passagemath-gap-pkg-semigroups 10.6.29__cp312-abi3-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl

gap/pkg/semigroups/CONTRIBUTING.md

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+## Contributing to the Semigroups package for GAP
+
+#### Copyright (C) 2011-2022 James D. Mitchell
+#### Licensing information is available in the LICENSE file.   
+
+We invite everyone to contribute by submitting patches, pull requests, and bug
+reports. We would like to make the contributing process as easy as possible.
+
+## Issue reporting and code contributions
+
+* Before you report an issue, or wish to add functionality, please try
+  and check to see if there are existing
+  [issues](https://github.com/semigroups/Semigroups/issues) or
+  [pull requests](https://github.com/semigroups/Semigroups/pulls).
+  We do not want you wasting your time duplicating somebody else's work.
+* For substantial changes it is also advisable to contact us before
+  you start work to discuss your ideas.
+* To help increase the chance of your pull request being accepted:
+  * Run the tests.
+  * Update the documentation, tests, examples, guides, and whatever
+    else is affected by your contribution.
+  * Use appropriate code formatting for both C and GAP (more details below).
+* *The Campsite Rule*
+  A basic rule when contributing to GAP is the **campsite rule**:
+  leave the codebase in better condition than you found it.
+  Please clean up any messes that you find, and don't
+  leave behind new messes for the next contributor.
+
+### Branches for contributions
+
+Bugfixes and technical changes should be made in branches off the next release
+branch, in a fork of the repository.  Releases are currently made from
+`stable-3.1` branch.  If there is more than one open branch with this type of
+name, then please use the lowest numbered such branch.
+
+New features should be developed in branches off the `master` branch, in
+a fork of the repository. You should regularly merge/rebase the `master` branch
+into your feature branch.
+
+When you think your changes are ready to go into
+a release, please make a pull request.
+
+Before asking us to merge your code please ensure that: 
+
+* your code is documented and tested
+* all of the tests run without errors
+* you have used the coding conventions below
+
+### Coding conventions
+
+* 2 spaces for indentation
+* continuation of lines containing `if`, `for`, `while` should be indented by
+  an extra 2 spaces
+* continuation of lines containing an opening bracket but not the matching
+  closed bracket should be indented so that the content of the next line is
+  aligned with the opening bracket. 
+* no tabs
+* no trailing whitespace
+* no line containing more than one semicolon `;`
+* no lines exceeding 80 characters
+* the operators `+`, `:=`, `*` and so on, should be immediately preceded and
+  followed by a space
+* there should be no whitespace after an opening bracket or before a closing
+  bracket
+* there should be exactly one space after a comma `,` except if it is at the end
+  of line
+* there should not be adjacent empty lines
+* there should not be variables which are declared but not used
+* everything declared in the file `gap/blah.gd` should be documented in the file
+  `doc/blah.xml`.  If a function or method is for internal use only, then its
+  name should have the prefix `SEMIGROUPS_` or it should have the suffix `NC`.
+  If a function or method is for use in one file only, then it should be
+  assigned using `BindGlobal` in that file. 
+* functions should only be assigned using the `foo := function()` syntax if they
+  are local variables inside another function; all other functions should be global.
+* error messages should give enough information for the user to know what they need
+  to change. For example, if a function has received the wrong input type, an
+  appropriate error to return is: `ErrorNoReturn("expected [something] as 2nd
+  argument, found [something else]")`.
+* functions and variables which will be unbound after they are read must have
+ an underscore '_' at the start.
+* non-user operations must start SEMIGROUPS_
+* other non-user functions, variables etc should be stored inside the
+ SEMIGROUPS global record (so that they do not pollute GAP with lots of
+ internal names of functions). Remember that record look up can be expensive so
+ if you need to use a function in SEMIGROUPS in a tight loop, then put it into
+ a local variable.
+
+Adapted from the contributing files for
+[GAP](https://github.com/gap-system/gap/blob/master/CONTRIBUTING.md)
+

gap/pkg/semigroups/GNUmakefile

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+#
+# Makefile rules for the semigroups package
+#
+KEXT_NAME = semigroups
+
+KEXT_CXXFLAGS =  -std=gnu++14 -O3
+KEXT_LDFLAGS = -Wl,-rpath,/host/sage-manylinux_2_28_x86_64/lib -lsemigroups 
+
+# configure settings
+GAPPATH = /host/sage-manylinux_2_28_x86_64/lib/gap
+HPCOMBI_CONSTEXPR_FUN_ARGS = yes
+LIBSEMIGROUPS_HPCOMBI_ENABLED = yes
+WITH_INCLUDED_LIBSEMIGROUPS = 
+SYS_IS_CYGWIN = 
+abs_top_builddir = /host/sage-manylinux_2_28_x86_64/var/tmp/sage/build/semigroups-5.5.3/src
+
+# sources
+KEXT_SOURCES =  src/bipart.cpp
+KEXT_SOURCES += src/cong.cpp
+KEXT_SOURCES += src/conglatt.cpp
+KEXT_SOURCES += src/froidure-pin-base.cpp
+KEXT_SOURCES += src/froidure-pin-bipart.cpp
+KEXT_SOURCES += src/froidure-pin-bmat.cpp
+KEXT_SOURCES += src/froidure-pin-fallback.cpp
+KEXT_SOURCES += src/froidure-pin-matrix.cpp
+KEXT_SOURCES += src/froidure-pin-max-plus-mat.cpp
+KEXT_SOURCES += src/froidure-pin-min-plus-mat.cpp
+KEXT_SOURCES += src/froidure-pin-pbr.cpp
+KEXT_SOURCES += src/froidure-pin-pperm.cpp
+KEXT_SOURCES += src/froidure-pin-transf.cpp
+KEXT_SOURCES += src/pkg.cpp
+KEXT_SOURCES += src/to_gap.cpp
+KEXT_SOURCES += gapbind14/src/gapbind14.cpp
+
+KEXT_CPPFLAGS = -Igapbind14/include/
+
+ifdef HPCOMBI_CONSTEXPR_FUN_ARGS
+KEXT_CPPFLAGS += -DHPCOMBI_CONSTEXPR_FUN_ARGS
+endif
+
+ifdef LIBSEMIGROUPS_HPCOMBI_ENABLED
+KEXT_CXXFLAGS += -mavx -flax-vector-conversions
+endif
+
+ifdef WITH_INCLUDED_LIBSEMIGROUPS
+# FIXME(later) all the include paths should point into bin/include/ and not to
+# the sources, or otherwise we should stop make installing into bin
+ifdef LIBSEMIGROUPS_HPCOMBI_ENABLED
+KEXT_CPPFLAGS += -Ilibsemigroups/extern/HPCombi/include
+KEXT_CPPFLAGS += -Ilibsemigroups/extern/HPCombi/include/fallback
+endif
+KEXT_CPPFLAGS += -Ilibsemigroups/extern/fmt-8.0.1/include
+KEXT_CPPFLAGS += -Ilibsemigroups/include
+endif
+KEXT_CPPFLAGS += -DFMT_HEADER_ONLY
+
+ifdef KERNEL_DEBUG
+KEXT_CPPFLAGS += -DDEBUG
+else
+KEXT_CPPFLAGS += -DNDEBUG
+endif
+
+KEXT_CXXFLAGS += $(KEXT_CPPFLAGS) # HACK: there is no KEXT_CPPFLAGS
+
+# HACK: On cygwin, add this flag to work around issues where fork() sometimes
+# fails on Cygwin when semigroups.so is loaded into GAP. This will hopefully
+# become unnecessary with GAP 4.13, which will automatically add this to the
+# flags.
+ifdef SYS_IS_CYGWIN
+KEXT_LDFLAGS += -Wl,--enable-auto-image-base
+endif
+
+# include shared GAP package build system
+KEXT_USE_AUTOCONF = 1
+include Makefile.gappkg
+
+# ensure pkgconfig.h is built
+$(KEXT_OBJS): gen/pkgconfig.h
+
+ifdef WITH_INCLUDED_LIBSEMIGROUPS
+# ensure libsemigroups is installed into bin before compiling
+$(KEXT_OBJS): bin/include/libsemigroups/libsemigroups.hpp
+
+# the following is only run if BUILT_SOURCES is wound up
+bin/include/libsemigroups/libsemigroups.hpp:
+	$(MAKE) -C libsemigroups install
+	# Cygwin only looks for DLLs in the same directory as the executable
+	# resides in. The following achieves that assuming that the GAP
+	# being used was self-compiled by the user. This supports
+	# both older GAPs with libtool (first) and GAP without libtool (second)
+	if test -f bin/bin/cygsemigroups*.dll ; then if test -d $(GAPPATH)/.libs; then cp bin/bin/cygsemigroups*.dll $(GAPPATH)/.libs/ ; fi ; fi
+	if test -f bin/bin/cygsemigroups*.dll ; then cp bin/bin/cygsemigroups*.dll $(GAPPATH)/ ; fi
+
+endif
+
+clean:
+	find . -name '*.gcda' -delete
+
+lint:
+	etc/gaplint.sh
+	etc/cpplint.sh
+
+format:
+	clang-format -i src/*.*pp
+
+.PHONY: lint format
+
+superclean: distclean
+	git clean -xdf --exclude *.swp --exclude *.swo
+.PHONY: superclean

gap/pkg/semigroups/GNUmakefile.in

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+#
+# Makefile rules for the semigroups package
+#
+KEXT_NAME = semigroups
+
+KEXT_CXXFLAGS = @LIBSEMIGROUPS_CFLAGS@ -std=gnu++14 -O3
+KEXT_LDFLAGS = @LIBSEMIGROUPS_RPATH@ @LIBSEMIGROUPS_LIBS@
+
+# configure settings
+GAPPATH = @GAPROOT@
+HPCOMBI_CONSTEXPR_FUN_ARGS = @HPCOMBI_CONSTEXPR_FUN_ARGS@
+LIBSEMIGROUPS_HPCOMBI_ENABLED = @LIBSEMIGROUPS_HPCOMBI_ENABLED@
+WITH_INCLUDED_LIBSEMIGROUPS = @WITH_INCLUDED_LIBSEMIGROUPS@
+SYS_IS_CYGWIN = @SYS_IS_CYGWIN@
+abs_top_builddir = @abs_top_builddir@
+
+# sources
+KEXT_SOURCES =  src/bipart.cpp
+KEXT_SOURCES += src/cong.cpp
+KEXT_SOURCES += src/conglatt.cpp
+KEXT_SOURCES += src/froidure-pin-base.cpp
+KEXT_SOURCES += src/froidure-pin-bipart.cpp
+KEXT_SOURCES += src/froidure-pin-bmat.cpp
+KEXT_SOURCES += src/froidure-pin-fallback.cpp
+KEXT_SOURCES += src/froidure-pin-matrix.cpp
+KEXT_SOURCES += src/froidure-pin-max-plus-mat.cpp
+KEXT_SOURCES += src/froidure-pin-min-plus-mat.cpp
+KEXT_SOURCES += src/froidure-pin-pbr.cpp
+KEXT_SOURCES += src/froidure-pin-pperm.cpp
+KEXT_SOURCES += src/froidure-pin-transf.cpp
+KEXT_SOURCES += src/pkg.cpp
+KEXT_SOURCES += src/to_gap.cpp
+KEXT_SOURCES += gapbind14/src/gapbind14.cpp
+
+KEXT_CPPFLAGS = -Igapbind14/include/
+
+ifdef HPCOMBI_CONSTEXPR_FUN_ARGS
+KEXT_CPPFLAGS += -DHPCOMBI_CONSTEXPR_FUN_ARGS
+endif
+
+ifdef LIBSEMIGROUPS_HPCOMBI_ENABLED
+KEXT_CXXFLAGS += @HPCOMBI_CXXFLAGS@
+endif
+
+ifdef WITH_INCLUDED_LIBSEMIGROUPS
+# FIXME(later) all the include paths should point into bin/include/ and not to
+# the sources, or otherwise we should stop make installing into bin
+ifdef LIBSEMIGROUPS_HPCOMBI_ENABLED
+KEXT_CPPFLAGS += -Ilibsemigroups/extern/HPCombi/include
+KEXT_CPPFLAGS += -Ilibsemigroups/extern/HPCombi/include/fallback
+endif
+KEXT_CPPFLAGS += -Ilibsemigroups/extern/fmt-8.0.1/include
+KEXT_CPPFLAGS += -Ilibsemigroups/include
+endif
+KEXT_CPPFLAGS += -DFMT_HEADER_ONLY
+
+ifdef KERNEL_DEBUG
+KEXT_CPPFLAGS += -DDEBUG
+else
+KEXT_CPPFLAGS += -DNDEBUG
+endif
+
+KEXT_CXXFLAGS += $(KEXT_CPPFLAGS) # HACK: there is no KEXT_CPPFLAGS
+
+# HACK: On cygwin, add this flag to work around issues where fork() sometimes
+# fails on Cygwin when semigroups.so is loaded into GAP. This will hopefully
+# become unnecessary with GAP 4.13, which will automatically add this to the
+# flags.
+ifdef SYS_IS_CYGWIN
+KEXT_LDFLAGS += -Wl,--enable-auto-image-base
+endif
+
+# include shared GAP package build system
+KEXT_USE_AUTOCONF = 1
+include Makefile.gappkg
+
+# ensure pkgconfig.h is built
+$(KEXT_OBJS): gen/pkgconfig.h
+
+ifdef WITH_INCLUDED_LIBSEMIGROUPS
+# ensure libsemigroups is installed into bin before compiling
+$(KEXT_OBJS): bin/include/libsemigroups/libsemigroups.hpp
+
+# the following is only run if BUILT_SOURCES is wound up
+bin/include/libsemigroups/libsemigroups.hpp:
+	$(MAKE) -C libsemigroups install
+	# Cygwin only looks for DLLs in the same directory as the executable
+	# resides in. The following achieves that assuming that the GAP
+	# being used was self-compiled by the user. This supports
+	# both older GAPs with libtool (first) and GAP without libtool (second)
+	if test -f bin/bin/cygsemigroups*.dll ; then if test -d $(GAPPATH)/.libs; then cp bin/bin/cygsemigroups*.dll $(GAPPATH)/.libs/ ; fi ; fi
+	if test -f bin/bin/cygsemigroups*.dll ; then cp bin/bin/cygsemigroups*.dll $(GAPPATH)/ ; fi
+
+endif
+
+clean:
+	find . -name '*.gcda' -delete
+
+lint:
+	etc/gaplint.sh
+	etc/cpplint.sh
+
+format:
+	clang-format -i src/*.*pp
+
+.PHONY: lint format
+
+superclean: distclean
+	git clean -xdf --exclude *.swp --exclude *.swo
+.PHONY: superclean