PyPI - partis-bcr - Versions diffs - 1.0.8__py3-none-any.whl → 1.0.9.post1.dev1__py3-none-any.whl - Mend

partis-bcr 1.0.8py3-none-any.whl → 1.0.9.post1.dev1py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (156) hide show

packages/ham/bcrham CHANGED Viewed

Binary file

packages/ig-sw/src/ig_align/ig-sw CHANGED Viewed

Binary file

{partis_bcr-1.0.8.dist-info → partis_bcr-1.0.9.post1.dev1.dist-info}/METADATA RENAMED Viewed

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: partis-bcr
-Version: 1.0.8
+Version: 1.0.9.post1.dev1
 Summary: B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference
 Home-page: https://github.com/psathyrella/partis
 Author: Duncan Ralph

{partis_bcr-1.0.8.dist-info → partis_bcr-1.0.9.post1.dev1.dist-info}/RECORD RENAMED Viewed

@@ -1,5 +1,4 @@
 bin/FastTree-linux,sha256=ztIqHXzUJRUFLo-BEcE97UyityueIJmFPWXFOoJ0l4k,368264
-bin/FastTree-macos,sha256=veGDvI4M2NsLg2yh-XHlZiaGO0wJE2Ztxz9ZwvaPwHQ,371008
 bin/add-chimeras.py,sha256=7Zug9D7qtVa2k81kcIGtMKH0BjCmeiq2_rRDjPoiZug,2351
 bin/add-seqs-to-outputs.py,sha256=O7Mkz7GbkJPNtJ4v1fI1d3XfuYLOxG0ZofG37U_Rjsg,5156
 bin/bcr-phylo-run.py,sha256=rzafOBrnLlOQWp3XnBHwYqnsVQVThrVLab1K_zgNi-k,54060
@@ -302,18 +301,18 @@ data/substitution-profiles/GSSPs_for_VH_genes_with_at_least_300_lineages.txt,sha
 data/substitution-profiles/GSSPs_for_VK_genes_with_at_least_300_lineages.txt,sha256=dyMU1R_Izk_ciOVTNWmGL5SQBIKDCCKpxXM6eTGO4Fg,184138
 data/substitution-profiles/GSSPs_for_VL_genes_with_at_least_300_lineages.txt,sha256=CMFb1gk8MbfaMb6y0_qLLiKErrx866C2EafKRSPesB4,184979
 data/substitution-profiles/notes.txt,sha256=-DK9E31YovqOWaXR1Q-LL5KFhjVJcSLwXbriajUq1TA,389
-packages/ham/bcrham,sha256=o5p2CWbikoQnJeaTuavy2T9hAdiBUDqhBgJDSXJq7B8,768288
-packages/ig-sw/src/ig_align/ig-sw,sha256=Pl5ghiN_OYvM3299ErtwOYPhoWECl3fyzIHWAKPtTKE,387408
-partis_bcr-1.0.8.data/scripts/cf-alleles.py,sha256=AgFLoRfcwuX1InVpE3zG6-unqoCBGOeCTpEl_RZftvU,4723
-partis_bcr-1.0.8.data/scripts/cf-germlines.py,sha256=8_bq0ue3ALFQ-a7-ntnhkbCaBdQ5mlWtQgNeQP_TvcQ,3135
-partis_bcr-1.0.8.data/scripts/compare-plotdirs.py,sha256=AABVGUOwlLCijjo-wwDLfLHiq80TrFVm8mE-4Zqn5Sg,16370
-partis_bcr-1.0.8.data/scripts/extract-pairing-info.py,sha256=IGPd4jYpsW3IPgsrxTJrk9jAwUKlb45eX3lOpb8Maos,2941
-partis_bcr-1.0.8.data/scripts/gctree-run.py,sha256=BfSZCFgqdhUEqVsv2h20o6OkS6KbQgx5tfvBhySRx2U,13950
-partis_bcr-1.0.8.data/scripts/get-naive-probabilities.py,sha256=WfuglaedP3PF0wpksGiUSvfAg4wJoNlucTPa1Wl9MDo,6916
-partis_bcr-1.0.8.data/scripts/parse-output.py,sha256=8nrg0ip3XDhme02NCiI45BrSqCNvbRIbKYErD8STk8U,19519
-partis_bcr-1.0.8.data/scripts/partis-test.py,sha256=bQq_sT9v2DVQBgUGqQzdvy-q1jUrqAxV6Sl-tzENwus,63735
-partis_bcr-1.0.8.data/scripts/split-loci.py,sha256=K0WXQYtloL5rs46mwvEXUecqT3iG8bbqwNOTNwfpvzY,20704
-partis_bcr-1.0.8.dist-info/licenses/COPYING,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
+packages/ham/bcrham,sha256=1g26DafyE_6wglae2TUXc6xkpd2AUp0LDV6Kl_2S7jY,852320
+packages/ig-sw/src/ig_align/ig-sw,sha256=lYbqn7wujB6j1T7BGeeCqw5kwbPFn0213lDfUBmJb98,282048
+partis_bcr-1.0.9.post1.dev1.data/scripts/cf-alleles.py,sha256=AgFLoRfcwuX1InVpE3zG6-unqoCBGOeCTpEl_RZftvU,4723
+partis_bcr-1.0.9.post1.dev1.data/scripts/cf-germlines.py,sha256=8_bq0ue3ALFQ-a7-ntnhkbCaBdQ5mlWtQgNeQP_TvcQ,3135
+partis_bcr-1.0.9.post1.dev1.data/scripts/compare-plotdirs.py,sha256=AABVGUOwlLCijjo-wwDLfLHiq80TrFVm8mE-4Zqn5Sg,16370
+partis_bcr-1.0.9.post1.dev1.data/scripts/extract-pairing-info.py,sha256=IGPd4jYpsW3IPgsrxTJrk9jAwUKlb45eX3lOpb8Maos,2941
+partis_bcr-1.0.9.post1.dev1.data/scripts/gctree-run.py,sha256=BfSZCFgqdhUEqVsv2h20o6OkS6KbQgx5tfvBhySRx2U,13950
+partis_bcr-1.0.9.post1.dev1.data/scripts/get-naive-probabilities.py,sha256=WfuglaedP3PF0wpksGiUSvfAg4wJoNlucTPa1Wl9MDo,6916
+partis_bcr-1.0.9.post1.dev1.data/scripts/parse-output.py,sha256=8nrg0ip3XDhme02NCiI45BrSqCNvbRIbKYErD8STk8U,19519
+partis_bcr-1.0.9.post1.dev1.data/scripts/partis-test.py,sha256=bQq_sT9v2DVQBgUGqQzdvy-q1jUrqAxV6Sl-tzENwus,63735
+partis_bcr-1.0.9.post1.dev1.data/scripts/split-loci.py,sha256=K0WXQYtloL5rs46mwvEXUecqT3iG8bbqwNOTNwfpvzY,20704
+partis_bcr-1.0.9.post1.dev1.dist-info/licenses/COPYING,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
 python/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 python/alleleclusterer.py,sha256=x50E_lJMlKPc-CPkdkM1qe4AvVi-mkDJ1cBDxs5L-ms,30551
 python/allelefinder.py,sha256=SgJjopk5ivLOcmTumsWq5PZ05aPZ6zQyjTd1fxeRjaM,80402
@@ -373,7 +372,8 @@ test/phylo-naive-run.py,sha256=pTyXPv0CBddu0CVPetORRazoYyKzYa427Cwtpcuq7DE,5282
 test/run-gl-inference.sh,sha256=XK3cs5xQad5LAoVaVp2-3IMJssml8ZBNYPwLRrlW2vg,1408
 test/scoper-run.py,sha256=GzLeaGrh3IPzD9B4KC6GiS0wak8ctL7td2WJmsbb7K8,8672
 test/test.py,sha256=CS0H2eckShv9TIPh-p_6jeaBuDd3zlRTDjaHmXU3Ln4,63749
-test/new-results/test.log,sha256=dZ2R4arnRWdw0bJDQ1m4oago0s8h179-YxPEdd39MSU,1859
+test/new-results/get-selection-metrics-new-simu.yaml,sha256=zf6ucC8BRTAm0dhwNKBiQllmOsQkFUqGF-sAInpEIMY,9348
+test/new-results/test.log,sha256=ADD7VWVH1B7TWslJAnbXGsfGCN_gmKtGZXLah_3DAw8,1610
 test/new-results/test/parameters/simu/sw-cache.yaml,sha256=xRR9tZOPBIIU2d3QmiWCUcprRlXZre8BhmMONmgAcq8,24635
 test/new-results/test/parameters/simu/hmm/all-mean-mute-freqs.csv,sha256=9U28KM6iUMP9_3CwhOlFl5uhO2I4nBJRpKy20z5rfMc,694
 test/new-results/test/parameters/simu/hmm/all-mean-n-muted.csv,sha256=8n9PeG1kl44R8PSBy80bm-EXIUbUR2Oae53USbydt9o,2435
@@ -455,13 +455,13 @@ test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ4_star_02.csv,sha256=dm9
 test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ6_star_02.csv,sha256=-nvF_Re3o29DhELGSHCanf8UF4894aGmLvaDahgjIHo,6238
 test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-66_star_02.csv,sha256=L2u0w3IWDJKOshqCT6St6SxKKPAjq6JbY0JDH9uBMls,39711
 test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-7_star_05.csv,sha256=Ve6Y1IAOpf0ls0fwDtz7KMoMxrGtH2RadkomESpABR8,39704
-test/paired/new-results/get-selection-metrics-new-simu-chosen-abs.csv,sha256=1OOMLjMahLNNNKO_5-S9SnpiH4ep2t_SkGWMIr3yHVY,12599
-test/paired/new-results/run-times.csv,sha256=LNlVTfb6QKcDyKPCRDya-1IaVECXUU5K_r_aNb4-mcg,195
-test/paired/new-results/test.log,sha256=a3ugdegPKbFUgHHvFhXkH3HSa_dvQPBa9gdb8I4coWA,72648
+test/paired/new-results/get-selection-metrics-new-simu-chosen-abs.csv,sha256=pPLqsoWr7MChKJCeXfFDEo6JS4IG21TgmLzoMi5-vdQ,12593
+test/paired/new-results/run-times.csv,sha256=FJkaNMlGzhtiDrjQlKCwblL7ozGa77wdTCgxEFkXMqk,193
+test/paired/new-results/test.log,sha256=LUmtosxFEWkMW8uVJZdThaNTHxc0YpMbxqa5F8Fwt6k,70979
 test/paired/new-results/partition-new-simu/partition-igh.yaml,sha256=qelM_0rtDDwpLWl6_ItvkrXioZ9MI6VMiLPMf6tcbIs,71140
 test/paired/new-results/partition-new-simu/partition-igk.yaml,sha256=9iTcIjgyiVsoADqym9El14fwDT4nU_xu2mWy_UeVHSA,46688
 test/paired/new-results/partition-new-simu/partition-igl.yaml,sha256=XdV7rr3fQJPi3-5NvCxhHI4k5huOja8zxdI9XHWatMQ,23871
-test/paired/new-results/partition-new-simu/selection-metrics.yaml,sha256=hN4qho6bA693G0kW3-wzkwDUa2B9IluQMnEFRk0CawI,11330
+test/paired/new-results/partition-new-simu/selection-metrics.yaml,sha256=CPJCXzt04h_69cPRZvQk6pLaKexbfpeKRKBgaNOWtyg,11068
 test/paired/new-results/partition-new-simu/true-pair-clean-performance-correct-family.csv,sha256=Apzy9JVSmNsEdPoVZxITXt6FZ4nVcwnrDvjMVw8yH-E,371
 test/paired/new-results/partition-new-simu/true-pair-clean-performance-correct.csv,sha256=Apzy9JVSmNsEdPoVZxITXt6FZ4nVcwnrDvjMVw8yH-E,371
 test/paired/new-results/partition-new-simu/true-pair-clean-performance-mispaired.csv,sha256=czqVh4ZxAreW2aCwKTHVad8buECSwn1eKK5RToGuESM,402
@@ -470,76 +470,76 @@ test/paired/new-results/partition-new-simu/true-pair-clean-performance-near-fami
 test/paired/new-results/partition-new-simu/true-pair-clean-performance-total.csv,sha256=6H8vsJkv89E5OaepY5bg1DnptEIePK6-C6QjuaBRXv4,337
 test/paired/new-results/partition-new-simu/true-pair-clean-performance-unpaired.csv,sha256=tzXelx5oSqhgkstNA-6DGK027GYT-M4TXrFGDEWNEcg,405
 test/paired/new-results/partition-new-simu/true-pair-clean-performance.csv,sha256=EgjeHR05wFVPUvq8acCzf2LhT4c7niHXpEIoc9XyX9Q,178
-test/paired/new-results/partition-new-simu/fasttree/iclust-0/fasttree.out,sha256=mqkth6pswWx75TJwW1dE_H2HQiy_d1ovFNDPJ6UlJmM,384
+test/paired/new-results/partition-new-simu/fasttree/iclust-0/fasttree.out,sha256=PhTFRztnys3BZK9tDAeVNT08qfbpwqVTF-B5yjBIosI,332
 test/paired/new-results/partition-new-simu/fasttree/iclust-0/input-seqs.fa,sha256=uHZPu9HHvPAYd4yBC8o-FOdG0jH4ACJcCMhA4dmvvlY,5918
-test/paired/new-results/partition-new-simu/fasttree/iclust-0/log,sha256=qibHlOA04zulsDy_r0_-A5Bcq6-QBJQx_2E7W83yH7A,1546
-test/paired/new-results/partition-new-simu/fasttree/iclust-1/fasttree.out,sha256=xmiiUt1hmQWLTOkbSt8J-9gsyE0sMhu0gNR1zxwUeDs,384
+test/paired/new-results/partition-new-simu/fasttree/iclust-0/log,sha256=-zBeSfTWmCs-6IqHOi1F2YADR4zdpLLqoFSUga_hVJY,1534
+test/paired/new-results/partition-new-simu/fasttree/iclust-1/fasttree.out,sha256=TKmB3fknPQhsEkQnHyp37K4pfWGMi76t_lP1QEE0PFM,332
 test/paired/new-results/partition-new-simu/fasttree/iclust-1/input-seqs.fa,sha256=hea0QDRuHtC6QGk7rioaP-qoH6JotckBqySdtILzyV8,6038
-test/paired/new-results/partition-new-simu/fasttree/iclust-1/log,sha256=kD5REEfhU0iKHiQ31wa6nMTZQJAUQ2bKrTn5g46CGlg,1547
-test/paired/new-results/partition-new-simu/fasttree/iclust-2/fasttree.out,sha256=-7o36fTja9fprw6jh3E3wMWLrqED6yfDe8h-mSrVwGw,270
+test/paired/new-results/partition-new-simu/fasttree/iclust-1/log,sha256=quazupjdE1loEMI18EOmKspmrIuMALDzWF-rJE46E5M,1535
+test/paired/new-results/partition-new-simu/fasttree/iclust-2/fasttree.out,sha256=8iAGmWkl8Cw1An8YerCdGi3dYbBCqM03erljLmfZch0,234
 test/paired/new-results/partition-new-simu/fasttree/iclust-2/input-seqs.fa,sha256=XvNc2wDAuQR3Z7JnQF3QYnPxfYpQH3KzP__OfQymTcw,4434
-test/paired/new-results/partition-new-simu/fasttree/iclust-2/log,sha256=-7Hbn-GBgPdmo9camyC3UxBmYfxxtRNXToTzvMZ2GqA,1547
-test/paired/new-results/partition-new-simu/igh+igk/partition-igh-selection-metrics.yaml,sha256=DeFoVNQJ3zbzSnuPsE8qoAvNSxalqTNYiWgyGZlV6hE,6135
+test/paired/new-results/partition-new-simu/fasttree/iclust-2/log,sha256=Ul8HYFJTP6Efp2dbz4kccx7tbQJ8EcyFDqo4HgFDdvE,1535
+test/paired/new-results/partition-new-simu/igh+igk/partition-igh-selection-metrics.yaml,sha256=qnyJc6r4fEij37iP8yKvwXdXa6oz1GlprIABjBvEac4,5954
 test/paired/new-results/partition-new-simu/igh+igk/partition-igh.yaml,sha256=TvdmgfDmKq9FTXSZ8WvsP85OsORW3qB2hqMbGZG7_Ss,43157
-test/paired/new-results/partition-new-simu/igh+igk/partition-igk-selection-metrics.yaml,sha256=nnmC59opTanhhUFLO4Nz8BeKZvZ0QBr-oblRejb8eUo,4667
+test/paired/new-results/partition-new-simu/igh+igk/partition-igk-selection-metrics.yaml,sha256=1cTAXjSz2J7eW7WYV9a1HOnBArqlO66a9M3HQiMTuA0,4635
 test/paired/new-results/partition-new-simu/igh+igk/partition-igk.yaml,sha256=9iTcIjgyiVsoADqym9El14fwDT4nU_xu2mWy_UeVHSA,46688
-test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-0/fasttree.out,sha256=fGk6KIDBUa5hk1-6aZQ7qCIhdU2eM-f4o6Y5hgx3v2Y,307
+test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-0/fasttree.out,sha256=GKZl2RGjnvAsoRfLZEkKbdkJIqBXXQPMO8jbaobGBOw,255
 test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-0/input-seqs.fa,sha256=7ENWr1tXZz6KiZ1lakxYmk6_uIniYL21PMjk_1KpcdA,3209
-test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-0/log,sha256=b96ZkV5PTrjmW5ehkno9L2OSezt6FxaKinYpMyYEqHU,1708
-test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/fasttree.out,sha256=Qy5GcANnwMQQ3RMail9Te4CcLtZm-QcECudLEMDlv3w,261
+test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-0/log,sha256=vO7VmqU3ovUHv5eeBQjBL4_OkUPmSrkzRJA-ygBuRy0,1693
+test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/fasttree.out,sha256=R_clhMra-ApsWz9L57q5eee5ouu2TRfhss6AEPherxA,217
 test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/input-seqs.fa,sha256=_AA1cnLEZd2n60CZ_FRSeUID4yggqfQyBXBbRa0ke5w,2723
-test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/log,sha256=bV_V_7tR3mG_KD3aD0zhTPuOPWv9rFz03LYZrs3Id_w,1707
-test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-0/fasttree.out,sha256=Y8lUkgKD485OevPo-Uvn4tA1qqOSyDyQqDeYxrenWIQ,178
+test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/log,sha256=zgD1BlZXS-lbKW1wD2aConItqnmcQLMp_D4OZB8DmE8,1692
+test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-0/fasttree.out,sha256=4BPvTBrBWb0QNzUIgOAifNN5zlQn2pwLeHyXL62KKAY,166
 test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-0/input-seqs.fa,sha256=xmghMTcWRSKgyfKU2rnLHgIF5uDeVXOkQH2xOPKxo-o,2825
-test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-0/log,sha256=RViVBnMIzWLyFzNukrjZzV5VF5ceEkEw3LcaA9CxH6U,1708
-test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-1/fasttree.out,sha256=b9vEOyEhrsSx3ZrgAcKfiYd4Rc4pqYA-EUWP77grjjs,170
+test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-0/log,sha256=WRAXrrNjPEfivA5dkHsOQFrvq-mnZ0O5JfZHg8SxcBY,1693
+test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-1/fasttree.out,sha256=P5UPd9qG5fqLf_kokveaVpnRPeHVVQWiLBDwzXoiUl0,162
 test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-1/input-seqs.fa,sha256=911j8S0KDMzQI3X0sXXz9MTr2dzXHPP9bsr6gL-80aE,2849
-test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-1/log,sha256=uiog7aSfsZRwFKblPIQP18Wv80cYM3N2gCjtu5zR2Jw,1685
-test/paired/new-results/partition-new-simu/igh+igl/partition-igh-selection-metrics.yaml,sha256=vVivwia0ShqHf_RBHe_LVEkYobgLRPZQdcvPqXEW79w,3675
+test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-1/log,sha256=17y7vycmh42R0tmXP3Q1R0W-73F3VQT8FlIkA-A_GY0,1670
+test/paired/new-results/partition-new-simu/igh+igl/partition-igh-selection-metrics.yaml,sha256=-GSg5bLw6XHTlo7vr-CJxMAN34UPHFYPJRKJa6jPrYI,3573
 test/paired/new-results/partition-new-simu/igh+igl/partition-igh.yaml,sha256=v-ySLOI1nWg1nouEzwIPmnZiM_uz8u6fXFUbyhSAAUc,31827
-test/paired/new-results/partition-new-simu/igh+igl/partition-igl-selection-metrics.yaml,sha256=vVQDqOQ-nJfsb42ZQ6gZMB_xFAxh_j-7opmhtR35cxw,5041
+test/paired/new-results/partition-new-simu/igh+igl/partition-igl-selection-metrics.yaml,sha256=qgF8n0tH2GOnnAf9xWL67bx56HyN_lJc7XePbhFHLOk,4981
 test/paired/new-results/partition-new-simu/igh+igl/partition-igl.yaml,sha256=XdV7rr3fQJPi3-5NvCxhHI4k5huOja8zxdI9XHWatMQ,23871
-test/paired/new-results/partition-new-simu/igh+igl/partition-igh/fasttree/iclust-0/fasttree.out,sha256=WH82iKpzInHzfWc4r3U_qVEdWDZJlmQNzmkTTJKIkrY,353
+test/paired/new-results/partition-new-simu/igh+igl/partition-igh/fasttree/iclust-0/fasttree.out,sha256=S5Rv_d2sISxiGppTGCWR4vnV6S2-o3SIu2T60vSyvpA,293
 test/paired/new-results/partition-new-simu/igh+igl/partition-igh/fasttree/iclust-0/input-seqs.fa,sha256=OeI88HIxr_EgFXgRB55XTg5PB8BgABcQWw9vnE-OGZM,3530
-test/paired/new-results/partition-new-simu/igh+igl/partition-igh/fasttree/iclust-0/log,sha256=799S8fitigSMGWzL2F95-R7qzpdVIrv_lyq1y1Pt4QA,1667
-test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-0/fasttree.out,sha256=NHP0OvZj0TMxkdx4P9ZYz596LdXSPERT_nOWjYExxL8,332
+test/paired/new-results/partition-new-simu/igh+igl/partition-igh/fasttree/iclust-0/log,sha256=cFnB9XLAkgznrURT7IMoG3ZyxCukMM5EYyDOeMxAjKI,1652
+test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-0/fasttree.out,sha256=QWFcXeSKmscljHRjrYj4BiX_FcbGyqzNhrkOngLB7UM,280
 test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-0/input-seqs.fa,sha256=bCiUVJqUAENg7ZjDOY14bKORc4OH2ZWA1b7JKeRykKw,3152
-test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-0/log,sha256=yzd01ir6l93_TUtZRUX-Xvaxi65ChT1z250cE5jcPB0,1663
+test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-0/log,sha256=awkmGilLoaJWZFIn1QT5t1sd50BdSZcL8XjAcKsvyf4,1648
 test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-1/fasttree.out,sha256=nat74FqovsJB8XnyWZRGF1qNToiKUgi5biRMFKnmzWc,129
 test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-1/input-seqs.fa,sha256=m8dp3ZNW6yAGnUBEYLhA0m3ZRzG05GhMknB0qddZVqY,2450
-test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-1/log,sha256=5OmPmWuNFNj5TehA0-ZshzzvUBD74vZ5C6ELksQdJ9c,982
-test/paired/new-results/partition-new-simu/single-chain/partition-igh.yaml,sha256=cWyV0lokRR1CFiDwWIn5hSJrw47RzPqG10tB1dzpdMQ,79467
+test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-1/log,sha256=HP-36R20uZYHM4rAgsuWzQE3orTbXBXiovN3umtphEk,967
+test/paired/new-results/partition-new-simu/single-chain/partition-igh.yaml,sha256=EBemSSX5_PkQM4Qsh6Ady4EMpBs6yL_CM_yTi-YUE5A,79468
 test/paired/new-results/partition-new-simu/single-chain/partition-igk.yaml,sha256=o-a0agImpMjjo32u7TaIrHbTW_RXJPkHXD8znweeT8Y,38067
 test/paired/new-results/partition-new-simu/single-chain/partition-igl.yaml,sha256=vEjx11N8dkIpx00_h5_qM4dis3254HeEsza7qkTre4I,18883
 test/paired/new-results/partition-new-simu-annotation-performance/plots.html,sha256=yyz8jow57HiaV1_N9RX0jn6vkR_dY0pkzr8KmBxCYlo,3143
-test/paired/new-results/partition-new-simu-annotation-performance/plots/flcount-matrix.svg,sha256=KcuVjfz8sFLzWaUI7jXJY4DAhNhCIpEJ55r9KkLALtM,29145
-test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop-log.svg,sha256=qzUMLibTtExvYHVaOh8JOC-If1gtMKDmSFmeUbtnA0o,22992
-test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop.svg,sha256=IXpnPKr52JXZSR3jIDGv4SAzXFWxddV3eJ3Uf1KynBo,19194
+test/paired/new-results/partition-new-simu-annotation-performance/plots/flcount-matrix.svg,sha256=bOJOKfMYKdVk_Ij52nabYjANUTIi73PkfDF7EI8fHPM,29145
+test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop-log.svg,sha256=NMG6r9jmIQhd98ioQu09bMBHSOGWA9fhvAeTPhrr44U,22992
+test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop.svg,sha256=ItZy-fc5aQz76F_uvL7dL2fNciPfQL7jIznSxl_9tFw,19194
 test/paired/new-results/partition-new-simu-annotation-performance/plots/func-per-drop.csv,sha256=hcFbqQj-_5cXQ7nwQk60LucTJs4Sjwctn8UhwGMrvjk,305
 test/paired/new-results/partition-new-simu-annotation-performance/plots/nonfunc-per-drop.csv,sha256=qBE54p878Cw8hi-DYn-Qq6NXA9go9d5-vDzDLrqc06k,318
 test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-after.csv,sha256=gXd78-EldIOv2K-BxoAnbGc5AZwVMvkyntT1r_p9hbs,126
-test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-after.svg,sha256=-F20M8uGYEne4ORgZn7MLeI40ImtvgamtmuIOBQQzRA,7107
+test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-after.svg,sha256=qeVEq0Dv1dGwD_rQKhi16DQQM1Omby02BW4UDKUd4E0,7107
 test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-before.csv,sha256=Cs0ubrzBHEZfguO-l9_EO8-tzijl7Ih1APSVTEafBm8,183
-test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-before.svg,sha256=ZOZdkmFv5T9i5VLsWMSJ62YjY8vAnsC4a1gTIoTA0Ek,8608
-test/paired/new-results/partition-new-simu-annotation-performance/plots/pseq-matrix.svg,sha256=HdN_HEyva-9TQpSPGXWe-vpNJ8XRcs8Asxuv1zs7Z20,13540
+test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-before.svg,sha256=Y5V4UinviLxFRRZD_9Va7sTs5seQmD37-cKtiowTCT8,8608
+test/paired/new-results/partition-new-simu-annotation-performance/plots/pseq-matrix.svg,sha256=BDKhKBcBP1JJaqMwLly0QPt7K6_M-SBrliyyz86ewcY,13540
 test/paired/new-results/partition-new-simu-annotation-performance/plots/seqs-per-droplet.csv,sha256=m73KMZ-S024dBjp6ulZUucAc38ZQwsDXYG2sbJGQMos,180
-test/paired/new-results/partition-new-simu-annotation-performance/plots/seqs-per-droplet.svg,sha256=5gnRJjuLMWQW2733Yv3H1ZqHiDPAXmNs2C7UkcrGfHE,7763
+test/paired/new-results/partition-new-simu-annotation-performance/plots/seqs-per-droplet.svg,sha256=XyLIbXBGAvzDyZIkV96OAQaRi2Rd_oQO8IpLsxaBnY0,7763
 test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct-family.csv,sha256=Apzy9JVSmNsEdPoVZxITXt6FZ4nVcwnrDvjMVw8yH-E,371
-test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct-family.svg,sha256=hjPRSs94OIJmVpgAAO1t9obAXEMkwh2Ony2aTqPw_zw,12644
+test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct-family.svg,sha256=Uz0JhR31ceb9KNIat_EhLLUiAesdO43lTYjq1Uih6RA,12644
 test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct.csv,sha256=Apzy9JVSmNsEdPoVZxITXt6FZ4nVcwnrDvjMVw8yH-E,371
-test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct.svg,sha256=D-iqS0NZEUwHLoPsRUZY0t_VhV4uBVfAaWtNgzlDpc0,12631
+test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct.svg,sha256=uTnCfrMs1JUGv9ffrkhr5ODWxDjLHUDFySo4r721840,12631
 test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-mispaired.csv,sha256=czqVh4ZxAreW2aCwKTHVad8buECSwn1eKK5RToGuESM,402
-test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-mispaired.svg,sha256=Cjiqn0MEe0LsB3Ea-fiQvYG7hxe_49MATm8iNvaLsBk,12648
+test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-mispaired.svg,sha256=_MMoqOf8v8_42G0asNFwv8ngGeHmJQKPn_cHkj9nBLo,12648
 test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-multiple.csv,sha256=1cg0nJL4pkiPxn3jM1c_31pxKPM47KXGZuVp7v-Qz1M,296
-test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-multiple.svg,sha256=3MHHzv3iSFS7CJC_cFWWqbqNpJcCzXFyHFLDKOMPVJc,7249
+test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-multiple.svg,sha256=8S3EhajO_kbl-Ow7jEkYZWyObiq0RgiNcJmva6fayJ8,7249
 test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-near-family.csv,sha256=1cg0nJL4pkiPxn3jM1c_31pxKPM47KXGZuVp7v-Qz1M,296
-test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-near-family.svg,sha256=Olqr6ymPQbcJ4ccecQb9d1ajHaCiyCjVLDBLE8FbL-s,7249
+test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-near-family.svg,sha256=lGAf4LLP6c--Hqcu3TBHW6Zq623QyfF6NoP-zPiDufk,7249
 test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-total.csv,sha256=6H8vsJkv89E5OaepY5bg1DnptEIePK6-C6QjuaBRXv4,337
-test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-total.svg,sha256=T2pUbxJe9p1TIDfARYKHWxkudnH4v-ShYqDg5qwK2gs,13482
+test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-total.svg,sha256=d5HLDAf6-jTgEhc7G9MRhufkRWAXiRKCdZVJxAvB9FA,13482
 test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-unpaired.csv,sha256=tzXelx5oSqhgkstNA-6DGK027GYT-M4TXrFGDEWNEcg,405
-test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-unpaired.svg,sha256=1UG-xvB6YfPToJkmifKzjTjC4ydKssu6MWGVywsURC0,13931
+test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-unpaired.svg,sha256=UtjeGz7u59AjKfLRxaYWMv9fMV2qrnqMvUdj8mzUVNI,13931
 test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance.csv,sha256=EgjeHR05wFVPUvq8acCzf2LhT4c7niHXpEIoc9XyX9Q,178
-test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance.svg,sha256=dLp11ulOZekZ8tcWU50AI9-wNWmw7vhbD9NMj2zZzTQ,9771
+test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance.svg,sha256=jG2KmTDPTCL1A_C1zJZaZ0_zQQQJOfLBBUkF7i3uV14,9771
 test/paired/new-results/partition-new-simu-annotation-performance/single-chain/plots/igh/hmm/boundaries/d_3p_del.csv,sha256=P0iNxvqMk9z8jTIYcGjxfKa-T2JIi3eOSh3eXPEnBvM,318
 test/paired/new-results/partition-new-simu-annotation-performance/single-chain/plots/igh/hmm/boundaries/d_5p_del.csv,sha256=G4CoyPjc1MSkQnVijOv2ysz56zGYG4i-QYelQU-un10,635
 test/paired/new-results/partition-new-simu-annotation-performance/single-chain/plots/igh/hmm/boundaries/dj_insertion.csv,sha256=kLzxSn3wfZysDk4IhTlgvEsvdNbLWYOJgMTz_nqRJHU,233
@@ -1182,7 +1182,7 @@ test/paired/new-results/seed-partition-new-simu/seeds/3542bd38d8-igh+3542bd38d8-
 test/paired/new-results/seed-partition-new-simu/seeds/3542bd38d8-igh+3542bd38d8-igk/single-chain/partition-igh.yaml,sha256=9Pxnw0p8Ug9ZMVcg7X7RMHURhxpWtpj4h93WuuVS-NY,31446
 test/paired/new-results/seed-partition-new-simu/seeds/3542bd38d8-igh+3542bd38d8-igk/single-chain/partition-igk.yaml,sha256=ZPuU2MYn7BLZmOJ6jUiH-oCa3SaZAr0jVMEAePScKxA,14687
 test/paired/new-results/seed-partition-new-simu/seeds/3542bd38d8-igh+3542bd38d8-igk/single-chain/partition-igl.yaml,sha256=Ls3u67M8CfP5yaBnfud78p7L9uwH1B0BXGkFwHf48to,6542
-test/paired/new-results/subset-partition-new-simu/merged-partition.log,sha256=nrEYLAMDClXBuMVpqCJoB_8KaF10w7duvVDFP_97Hjc,30340
+test/paired/new-results/subset-partition-new-simu/merged-partition.log,sha256=-gRZXMSFfob3eBQikmHyZ63QW7Pbyj3GsN04UAPP7IA,30272
 test/paired/new-results/subset-partition-new-simu/partition-igh.yaml,sha256=HgoqpG1_ChEuLNouoAGTWOJTKXDR9TP6y_TFxIMmprI,66188
 test/paired/new-results/subset-partition-new-simu/partition-igk.yaml,sha256=Mwg9UfLe-e0sYsvxNgiepogOj0DxuIUECIktiMu_f-A,46690
 test/paired/new-results/subset-partition-new-simu/partition-igl.yaml,sha256=Wi-WCJfj2dWt0E0eSbKaSnY9zajo9lzpZnIVw7mF9OY,19395
@@ -1206,7 +1206,7 @@ test/paired/new-results/subset-partition-new-simu/isub-0/meta.yaml,sha256=ZUaFW7
 test/paired/new-results/subset-partition-new-simu/isub-0/partition-igh.yaml,sha256=AcC85PCqK8Epm4ICu4B8q5eUjtsmlFTQwTkmMhZqQ5I,30562
 test/paired/new-results/subset-partition-new-simu/isub-0/partition-igk.yaml,sha256=TrjOFEnyjqRB1mIbZaG2dDUg0BB7h_YMn7P7NJ4siRA,24486
 test/paired/new-results/subset-partition-new-simu/isub-0/partition-igl.yaml,sha256=fc2SzIWy51agwAZcCTJZAfZW_-ddT-g0celyJsbelgY,7960
-test/paired/new-results/subset-partition-new-simu/isub-0/partition.log,sha256=B3sPpJuGFP9Q-b2PU5_3d35M7E4Cg6cfsM8ekg1To-I,24834
+test/paired/new-results/subset-partition-new-simu/isub-0/partition.log,sha256=tw7H1_16zXIZQudWe1_UoAmdy3oLAwhEZlDDXY70UXU,24021
 test/paired/new-results/subset-partition-new-simu/isub-0/igh+igk/igh.fa,sha256=vR3IfQGVf6SVv6ls-ebrcQmDTDxNu0nhjizzNbitup4,5852
 test/paired/new-results/subset-partition-new-simu/isub-0/igh+igk/igk.fa,sha256=_fxa0GOLuWDb0sfWeO4YbSmIcKwuG4F_4fMxte4dYLE,5107
 test/paired/new-results/subset-partition-new-simu/isub-0/igh+igk/partition-igh.yaml,sha256=FjL_OaOcNDHHamp3ehFMyAuU4sO4_TMXgEAPlI1kBdw,22125
@@ -1554,13 +1554,13 @@ test/paired/new-results/subset-partition-new-simu/isub-1/igk.fa,sha256=YhvxOlYRs
 test/paired/new-results/subset-partition-new-simu/isub-1/igl.fa,sha256=yJ69DSDTGc8lFbpzC2jviIEq3YZs0xK626_4pTXo74g,3852
 test/paired/new-results/subset-partition-new-simu/isub-1/input-seqs.fa,sha256=_hjE5gMIPkbluSOOYiKpYBE_w80-qfpq2sbD7dJOR0U,22361
 test/paired/new-results/subset-partition-new-simu/isub-1/meta.yaml,sha256=J_IVfe1SR66sfIKr2hcX5RXU4m8_8yPe288DhNtwlpQ,5037
-test/paired/new-results/subset-partition-new-simu/isub-1/partition-igh.yaml,sha256=CjHAnWyDZtOL-D2jB_Q0j0om0qtvEhrtZcoOSbk0gSg,45209
+test/paired/new-results/subset-partition-new-simu/isub-1/partition-igh.yaml,sha256=BiuYTVEBQq5uK6kM1ywk5H5q_ebrK7YJ_38iBuRi2eU,45209
 test/paired/new-results/subset-partition-new-simu/isub-1/partition-igk.yaml,sha256=93vPGzB3jaCjPPBEUEvqSqf2axzmd1Ry0P6-YoN7OTg,28793
 test/paired/new-results/subset-partition-new-simu/isub-1/partition-igl.yaml,sha256=rzwVZ9JijOgNZAWVW5MaiYTNW6HtQvsrqKPV_y9NT30,14925
-test/paired/new-results/subset-partition-new-simu/isub-1/partition.log,sha256=l90j-90GoR46Shp9tTpeFtJvoqnTiyD3bAAd1RuzVfc,24782
+test/paired/new-results/subset-partition-new-simu/isub-1/partition.log,sha256=utUeh9FsoiACiRHpdBXroMzjHdYT0sd5QJVebHRe-k4,23969
 test/paired/new-results/subset-partition-new-simu/isub-1/igh+igk/igh.fa,sha256=eLpqTnZF03J8ZANDLzei2lXYLU_qMIPYekhVpRgggfk,8772
 test/paired/new-results/subset-partition-new-simu/isub-1/igh+igk/igk.fa,sha256=jWCEqF1B5bXygBLb2BKWKD0rmftFl0c0X5xSEEJOtFA,5868
-test/paired/new-results/subset-partition-new-simu/isub-1/igh+igk/partition-igh.yaml,sha256=mDDRdcCUT4gmdL5IQ1D2nGxXuTxdpEUvt83fNn1K35Q,27612
+test/paired/new-results/subset-partition-new-simu/isub-1/igh+igk/partition-igh.yaml,sha256=7OOGwBLiWX7eI9gab1rd3lhRF12WYe7uyrASBEqL7Eg,27612
 test/paired/new-results/subset-partition-new-simu/isub-1/igh+igk/partition-igk.yaml,sha256=93vPGzB3jaCjPPBEUEvqSqf2axzmd1Ry0P6-YoN7OTg,28793
 test/paired/new-results/subset-partition-new-simu/isub-1/igh+igl/igh.fa,sha256=T9NTmX72vQrN_pCxgUqDlqgGNfVaX2WALpclm2g5Sko,5402
 test/paired/new-results/subset-partition-new-simu/isub-1/igh+igl/igl.fa,sha256=yJ69DSDTGc8lFbpzC2jviIEq3YZs0xK626_4pTXo74g,3852
@@ -1911,7 +1911,7 @@ test/paired/new-results/subset-partition-new-simu/isub-1/parameters/igl/sw/mute-
 test/paired/new-results/subset-partition-new-simu/isub-1/parameters/igl/sw/mute-freqs/IGLV1-40_star_01.csv,sha256=wlmXyjXP6um9drcebxNiFqu8Y8se3Vaq3m90PuGk1qQ,40711
 test/paired/new-results/subset-partition-new-simu/isub-1/parameters/igl/sw/mute-freqs/IGLV2-14_star_04.csv,sha256=FoO6JBBQE-WoPhNKRZSSr6DGn7ftVHG-Tc9lpGqfvUg,39232
 test/paired/new-results/subset-partition-new-simu/isub-1/parameters/igl/sw/mute-freqs/IGLV2-23_star_02.csv,sha256=LwFt7enEEcUy2J8FI2rSGyah2KX9uWkxxd7iiK1Bh6s,38044
-test/paired/new-results/subset-partition-new-simu/isub-1/single-chain/partition-igh.yaml,sha256=8xLEtrE4wk82nkDWIOMiPOsJKVHITqiDWsH4DUSEfuk,52871
+test/paired/new-results/subset-partition-new-simu/isub-1/single-chain/partition-igh.yaml,sha256=0UAll1us_HLFWKIFrmIgRiT7FpjK6EaI6KrD6B2W_lE,52871
 test/paired/new-results/subset-partition-new-simu/isub-1/single-chain/partition-igk.yaml,sha256=94nJbU045DaYvxi9ATPaYKvwDNLCckDjPU4jrtf9FIc,24028
 test/paired/new-results/subset-partition-new-simu/isub-1/single-chain/partition-igl.yaml,sha256=PDNytFsOkBNGJpaWpEVv8IHQBNdRcsP5_ysh9741sIY,13000
 test/paired/new-results/subset-partition-new-simu/merged-subsets/all-seqs.fa,sha256=nG0m8mt1u5iQdpraY0CBad3f6yoI_J4onoWZTMmgtPY,39625
@@ -1919,14 +1919,14 @@ test/paired/new-results/subset-partition-new-simu/merged-subsets/igh.fa,sha256=x
 test/paired/new-results/subset-partition-new-simu/merged-subsets/igk.fa,sha256=MZBiYYbDp-9UhHzT2EUlcFUW-M_ich_bOjQkklFfEL0,12706
 test/paired/new-results/subset-partition-new-simu/merged-subsets/igl.fa,sha256=kK6sdEHEtQuqfkCmk0CA3QLowzKW_SoksClM6NQexrk,6303
 test/paired/new-results/subset-partition-new-simu/merged-subsets/meta.yaml,sha256=VEwuIcg__0MgxPemPnj7hRiSKznNrW1-M5qLmuEtoq0,7453
-test/paired/new-results/subset-partition-new-simu/merged-subsets/partition-igh.yaml,sha256=m-2y7FUUrfKGQQjHfLRdkli9ZxqJWdwy49y6mVgZoQY,72849
+test/paired/new-results/subset-partition-new-simu/merged-subsets/partition-igh.yaml,sha256=Mxr0bZypGYEV8F9cGR6J5ykTQhoE1SRqfijjJTCZWL4,72849
 test/paired/new-results/subset-partition-new-simu/merged-subsets/partition-igk.yaml,sha256=Ybr2uxzr0wzPyEwrxDWDYif2gFk4UlHNPsXmufeFZhg,50990
 test/paired/new-results/subset-partition-new-simu/merged-subsets/partition-igl.yaml,sha256=dIOx35YYPOx2RQ2e2-Qyac5qegCzHf-DyhML42ZXZIA,21443
-test/paired/new-results/subset-partition-new-simu/merged-subsets/igh+igk/partition-igh.yaml,sha256=hK2xksIYaUHeJLYhP7IhSDGc9drhnSezvbN-9SillsQ,46816
+test/paired/new-results/subset-partition-new-simu/merged-subsets/igh+igk/partition-igh.yaml,sha256=MDizCAphjmXu7-4NwXBa4JaYjHTdnTmfu_sFmIpDelc,46816
 test/paired/new-results/subset-partition-new-simu/merged-subsets/igh+igk/partition-igk.yaml,sha256=Ybr2uxzr0wzPyEwrxDWDYif2gFk4UlHNPsXmufeFZhg,50990
 test/paired/new-results/subset-partition-new-simu/merged-subsets/igh+igl/partition-igh.yaml,sha256=2ip81MiUa7l716-y86dipwvwM3qg1VWlRQT-__6o4Rw,29796
 test/paired/new-results/subset-partition-new-simu/merged-subsets/igh+igl/partition-igl.yaml,sha256=dIOx35YYPOx2RQ2e2-Qyac5qegCzHf-DyhML42ZXZIA,21443
-test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/sw-cache.yaml,sha256=vThCtPLmNK6D1gKRwUYNTkXqkS475DCPSmK2D3Vp2fc,140729
+test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/sw-cache.yaml,sha256=xQmetPo615rSBCzGIsSxTVXmIy7P6cU0facYwqnv_xQ,140752
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/hmm/all-mean-mute-freqs.csv,sha256=LPJkL33RJZwT1nbvv80p_1r5J6pSyejnAb1rxjB5eU8,912
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/hmm/d_gene-probs.csv,sha256=zeYbss9bxXW-xyVRkX6eBeMhPy-qiino5f0xJ5z86DI,233
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/hmm/j_gene-probs.csv,sha256=u4L0N-3x-YChG9C2unXpDbDTVzDZgfw3aChq3fHOuSk,63
@@ -1960,7 +1960,7 @@ test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/hmm/hmms/IGHV3-33_star_01.yaml,sha256=FU4oDYBlqRgZwlQrbG23AEZneBh-icKPaswTKnXojUI,103996
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/hmm/hmms/IGHV3-7_star_01.yaml,sha256=GLt0fNZJsArlWs95oE7v2E-ZKciqmRa6plG-AWAxaCg,104240
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/hmm/hmms/IGHV4-39_star_01.yaml,sha256=GGUYeGeP3CaMWhWo4B32FWDF5ohfVAJf8_QwQ9sSkp0,104436
-test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/sw-cache.yaml,sha256=Vt9EHM9BmpyHQ4z0zRpDQJdEGanV-EOdNTv_9oq9BMM,78730
+test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/sw-cache.yaml,sha256=WnnDcjg41oRFKdwO782haRiJtxVacl2ZEhR1Q-MadRM,78753
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/hmm/all-mean-mute-freqs.csv,sha256=yR5AuVGrcUAOe72bT-nEJap_zn3AwCpaXSrFGELbDyA,740
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/hmm/d_gene-probs.csv,sha256=p07NACPyIrtcnGVLP8tHoSHCBiO_H7OazG_siOykHws,28
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/hmm/j_gene-probs.csv,sha256=40-_sM8ZQBd6J9r__bewvD1wb3DELCmaRHpLak-xa0s,75
@@ -1979,7 +1979,7 @@ test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/hmm/hmms/IGKV2-30_star_01.yaml,sha256=otPu6N94wuSVkMB8R4ZUYp0k0NLTXBreU1OCCc1VYBk,107159
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/hmm/hmms/IGKV3-11_star_01.yaml,sha256=dizIw0o2xB1DiUzb_HneMaz3yIIyxS0d2HiPCdwo2fA,102590
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/hmm/hmms/IGKV3-15_star_01.yaml,sha256=1z0A-rW4uPkaZ0u-3Vu9fxdBoNqsf8MXfaT6yjkaKxw,103093
-test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/sw-cache.yaml,sha256=3ii-heghZH98AipMy-vuqnc34FyIHE_FZBJE-nLDHzc,44415
+test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/sw-cache.yaml,sha256=2Yj_TTHZyunnqMOmkJJP-PwUpOlaTdR5miyOEjIJczE,44438
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/hmm/all-mean-mute-freqs.csv,sha256=mhl_3xQduo9KwGA20exKyZmQOOdXC5k5HnFS05ySwb0,693
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/hmm/d_gene-probs.csv,sha256=fJ9zLdtkRjPmYgE7qmoz00lDMlBYXZIvOc-N_WNztlE,28
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/hmm/j_gene-probs.csv,sha256=ng_-k77f0BCTsX-VM_EGVf0CIxPYj59BGGkibFelC60,39
@@ -6805,6 +6805,88 @@ test/ref-results/multi-annotate-new-simu-annotation-performance/sw/mutation/mute
 test/ref-results/multi-annotate-new-simu-annotation-performance/sw/mutation/muted_bases.csv,sha256=PHIIaj2iqO9j_2G9QQFo7DKsra61A4_2skRWCeeonxY,152
 test/ref-results/multi-annotate-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv,sha256=mm4bOAHI1yTIte2PooOSreMdTOTommH4cwHIJc1B4_8,97
 test/ref-results/multi-annotate-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv,sha256=mm4bOAHI1yTIte2PooOSreMdTOTommH4cwHIJc1B4_8,97
+test/ref-results/partition-new-simu/iqtree-annotations.yaml,sha256=Edl42G2aQGyrSD9WU9ODskYaJeuJOOJV3e0v0ZvcsLM,36453
+test/ref-results/partition-new-simu/raxml-annotations.yaml,sha256=m4pEnp8Iw4mDCmKU74sAcyfq8bDtdLh5Qg9GpIiC7qI,36347
+test/ref-results/partition-new-simu/fasttree/iclust-0/fasttree.out,sha256=XcHH5evr0molo9Y8cspuB3_RVy9z61LP47CPYnnJyrE,299
+test/ref-results/partition-new-simu/fasttree/iclust-0/input-seqs.fa,sha256=qokRcGSD1p1XlPUBpYFMm8HYpMKfb4ed4d5PwKMVC6E,4377
+test/ref-results/partition-new-simu/fasttree/iclust-0/log,sha256=KxTRonIVKAz4J9W6MOw1QMtmTMzbnEmR4m6TOWrpnFQ,1606
+test/ref-results/partition-new-simu/fasttree/iclust-1/fasttree.out,sha256=5z3K5mwEqkWO2UjHzeQopmc52vsptbIy7eg0dRMoVv0,138
+test/ref-results/partition-new-simu/fasttree/iclust-1/input-seqs.fa,sha256=PbcyyZtEcJqvPm8PLFeZDbICNpKJxJCMyfhdV3-dY_I,3061
+test/ref-results/partition-new-simu/fasttree/iclust-1/log,sha256=p5LSvJKs4b8pbv3tQd1SxnsmdQo7mzzMC6NfYQTPUWg,1603
+test/ref-results/partition-new-simu/fasttree/iclust-2/fasttree.out,sha256=1Fxnshag3NMB9hMWm8645aq0vWxNO7hlOqY7H4CWf3g,227
+test/ref-results/partition-new-simu/fasttree/iclust-2/input-seqs.fa,sha256=UdE9X7VYtEqKx8zo0lP2gQh9mTnpsrT_R8p0jkS_wgs,3133
+test/ref-results/partition-new-simu/fasttree/iclust-2/log,sha256=t8aHaJVd98iLpFuMXoJAdQjhZM_o6VV62XNXv7eGU44,1561
+test/ref-results/partition-new-simu/iqtree/iclust-0/input-seqs.fa,sha256=qokRcGSD1p1XlPUBpYFMm8HYpMKfb4ed4d5PwKMVC6E,4377
+test/ref-results/partition-new-simu/iqtree/iclust-0/log,sha256=V7xRj1SZLkdISR60M7CHWd3q8pudzqi-Tf7MJBo4AvE,26207
+test/ref-results/partition-new-simu/iqtree/iclust-0/out.bionj,sha256=VnCtwFSIz-btICWC0-5WO1E1kuDogHvd2JlZKkKc858,397
+test/ref-results/partition-new-simu/iqtree/iclust-0/out.ckp.gz,sha256=piVjSOwOiXOKrKrB-iFX5cDimBbR9vE9wrO3W88y82I,1370
+test/ref-results/partition-new-simu/iqtree/iclust-0/out.iqtree,sha256=lMX_NN33mvToJqf96534OvB820SP3GTY7z9-EiR4KXU,18972
+test/ref-results/partition-new-simu/iqtree/iclust-0/out.log,sha256=pKVF12qVVfl1w_jqDBho9ooljMvUHqRk84-r0tRZuzA,25933
+test/ref-results/partition-new-simu/iqtree/iclust-0/out.mldist,sha256=yvaeOl33FnTEedQLKoD-JQ_lwbElUX6ujHnm9-5369g,1587
+test/ref-results/partition-new-simu/iqtree/iclust-0/out.model.gz,sha256=hitx71hWixXcjvCC4MTRFgqnvfN7Sh0duLvA8nkmbKc,2789
+test/ref-results/partition-new-simu/iqtree/iclust-0/out.state,sha256=LUps0t6jNtZcjIUAjhttAADYM--llLttbWXR5R76S3I,154744
+test/ref-results/partition-new-simu/iqtree/iclust-0/out.treefile,sha256=KJZdKeWLaqJ6H0JPMfjTJOcxMP1vul-3mfYL2jCkClE,474
+test/ref-results/partition-new-simu/iqtree/iclust-1/input-seqs.fa,sha256=PbcyyZtEcJqvPm8PLFeZDbICNpKJxJCMyfhdV3-dY_I,3061
+test/ref-results/partition-new-simu/iqtree/iclust-1/log,sha256=euoos7ZQ5zmry1M5d_a7CY567VFdW47_JXSE5gxzVwk,23097
+test/ref-results/partition-new-simu/iqtree/iclust-1/out.bionj,sha256=xBiy3fw9fcbbymVi6K2vo1NaB5qCRJDOlVgmIB3Pf1s,225
+test/ref-results/partition-new-simu/iqtree/iclust-1/out.ckp.gz,sha256=hyhZrREiigvtsn3eldKHjpbYADjjE7Ws-fdCRRU3hvg,1078
+test/ref-results/partition-new-simu/iqtree/iclust-1/out.iqtree,sha256=NUwgSW_1kp1ojmTSk7s7c8NBITuQGn7CNIA9bRjOSVM,18345
+test/ref-results/partition-new-simu/iqtree/iclust-1/out.log,sha256=B2Zkza1gOKIXQ30C22qYbsxBcm_RtLvBuJHbIyV1LvU,22823
+test/ref-results/partition-new-simu/iqtree/iclust-1/out.mldist,sha256=JmiJZSJnPJ7LF7gUsJiEtJl_VdEBOW9WIu_KPP1Kp1E,738
+test/ref-results/partition-new-simu/iqtree/iclust-1/out.model.gz,sha256=9kLHDD82dssLyFND4vuTlxnLFFfazEf9onuO2PURqSw,2295
+test/ref-results/partition-new-simu/iqtree/iclust-1/out.state,sha256=96nKfeyz8iD27LcuAE0lS4-5yFEqsWROmy2DXt1Z9_k,97624
+test/ref-results/partition-new-simu/iqtree/iclust-1/out.treefile,sha256=X5yu8eNUiRq7wfmSt2HQZC_0pCDtF46gd_AirAT-drU,297
+test/ref-results/partition-new-simu/iqtree/iclust-2/input-seqs.fa,sha256=UdE9X7VYtEqKx8zo0lP2gQh9mTnpsrT_R8p0jkS_wgs,3133
+test/ref-results/partition-new-simu/iqtree/iclust-2/log,sha256=WZZo_dt54LAvquxlqZK5IFwajkuFmIJZcK6HbywGF9Q,23061
+test/ref-results/partition-new-simu/iqtree/iclust-2/out.bionj,sha256=gT3VNZOwbzHwqmuEIp2zv01WFfR3FoWWCMffwvZExxM,265
+test/ref-results/partition-new-simu/iqtree/iclust-2/out.ckp.gz,sha256=a25J9UCX_QUHHF04OhqtU6C26EQ7eC_7rntZu5luAZw,1511
+test/ref-results/partition-new-simu/iqtree/iclust-2/out.iqtree,sha256=NQ9WOPx35kvfRLuUEFKpHPKG3gNcc2Qlyow3X-V9AAk,18360
+test/ref-results/partition-new-simu/iqtree/iclust-2/out.log,sha256=uhoWLKn46vKZDJM0ymKCmUIM7bs6aPzC2UgLuhWpPzI,22787
+test/ref-results/partition-new-simu/iqtree/iclust-2/out.mldist,sha256=c6mlDMKuiVggVgskmmgL-5s6HehdkYcSNtFQ0YzNE-0,738
+test/ref-results/partition-new-simu/iqtree/iclust-2/out.model.gz,sha256=EqEwciko7xP4z4lZOIoCIGmqbG45YCrS3_KyfJoWF20,2682
+test/ref-results/partition-new-simu/iqtree/iclust-2/out.state,sha256=AdnHtQieIAAUfAD5xihDjs_jvGRyOK4MD65qUQrXq6A,100000
+test/ref-results/partition-new-simu/iqtree/iclust-2/out.treefile,sha256=ZgFs4XFOA5fNVAkHf53jtlgZepusXsb8FaNzLhgZdbg,297
+test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa,sha256=dD1qhdUWitysCOPB_fzD8q0uxqc5d9rU772u-B4H_l4,4305
+test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.ancestralProbs,sha256=jCthSyr9TmLQE9eDk6ffD57ZnZWoV3leC5iQ4ut_EC8,151539
+test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.ancestralStates,sha256=ZeRAW3LRg0bPRdUIvcKZUKnIaZ3aMN49E_5iCPmAGzE,3531
+test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.ancestralTree,sha256=JcYrIMQieWO8eOWVcJLZ2p-NXfBU4GA2BFKBxGcVkpE,390
+test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.bestModel,sha256=RC_gi0nfiPI-whz8G4D6xmEu6MPFO3hNQFjGvUt2Clw,130
+test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.bestTree,sha256=AVyBFzbnonp2aZbcfUoBfFOM5K598wmTygeW9OXNMYY,339
+test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.bestTreeCollapsed,sha256=qzG-u2extZaZMjGIsn3QP9cTqCm2tay1g6699ZYF4iU,273
+test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.log,sha256=X8kZviLAx0jbZ6TUyy341lefrOId39A_02Dh079R0m4,8472
+test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.mlTrees,sha256=sSWGWVL2-P9Idl30Ddyb0n66dyrdpk-52rsPCPl_jeI,6780
+test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.rba,sha256=Bq9D2q4kJLA230_ec9NpTUH20H_lQFXFu3xVKR8jwRw,1038
+test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.reduced.phy,sha256=e0mLgEzGPXAsQ64_pKCHTaiJi0tFrZac4vDTPPVo-Es,2867
+test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.startTree,sha256=_dVIoN9x9gBRGeYNkqxsnHVrNpXx_qk56hUo-gfWbVA,6780
+test/ref-results/partition-new-simu/raxml/iclust-0/log,sha256=j1uBjzxE4oE0T_XS_-DTNBcApUU0rNVLnE5Z2tpXVRI,20620
+test/ref-results/partition-new-simu/raxml/iclust-0/run.sh,sha256=gEMWBVo4Gs3uJpkIRM06r6B8WhGyfLv0FNJxCrPNSv4,522
+test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa,sha256=wZTClbgMac1YYoS8ciq2C0IdcvGUQ6luHsvHDVA3PMk,3037
+test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.ancestralProbs,sha256=h0GXJH3SNtozN6E5N6u9Sv6oH4i6SmEziKZZRjWiCa8,96273
+test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.ancestralStates,sha256=PwWoe1jgiPpl23JB5zYeKldV0O0A6JeSEbG7N2b28Co,2244
+test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.ancestralTree,sha256=eWrkoLnELDsQ6Iq4EB34SyNRFBmQhfIV4mJ0g6YyXF8,245
+test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.bestModel,sha256=Ef02kM8ESIXwOpv4HcJTS8mcpcx_Fz_Tb64u0q8Jrb0,130
+test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.bestTree,sha256=s7_bWHIiOtg7rGgxBXSXvX7kxW3dbaIUjqpXZaJogWA,215
+test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.bestTreeCollapsed,sha256=5U_axmnFreArbcfUABaVDA7aFI6HMPm8khwwIAfpj1g,160
+test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.log,sha256=uor6onVMfPvmCBPVfGVi78nrqQ1JQOgxf6sI6yeCgXQ,8490
+test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.mlTrees,sha256=1J78AJ-3UDcT5iWQThYVYHanC5aQgGJrYCkqmLEQ9TY,4300
+test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.rba,sha256=lZvX75VH6nldR0F_6Z6IWKMSWi2odB6zYBCgHdn9gU0,590
+test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.reduced.phy,sha256=DehwTtMdgt3ENF_CCIhxb116fHgw7F0Tq_egb4boL1A,1140
+test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.startTree,sha256=otlF1hh-drn91187Ec7qxSd4WSyC2vw_pmoMn1Wbpgo,4300
+test/ref-results/partition-new-simu/raxml/iclust-1/log,sha256=s0DXfoXinlAGJZv8CLEK56qdTEnwcW6xLrMtolvOt8c,19801
+test/ref-results/partition-new-simu/raxml/iclust-1/run.sh,sha256=DONLf7qStULlkx6y6Hd5DLY4F2YOd6eA8GtDEPvGHMY,522
+test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa,sha256=UdE9X7VYtEqKx8zo0lP2gQh9mTnpsrT_R8p0jkS_wgs,3133
+test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.ancestralProbs,sha256=CKfiHy-LrI7Xs76_B84mCCt00H_ECLzDecF5XSUwBd8,99441
+test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.ancestralStates,sha256=jxoIItPB5fGzeOJYG_RbT2V3Z0yx5RfEZMexbFveOko,2316
+test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.ancestralTree,sha256=mb_vBW5SHRbkYugpxI0okLWOhBBv9bBZusrlgUSTudY,245
+test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.bestModel,sha256=FUbdAmVsgLdb93_8a0GZoLV3iq12B1O6RThEf3SyLro,130
+test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.bestTree,sha256=NetuK3taF9-GWf3zcQ1h-5IG8yBb9DOL2JmiK00nmw8,215
+test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.bestTreeCollapsed,sha256=kjAO6x28pxoBskBIdZ1Ih3DXYhFAzTQtoJxn4AhH0Rs,193
+test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.log,sha256=MQeEfXfN5Wgg3uKn6X7du5w70qY4-oznzZWTbvdeeco,7915
+test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.mlTrees,sha256=8we2I0C1qCgFysYUv6Uyl6qTSnrTOSCz3EYekXe0BSo,4300
+test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.rba,sha256=irwvbRpVNNO4BxHkKrCeApDmOp04xmqxpmRbKa2UARk,770
+test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.startTree,sha256=qT8YqGIGObFu5VjATLeF397qOISjjpZ3u1zo3SQYU6Q,4300
+test/ref-results/partition-new-simu/raxml/iclust-2/log,sha256=-7yv6ZZlio8SK0P87oMPYD8Xlu_Hfr9jBOE_J5oecGM,18655
+test/ref-results/partition-new-simu/raxml/iclust-2/run.sh,sha256=FzQQZlbfRPnjCi1W9ElnX37LMkUrWq9_Ro-8DCJx8-Q,522
 test/ref-results/partition-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv,sha256=ybPnGto_Ly4XhxcAaF48lH-eTqnlFi7GDvJ4f9dXP9Y,153
 test/ref-results/partition-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv,sha256=9e7Kaol7R2sSaGRrdfRmRXRQmLKuIexslXo55oW3vv4,125
 test/ref-results/partition-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv,sha256=1uCusAdxgbGGytCri7146q90JBg6SQ2Od8Gfkj4TCp8,194
@@ -8349,8 +8431,8 @@ test/ref-results-slow/test/parameters/simu/true/mute-freqs/IGHV4-NL1_star_01.csv
 test/ref-results-slow/test/parameters/simu/true/mute-freqs/IGHV5-10-1_star_01.csv,sha256=S075HCAZnbZpAMsXeLMmMXEGVHFs_Euk1XujtFQ46y4,41974
 test/ref-results-slow/test/parameters/simu/true/mute-freqs/IGHV5-51_star_01.csv,sha256=QJGyDRqD2JezXsuMbNNXGSCM-kjaN2h4QGpgsaqTqXQ,57817
 test/ref-results-slow/test/parameters/simu/true/mute-freqs/IGHV7-4-1_star_02.csv,sha256=k5KeCR5Qa6iEF0IEHR63DDdJStqAjcZxgZOUbKDFNaY,39977
-partis_bcr-1.0.8.dist-info/METADATA,sha256=niLP_61z5lbvRzYtCXgKBDJIRerOlKaTcG4qS0moA4o,5007
-partis_bcr-1.0.8.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-partis_bcr-1.0.8.dist-info/entry_points.txt,sha256=Q-AkAQ91YwiKNHruS32ACdY4_IQdpZhpij2EuVDmdnM,44
-partis_bcr-1.0.8.dist-info/top_level.txt,sha256=J-z0poNcsv31IHB413--iOY8LoHBKiTHeybHX3abokI,7
-partis_bcr-1.0.8.dist-info/RECORD,,
+partis_bcr-1.0.9.post1.dev1.dist-info/METADATA,sha256=yVupZ-AuCskTGjyladhWsRXX1iBieDNwZgQ5b4EMkTc,5018
+partis_bcr-1.0.9.post1.dev1.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+partis_bcr-1.0.9.post1.dev1.dist-info/entry_points.txt,sha256=Q-AkAQ91YwiKNHruS32ACdY4_IQdpZhpij2EuVDmdnM,44
+partis_bcr-1.0.9.post1.dev1.dist-info/top_level.txt,sha256=J-z0poNcsv31IHB413--iOY8LoHBKiTHeybHX3abokI,7
+partis_bcr-1.0.9.post1.dev1.dist-info/RECORD,,

test/new-results/get-selection-metrics-new-simu.yaml ADDED Viewed

@@ -0,0 +1 @@

+ [{"unique_ids": ["18f4019708", "308de1d739", "5fb484a8a6", "648902c3e5", "8024ed1a22", "822801f8ab", "d024e5cab0", "ee25049b92", "efdea248af", "f47122f1f5", "9c3cedb840", "Node3", "Node4", "Node7", "Node8", "Node9", "Node10"], "lb": {"tree": "[&R] ((d024e5cab0:1e-06,(((648902c3e5:1e-06,8024ed1a22:1e-06)f47122f1f5:0.005797,(9c3cedb840:0.002895,ee25049b92:0.005817)Node3:0.011689)Node4:1e-06,(efdea248af:0.00873,(308de1d739:0.011636,(5fb484a8a6:0.014574,18f4019708:0.014595)Node10:1e-06)Node9:1e-06)Node8:1e-06)Node7:0.005798)822801f8ab:1e-06)XnaiveX;\n", "cons-dist-aa": {"18f4019708": -3, "308de1d739": -3, "5fb484a8a6": -3, "648902c3e5": -2, "8024ed1a22": -2, "822801f8ab": -2, "d024e5cab0": -2, "ee25049b92": -5, "efdea248af": -2, "f47122f1f5": -2, "9c3cedb840": -4, "Node3": -4, "Node4": 0, "Node7": 0, "Node8": 0, "Node9": 0, "Node10": 0}, "lbi": {"d024e5cab0": 0.2801608607322218, "648902c3e5": 0.11061271440567172, "8024ed1a22": 0.11061271440567172, "f47122f1f5": 0.11071240293974653, "9c3cedb840": 0.05913669618612469, "ee25049b92": 0.015977759013419548, "Node3": 0.27414446748919885, "Node4": 1.0011630202910315, "efdea248af": 0.038730228933123396, "308de1d739": 0.013839301395913987, "5fb484a8a6": 0.004908170003893425, "18f4019708": 0.004871978409914577, "Node10": 1.0011876474816883, "Node9": 1.001359279297515, "Node8": 1.0014115225350417, "Node7": 1.0013479791886484, "822801f8ab": 0.28032024071888234, "XnaiveX": 0.280282325848874}, "lbr": {"d024e5cab0": 0.0, "648902c3e5": 0.0, "8024ed1a22": 0.0, "f47122f1f5": 0.0004290045372580864, "9c3cedb840": 0.0, "ee25049b92": 0.0, "Node3": 1.4004016289350114, "Node4": 0.38165620553853996, "efdea248af": 0.0, "308de1d739": 0.0, "5fb484a8a6": 0.0, "18f4019708": 0.0, "Node10": 0.4131545254454056, "Node9": 0.7757247127900487, "Node8": 1.3637527792217161, "Node7": 5.80113879595273, "822801f8ab": 1.6241824423983948, "XnaiveX": 0.0}, "lbf": {"d024e5cab0": 0.0, "648902c3e5": 0.0, "8024ed1a22": 0.0, "f47122f1f5": 0.001818720111250772, "9c3cedb840": 0.0, "ee25049b92": 0.0, "Node3": 3.901666662881226, "Node4": 4.853695016411798, "efdea248af": 0.0, "308de1d739": 0.0, "5fb484a8a6": 0.0, "18f4019708": 0.0, "Node10": 5.13726678794429, "Node9": 7.67723343267168, "Node8": 10.139713404010699, "Node7": 14.989950389532412, "822801f8ab": 4.196476008980054, "XnaiveX": 4.195908469430096}, "aa-tree": "[&R] ((d024e5cab0:0.0,(((648902c3e5:0.0,8024ed1a22:0.0)f47122f1f5:0.017391304347826087,(9c3cedb840:0.0,ee25049b92:0.008695652173913044)Node3:0.034782608695652174)Node4:0.0,(efdea248af:0.017391304347826087,(308de1d739:0.02608695652173913,(5fb484a8a6:0.02608695652173913,18f4019708:0.02608695652173913)Node10:0.0)Node9:0.0)Node8:0.0)Node7:0.017391304347826087)822801f8ab:0.0)XnaiveX;\n", "aa-lbi": {"d024e5cab0": 0.17448865459090154, "648902c3e5": 0.0018930691410535422, "8024ed1a22": 0.0018930691410535422, "f47122f1f5": 0.0018930691410535422, "9c3cedb840": 0.16452242448111604, "ee25049b92": 1.945447201385015e-07, "Node3": 0.16452242448111604, "Node4": 1.0348146173410306, "efdea248af": 0.0018930691410535422, "308de1d739": 8.864737736556591e-05, "5fb484a8a6": 8.864737736556591e-05, "18f4019708": 8.864737736556591e-05, "Node10": 1.0348146173410306, "Node9": 1.0348146173410304, "Node8": 1.0348146173410304, "Node7": 1.0348146173410304, "822801f8ab": 0.17448865459090154, "XnaiveX": 0.17448865459090154}, "aa-lbr": {"d024e5cab0": 0.0, "648902c3e5": 0.0, "8024ed1a22": 0.0, "f47122f1f5": 0.0, "9c3cedb840": 0.0, "ee25049b92": 0.0, "Node3": 0.9531301271264627, "Node4": 0.39976116184195026, "efdea248af": 0.0, "308de1d739": 0.0, "5fb484a8a6": 0.0, "18f4019708": 0.0, "Node10": 0.4003185541453459, "Node9": 0.750746759955329, "Node8": 1.3334746177232655, "Node7": 5.995302664013174, "822801f8ab": 1.0110087688947065, "XnaiveX": 0.0}, "aa-lbf": {"d024e5cab0": 0.0, "648902c3e5": 0.0, "8024ed1a22": 0.0, "f47122f1f5": 0.0, "9c3cedb840": 0.0, "ee25049b92": 0.0, "Node3": 1.3383712061198858, "Node4": 2.805220890418995, "efdea248af": 0.0, "308de1d739": 0.0, "5fb484a8a6": 0.0, "18f4019708": 0.0, "Node10": 2.808014081136677, "Node9": 4.212021121705015, "Node8": 5.613090924798106, "Node7": 8.4183118152171, "822801f8ab": 1.4195449322866311, "XnaiveX": 1.4195449322866311}}}, {"unique_ids": ["13de8675ec", "20a0129b57", "31e052ee14", "33aaa62e12", "4233d708fe", "91796617a0", "97366cf0d8", "Node1"], "lb": {"tree": "[&R] (((97366cf0d8:0.00273,20a0129b57:0.00273)Node1:1e-06,31e052ee14:1e-06,13de8675ec:1e-06,(33aaa62e12:1e-06)91796617a0:1e-06)4233d708fe:1e-06)XnaiveX;\n", "cons-dist-aa": {"13de8675ec": 0, "20a0129b57": 0, "31e052ee14": 0, "33aaa62e12": 0, "4233d708fe": 0, "91796617a0": 0, "97366cf0d8": 0, "Node1": 0}, "lbi": {"97366cf0d8": 0.039957944651743384, "20a0129b57": 0.039957944651743384, "Node1": 0.21919224461125272, "31e052ee14": 0.21903028494799817, "13de8675ec": 0.21903028494799817, "33aaa62e12": 0.21888563594370225, "91796617a0": 0.2190303320637163, "4233d708fe": 0.2191750345980457, "XnaiveX": 0.21915764250378367}, "lbr": {"97366cf0d8": 0.0, "20a0129b57": 0.0, "Node1": 1.2698143790030876, "31e052ee14": 0.0, "13de8675ec": 0.0, "33aaa62e12": 0.0, "91796617a0": 0.00016283931644033088, "4233d708fe": 1.2730717600677643, "XnaiveX": 0.0}, "lbf": {"97366cf0d8": 0.0, "20a0129b57": 0.0, "Node1": 10.577195614616683, "31e052ee14": 0.0, "13de8675ec": 0.0, "33aaa62e12": 0.0, "91796617a0": 0.003077014099006546, "4233d708fe": 10.588666708369407, "XnaiveX": 10.587826640491166}, "aa-tree": "[&R] (((97366cf0d8:0.0,20a0129b57:0.0)Node1:0.0,31e052ee14:0.0,13de8675ec:0.0,(33aaa62e12:0.0)91796617a0:0.0)4233d708fe:0.0)XnaiveX;\n", "aa-lbi": {"97366cf0d8": -7.816792314480525e-06, "20a0129b57": -7.816792314480525e-06, "Node1": -7.816792314480525e-06, "31e052ee14": -7.816792314480525e-06, "13de8675ec": -7.816792314480525e-06, "33aaa62e12": -7.816792314480525e-06, "91796617a0": -7.816792314480525e-06, "4233d708fe": -7.816792314480525e-06, "XnaiveX": -7.816792314480525e-06}, "aa-lbr": {"97366cf0d8": 0.0, "20a0129b57": 0.0, "Node1": 0.0, "31e052ee14": 0.0, "13de8675ec": 0.0, "33aaa62e12": 0.0, "91796617a0": 0.0, "4233d708fe": 0.0, "XnaiveX": 0.0}, "aa-lbf": {"97366cf0d8": 0.0, "20a0129b57": 0.0, "Node1": 0.0, "31e052ee14": 0.0, "13de8675ec": 0.0, "33aaa62e12": 0.0, "91796617a0": 0.0, "4233d708fe": 0.0, "XnaiveX": 0.0}}}, {"unique_ids": ["162cb1691f", "17f57acf2e", "73431a9b10", "73d6c6e558", "948b83fb4d", "bf50fa2017", "c8a90cc3d7", "Node1", "Node3", "Node4", "Node5", "Node6"], "lb": {"tree": "[&R] ((c8a90cc3d7:0.016006,((((73431a9b10:0.005284)bf50fa2017:0.002644,(17f57acf2e:0.002632,162cb1691f:0.005305)Node3:0.005307)Node4:1e-06,948b83fb4d:0.005307)Node5:0.00264,73d6c6e558:0.007946)Node6:1e-06)Node1:0.002638)XnaiveX;\n", "cons-dist-aa": {"162cb1691f": -4, "17f57acf2e": -2, "73431a9b10": -1, "73d6c6e558": -4, "948b83fb4d": -1, "bf50fa2017": -1, "c8a90cc3d7": -6, "Node1": -1, "Node3": -2, "Node4": 0, "Node5": 0, "Node6": -1}, "lbi": {"c8a90cc3d7": 0.001056313333333558, "73431a9b10": 0.022614948731750913, "bf50fa2017": 0.3166073532320486, "17f57acf2e": 0.07657463186082135, "162cb1691f": 0.022384502502963897, "Node3": 0.31640963283801715, "Node4": 0.6201628266196499, "948b83fb4d": 0.06301460119113088, "Node5": 0.6201997498489367, "73d6c6e558": 0.02281019921398838, "Node6": 0.6273121481194683, "Node1": 0.6272700063647452, "XnaiveX": 0.33971513842717843}, "lbr": {"c8a90cc3d7": 0.0, "73431a9b10": 0.0, "bf50fa2017": 0.4385921655966751, "17f57acf2e": 0.0, "162cb1691f": 0.0, "Node3": 1.1183570989926281, "Node4": 0.7812198562228089, "948b83fb4d": 0.0, "Node5": 1.67970338587788, "73d6c6e558": 0.0, "Node6": 1.3233152565839676, "Node1": 3.640156724290387, "XnaiveX": 0.0}, "lbf": {"c8a90cc3d7": 0.0, "73431a9b10": 0.0, "bf50fa2017": 2.780124548468202, "17f57acf2e": 0.0, "162cb1691f": 0.0, "Node3": 4.812234014943255, "Node4": 6.482481167867299, "948b83fb4d": 0.0, "Node5": 9.2651322984344, "73d6c6e558": 0.0, "Node6": 8.494563444674098, "Node1": 11.699045596577553, "XnaiveX": 6.3360532811265395}, "aa-tree": "[&R] ((c8a90cc3d7:0.03968253968253968,((((73431a9b10:0.0)bf50fa2017:0.007936507936507936,(17f57acf2e:0.0,162cb1691f:0.015873015873015872)Node3:0.015873015873015872)Node4:0.0,948b83fb4d:0.007936507936507936)Node5:0.007936507936507936,73d6c6e558:0.023809523809523808)Node6:0.0)Node1:0.0)XnaiveX;\n", "aa-lbi": {"c8a90cc3d7": 1.0607562094404073e-07, "73431a9b10": 0.017443587693578136, "bf50fa2017": 0.017443587693578136, "17f57acf2e": 0.1727435913001429, "162cb1691f": 2.05140302349672e-06, "Node3": 0.1727435913001429, "Node4": 0.5169670843045983, "948b83fb4d": 0.017443587693578136, "Node5": 0.5169670843045983, "73d6c6e558": 4.3481144978049015e-05, "Node6": 0.5331232824754037, "Node1": 0.5331232824754037, "XnaiveX": 0.5331232824754037}, "aa-lbr": {"c8a90cc3d7": 0.0, "73431a9b10": 0.0, "bf50fa2017": 0.0, "17f57acf2e": 0.0, "162cb1691f": 0.0, "Node3": 0.9927164071332475, "Node4": 0.9517978697603359, "948b83fb4d": 0.0, "Node5": 2.640392311585568, "73d6c6e558": 0.0, "Node6": 1.0469172980331307, "Node1": 3.0939269283638917, "XnaiveX": 0.0}, "aa-lbf": {"c8a90cc3d7": 0.0, "73431a9b10": 0.0, "bf50fa2017": 0.0, "17f57acf2e": 0.0, "162cb1691f": 0.0, "Node3": 1.8098285902400761, "Node4": 3.538886528840831, "948b83fb4d": 0.0, "Node5": 5.263528996917374, "73d6c6e558": 0.0, "Node6": 3.7986628012348613, "Node1": 5.61291712745328, "XnaiveX": 5.61291712745328}}}]

test/new-results/test.log CHANGED Viewed

@@ -1,34 +1,30 @@
 [92mcache-parameters-quick-new-simu[0m   partis cache-parameters --dont-write-git-info --infname test/ref-results/test/simu.yaml --parameter-dir test/new-results/test/parameters/simu --sw-cachefname test/new-results/test/parameters/simu/sw-cache.yaml --n-max-queries 10 --random-seed 1 --n-procs 10
   --n-max-queries: stopped after reading 10 queries from input file
 caching parameters
-  vsearch: 10 / 10 v annotations (0 failed) with 2 v genes in 0.1 sec
+  vsearch: 10 / 10 v annotations (0 failed) with 2 v genes in 0.0 sec
     keeping 2 / 198 v genes
 smith-waterman  (new-allele fitting)
-  vsearch: 10 / 10 v annotations (0 failed) with 2 v genes in 0.1 sec
+  vsearch: 10 / 10 v annotations (0 failed) with 2 v genes in 0.0 sec
     running 10 procs for 10 seqs
       info for 10 / 10 = 1.000   (removed: 0 failed)
       kept 10 (1.000) unproductive
-    water time: 0.2  (ig-sw 0.0  processing 0.2)
+    water time: 0.1  (ig-sw 0.0  processing 0.1)
 smith-waterman  (writing parameters)
-  vsearch: 10 / 10 v annotations (0 failed) with 2 v genes in 0.2 sec
+  vsearch: 10 / 10 v annotations (0 failed) with 2 v genes in 0.0 sec
     running 10 procs for 10 seqs
       info for 10 / 10 = 1.000   (removed: 0 failed)
       kept 10 (1.000) unproductive
         writing sw results to test/new-results/test/parameters/simu/sw-cache.yaml
-    writing parameters to test/new-results/test/parameters/simu/sw (9.2 sec)
-    water time: 9.7  (ig-sw 9.3  processing 0.4)
+    writing parameters to test/new-results/test/parameters/simu/sw (1.2 sec)
+    water time: 1.3  (ig-sw 1.3  processing 0.0)
   writing hmms     removed 35 genes from glfo (leaving v 2  d 1  j 2)
-  note: utils.memory_usage_fraction() needs testing on platform 'Darwin' to make sure unit conversions don't need changing
-(0.3 sec)
+(0.1 sec)
 hmm
     reading output
         read 10 hmm output lines with 10 sequences in 10 events  (0 failures)
-    writing parameters to test/new-results/test/parameters/simu/hmm (0.4 sec)
-         infra time: 0.5
-      hmm step time: 0.9
+    writing parameters to test/new-results/test/parameters/simu/hmm (0.2 sec)
+         infra time: 0.2
+      hmm step time: 0.4
   writing hmms     removed 0  genes from glfo (leaving v 2  d 1  j 2)
-  note: utils.memory_usage_fraction() needs testing on platform 'Darwin' to make sure unit conversions don't need changing
-(0.3 sec)
-      total time: 11.9
+(0.1 sec)
+      total time: 2.1

test/paired/new-results/get-selection-metrics-new-simu-chosen-abs.csv CHANGED Viewed

@@ -1,11 +1,11 @@
 iclust,h_id,l_id,aa-cfrac,aa-cdist,tot-shm-aa,tot-shm-nuc-pct,lbi,lbr,aa-lbi,aa-lbr,h_family_size,l_family_size,h_v_gene,l_v_gene,h_d_gene,l_d_gene,h_j_gene,l_j_gene,h_locus,l_locus,h_imgt_cdr3_length_aa,l_imgt_cdr3_length_aa,h_shm_nuc_pct,l_shm_nuc_pct,h_shm_aa,l_shm_aa,h_has_shm_indels,l_has_shm_indels,h_aa-cfrac,l_aa-cfrac,h_aa-cdist,l_aa-cdist,h_seq_nuc,l_seq_nuc,h_seq_aa,l_seq_aa
 0,0174bcb6-cons-0-igh,b4a54dee-cons-0-igl,,,,,,,,,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,,,,,,,False,False,,,,,CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGCTCGAGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG,TAGTCTGTGCTGACGCGGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGACCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTTAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQLQESGPGLVMPSETLSLTCTGSGGSISSSSYYRGSIRQPPGKGLEWIGSIYYSGSTYYNQSLKSRVSISVDTSKNQFSLKLRSVTAADTAAYYCASEQCKTVPPTSIARDYWGQGTLVPVSSX,*SVLTRPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLTITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
-0,b02ee7754a-igh,b02ee7754a-igl,0.00423728813559322,-1,19,0.04481792717086835,0.019310368159540466,0.0,0.019310368159540466,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.06382978723404255,0.023952095808383235,15,4,True,False,0.016,0.0,-2,0,CAGCTGCAGCAGCAGGAGTCGGGCCCAAGGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGACTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGCTCGCGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG,TAGTCTGTGCTGACGCGGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGACCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTTAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQQQESGPRDW*CLRRPYPSPALALVAPSAVVVTTGARSASPQVRGWTGLGVSIIVGAPTTTSLSRVESPYP*TRPRTSSP*S*GL*PRQTRLRITVRASNVKQYLLLPSLATTGAREPWFPSPQ,*SVLTRPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLTITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
-0,8d79fca804-igh,8d79fca804-igl,0.00847457627118644,-2,20,0.046218487394957986,0.039787305283910654,0.0,0.039787305283910654,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.061170212765957445,0.029940119760479042,15,5,False,False,0.016,0.009009009009009009,-2,-1,CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGGTCGAGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG,TAGTCTGTGCTGACGCGGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCGTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCGAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGACCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTTAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQQQESGPGLVMPSETLSLTCTGSGGSISSSSYYRGSIRQPPGKGLEWIGSIYYSGSTYYNQSLKSRVSISVDTSKNQFSLKLRSVTAADTAAYYCASEQCKTVPPTSIGRDYWGQGTLVPVSSX,*SVLTRPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPELLIYGNSNRPSGVPDRFSGSKSGTSASLTITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
-0,a3baa83300-igh,a3baa83300-igl,0.012711864406779662,-3,21,0.049019607843137254,0.0045837356800101274,0.0,0.0045837356800101274,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.06914893617021277,0.02694610778443114,17,4,False,False,0.032,0.0,-4,0,CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTAAAGTGGGAGCACCTACTACAACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCTAGCAATGTAAAACAGTACCTCCTACGTCCATCGGTCGAGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG,TAGTCTGTGCTGACGCGGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGACCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCGTATGACAGCAGCCTTAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQQQESGPGLVMPSETLSLTCTGSGGSISSSSYYRGSIRQPPGKGLEWIGSIY*SGSTYYNQSLKSRVSISVDTSKNQFSLKLRSVTAADTAAYYCAS*QCKTVPPTSIGRDYWGQGTLVPVSSX,*SVLTRPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLTITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
-0,b1e56e40a1-igh,b1e56e40a1-igl,0.0211864406779661,-5,23,0.05042016806722689,0.0008112377629780348,0.0,0.0008112377629780348,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.07446808510638298,0.023952095808383235,19,4,True,False,0.048,0.0,-6,0,CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGACCCCAGGTAAGGGGCTGGAGTGGATTGGGACTATCTATTACATTACTGGGAGCACCTACTACGACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCACCTACTTCCATCGCTCGAGACTTCTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG,TAGTCTGTGCTGACGCGGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGACCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTTAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQQQESGPGLVMPSETLSLTCTGSGGSISSSSYYRGSIRQTPGKGLEWIGTIYYITGSTYYDQSLKSRVSISVDTSKNQFSLKLRSVTAADTAAYYCASEQCKTVPPTSIARDFWGQGTLVPVSSX,*SVLTRPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLTITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
-0,a2238f4e9a-igh,a2238f4e9a-igl,0.08050847457627118,-19,24,0.06162464985994398,1.2657710302861883e-12,0.0,1.2657710302861883e-12,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.09840425531914894,0.020958083832335328,21,3,True,False,0.12,0.02702702702702703,-15,-3,CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTTCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAAGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGTGAGCACCACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAACTGAGCTCTGTGACTCCCGCAGAAACGGCGGCGTATTACTGTGCGAGAAAGCAAAGCGACACAGTACCCCCCACTGTCCTCGAACGGGACTACTGGGGCCAGGGAACCCTGGTTACCGTCTCCTCAG,TAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCGCCAAGTCTGGCACCTCGGCCTCCCTGGCCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQLQESGPGLVMPSETLFLTCTVSGGSISSSSYYRGSIRQPPSKGLEWIGSIYYSVSTTTTSLSRVESPYP*TRPRTSSP*N*AL*LPQKRRRITVRESKATQYPPLSSNGTTGAREPWLPSPQ,*SVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGAKSGTSASLAITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
+0,b02ee7754a-igh,b02ee7754a-igl,0.00423728813559322,-1,19,0.04481792717086835,0.01809935006069261,0.0,0.01809935006069261,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.06382978723404255,0.023952095808383235,15,4,True,False,0.016,0.0,-2,0,CAGCTGCAGCAGCAGGAGTCGGGCCCAAGGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGACTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGCTCGCGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG,TAGTCTGTGCTGACGCGGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGACCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTTAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQQQESGPRDW*CLRRPYPSPALALVAPSAVVVTTGARSASPQVRGWTGLGVSIIVGAPTTTSLSRVESPYP*TRPRTSSP*S*GL*PRQTRLRITVRASNVKQYLLLPSLATTGAREPWFPSPQ,*SVLTRPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLTITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
+0,8d79fca804-igh,8d79fca804-igl,0.00847457627118644,-2,20,0.046218487394957986,0.03751771597389149,0.0,0.03751771597389149,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.061170212765957445,0.029940119760479042,15,5,False,False,0.016,0.009009009009009009,-2,-1,CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGGTCGAGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG,TAGTCTGTGCTGACGCGGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCGTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCGAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGACCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTTAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQQQESGPGLVMPSETLSLTCTGSGGSISSSSYYRGSIRQPPGKGLEWIGSIYYSGSTYYNQSLKSRVSISVDTSKNQFSLKLRSVTAADTAAYYCASEQCKTVPPTSIGRDYWGQGTLVPVSSX,*SVLTRPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPELLIYGNSNRPSGVPDRFSGSKSGTSASLTITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
+0,a3baa83300-igh,a3baa83300-igl,0.012711864406779662,-3,21,0.049019607843137254,0.004279582137972093,0.0,0.004279582137972093,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.06914893617021277,0.02694610778443114,17,4,False,False,0.032,0.0,-4,0,CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTAAAGTGGGAGCACCTACTACAACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCTAGCAATGTAAAACAGTACCTCCTACGTCCATCGGTCGAGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG,TAGTCTGTGCTGACGCGGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGACCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCGTATGACAGCAGCCTTAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQQQESGPGLVMPSETLSLTCTGSGGSISSSSYYRGSIRQPPGKGLEWIGSIY*SGSTYYNQSLKSRVSISVDTSKNQFSLKLRSVTAADTAAYYCAS*QCKTVPPTSIGRDYWGQGTLVPVSSX,*SVLTRPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLTITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
+0,b1e56e40a1-igh,b1e56e40a1-igl,0.0211864406779661,-5,23,0.05042016806722689,0.0007009953003826337,0.0,0.0007009953003826337,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.07446808510638298,0.023952095808383235,19,4,True,False,0.048,0.0,-6,0,CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGACCCCAGGTAAGGGGCTGGAGTGGATTGGGACTATCTATTACATTACTGGGAGCACCTACTACGACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCACCTACTTCCATCGCTCGAGACTTCTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG,TAGTCTGTGCTGACGCGGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGACCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTTAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQQQESGPGLVMPSETLSLTCTGSGGSISSSSYYRGSIRQTPGKGLEWIGTIYYITGSTYYDQSLKSRVSISVDTSKNQFSLKLRSVTAADTAAYYCASEQCKTVPPTSIARDFWGQGTLVPVSSX,*SVLTRPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLTITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
+0,a2238f4e9a-igh,a2238f4e9a-igl,0.08050847457627118,-19,24,0.06162464985994398,1.3358608458698337e-12,0.0,1.3358608458698337e-12,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.09840425531914894,0.020958083832335328,21,3,True,False,0.12,0.02702702702702703,-15,-3,CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTTCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAAGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGTGAGCACCACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAACTGAGCTCTGTGACTCCCGCAGAAACGGCGGCGTATTACTGTGCGAGAAAGCAAAGCGACACAGTACCCCCCACTGTCCTCGAACGGGACTACTGGGGCCAGGGAACCCTGGTTACCGTCTCCTCAG,TAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCGCCAAGTCTGGCACCTCGGCCTCCCTGGCCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQLQESGPGLVMPSETLFLTCTVSGGSISSSSYYRGSIRQPPSKGLEWIGSIYYSVSTTTTSLSRVESPYP*TRPRTSSP*N*AL*LPQKRRRITVRESKATQYPPLSSNGTTGAREPWLPSPQ,*SVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGAKSGTSASLAITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
 1,c67c004f-cons-1-igh,f6b67e1f-cons-1-igk,,,,,,,,,7,7,IGHV3-33*01,IGKV1-33*01,IGHD3-3*01,IGKDx-x*x,IGHJ5*02,IGKJ4*01,igh,igk,,,,,,,False,False,,,,,NNNCAGGTGCAGCTGATGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGAGGCGATTTTGGGTTTGGTTAGTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG,NNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC,XQVQLMESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVNYCAREAGGDFGFG*YGNNWFDPWGQGTLVTVSSX,XXXXXDIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPRLTFGGGTKVEIKX
-1,c0fcfe005f-igh,c0fcfe005f-igk,0.02553191489361702,-6,8,0.019204389574759947,0.009230342127102087,0.0,0.009230342127102087,0.0,7,7,IGHV3-33*01,IGKV1-33*01,IGHD3-3*01,IGKDx-x*x,IGHJ5*02,IGKJ4*01,igh,igk,20,10,0.03664921465968586,0.0,8,0,False,False,0.047244094488188976,0.0,-6,0,NNNCAGGTGCAGCTGGCGGAGTCTGGGGGAGGCGTGGTCCACCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCATCTGGATTCACCGTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTGCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCCGGGTGAGATTTTGGGTTTGGTTACTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG,NNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC,XQVQLAESGGGVVHPGRSLRLSCAASGFTVSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADCVKGRFTISRDNSKNTLYLQMNSLRAEDTAVNYCAREAG*DFGFGYYGNNWFDPWGQGTLVTVSSX,XXXXXDIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPRLTFGGGTKVEIKX
-1,d1ee7f9ce6-igh,d1ee7f9ce6-igk,0.02553191489361702,-6,7,0.01646090534979424,0.09637773660309717,0.0,0.09637773660309717,0.0,7,7,IGHV3-33*01,IGKV1-33*01,IGHD3-3*01,IGKDx-x*x,IGHJ5*02,IGKJ4*01,igh,igk,20,10,0.031413612565445025,0.0,7,0,False,False,0.047244094488188976,0.0,-6,0,NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCACCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCATCTGGATTCACCGTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGGTGAGATTTTGGGTTTGCTTACTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG,NNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC,XQVQLVESGGGVVHPGRSLRLSCAASGFTVSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVNYCAREAG*DFGFAYYGNNWFDPWGQGTLVTVSSX,XXXXXDIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPRLTFGGGTKVEIKX
-1,665985d2d1-igh,665985d2d1-igk,0.02553191489361702,-6,9,0.019204389574759947,0.008698389290064869,0.0,0.008698389290064869,0.0,7,7,IGHV3-33*01,IGKV1-33*01,IGHD3-3*01,IGKDx-x*x,IGHJ5*02,IGKJ4*01,igh,igk,20,10,0.03664921465968586,0.0,9,0,False,True,0.047244094488188976,0.0,-6,0,NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCACCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCATCTGGATTCACCGTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGGTTAGATTTTGGGTTTGGTTAGTGTGCGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG,NNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCATAAGGCGACATATTACTGTCAACAGTATGATAATCTCCCTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC,XQVQLVESGGGVVHPGRSLRLSCAASGFTVSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVNYCAREAGLDFGFG*CANNWFDPWGQGTLVTVSSX,XXXXXDIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIA*GDILLSTV**SPSAHFRRRDQGGDQT
+1,c0fcfe005f-igh,c0fcfe005f-igk,0.02553191489361702,-6,8,0.019204389574759947,0.009194049754989489,0.0,0.009194049754989489,0.0,7,7,IGHV3-33*01,IGKV1-33*01,IGHD3-3*01,IGKDx-x*x,IGHJ5*02,IGKJ4*01,igh,igk,20,10,0.03664921465968586,0.0,8,0,False,False,0.047244094488188976,0.0,-6,0,NNNCAGGTGCAGCTGGCGGAGTCTGGGGGAGGCGTGGTCCACCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCATCTGGATTCACCGTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTGCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCCGGGTGAGATTTTGGGTTTGGTTACTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG,NNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC,XQVQLAESGGGVVHPGRSLRLSCAASGFTVSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADCVKGRFTISRDNSKNTLYLQMNSLRAEDTAVNYCAREAG*DFGFGYYGNNWFDPWGQGTLVTVSSX,XXXXXDIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPRLTFGGGTKVEIKX
+1,d1ee7f9ce6-igh,d1ee7f9ce6-igk,0.02553191489361702,-6,7,0.01646090534979424,0.09699719743663368,0.0,0.09699719743663368,0.0,7,7,IGHV3-33*01,IGKV1-33*01,IGHD3-3*01,IGKDx-x*x,IGHJ5*02,IGKJ4*01,igh,igk,20,10,0.031413612565445025,0.0,7,0,False,False,0.047244094488188976,0.0,-6,0,NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCACCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCATCTGGATTCACCGTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGGTGAGATTTTGGGTTTGCTTACTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG,NNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC,XQVQLVESGGGVVHPGRSLRLSCAASGFTVSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVNYCAREAG*DFGFAYYGNNWFDPWGQGTLVTVSSX,XXXXXDIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPRLTFGGGTKVEIKX
+1,665985d2d1-igh,665985d2d1-igk,0.02553191489361702,-6,9,0.019204389574759947,0.008819474476511727,0.0,0.008819474476511727,0.0,7,7,IGHV3-33*01,IGKV1-33*01,IGHD3-3*01,IGKDx-x*x,IGHJ5*02,IGKJ4*01,igh,igk,20,10,0.03664921465968586,0.0,9,0,False,True,0.047244094488188976,0.0,-6,0,NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCACCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCATCTGGATTCACCGTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGGTTAGATTTTGGGTTTGGTTAGTGTGCGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG,NNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCATAAGGCGACATATTACTGTCAACAGTATGATAATCTCCCTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC,XQVQLVESGGGVVHPGRSLRLSCAASGFTVSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVNYCAREAGLDFGFG*CANNWFDPWGQGTLVTVSSX,XXXXXDIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIA*GDILLSTV**SPSAHFRRRDQGGDQT

test/paired/new-results/partition-new-simu/fasttree/iclust-0/fasttree.out CHANGED Viewed

	@@ -1 +1 @@
1	- (b02ee7754a_contig_igh+igl:0.~~004382130~~,(a2238f4e9a_contig_igh+igl:0.~~036055485~~,(XnaiveX:0.~~018594844~~,(0eb272ee70_contig_igh+igl:0.~~042844768~~,aa25e6c0ce_contig_igh+igl:0.~~033371995~~)0.~~825~~:0.~~005332184~~)0.970:0.~~011641835~~)0.~~990~~:0.~~015195020~~,(b1e56e40a1_contig_igh+igl:0.~~008795952~~,(8d79fca804_contig_igh+igl:0.~~002923944~~,a3baa83300_contig_igh+igl:0.~~005856600~~)0.~~761~~:0.~~001458648~~)0.~~890~~:0.~~000000005~~);
1	+ (b02ee7754a_contig_igh+igl:0.00420,(a2238f4e9a_contig_igh+igl:0.03598,(XnaiveX:0.01859,(0eb272ee70_contig_igh+igl:0.04284,aa25e6c0ce_contig_igh+igl:0.03337)0.826:0.00533)0.970:0.01172)0.989:0.01515,(b1e56e40a1_contig_igh+igl:0.00880,(8d79fca804_contig_igh+igl:0.00292,a3baa83300_contig_igh+igl:0.00586)0.779:0.00144)0.972:0.00053);

partis-bcr 1.0.8__py3-none-any.whl → 1.0.9.post1.dev1__py3-none-any.whl

partis-bcr 1.0.8py3-none-any.whl → 1.0.9.post1.dev1py3-none-any.whl