partis-bcr 1.0.8__py3-none-any.whl → 1.0.9.post1.dev1__py3-none-any.whl

test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.ancestralStates

@@ -0,0 +1,6 @@
+Node1	CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGACCCCTCGCAGTATAGCAGCAGCTTCCCTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
+Node2	CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGACCCCTCGCAGTATAGCAGCAGCTTCCCTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
+Node3	CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGACCCCTCGCAGTATAGCAGCAGCTTCCCTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
+Node4	CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGACCCCTCGCAGTATAGCAGCAGCTTCCCTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
+Node5	CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGACCCCTCGCAGTATAGCAGCAGCTTCCCTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
+Node6	CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGACCCCTCGCAGTATAGCAGCAGCTTCCCTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG

test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.ancestralTree

@@ -0,0 +1 @@
+((((((97366cf0d8:0.002730,20a0129b57:0.002730)Node1:0.000001,4233d708fe:0.000001)Node2:0.000001,31e052ee14:0.000001)Node3:0.000001,13de8675ec:0.000001)Node4:0.000001,XnaiveX:0.000001)Node5:0.000001,91796617a0:0.000001,33aaa62e12:0.000001)Node6;

test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.bestModel

@@ -0,0 +1 @@
+GTR{0.001000/0.843569/0.001000/0.001000/0.001000/1.000000}+FU{0.238421/0.269740/0.291564/0.200274}+G4m{99.862657}, noname = 1-367

test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.bestTree

@@ -0,0 +1 @@
+((33aaa62e12:0.000001,XnaiveX:0.000001):0.000001,(31e052ee14:0.000001,(4233d708fe:0.000001,(91796617a0:0.000001,13de8675ec:0.000001):0.000001):0.000001):0.000001,(97366cf0d8:0.002730,20a0129b57:0.002731):0.000001);

test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.bestTreeCollapsed

@@ -0,0 +1 @@
+(XnaiveX:0.000001,31e052ee14:0.000001,4233d708fe:0.000001,91796617a0:0.000001,13de8675ec:0.000001,97366cf0d8:0.002730,20a0129b57:0.002731,33aaa62e12:0.000001);

test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.log

@@ -0,0 +1,217 @@
+
+RAxML-NG v. 1.2.1 released on 22.12.2023 by The Exelixis Lab.
+Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
+Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth, Julia Haag, Anastasis Togkousidis.
+Latest version: https://github.com/amkozlov/raxml-ng
+Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml
+
+System: AMD EPYC 7763 64-Core Processor, 2 cores, 15 GB RAM
+
+RAxML-NG was called at 18-Aug-2025 15:31:54 as follows:
+
+/home/runner/work/partis/partis/bin/raxml-ng-linux --model GTR+G --msa /home/runner/work/partis/partis/test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa --msa-format FASTA --ancestral --tree /home/runner/work/partis/partis/test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.ancestralTree
+
+Analysis options:
+  run mode: Ancestral state reconstruction
+  start tree(s): user
+  random seed: 1755531114
+  tip-inner: ON
+  pattern compression: OFF
+  per-rate scalers: OFF
+  site repeats: OFF
+  logLH epsilon: general: 10.000000, brlen-triplet: 1000.000000
+  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
+  SIMD kernels: AVX2
+  parallelization: coarse-grained (auto), PTHREADS (auto)
+
+[00:00:00] Reading alignment from file: /home/runner/work/partis/partis/test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa
+[00:00:00] Loaded alignment with 8 taxa and 367 sites
+
+WARNING: Sequences XnaiveX and 13de8675ec are exactly identical!
+WARNING: Sequences XnaiveX and 31e052ee14 are exactly identical!
+WARNING: Sequences XnaiveX and 33aaa62e12 are exactly identical!
+WARNING: Sequences XnaiveX and 4233d708fe are exactly identical!
+WARNING: Sequences XnaiveX and 91796617a0 are exactly identical!
+WARNING: Duplicate sequences found: 5
+
+NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
+NOTE: was saved to: /home/runner/work/partis/partis/test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.reduced.phy
+
+Alignment comprises 1 partitions and 367 sites
+
+Partition 0: noname
+Model: GTR+FO+G4m
+Alignment sites: 367
+Gaps: 0.00 %
+Invariant sites: 99.46 %
+
+
+NOTE: Binary MSA file already exists: /home/runner/work/partis/partis/test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.rba
+
+Parallelization scheme autoconfig: 1 worker(s) x 2 thread(s)
+
+Parallel reduction/worker buffer size: 1 KB  / 0 KB
+
+[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 184 / 2944
+[00:00:00] Data distribution: max. searches per worker: 20
+
+Starting ML tree search with 20 distinct starting trees
+
+[00:00:00] Tree #1, initial LogLikelihood: -829.175292
+
+[00:00:00 -829.175292] Initial branch length optimization
+[00:00:00 -524.781300] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #1, final logLikelihood: -519.078739
+
+[00:00:00] Tree #2, initial LogLikelihood: -829.173726
+
+[00:00:00 -829.173726] Initial branch length optimization
+[00:00:00 -524.781300] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #2, final logLikelihood: -519.078739
+
+[00:00:00] Tree #3, initial LogLikelihood: -829.175772
+
+[00:00:00 -829.175772] Initial branch length optimization
+[00:00:00 -524.781300] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #3, final logLikelihood: -519.078739
+
+[00:00:00] Tree #4, initial LogLikelihood: -829.173726
+
+[00:00:00 -829.173726] Initial branch length optimization
+[00:00:00 -524.781300] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #4, final logLikelihood: -519.078738
+
+[00:00:00] Tree #5, initial LogLikelihood: -829.175587
+
+[00:00:00 -829.175587] Initial branch length optimization
+[00:00:00 -524.781300] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #5, final logLikelihood: -519.078739
+
+[00:00:00] Tree #6, initial LogLikelihood: -829.170958
+
+[00:00:00 -829.170958] Initial branch length optimization
+[00:00:00 -524.781300] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #6, final logLikelihood: -519.078737
+
+[00:00:00] Tree #7, initial LogLikelihood: -829.175772
+
+[00:00:00 -829.175772] Initial branch length optimization
+[00:00:00 -524.781300] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #7, final logLikelihood: -519.078738
+
+[00:00:00] Tree #8, initial LogLikelihood: -829.175587
+
+[00:00:00 -829.175587] Initial branch length optimization
+[00:00:00 -524.781299] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #8, final logLikelihood: -519.078736
+
+[00:00:00] Tree #9, initial LogLikelihood: -829.170958
+
+[00:00:00 -829.170958] Initial branch length optimization
+[00:00:00 -524.781300] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #9, final logLikelihood: -519.078738
+
+[00:00:00] Tree #10, initial LogLikelihood: -829.175721
+
+[00:00:00 -829.175721] Initial branch length optimization
+[00:00:00 -524.781300] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #10, final logLikelihood: -519.078738
+
+[00:00:00] Tree #11, initial LogLikelihood: -829.173726
+
+[00:00:00 -829.173726] Initial branch length optimization
+[00:00:00 -524.781300] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #11, final logLikelihood: -519.078739
+
+[00:00:00] Tree #12, initial LogLikelihood: -829.176201
+
+[00:00:00 -829.176201] Initial branch length optimization
+[00:00:00 -524.781300] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #12, final logLikelihood: -519.078733
+
+[00:00:00] Tree #13, initial LogLikelihood: -829.173726
+
+[00:00:00 -829.173726] Initial branch length optimization
+[00:00:00 -524.781300] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #13, final logLikelihood: -519.078739
+
+[00:00:00] Tree #14, initial LogLikelihood: -829.176201
+
+[00:00:00 -829.176201] Initial branch length optimization
+[00:00:00 -524.781300] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #14, final logLikelihood: -519.078738
+
+[00:00:00] Tree #15, initial LogLikelihood: -829.173726
+
+[00:00:00 -829.173726] Initial branch length optimization
+[00:00:00 -524.781300] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #15, final logLikelihood: -519.078739
+
+[00:00:00] Tree #16, initial LogLikelihood: -829.173726
+
+[00:00:00 -829.173726] Initial branch length optimization
+[00:00:00 -524.781300] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #16, final logLikelihood: -519.078739
+
+[00:00:00] Tree #17, initial LogLikelihood: -829.173912
+
+[00:00:00 -829.173912] Initial branch length optimization
+[00:00:00 -524.781300] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #17, final logLikelihood: -519.078738
+
+[00:00:00] Tree #18, initial LogLikelihood: -829.176201
+
+[00:00:00 -829.176201] Initial branch length optimization
+[00:00:00 -524.781300] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #18, final logLikelihood: -519.078737
+
+[00:00:00] Tree #19, initial LogLikelihood: -829.173726
+
+[00:00:00 -829.173726] Initial branch length optimization
+[00:00:00 -524.781300] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #19, final logLikelihood: -519.078739
+
+[00:00:00] Tree #20, initial LogLikelihood: -829.176201
+
+[00:00:00 -829.176201] Initial branch length optimization
+[00:00:00 -524.781299] Model parameter optimization (eps = 10.000000)
+
+[00:00:00] Tree #20, final logLikelihood: -519.078735
+
+
+Optimized model parameters:
+
+   Partition 0: noname
+   Rate heterogeneity: GAMMA (4 cats, mean),  alpha: 99.862657 (ML),  weights&rates: (0.250000,0.875823) (0.250000,0.964713) (0.250000,1.029567) (0.250000,1.129897) 
+   Base frequencies (ML): 0.238369 0.269737 0.291569 0.200326 
+   Substitution rates (ML): 0.001000 0.929845 0.001000 0.001000 0.001000 1.000000 
+
+Marginal ancestral probabilities saved to: /home/runner/work/partis/partis/test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.ancestralProbs
+Reconstructed ancestral sequences saved to: /home/runner/work/partis/partis/test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.ancestralStates
+Node-labeled tree saved to: /home/runner/work/partis/partis/test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.ancestralTree
+
+Execution log saved to: /home/runner/work/partis/partis/test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.log
+
+Analysis started: 18-Aug-2025 15:31:54 / finished: 18-Aug-2025 15:31:54
+
+Elapsed time: 0.322 seconds
+

test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.mlTrees

@@ -0,0 +1,20 @@
+(XnaiveX:0.000001,13de8675ec:0.000001,((97366cf0d8:0.002730,4233d708fe:0.000001):0.000001,((91796617a0:0.000001,33aaa62e12:0.000001):0.000001,(31e052ee14:0.000001,20a0129b57:0.002731):0.000001):0.000001):0.000001);
+(XnaiveX:0.000001,(33aaa62e12:0.000001,(4233d708fe:0.000001,(97366cf0d8:0.002730,((91796617a0:0.000001,31e052ee14:0.000001):0.000001,13de8675ec:0.000001):0.000001):0.000001):0.000001):0.000001,20a0129b57:0.002731);
+(XnaiveX:0.000001,((33aaa62e12:0.000001,(4233d708fe:0.000001,(97366cf0d8:0.002730,31e052ee14:0.000001):0.000001):0.000001):0.000001,(91796617a0:0.000001,13de8675ec:0.000001):0.000001):0.000001,20a0129b57:0.002731);
+((31e052ee14:0.000001,XnaiveX:0.000001):0.000001,13de8675ec:0.000001,(91796617a0:0.000001,(97366cf0d8:0.002730,(33aaa62e12:0.000001,(4233d708fe:0.000001,20a0129b57:0.002731):0.000001):0.000001):0.000001):0.000001);
+(XnaiveX:0.000001,(31e052ee14:0.000001,(91796617a0:0.000001,13de8675ec:0.000001):0.000001):0.000001,((97366cf0d8:0.002730,33aaa62e12:0.000001):0.000001,(4233d708fe:0.000001,20a0129b57:0.002731):0.000001):0.000001);
+(((97366cf0d8:0.002730,(4233d708fe:0.000001,31e052ee14:0.000001):0.000001):0.000001,(33aaa62e12:0.000001,XnaiveX:0.000001):0.000001):0.000001,(91796617a0:0.000001,13de8675ec:0.000001):0.000001,20a0129b57:0.002731);
+((33aaa62e12:0.000001,XnaiveX:0.000001):0.000001,(((97366cf0d8:0.002730,91796617a0:0.000001):0.000001,4233d708fe:0.000001):0.000001,13de8675ec:0.000001):0.000001,(31e052ee14:0.000001,20a0129b57:0.002731):0.000001);
+((33aaa62e12:0.000001,XnaiveX:0.000001):0.000001,(31e052ee14:0.000001,(4233d708fe:0.000001,(91796617a0:0.000001,13de8675ec:0.000001):0.000001):0.000001):0.000001,(97366cf0d8:0.002730,20a0129b57:0.002731):0.000001);
+((91796617a0:0.000001,XnaiveX:0.000001):0.000001,((97366cf0d8:0.002730,(4233d708fe:0.000001,31e052ee14:0.000001):0.000001):0.000001,(33aaa62e12:0.000001,13de8675ec:0.000001):0.000001):0.000001,20a0129b57:0.002731);
+((31e052ee14:0.000001,XnaiveX:0.000001):0.000001,13de8675ec:0.000001,((97366cf0d8:0.002730,4233d708fe:0.000001):0.000001,(91796617a0:0.000001,(33aaa62e12:0.000001,20a0129b57:0.002731):0.000001):0.000001):0.000001);
+((((((97366cf0d8:0.002730,4233d708fe:0.000001):0.000001,91796617a0:0.000001):0.000001,31e052ee14:0.000001):0.000001,20a0129b57:0.002731):0.000001,XnaiveX:0.000001):0.000001,13de8675ec:0.000001,33aaa62e12:0.000001);
+((((((13de8675ec:0.000001,XnaiveX:0.000001):0.000001,91796617a0:0.000001):0.000001,4233d708fe:0.000001):0.000001,33aaa62e12:0.000001):0.000001,31e052ee14:0.000001):0.000001,97366cf0d8:0.002730,20a0129b57:0.002731);
+((((((33aaa62e12:0.000001,97366cf0d8:0.002730):0.000001,XnaiveX:0.000001):0.000001,31e052ee14:0.000001):0.000001,20a0129b57:0.002731):0.000001,91796617a0:0.000001):0.000001,13de8675ec:0.000001,4233d708fe:0.000001);
+((((((13de8675ec:0.000001,97366cf0d8:0.002730):0.000001,4233d708fe:0.000001):0.000001,31e052ee14:0.000001):0.000001,33aaa62e12:0.000001):0.000001,91796617a0:0.000001):0.000001,20a0129b57:0.002731,XnaiveX:0.000001);
+((((((33aaa62e12:0.000001,13de8675ec:0.000001):0.000001,XnaiveX:0.000001):0.000001,31e052ee14:0.000001):0.000001,97366cf0d8:0.002730):0.000001,91796617a0:0.000001):0.000001,20a0129b57:0.002731,4233d708fe:0.000001);
+((((((91796617a0:0.000001,33aaa62e12:0.000001):0.000001,4233d708fe:0.000001):0.000001,13de8675ec:0.000001):0.000001,97366cf0d8:0.002730):0.000001,31e052ee14:0.000001):0.000001,XnaiveX:0.000001,20a0129b57:0.002731);
+((((((20a0129b57:0.002731,97366cf0d8:0.002730):0.000001,91796617a0:0.000001):0.000001,31e052ee14:0.000001):0.000001,XnaiveX:0.000001):0.000001,13de8675ec:0.000001):0.000001,33aaa62e12:0.000001,4233d708fe:0.000001);
+((((((97366cf0d8:0.002730,4233d708fe:0.000001):0.000001,31e052ee14:0.000001):0.000001,33aaa62e12:0.000001):0.000001,91796617a0:0.000001):0.000001,13de8675ec:0.000001):0.000001,XnaiveX:0.000001,20a0129b57:0.002731);
+((((((91796617a0:0.000001,33aaa62e12:0.000001):0.000001,13de8675ec:0.000001):0.000001,XnaiveX:0.000001):0.000001,20a0129b57:0.002731):0.000001,4233d708fe:0.000001):0.000001,97366cf0d8:0.002730,31e052ee14:0.000001);
+((((((97366cf0d8:0.002730,20a0129b57:0.002731):0.000001,4233d708fe:0.000001):0.000001,31e052ee14:0.000001):0.000001,13de8675ec:0.000001):0.000001,XnaiveX:0.000001):0.000001,91796617a0:0.000001,33aaa62e12:0.000001);

test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.reduced.phy

@@ -0,0 +1,4 @@
+3 367
+XnaiveX CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGACCCCTCGCAGTATAGCAGCAGCTTCCCTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
+20a0129b57 CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGACCCCTCGCAGTATAGCAGCAGCTTCCCTTTTGACTACTGGGGCCAGGGAACCCTAGTCACCGTCTCCTCAG
+97366cf0d8 CAGGTTCAGCTGGTTCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGACCCCTCGCAGTATAGCAGCAGCTTCCCTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG

test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.startTree

@@ -0,0 +1,20 @@
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