
|
+
## Integration with Other Skills
|
|
617
|
+
|
|
618
|
+
### Clinical Reports Integration
|
|
619
|
+
|
|
620
|
+
Treatment plans often accompany other clinical documentation:
|
|
621
|
+
|
|
622
|
+
- **SOAP Notes** (`clinical-reports` skill): Document ongoing implementation
|
|
623
|
+
- **H&P** (`clinical-reports` skill): Initial assessment informs treatment plan
|
|
624
|
+
- **Discharge Summaries** (`clinical-reports` skill): Summarize treatment plan execution
|
|
625
|
+
- **Progress Notes**: Track goal achievement and plan modifications
|
|
626
|
+
|
|
627
|
+
### Scientific Writing Integration
|
|
628
|
+
|
|
629
|
+
Evidence-based treatment planning requires literature support:
|
|
630
|
+
|
|
631
|
+
- **Citation Management** (`citation-management` skill): Reference clinical guidelines
|
|
632
|
+
- **Literature Review** (`literature-review` skill): Understand treatment evidence base
|
|
633
|
+
- **Research Lookup** (`research-lookup` skill): Find current best practices
|
|
634
|
+
|
|
635
|
+
### Research Integration
|
|
636
|
+
|
|
637
|
+
Treatment plans may be developed for clinical trials or research studies:
|
|
638
|
+
|
|
639
|
+
- **Research Grants** (`research-grants` skill): Treatment protocols for funded studies
|
|
640
|
+
- **Clinical Trial Reports** (`clinical-reports` skill): Intervention documentation
|
|
641
|
+
|
|
642
|
+
## Common Use Cases
|
|
643
|
+
|
|
644
|
+
### Example 1: Type 2 Diabetes Management
|
|
645
|
+
|
|
646
|
+
**Scenario**: 58-year-old patient with newly diagnosed Type 2 diabetes, HbA1c 8.5%, BMI 32
|
|
647
|
+
|
|
648
|
+
**Template**: `general_medical_treatment_plan.tex`
|
|
649
|
+
|
|
650
|
+
**Goals**:
|
|
651
|
+
- Short-term: Reduce HbA1c to <7.5% in 3 months
|
|
652
|
+
- Long-term: Achieve HbA1c <7%, lose 15 pounds in 6 months
|
|
653
|
+
|
|
654
|
+
**Interventions**:
|
|
655
|
+
- Pharmacological: Metformin 500mg BID, titrate to 1000mg BID
|
|
656
|
+
- Lifestyle: Mediterranean diet, 150 min/week moderate exercise
|
|
657
|
+
- Education: Diabetes self-management education, glucose monitoring
|
|
658
|
+
|
|
659
|
+
### Example 2: Post-Stroke Rehabilitation
|
|
660
|
+
|
|
661
|
+
**Scenario**: 70-year-old patient s/p left MCA stroke with right hemiparesis
|
|
662
|
+
|
|
663
|
+
**Template**: `rehabilitation_treatment_plan.tex`
|
|
664
|
+
|
|
665
|
+
**Goals**:
|
|
666
|
+
- Short-term: Improve right arm strength 2/5 to 3/5 in 4 weeks
|
|
667
|
+
- Long-term: Independent ambulation 150 feet with cane in 12 weeks
|
|
668
|
+
|
|
669
|
+
**Interventions**:
|
|
670
|
+
- PT 3x/week: Gait training, balance, strengthening
|
|
671
|
+
- OT 3x/week: ADL training, upper extremity function
|
|
672
|
+
- SLP 2x/week: Dysphagia therapy
|
|
673
|
+
|
|
674
|
+
### Example 3: Major Depressive Disorder
|
|
675
|
+
|
|
676
|
+
**Scenario**: 35-year-old with moderate depression, PHQ-9 score 16
|
|
677
|
+
|
|
678
|
+
**Template**: `mental_health_treatment_plan.tex`
|
|
679
|
+
|
|
680
|
+
**Goals**:
|
|
681
|
+
- Short-term: Reduce PHQ-9 to <10 in 8 weeks
|
|
682
|
+
- Long-term: Achieve remission (PHQ-9 <5), return to work
|
|
683
|
+
|
|
684
|
+
**Interventions**:
|
|
685
|
+
- Psychotherapy: CBT weekly sessions
|
|
686
|
+
- Medication: Sertraline 50mg daily, titrate to 100mg
|
|
687
|
+
- Lifestyle: Sleep hygiene, exercise 30 min 5x/week
|
|
688
|
+
|
|
689
|
+
### Example 4: Total Knee Arthroplasty
|
|
690
|
+
|
|
691
|
+
**Scenario**: 68-year-old scheduled for right TKA for osteoarthritis
|
|
692
|
+
|
|
693
|
+
**Template**: `perioperative_care_plan.tex`
|
|
694
|
+
|
|
695
|
+
**Preoperative Goals**:
|
|
696
|
+
- Optimize diabetes control (glucose <180)
|
|
697
|
+
- Discontinue anticoagulation per protocol
|
|
698
|
+
- Complete medical clearance
|
|
699
|
+
|
|
700
|
+
**Postoperative Goals**:
|
|
701
|
+
- Ambulate 50 feet by POD 1
|
|
702
|
+
- 90-degree knee flexion by POD 3
|
|
703
|
+
- Discharge home with PT services by POD 2-3
|
|
704
|
+
|
|
705
|
+
### Example 5: Chronic Low Back Pain
|
|
706
|
+
|
|
707
|
+
**Scenario**: 45-year-old with chronic non-specific low back pain, pain 7/10
|
|
708
|
+
|
|
709
|
+
**Template**: `pain_management_plan.tex`
|
|
710
|
+
|
|
711
|
+
**Goals**:
|
|
712
|
+
- Short-term: Reduce pain to 4/10 in 6 weeks
|
|
713
|
+
- Long-term: Return to work full-time, pain 2-3/10
|
|
714
|
+
|
|
715
|
+
**Interventions**:
|
|
716
|
+
- Pharmacological: Gabapentin 300mg TID, duloxetine 60mg daily
|
|
717
|
+
- PT: Core strengthening, McKenzie exercises 2x/week x 8 weeks
|
|
718
|
+
- Behavioral: CBT for pain, mindfulness meditation
|
|
719
|
+
- Interventional: Consider lumbar ESI if inadequate response
|
|
720
|
+
|
|
721
|
+
## Professional Standards and Guidelines
|
|
722
|
+
|
|
723
|
+
Treatment plans should align with:
|
|
724
|
+
|
|
725
|
+
### General Medicine
|
|
726
|
+
- American Diabetes Association (ADA) Standards of Care
|
|
727
|
+
- ACC/AHA Cardiovascular Guidelines
|
|
728
|
+
- GOLD COPD Guidelines
|
|
729
|
+
- JNC-8 Hypertension Guidelines
|
|
730
|
+
- KDIGO Chronic Kidney Disease Guidelines
|
|
731
|
+
|
|
732
|
+
### Rehabilitation
|
|
733
|
+
- APTA Clinical Practice Guidelines
|
|
734
|
+
- AOTA Practice Guidelines
|
|
735
|
+
- Cardiac Rehabilitation Guidelines (AHA/AACVPR)
|
|
736
|
+
- Stroke Rehabilitation Guidelines
|
|
737
|
+
|
|
738
|
+
### Mental Health
|
|
739
|
+
- APA Practice Guidelines
|
|
740
|
+
- VA/DoD Clinical Practice Guidelines
|
|
741
|
+
- NICE Guidelines (National Institute for Health and Care Excellence)
|
|
742
|
+
- Cochrane Reviews for psychiatric interventions
|
|
743
|
+
|
|
744
|
+
### Pain Management
|
|
745
|
+
- CDC Opioid Prescribing Guidelines
|
|
746
|
+
- AAPM/APS Chronic Pain Guidelines
|
|
747
|
+
- WHO Pain Ladder
|
|
748
|
+
- Multimodal Analgesia Best Practices
|
|
749
|
+
|
|
750
|
+
## Timeline Generation
|
|
751
|
+
|
|
752
|
+
Use the timeline generator script to create visual treatment timelines:
|
|
753
|
+
|
|
754
|
+
```bash
|
|
755
|
+
python timeline_generator.py --plan my_treatment_plan.tex --output timeline.pdf
|
|
756
|
+
```
|
|
757
|
+
|
|
758
|
+
Generates:
|
|
759
|
+
- Gantt chart of treatment phases
|
|
760
|
+
- Milestone markers for goal assessments
|
|
761
|
+
- Medication titration schedules
|
|
762
|
+
- Follow-up appointment calendar
|
|
763
|
+
- Intervention intensity over time
|
|
764
|
+
|
|
765
|
+
## Support and Resources
|
|
766
|
+
|
|
767
|
+
### Template Generation
|
|
768
|
+
|
|
769
|
+
Interactive template selection:
|
|
770
|
+
|
|
771
|
+
```bash
|
|
772
|
+
cd .claude/skills/treatment-plans/scripts
|
|
773
|
+
python generate_template.py
|
|
774
|
+
|
|
775
|
+
# Or specify type directly
|
|
776
|
+
python generate_template.py --type mental_health --output depression_treatment_plan.tex
|
|
777
|
+
```
|
|
778
|
+
|
|
779
|
+
### Validation Workflow
|
|
780
|
+
|
|
781
|
+
1. **Create treatment plan** using appropriate LaTeX template
|
|
782
|
+
2. **Check completeness**: `python check_completeness.py plan.tex`
|
|
783
|
+
3. **Validate quality**: `python validate_treatment_plan.py plan.tex`
|
|
784
|
+
4. **Review checklist**: Compare against `quality_checklist.md`
|
|
785
|
+
5. **Generate PDF**: `pdflatex plan.tex`
|
|
786
|
+
6. **Review with patient**: Ensure understanding and agreement
|
|
787
|
+
7. **Implement and document**: Track progress in clinical notes
|
|
788
|
+
|
|
789
|
+
### Additional Resources
|
|
790
|
+
|
|
791
|
+
- Clinical practice guidelines from specialty societies
|
|
792
|
+
- AHRQ Effective Health Care Program
|
|
793
|
+
- Cochrane Library for intervention evidence
|
|
794
|
+
- UpToDate and DynaMed for treatment recommendations
|
|
795
|
+
- CMS Quality Measures and HEDIS specifications
|
|
796
|
+
|
|
797
|
+
## Ethical Considerations
|
|
798
|
+
|
|
799
|
+
### Informed Consent
|
|
800
|
+
All treatment plans should involve patient understanding and voluntary agreement to proposed interventions.
|
|
801
|
+
|
|
802
|
+
### Cultural Sensitivity
|
|
803
|
+
Treatment plans must respect diverse cultural beliefs, health practices, and communication styles.
|
|
804
|
+
|
|
805
|
+
### Health Equity
|
|
806
|
+
Consider social determinants of health, access barriers, and health disparities when developing plans.
|
|
807
|
+
|
|
808
|
+
### Privacy Protection
|
|
809
|
+
Maintain strict HIPAA compliance; de-identify all protected health information in shared documents.
|
|
810
|
+
|
|
811
|
+
### Autonomy and Beneficence
|
|
812
|
+
Balance medical recommendations with patient autonomy and values while promoting patient welfare.
|
|
813
|
+
|
|
814
|
+
## License
|
|
815
|
+
|
|
816
|
+
Part of the Claude Scientific Writer project. See main LICENSE file.
|
|
817
|
+
|