partis-bcr 1.0.8__py3-none-any.whl → 1.0.9.post1.dev1__py3-none-any.whl

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Files changed (156) hide show
  1. packages/ham/bcrham +0 -0
  2. packages/ig-sw/src/ig_align/ig-sw +0 -0
  3. {partis_bcr-1.0.8.dist-info → partis_bcr-1.0.9.post1.dev1.dist-info}/METADATA +1 -1
  4. {partis_bcr-1.0.8.dist-info → partis_bcr-1.0.9.post1.dev1.dist-info}/RECORD +155 -73
  5. test/new-results/get-selection-metrics-new-simu.yaml +1 -0
  6. test/new-results/test.log +12 -16
  7. test/paired/new-results/get-selection-metrics-new-simu-chosen-abs.csv +8 -8
  8. test/paired/new-results/partition-new-simu/fasttree/iclust-0/fasttree.out +1 -1
  9. test/paired/new-results/partition-new-simu/fasttree/iclust-0/log +8 -8
  10. test/paired/new-results/partition-new-simu/fasttree/iclust-1/fasttree.out +1 -1
  11. test/paired/new-results/partition-new-simu/fasttree/iclust-1/log +7 -7
  12. test/paired/new-results/partition-new-simu/fasttree/iclust-2/fasttree.out +1 -1
  13. test/paired/new-results/partition-new-simu/fasttree/iclust-2/log +9 -9
  14. test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-0/fasttree.out +1 -1
  15. test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-0/log +8 -8
  16. test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/fasttree.out +1 -1
  17. test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/log +9 -9
  18. test/paired/new-results/partition-new-simu/igh+igk/partition-igh-selection-metrics.yaml +1 -1
  19. test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-0/fasttree.out +1 -1
  20. test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-0/log +8 -8
  21. test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-1/fasttree.out +1 -1
  22. test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-1/log +4 -4
  23. test/paired/new-results/partition-new-simu/igh+igk/partition-igk-selection-metrics.yaml +1 -1
  24. test/paired/new-results/partition-new-simu/igh+igl/partition-igh/fasttree/iclust-0/fasttree.out +1 -1
  25. test/paired/new-results/partition-new-simu/igh+igl/partition-igh/fasttree/iclust-0/log +9 -9
  26. test/paired/new-results/partition-new-simu/igh+igl/partition-igh-selection-metrics.yaml +1 -1
  27. test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-0/fasttree.out +1 -1
  28. test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-0/log +9 -9
  29. test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-1/log +3 -3
  30. test/paired/new-results/partition-new-simu/igh+igl/partition-igl-selection-metrics.yaml +1 -1
  31. test/paired/new-results/partition-new-simu/selection-metrics.yaml +1 -1
  32. test/paired/new-results/partition-new-simu/single-chain/partition-igh.yaml +1 -1
  33. test/paired/new-results/partition-new-simu-annotation-performance/plots/flcount-matrix.svg +107 -107
  34. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop-log.svg +83 -83
  35. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop.svg +61 -61
  36. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-after.svg +18 -18
  37. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-before.svg +24 -24
  38. test/paired/new-results/partition-new-simu-annotation-performance/plots/pseq-matrix.svg +35 -35
  39. test/paired/new-results/partition-new-simu-annotation-performance/plots/seqs-per-droplet.svg +22 -22
  40. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct-family.svg +45 -45
  41. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct.svg +45 -45
  42. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-mispaired.svg +45 -45
  43. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-multiple.svg +15 -15
  44. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-near-family.svg +15 -15
  45. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-total.svg +47 -47
  46. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-unpaired.svg +48 -48
  47. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance.svg +27 -27
  48. test/paired/new-results/run-times.csv +6 -6
  49. test/paired/new-results/subset-partition-new-simu/isub-0/partition.log +86 -102
  50. test/paired/new-results/subset-partition-new-simu/isub-1/igh+igk/partition-igh.yaml +1 -1
  51. test/paired/new-results/subset-partition-new-simu/isub-1/partition-igh.yaml +1 -1
  52. test/paired/new-results/subset-partition-new-simu/isub-1/partition.log +84 -100
  53. test/paired/new-results/subset-partition-new-simu/isub-1/single-chain/partition-igh.yaml +1 -1
  54. test/paired/new-results/subset-partition-new-simu/merged-partition.log +50 -54
  55. test/paired/new-results/subset-partition-new-simu/merged-subsets/igh+igk/partition-igh.yaml +1 -1
  56. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/sw-cache.yaml +1 -1
  57. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/sw-cache.yaml +1 -1
  58. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/sw-cache.yaml +1 -1
  59. test/paired/new-results/subset-partition-new-simu/merged-subsets/partition-igh.yaml +1 -1
  60. test/paired/new-results/test.log +203 -236
  61. test/ref-results/partition-new-simu/fasttree/iclust-0/fasttree.out +1 -0
  62. test/ref-results/partition-new-simu/fasttree/iclust-0/input-seqs.fa +24 -0
  63. test/ref-results/partition-new-simu/fasttree/iclust-0/log +23 -0
  64. test/ref-results/partition-new-simu/fasttree/iclust-1/fasttree.out +1 -0
  65. test/ref-results/partition-new-simu/fasttree/iclust-1/input-seqs.fa +16 -0
  66. test/ref-results/partition-new-simu/fasttree/iclust-1/log +23 -0
  67. test/ref-results/partition-new-simu/fasttree/iclust-2/fasttree.out +1 -0
  68. test/ref-results/partition-new-simu/fasttree/iclust-2/input-seqs.fa +16 -0
  69. test/ref-results/partition-new-simu/fasttree/iclust-2/log +22 -0
  70. test/ref-results/partition-new-simu/iqtree/iclust-0/input-seqs.fa +24 -0
  71. test/ref-results/partition-new-simu/iqtree/iclust-0/log +430 -0
  72. test/ref-results/partition-new-simu/iqtree/iclust-0/out.bionj +1 -0
  73. test/ref-results/partition-new-simu/iqtree/iclust-0/out.ckp.gz +0 -0
  74. test/ref-results/partition-new-simu/iqtree/iclust-0/out.iqtree +282 -0
  75. test/ref-results/partition-new-simu/iqtree/iclust-0/out.log +429 -0
  76. test/ref-results/partition-new-simu/iqtree/iclust-0/out.mldist +13 -0
  77. test/ref-results/partition-new-simu/iqtree/iclust-0/out.model.gz +0 -0
  78. test/ref-results/partition-new-simu/iqtree/iclust-0/out.state +3529 -0
  79. test/ref-results/partition-new-simu/iqtree/iclust-0/out.treefile +1 -0
  80. test/ref-results/partition-new-simu/iqtree/iclust-1/input-seqs.fa +16 -0
  81. test/ref-results/partition-new-simu/iqtree/iclust-1/log +373 -0
  82. test/ref-results/partition-new-simu/iqtree/iclust-1/out.bionj +1 -0
  83. test/ref-results/partition-new-simu/iqtree/iclust-1/out.ckp.gz +0 -0
  84. test/ref-results/partition-new-simu/iqtree/iclust-1/out.iqtree +279 -0
  85. test/ref-results/partition-new-simu/iqtree/iclust-1/out.log +372 -0
  86. test/ref-results/partition-new-simu/iqtree/iclust-1/out.mldist +9 -0
  87. test/ref-results/partition-new-simu/iqtree/iclust-1/out.model.gz +0 -0
  88. test/ref-results/partition-new-simu/iqtree/iclust-1/out.state +2229 -0
  89. test/ref-results/partition-new-simu/iqtree/iclust-1/out.treefile +1 -0
  90. test/ref-results/partition-new-simu/iqtree/iclust-2/input-seqs.fa +16 -0
  91. test/ref-results/partition-new-simu/iqtree/iclust-2/log +375 -0
  92. test/ref-results/partition-new-simu/iqtree/iclust-2/out.bionj +1 -0
  93. test/ref-results/partition-new-simu/iqtree/iclust-2/out.ckp.gz +0 -0
  94. test/ref-results/partition-new-simu/iqtree/iclust-2/out.iqtree +274 -0
  95. test/ref-results/partition-new-simu/iqtree/iclust-2/out.log +374 -0
  96. test/ref-results/partition-new-simu/iqtree/iclust-2/out.mldist +9 -0
  97. test/ref-results/partition-new-simu/iqtree/iclust-2/out.model.gz +0 -0
  98. test/ref-results/partition-new-simu/iqtree/iclust-2/out.state +2283 -0
  99. test/ref-results/partition-new-simu/iqtree/iclust-2/out.treefile +1 -0
  100. test/ref-results/partition-new-simu/iqtree-annotations.yaml +1 -0
  101. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa +24 -0
  102. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.ancestralProbs +3461 -0
  103. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.ancestralStates +10 -0
  104. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.ancestralTree +1 -0
  105. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.bestModel +1 -0
  106. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.bestTree +1 -0
  107. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.bestTreeCollapsed +1 -0
  108. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.log +216 -0
  109. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.mlTrees +20 -0
  110. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.rba +0 -0
  111. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.reduced.phy +9 -0
  112. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.startTree +20 -0
  113. test/ref-results/partition-new-simu/raxml/iclust-0/log +454 -0
  114. test/ref-results/partition-new-simu/raxml/iclust-0/run.sh +3 -0
  115. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa +16 -0
  116. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.ancestralProbs +2203 -0
  117. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.ancestralStates +6 -0
  118. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.ancestralTree +1 -0
  119. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.bestModel +1 -0
  120. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.bestTree +1 -0
  121. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.bestTreeCollapsed +1 -0
  122. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.log +217 -0
  123. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.mlTrees +20 -0
  124. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.rba +0 -0
  125. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.reduced.phy +4 -0
  126. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.startTree +20 -0
  127. test/ref-results/partition-new-simu/raxml/iclust-1/log +440 -0
  128. test/ref-results/partition-new-simu/raxml/iclust-1/run.sh +3 -0
  129. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa +16 -0
  130. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.ancestralProbs +2275 -0
  131. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.ancestralStates +6 -0
  132. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.ancestralTree +1 -0
  133. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.bestModel +1 -0
  134. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.bestTree +1 -0
  135. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.bestTreeCollapsed +1 -0
  136. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.log +207 -0
  137. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.mlTrees +20 -0
  138. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.rba +0 -0
  139. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.startTree +20 -0
  140. test/ref-results/partition-new-simu/raxml/iclust-2/log +420 -0
  141. test/ref-results/partition-new-simu/raxml/iclust-2/run.sh +3 -0
  142. test/ref-results/partition-new-simu/raxml-annotations.yaml +1 -0
  143. bin/FastTree-macos +0 -0
  144. {partis_bcr-1.0.8.data → partis_bcr-1.0.9.post1.dev1.data}/scripts/cf-alleles.py +0 -0
  145. {partis_bcr-1.0.8.data → partis_bcr-1.0.9.post1.dev1.data}/scripts/cf-germlines.py +0 -0
  146. {partis_bcr-1.0.8.data → partis_bcr-1.0.9.post1.dev1.data}/scripts/compare-plotdirs.py +0 -0
  147. {partis_bcr-1.0.8.data → partis_bcr-1.0.9.post1.dev1.data}/scripts/extract-pairing-info.py +0 -0
  148. {partis_bcr-1.0.8.data → partis_bcr-1.0.9.post1.dev1.data}/scripts/gctree-run.py +0 -0
  149. {partis_bcr-1.0.8.data → partis_bcr-1.0.9.post1.dev1.data}/scripts/get-naive-probabilities.py +0 -0
  150. {partis_bcr-1.0.8.data → partis_bcr-1.0.9.post1.dev1.data}/scripts/parse-output.py +0 -0
  151. {partis_bcr-1.0.8.data → partis_bcr-1.0.9.post1.dev1.data}/scripts/partis-test.py +0 -0
  152. {partis_bcr-1.0.8.data → partis_bcr-1.0.9.post1.dev1.data}/scripts/split-loci.py +0 -0
  153. {partis_bcr-1.0.8.dist-info → partis_bcr-1.0.9.post1.dev1.dist-info}/WHEEL +0 -0
  154. {partis_bcr-1.0.8.dist-info → partis_bcr-1.0.9.post1.dev1.dist-info}/entry_points.txt +0 -0
  155. {partis_bcr-1.0.8.dist-info → partis_bcr-1.0.9.post1.dev1.dist-info}/licenses/COPYING +0 -0
  156. {partis_bcr-1.0.8.dist-info → partis_bcr-1.0.9.post1.dev1.dist-info}/top_level.txt +0 -0
test/paired/new-results/partition-new-simu/single-chain/partition-igh.yaml CHANGED
@@ -1 +1 @@
1
- {"version-info": {"partis-yaml": 0.1, "partis-git": ""}, "germline-info": {"locus": "igh", "functionalities": {}, "seqs": {"v": {"IGHV1-2*02": "CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV1-69*04": "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV2-70*01": "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATAC", "IGHV3-33*01": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-7*01": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV4-39*01": "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGACA"}, "d": {"IGHD1-1*01": "GGTACAACTGGAACGAC", "IGHD1-14*01": "GGTATAACCGGAACCAC", "IGHD1-26*01": "GGTATAGTGGGAGCTACTAC", "IGHD2-15*01": "AGGATATTGTAGTGGTGGTAGCTGCTACTCC", "IGHD2-2*01": "AGGATATTGTAGTAGTACCAGCTGCTATGCC", "IGHD2-21*01": "AGCATATTGTGGTGGTGATTGCTATTCC", "IGHD2-8*01": "AGGATATTGTACTAATGGTGTATGCTATACC", "IGHD2-8*02": "AGGATATTGTACTGGTGGTGTATGCTATACC", "IGHD3-10*03": "GTATTACTATGGTTCAGGGAGTTATTATAAC", "IGHD3-16*03": "GTATTATGATTACATTTGGGGGAGTTATCGTTATACC", "IGHD3-3*01": "GTATTACGATTTTTGGAGTGGTTATTATACC", "IGHD3-9*01": "GTATTACGATATTTTGACTGGTTATTATAAC", "IGHD6-19*01": "GGGTATAGCAGTGGCTGGTAC", "IGHD6-6*01": "GAGTATAGCAGCTCGTCC", "IGHD7-27*01": "CTAACTGGGGA"}, "j": {"IGHJ3*02": "TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG", "IGHJ4*02": "ACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "IGHJ5*02": "ACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "IGHJ6*02": "ATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG"}}, "cyst-positions": {"IGHV1-69*04": 285, "IGHV1-2*02": 285, "IGHV3-33*01": 285, "IGHV2-70*01": 288, "IGHV3-7*01": 285, "IGHV4-39*01": 288}, "tryp-positions": {"IGHJ4*02": 14, "IGHJ3*02": 16, "IGHJ6*02": 29, "IGHJ5*02": 17}}, "partitions": [{"logprob": -Infinity, "n_clusters": 29, "n_procs": 2, "partition": [["09f5010bd3-igh", "eee6809ad6-igh"], ["253ca59333-igh", "ddcf0ca433-igh"], ["276733008f-igh"], ["28f6e090f2-igh", "584ba32878-igh", "b9148494e2-igh"], ["3542bd38d8-igh"], ["4d37fe487e-igh", "7588f09c07-igh"], ["4f03967793-igh", "c0fcfe005f-igh", "6577576bb8-igh"], ["6cf028b770-igh", "c2cc9da0c3-igh"], ["789d880ef2-igh"], ["7c67587674-igh", "cdae60eacc-igh"], ["7d4166ae48-igh", "cfe3b29587-igh"], ["a2238f4e9a-igh"], 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"CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTTCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAAGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGTGAGCACC.ACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAACTGAGCTCTGTGACTCCCGCAGAAACGGCGGCGTATTACTGTGCGAGAAAGCAAAGCGACACAGTACCCCCCACTGTCCTCGAACGGGACTACTGGGGCCAGGGAACCCTGGTTACCGTCTCCTCAG", "", "CAGCTGCAGCAGCAGGAGTCGGGCCCAAGGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGACTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGCTCGCGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG", "CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGACCCCAGGTAAGGGGCTGGAGTGGATTGGGACTATCTATTACATTACTGGGAGCACCTACTACGACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCACCTACTTCCATCGCTCGAGACTTCTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG"], "gl_gap_seqs": ["", "", "", "", "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGAAAGCAGTGTATAGCAGTGGCTGGTACTTGGATAGCACCGGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "CAGCTGCAGCTGCAGGAGTCGGGCCCA..GGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGGTCGAGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTA...TAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGCGAGCTTTGTATAGCAGTGGCTGGTACTTCGATCGCTCGGGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "indel_reversed_seqs": ["", "", "", "", "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTTCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAAGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGTGAGCACCTACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAACTGAGCTCTGTGACTCCCGCAGAAACGGCGGCGTATTACTGTGCGAGAAAGCAAAGCGACACAGTACCCCCCACTGTCCTCGAACGGGACTACTGGGGCCAGGGAACCCTGGTTACCGTCTCCTCAG", "", "CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGACTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGCTCGCGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG", "CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGACCCCAGGTAAGGGGCTGGAGTGGATTGGGACTATCTATTATACTGGGAGCACCTACTACGACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCACCTACTTCCATCGCTCGAGACTTCTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG"], "unique_ids": ["0eb272ee70-igh", "9ed10b6475-igh", "8d79fca804-igh", "aa25e6c0ce-igh", "a2238f4e9a-igh", "a3baa83300-igh", "b02ee7754a-igh", "b1e56e40a1-igh"], "invalid": false, "v_gene": "IGHV4-39*01", "d_gene": "IGHD6-19*01", "j_gene": "IGHJ4*02", "cdr3_length": 57, "mut_freqs": [0.0797872340425532, 0.07712765957446809, 0.06648936170212766, 0.06382978723404255, 0.10372340425531915, 0.07446808510638298, 0.06914893617021277, 0.0797872340425532], "n_mutations": [30, 29, 25, 24, 39, 28, 26, 30], "input_seqs": ["CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGAAGTAGTAGTTCCTACTGGGGCCGGATCCGCCAGCCCCCAGGTAAGGGGGTGGAGTGGATTGGGAGTATCTATGATAGTGGTAGCACCTACTATAACCAGTCCCTCAAGAGTCGAGTCACCATATCTGTAGACGCGTCCAAGAAGCAGTTCTCCCTGAAGCTGAGCTCTGTGCCCGCCGCAGACACGGCTGCGTATTACTGTGCGAGAGAGTTGTGTATAGCAGTGCTTCTTGCTTGGATAGCCCCGGACTACTGGGGCTAGGGAACCCTGGTCACCGTCTCCTCTG", "CAGCTGCAGCTGCAGGAGTCGAGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTCCCTCACCTGCACTGTCTGTGGTGGCTCCATCAGCAGTAGTAGTTACGACTGGGGCTTGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGCTTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCCCTCAAGAGTCGATTCACCATATCCGTAGAGCCGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCCGACACGGCTGCGTATTACTGTCCGAGTTAGCTTTGAATAGCAGTCCCTCGTACTTCGATATCACCGGACTACTGGGACAAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGGTCGAGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG", "CAGCTGCAGCTGCAGGAGTCGAGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACGACTGGGGCTTGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGCTTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCCCTCAAGAGTCGATTCACCATATCCGTAGACCCGTCCAAGAACCAGTTCTCCCTGAAGCTGCGCTCTGTGACCGCCGCAGACACGGCTGCGTATTACTGTGCGAGCAAACATTGAATAGCAGTATCTAGTACTTCGATAGCACCGGACTACTGGGACAAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTTCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAAGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGTGAGCACCACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAACTGAGCTCTGTGACTCCCGCAGAAACGGCGGCGTATTACTGTGCGAGAAAGCAAAGCGACACAGTACCCCCCACTGTCCTCGAACGGGACTACTGGGGCCAGGGAACCCTGGTTACCGTCTCCTCAG", "CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTAAAGTGGGAGCACCTACTACAACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCTAGCAATGTAAAACAGTACCTCCTACGTCCATCGGTCGAGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG", "CAGCTGCAGCAGCAGGAGTCGGGCCCAAGGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGACTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGCTCGCGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG", "CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGACCCCAGGTAAGGGGCTGGAGTGGATTGGGACTATCTATTACATTACTGGGAGCACCTACTACGACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCACCTACTTCCATCGCTCGAGACTTCTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG"], "naive_seq": "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGCGAGCAGTGTATAGCAGTGGCTGGTACTTCGATCGCTCGGGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], [], [], []], "leader_seqs": ["", "", "", "", "", "", "", ""], "c_gene_seqs": ["", "", "", "", "", "", "", ""], "v_per_gene_support": {"IGHV4-39*01": 1.0}, "d_per_gene_support": {"IGHD6-19*01": 0.9999999999997158, "IGHD6-6*01": 2.78873533723085e-13, "IGHD1-1*01": 6.887082033900205e-16, "IGHD1-14*01": 1.9688322114139713e-17, "IGHD2-15*01": 7.89964383194357e-18, "IGHD2-2*01": 6.819899078640132e-18, "IGHD1-26*01": 1.0120198030072181e-23, "IGHD3-9*01": 5.625874062179769e-25}, "j_per_gene_support": {"IGHJ4*02": 0.9999447398907614, "IGHJ5*02": 5.526010923989229e-05}, "v_3p_del": 3, "d_5p_del": 2, "d_3p_del": 0, "j_5p_del": 8, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CGAGCAGT", "dj_insertion": "TTCGATCGCTCGG", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true, true, true], "stops": [true, true, false, true, false, true, false, false], "paired-uids": [["0eb272ee70-igl"], ["7d4166ae48-igh"], ["8d79fca804-igl"], ["aa25e6c0ce-igl"], ["a2238f4e9a-igl"], ["a3baa83300-igl"], ["b02ee7754a-igl"], ["b1e56e40a1-igl"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 288, "j": 342}}, {"has_shm_indels": [true, true, false, true, false, false, false], "qr_gap_seqs": ["NNNTTGGTGCAGCTGGTGGAGTCTGGGAGTGTATGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGGCTCTCATGGGCAGCCTCTGGATTCACCTTTACTAGCTATTTGATGAGCTGGGTTGGCCAGGCTCCAGGGAAGGGGCTGGAGTGCGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACTACTCTCCAGAGACAACGCCAAGAACTCACTGTATGTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGGTCCATCCCCTGGTGGTCCTGTGTGGGGTGACTACTGGGGCCAGGGAATCCTGGTCACCGTCTCCTCAG", "NNNTAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGGTCCAGCCTGGGGGTTCCCTGAGACTCTCCTGTGCAACCTCTGGATTCACCTTTAGTAGCTATT.GATGAGCAGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAATGGTTGGCCAACATAAAGTAAGATGGAAGTGAGAAATACTATCTGGACTCTGTGAAGGGCCGACTTACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAGCAGCCTGAGAGCCGAGGTCACGGCTGTGTATTACTGTGCGAGAGAGAATTCCGCTAGTGGACCTGTTATCGGTGACTCCTGGGGCCAGGGATTCCTGGTCTCCGTCTCCTCAG", "", "NNNGAGGTGCAACTGGTGGCGTCTGGGGGAGGCTTGGACCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGCATTCACCTTTAGTTGCTATCGAATTCGCTGGGTCCGCCAGACTCAAGGGAAGGGGCT........TGGCTAACATAAAGCAAGATGCAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGTAAATGAACAGCCTGAGAGCCGAGGGCACGGCTGTGTCTTACTGTGCGCGAGTACATTGCCCGAGTGCACGCGTCCGCGGTGACTACTGGGGCCTGCGAACCCTGGTCACCGTCTCCTCAG", "", "", ""], "gl_gap_seqs": ["NNNGAGGTGCAGCTGGTGGAGTCTGG........GGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCA.TCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGGTCCTTCCCCGAGTGGTCGCGTGCGGGGTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "NNNGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGCGTTCCGCTAGTGGACCTGATAGCGGTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "NNNGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGGTCCTTCCCCGAGTGGTCGCGTGCGGGGTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", ""], "indel_reversed_seqs": ["NNNTTGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGGCTCTCATGGGCAGCCTCTGGATTCACCTTTACTAGCTATTTGATGAGCTGGGTTGGCCAGGCTCCAGGGAAGGGGCTGGAGTGCGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACTATCTCCAGAGACAACGCCAAGAACTCACTGTATGTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGGTCCATCCCCTGGTGGTCCTGTGTGGGGTGACTACTGGGGCCAGGGAATCCTGGTCACCGTCTCCTCAG", "NNNTAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGGTCCAGCCTGGGGGTTCCCTGAGACTCTCCTGTGCAACCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCAGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAATGGTTGGCCAACATAAAGTAAGATGGAAGTGAGAAATACTATCTGGACTCTGTGAAGGGCCGACTTACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAGCAGCCTGAGAGCCGAGGTCACGGCTGTGTATTACTGTGCGAGAGAGAATTCCGCTAGTGGACCTGTTATCGGTGACTCCTGGGGCCAGGGATTCCTGGTCTCCGTCTCCTCAG", "", "NNNGAGGTGCAACTGGTGGCGTCTGGGGGAGGCTTGGACCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGCATTCACCTTTAGTTGCTATCGAATTCGCTGGGTCCGCCAGACTCAAGGGAAGGGGCTGGAGTGGGTGGCTAACATAAAGCAAGATGCAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGTAAATGAACAGCCTGAGAGCCGAGGGCACGGCTGTGTCTTACTGTGCGCGAGTACATTGCCCGAGTGCACGCGTCCGCGGTGACTACTGGGGCCTGCGAACCCTGGTCACCGTCTCCTCAG", "", "", ""], "unique_ids": ["14195e4958-igh", "21cea6e4d0-igh", "57537e5f22-igh", "cb8a759f1a-igh", "8b9ef6b10e-igh", "e11acbe3ab-igh", "eee2c7797d-igh"], "invalid": false, "v_gene": "IGHV3-7*01", "d_gene": "IGHD3-3*01", "j_gene": "IGHJ4*02", "cdr3_length": 48, "mut_freqs": [0.057692307692307696, 0.07417582417582418, 0.09615384615384616, 0.08516483516483517, 0.07417582417582418, 0.03571428571428571, 0.06043956043956044], "n_mutations": [21, 27, 35, 31, 27, 13, 22], "input_seqs": ["NNNTTGGTGCAGCTGGTGGAGTCTGGGAGTGTATGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGGCTCTCATGGGCAGCCTCTGGATTCACCTTTACTAGCTATTTGATGAGCTGGGTTGGCCAGGCTCCAGGGAAGGGGCTGGAGTGCGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACTACTCTCCAGAGACAACGCCAAGAACTCACTGTATGTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGGTCCATCCCCTGGTGGTCCTGTGTGGGGTGACTACTGGGGCCAGGGAATCCTGGTCACCGTCTCCTCAG", "NNNTAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGGTCCAGCCTGGGGGTTCCCTGAGACTCTCCTGTGCAACCTCTGGATTCACCTTTAGTAGCTATTGATGAGCAGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAATGGTTGGCCAACATAAAGTAAGATGGAAGTGAGAAATACTATCTGGACTCTGTGAAGGGCCGACTTACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAGCAGCCTGAGAGCCGAGGTCACGGCTGTGTATTACTGTGCGAGAGAGAATTCCGCTAGTGGACCTGTTATCGGTGACTCCTGGGGCCAGGGATTCCTGGTCTCCGTCTCCTCAG", "NNNTAGGTGCAGCTTGTGGAGTCTGGAGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCATGTGCAGCCTCTCGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGGTCCAGGGAAGGGGCTGGAGTGGGTGGCCGAGATAAAGCAAGATGGTAGTCAGAAATACTATCTGGACTCACTGAAGGGCCGATTCACCAACTCCAGAGACAACGCCAAGACCTCACTGTATCTGCAAATGAGCAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGGGGGTCCCGCCATTGCAACTGACACCGGTGACTACTGGGGCCAGGCAATCCTGGGCACCGTCTCCTCAG", "NNNGAGGTGCAACTGGTGGCGTCTGGGGGAGGCTTGGACCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGCATTCACCTTTAGTTGCTATCGAATTCGCTGGGTCCGCCAGACTCAAGGGAAGGGGCTTGGCTAACATAAAGCAAGATGCAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGTAAATGAACAGCCTGAGAGCCGAGGGCACGGCTGTGTCTTACTGTGCGCGAGTACATTGCCCGAGTGCACGCGTCCGCGGTGACTACTGGGGCCTGCGAACCCTGGTCACCGTCTCCTCAG", "NNNTAGCTGCAGCTGGCGGAGTCTGGGGGAGGCTTGGTCGAGTCTGGGGGGTCCATGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGTTTTTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATTAAGCAAGATGGAAGTGAGAAATTCTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTAACTGTATCTGCAAATGAACACCCTGAAAGCCGAGGACACGGCTGTGTATTATTGTGCGAGAGAGCGTTCAGCTCGGGGACATGAGCGGGCTGACTAGTGGGGCCAGGGAATCCTTGTCACCGTCTCCACAG", "NNNTAGGTGCAGCCGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTACTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGTGGCTGGAGTGTGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCAGCTCCAGAGACAACACCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACCCGGCTGTGTATTACTGTGCGAGAGACCAATCTGCTAGTGGTCTTGGGCGGGGTGACTACTGGGGCCAGGGAAGCCTGGTCACCGTCTCCTCAG", "NNNTAGGTGCAGCGGGTGGAGTATGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGAGCAGCCTCTGGATTCACCTTTACTAGCTATTGGATGAGCTGGGTCGGCCAGGCTCCAGGGAAGGGGCTGGAGTGTGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGCACTCTGTGAAGGGCCGACTCACCAGCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAATTGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGCAACCGGCTAGTGGTGTTTGGCGGGCTGAATACTGGGGCCAGGGAAGCCTGGTCACCGTCTCCTCAG"], "naive_seq": "NNNGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGACCCTTCCGCTAGTGGTCGTGGGCGGGGTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], [], []], "leader_seqs": ["", "", "", "", "", "", ""], "c_gene_seqs": ["", "", "", "", "", "", ""], "v_per_gene_support": {"IGHV3-7*01": 1.0}, "d_per_gene_support": {"IGHD3-3*01": 0.8695026798330409, "IGHD6-6*01": 0.0659765526369308, "IGHD2-8*02": 0.017983279613469058, "IGHD1-1*01": 0.01619171053372948, "IGHD2-21*01": 0.014403243378359685, "IGHD2-15*01": 0.008556578615715186, "IGHD7-27*01": 0.004573553234543954, "IGHD3-16*03": 0.0027219387872620755, "IGHD2-8*01": 5.467079719850314e-05, "IGHD3-10*03": 2.7119735086047556e-05, "IGHD1-26*01": 8.672834721155417e-06}, "j_per_gene_support": {"IGHJ4*02": 0.9999516067585879, "IGHJ5*02": 4.839324140366908e-05}, "v_3p_del": 0, "d_5p_del": 16, "d_3p_del": 9, "j_5p_del": 7, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CCCTTCCGCT", "dj_insertion": "CGTGGGCGGGG", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true, true], "stops": [false, true, true, true, true, true, true], "paired-uids": [["14195e4958-igl", "d5ddf0c2ec-igl"], ["21cea6e4d0-igl", "f094dfd68a-igh", "f094dfd68a-igk"], ["57537e5f22-igl", "7ba384a461-igh", "7ba384a461-igk"], ["7588f09c07-igh", "7588f09c07-igl"], ["51c4c0cd70-igk"], ["db63559ea9-igh", "db63559ea9-igk"], ["52387a89c7-igh", "52387a89c7-igk"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 288, "j": 333}}, {"has_shm_indels": [false, false, true, false, false, false, false], "qr_gap_seqs": ["", "", "NNNCAGGTGTAGCTGATGGTGTCTGGGGGAGGCGTGGTCCAGCCTAGGAGGTCCCTGAGACTGACTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGCCATGCACTGGGTCCGCCAGGCACCCGCCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTATTATATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACCCGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGAGGCGATTTGTGGAATGGTATTTTCGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", "", ""], "gl_gap_seqs": ["", "", "NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACT..CTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGGCTGGAGGCGATTTTTGGAGTGGTTATTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", "", ""], "indel_reversed_seqs": ["", "", "NNNCAGGTGTAGCTGATGGTGTCTGGGGGAGGCGTGGTCCAGCCTAGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGCCATGCACTGGGTCCGCCAGGCACCCGCCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTATTATATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACCCGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGAGGCGATTTGTGGAATGGTATTTTCGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", "", ""], "unique_ids": ["4f03967793-igh", "c0fcfe005f-igh", "6577576bb8-igh", "6cf028b770-igh", "c2cc9da0c3-igh", "665985d2d1-igh", "d1ee7f9ce6-igh"], "invalid": false, "v_gene": "IGHV3-33*01", "d_gene": "IGHD3-3*01", "j_gene": "IGHJ5*02", "cdr3_length": 66, "mut_freqs": [0.06282722513089005, 0.034031413612565446, 0.05235602094240838, 0.06282722513089005, 0.060209424083769635, 0.034031413612565446, 0.028795811518324606], "n_mutations": [24, 13, 20, 24, 23, 13, 11], "input_seqs": ["NNNCAGGTGCAGCTGATGGTGTCTGGGGGAGGCGGGGTCCAGCCGAGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCGGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCACCCGCCAAGGGGCTGGAGTGGGTGGCAATTATATGGTATGATGGAAGTAACAAATACTATGCAGACTCCGTGAAGGGCTGATTCACCATCTCCAGAGACAATTCCAAGAACCCGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGGTGGAGGGGATCTCTGGACTGGTCTTTATGGGAACAACTGGTTCGACCCCTGGGGACAGGGAACCCTGGTCACCGTCTCCTCAG", "NNNCAGGTGCAGCTGGCGGAGTCTGGGGGAGGCGTGGTCCACCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCATCTGGATTCACCGTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTGCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCCGGGTGAGATTTTGGGTTTGGTTACTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "NNNCAGGTGTAGCTGATGGTGTCTGGGGGAGGCGTGGTCCAGCCTAGGAGGTCCCTGAGACTGACTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGCCATGCACTGGGTCCGCCAGGCACCCGCCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTATTATATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACCCGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGAGGCGATTTGTGGAATGGTATTTTCGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "NNNCAGGCGCAGCGGATGGAGTCTGGGGGAGGCGTGGTCCAGCCTAGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCAGGATTCACCTTCAGTAGCTATGGCATGCACCGGGTCCGCCAGGCACCCGCCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATCTTGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACCCGCTGTATCTGCAAATGACAAGCCTGAGAGCCGAGGACACGGATGTGAATTACTGTGCGAGAGATACTGGCGGCGATTTTTCGAATGGCCTTTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "NNNCAGGTGCAGCTGGTGGGGTCTGGGGGAGGCGTGGTCCAGCCTGGTAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTGACCTTATGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGAGTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAATTGAACAGCTTGAGAGCCGAGGAGACGGCTGTGAATTACTGTCCGAGAGAGGGTGGATTCGAATTATGGATTTGATAGTATGGTACCAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAT", "NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCACCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCATCTGGATTCACCGTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGGTTAGATTTTGGGTTTGGTTAGTGTGCGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCACCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCATCTGGATTCACCGTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGGTGAGATTTTGGGTTTGCTTACTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "naive_seq": "NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGGCTGGCTGCGATTTTTGGAGTGGTTATTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], [], []], "leader_seqs": ["", "", "", "", "", "", ""], "c_gene_seqs": ["", "", "", "", "", "", ""], "v_per_gene_support": {"IGHV3-33*01": 1.0}, "d_per_gene_support": {"IGHD3-3*01": 0.9999999999993463, "IGHD3-16*03": 5.017788049062486e-13, "IGHD6-19*01": 1.3569563433921646e-13, "IGHD2-2*01": 1.7395288521187652e-14, "IGHD2-8*02": 5.665722335984446e-15, "IGHD3-9*01": 1.5998764298348687e-15, "IGHD2-21*01": 1.26022892996746e-15, "IGHD3-10*03": 3.949063601524849e-16}, "j_per_gene_support": {"IGHJ5*02": 1.0}, "v_3p_del": 0, "d_5p_del": 6, "d_3p_del": 3, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "GGCTGGCTG", "dj_insertion": "GGGA", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true, true], "stops": [true, true, true, false, true, true, true], "paired-uids": [["4f03967793-igk"], ["971ac047ee-igl", "c0fcfe005f-igk"], ["6577576bb8-igk"], ["6cf028b770-igk"], ["c2cc9da0c3-igk"], ["665985d2d1-igk"], ["d1ee7f9ce6-igk"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 288, "j": 351}}, {"has_shm_indels": [false, false, false, false, false, false], "qr_gap_seqs": ["", "", "", "", "", ""], "gl_gap_seqs": ["", "", "", "", "", ""], "indel_reversed_seqs": ["", "", "", "", "", ""], "unique_ids": ["3a07b6f0a9-igh", "f094dfd68a-igh", "453132f3ab-igh", "7334912e1e-igh", "f3509e0ef3-igh", "b997fa9304-igh"], "invalid": false, "v_gene": "IGHV3-33*01", "d_gene": "IGHD1-14*01", "j_gene": "IGHJ6*02", "cdr3_length": 54, "mut_freqs": [0.024324324324324326, 0.02972972972972973, 0.03513513513513514, 0.03513513513513514, 0.032432432432432434, 0.02702702702702703], "n_mutations": [9, 11, 13, 13, 12, 10], "input_seqs": ["NNNCAGGTGCAGCTGGTGGAATCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTGCTGTGCAGCGTCTGGATTCACCTTCAGTAGGTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGAGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGTTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGTCACGGCTGTGTATTACTGTGCGAGAGAGCCGGAACCGGAACAAATAGTTGCCTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGGTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGGAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGTCACGGCTGTGGATTACTGTGCGAGAGGGCCGGCACCGGAACCGCTACTTACCTACGGTATGGACGTCTGGGGCCAAGGGACCACGGGCACCGTCTCCTCAG", "NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACCCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGTCATGGACTGGGTCCGCCAGGCACCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAACAGGCAGCGGAACCAGAACTTTCCTACGGTATAGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTAGGAGGTCCCTGAGACTCTCCTTTTCAGCGTCTGGATTCACCTTCAGTAGGTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCATACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGTTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGTCCCGGCTGTGTATTACTGTGCGAGAGAGCCGGAACTGGTAGCACTAGTTCCCTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "NNNCTAGTTCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGAATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATCTGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGGGGACACGGCTGTGTATTACTGTGCGAGAGAGCCGACACAGGAACCACGAGTTTGCTACGATATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "NNNCTGGTTCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGAATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATCTGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGGGGACACGGCTGTGTATTACTGTGCGAGAGAGCCGACACAGGAACCACGAGTTCGCTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG"], "naive_seq": "NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGCCGGAACCGGAACCACGAGTTGCCTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], []], "leader_seqs": ["", "", "", "", "", ""], "c_gene_seqs": ["", "", "", "", "", ""], "v_per_gene_support": {"IGHV3-33*01": 1.0}, "d_per_gene_support": {"IGHD1-14*01": 0.9999890072849624, "IGHD1-1*01": 8.533815500524334e-06, "IGHD6-19*01": 2.4375722517369996e-06, "IGHD2-15*01": 2.012966996167797e-08, "IGHD1-26*01": 1.1976015449620852e-09}, "j_per_gene_support": {"IGHJ6*02": 1.0}, "v_3p_del": 0, "d_5p_del": 5, "d_3p_del": 0, "j_5p_del": 13, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "GCCGG", "dj_insertion": "GAGTTGC", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true], "stops": [false, false, false, false, false, false], "paired-uids": [["3a07b6f0a9-igk"], ["21cea6e4d0-igh", "21cea6e4d0-igl", "f094dfd68a-igk"], ["453132f3ab-igk"], ["7334912e1e-igk"], ["f3509e0ef3-igk"], []], "loci": ["igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 288, "j": 339}}, {"has_shm_indels": [false, false, false, true], "qr_gap_seqs": ["", "", "", "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCAGTGTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACCCCCAACTGGGGACGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "gl_gap_seqs": ["", "", "", "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATC....TCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACCCCCAACTGGGGACGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "indel_reversed_seqs": ["", "", "", "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACCCCCAACTGGGGACGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "unique_ids": ["35fc655801-igh", "7ba384a461-igh", "7d4166ae48-igh", "cfe3b29587-igh"], "invalid": false, "v_gene": "IGHV2-70*01", "d_gene": "IGHD7-27*01", "j_gene": "IGHJ4*02", "cdr3_length": 39, "mut_freqs": [0.00558659217877095, 0.00558659217877095, 0.0, 0.0], "n_mutations": [2, 2, 0, 0], "input_seqs": ["CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACGCCGAACTGGGGACGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACGCCGAACTGGGGACGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACCCCCAACTGGGGACGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCAGTGTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACCCCCAACTGGGGACGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "naive_seq": "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACCCCCAACTGGGGACGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], []], "leader_seqs": ["", "", "", ""], "c_gene_seqs": ["", "", "", ""], "v_per_gene_support": {"IGHV2-70*01": 1.0}, "d_per_gene_support": {"IGHD7-27*01": 0.9986914265191301, "IGHD1-1*01": 0.0013084010884443359, "IGHD3-9*01": 1.7239242289447176e-07}, "j_per_gene_support": {"IGHJ4*02": 0.9999990472820661, "IGHJ5*02": 9.527179352372375e-07}, "v_3p_del": 0, "d_5p_del": 2, "d_3p_del": 0, "j_5p_del": 6, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CCCC", "dj_insertion": "CG", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false], "in_frames": [true, true, true, true], "stops": [false, false, false, false], "paired-uids": [["35fc655801-igk"], ["57537e5f22-igh", "57537e5f22-igl", "7ba384a461-igk"], ["9ed10b6475-igh"], ["09f5010bd3-igh", "09f5010bd3-igl", "cfe3b29587-igk"]], "loci": ["igh", "igh", "igh", "igh"], "codon_positions": {"v": 288, "j": 324}}, {"has_shm_indels": [false, false, false], "qr_gap_seqs": ["", "", ""], "gl_gap_seqs": ["", "", ""], "indel_reversed_seqs": ["", "", ""], "unique_ids": ["28f6e090f2-igh", "584ba32878-igh", "b9148494e2-igh"], "invalid": false, "v_gene": "IGHV1-2*02", "d_gene": "IGHD6-6*01", "j_gene": "IGHJ3*02", "cdr3_length": 63, "mut_freqs": [0.0, 0.0, 0.0], "n_mutations": [0, 0, 0], "input_seqs": ["NNNCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAACCGGACTGCTCTGTATAGCAGCTCGTCCCGATGGTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG", "NNNCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAACCGGACTGCTCTGTATAGCAGCTCGTCCCGATGGTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG", "NNNCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAACCGGACTGCTCTGTATAGCAGCTCGTCCCGATGGTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG"], "naive_seq": "NNNCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAACCGGACTGCTCTGTATAGCAGCTCGTCCCGATGGTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG", "duplicates": [[], [], []], "leader_seqs": ["", "", ""], "c_gene_seqs": ["", "", ""], "v_per_gene_support": {"IGHV1-2*02": 1.0}, "d_per_gene_support": {"IGHD6-6*01": 0.9999992851640084, "IGHD6-19*01": 7.148231161657961e-07, "IGHD2-15*01": 1.287286234221371e-11}, "j_per_gene_support": {"IGHJ3*02": 1.0}, "v_3p_del": 2, "d_5p_del": 2, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "ACCGGACTGCTCT", "dj_insertion": "CGATGG", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false, false, false], "in_frames": [true, true, true], "stops": [false, false, false], "paired-uids": [["28f6e090f2-igk"], [], ["b9148494e2-igk"]], "loci": ["igh", "igh", "igh"], "codon_positions": {"v": 288, "j": 348}}, {"has_shm_indels": [false, false, false], "qr_gap_seqs": ["", "", ""], "gl_gap_seqs": ["", "", ""], "indel_reversed_seqs": ["", "", ""], "unique_ids": ["52387a89c7-igh", "a4b090d0be-igh", "e6fa048856-igh"], "invalid": false, "v_gene": "IGHV2-70*01", "d_gene": "IGHD2-8*01", "j_gene": "IGHJ4*02", "cdr3_length": 39, "mut_freqs": [0.06983240223463687, 0.061452513966480445, 0.061452513966480445], "n_mutations": [25, 22, 22], "input_seqs": ["CCGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCTCTCAGCACTAGTGGCATGTGTGTGAGCTGGATCCGTCAGCCCGCAGGGCAGGCCCAGGAGGGGCTTGGACTCATTGATTGGGATGTTCATAAATACTACAGCACATCTCTGAGGAACAGGCTTACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATAACCAACATGGACCCTGTGGATACAGTAACGTATTACTGTGGACGGATACCCTCAATTTTGTACCTGGATTTCTGGGCCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CCGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCTCTCAGCACTAGTGGCATGTGTGTGAGCTGGATCCGTCAGCCCGCAGGGCAGGCCCAGGAGGGGCTTGGACTCATTGATTGGGATGATCATAAATACTACAGCACATCTCTGAAGAACAGACTTACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGATACAGTAACGTATTACTGTGGACGGATACCCTCAATCGTGTACTTGGATTTCTGGGCCCAGGGAACCCTGGTAACCGTCTCCTCAG", "CAGGTCATCTCGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGAACTGCACCTTCTCTGGGTTCTCACTCAGCACGAGTGGAATGTGTGTGAGCTTGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTTCACTCATAGATTGGGATGATCATAAATACTACAGCAAATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACGCCCAAAAACCAGGTGGTCCTTACAATGACCAACATGTACCCTGTGGACAAAGCCACGTCTTACTGTGCACGGATACCTACTATGGTGGAATTTGAACACTGGGGCCAGGGAACCCTGGTCAGCGTCTCCTCAG"], "naive_seq": "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACCCTCAATGGTGTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], []], "leader_seqs": ["", "", ""], "c_gene_seqs": ["", "", ""], "v_per_gene_support": {"IGHV2-70*01": 1.0}, "d_per_gene_support": {"IGHD2-8*01": 0.9356524063923333, "IGHD3-3*01": 0.034166001684019884, "IGHD6-6*01": 0.014239702968522384, "IGHD3-16*03": 0.007368587605670948, "IGHD2-2*01": 0.003294528449587999, "IGHD3-10*03": 0.0026847082069778507, "IGHD2-15*01": 0.0025779616971268104, "IGHD3-9*01": 1.6102995744951492e-05}, "j_per_gene_support": {"IGHJ4*02": 0.9999996325455065, "IGHJ5*02": 3.6745448825167223e-07}, "v_3p_del": 0, "d_5p_del": 13, "d_3p_del": 11, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CCTC", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false], "in_frames": [true, true, true], "stops": [false, false, false], "paired-uids": [["52387a89c7-igk", "eee2c7797d-igh"], ["8807c8ff04-igl", "a4b090d0be-igk"], ["e6fa048856-igk"]], "loci": ["igh", "igh", "igh"], "codon_positions": {"v": 288, "j": 324}}, {"has_shm_indels": [true, false], "qr_gap_seqs": ["NNNCAGGTCCAGCTGCTGCAGCCTGGGGCTGAGCTGAAGAAGC............TGCAGGTCTCCTGCAAGGCTTCTGGAGGCACGTTCAGCAGCTTTGCTATCAACTGGGTGAGACAGGCCCCTGGACAAGGGCTTAGGGAGGTCAGGTAGGAGTGGATGGGAAGGATCATCCCTATCCGTGGTATAGCAAACTTCGCACAGAAGTTTCAGGGTGGAGTCACGATTCCCGCGGAAAAATCCACGATGCCAGCCTACATGGAGGTAAGCAGCCTTAGATCCGAGGACACGCTCGTGTATTACTGTGAGAGCCACCACGAGTTATGTCATAAAAATTACTTTGACTATTGGGGCCAGGGAACCCTGGTCACCGTTTGCTCAG", ""], "gl_gap_seqs": ["NNNCAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTT...............GAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGCCGCCACGCGTTATACCATAAAACTTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", ""], "indel_reversed_seqs": ["NNNCAGGTCCAGCTGCTGCAGCCTGGGGCTGAGCTGAAGAAGCCTGGGTCCTCGGTGCAGGTCTCCTGCAAGGCTTCTGGAGGCACGTTCAGCAGCTTTGCTATCAACTGGGTGAGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCGTGGTATAGCAAACTTCGCACAGAAGTTTCAGGGTGGAGTCACGATTCCCGCGGAAAAATCCACGATGCCAGCCTACATGGAGGTAAGCAGCCTTAGATCCGAGGACACGCTCGTGTATTACTGTGAGAGCCACCACGAGTTATGTCATAAAAATTACTTTGACTATTGGGGCCAGGGAACCCTGGTCACCGTTTGCTCAG", ""], "unique_ids": ["09f5010bd3-igh", "eee6809ad6-igh"], "invalid": false, "v_gene": "IGHV1-69*04", "d_gene": "IGHD3-16*03", "j_gene": "IGHJ4*02", "cdr3_length": 48, "mut_freqs": [0.09065934065934066, 0.09065934065934066], "n_mutations": [33, 33], "input_seqs": ["NNNCAGGTCCAGCTGCTGCAGCCTGGGGCTGAGCTGAAGAAGCTGCAGGTCTCCTGCAAGGCTTCTGGAGGCACGTTCAGCAGCTTTGCTATCAACTGGGTGAGACAGGCCCCTGGACAAGGGCTTAGGGAGGTCAGGTAGGAGTGGATGGGAAGGATCATCCCTATCCGTGGTATAGCAAACTTCGCACAGAAGTTTCAGGGTGGAGTCACGATTCCCGCGGAAAAATCCACGATGCCAGCCTACATGGAGGTAAGCAGCCTTAGATCCGAGGACACGCTCGTGTATTACTGTGAGAGCCACCACGAGTTATGTCATAAAAATTACTTTGACTATTGGGGCCAGGGAACCCTGGTCACCGTTTGCTCAG", "NNNCAGGTCGAGCTGCTGCAGCCTGGGGCTGAGCTGAAGAAGCCTGGGGCCTCGCTGCAGGTCTCCTGCAAGGCTTCTGGAGGCACGTTCAGCAGCTTTGCTATCAACTGGGTGAGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCTGTGGTATAGCAAACTTCGCACAGAAGTTTCAGGGTTGAGTCACGATTCCCGCGGAAAAATCCACGATGCCAGCCTACATGGAGCTAAGCAGCCTGAGATCCGAGGACACGGTCGTGTATAACTGTGAGAGCCGCAACACGTTATATCATAAAACTAACTTTGACTATTGGGGCCAGGGAACCCTGGTCACCGTTTCCTCAG"], "naive_seq": "NNNCAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGCCGCCACGCGTTATACCATAAAACTTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], []], "leader_seqs": ["", ""], "c_gene_seqs": ["", ""], "v_per_gene_support": {"IGHV1-69*04": 1.0}, "d_per_gene_support": {"IGHD3-16*03": 0.8729835847356453, "IGHD3-3*01": 0.11594219551514155, "IGHD3-10*03": 0.010084773906673223, "IGHD3-9*01": 0.0009894458425070308}, "j_per_gene_support": {"IGHJ4*02": 0.9999999999926672, "IGHJ5*02": 7.306826995028274e-12}, "v_3p_del": 3, "d_5p_del": 28, "d_3p_del": 0, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CCGCCACG", "dj_insertion": "ATAAAACT", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [true, true], "paired-uids": [["09f5010bd3-igl", "cfe3b29587-igh", "cfe3b29587-igk"], ["bc11af4843-igh", "bc11af4843-igk", "eee6809ad6-igl"]], "loci": ["igh", "igh"], "codon_positions": {"v": 288, "j": 333}}, {"has_shm_indels": [false, false], "qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "unique_ids": ["253ca59333-igh", "ddcf0ca433-igh"], "invalid": false, "v_gene": "IGHV4-39*01", "d_gene": "IGHD6-19*01", "j_gene": "IGHJ4*02", "cdr3_length": 57, "mut_freqs": [0.05053191489361702, 0.047872340425531915], "n_mutations": [19, 18], "input_seqs": ["CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTCCCTCACCTGCACTGTCTCTGTTGGCTCCATCAGCAGAAGTAGTTACTACTGCGGCCCGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGATTCGGAGTATCTATTATAGTGGGAGCACCTACTACATCCAGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGCGTATTACTGTGCGAGCCAACCATGCATATCAGTACCTCCTACTAAACTCTCGCAAGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTCCCTCACCTGCACTGTCTCTGTTGGCTCCATCAGCAGAAGTAGTTACTACTGCGGCCCGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGATTCGGAGTATCTATTATAGTGGGAGCACCTACTACATCCAGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGCGTATTACTGTGCGAGCCAGCCTTGCATATCAGTACCTCCTACAAAACTCTCGCAAGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "naive_seq": "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGCCAGCCTTGCATAGCAGTGGCTGGTACTAAACTCTCGCAAGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], []], "leader_seqs": ["", ""], "c_gene_seqs": ["", ""], "v_per_gene_support": {"IGHV4-39*01": 1.0}, "d_per_gene_support": {"IGHD6-19*01": 0.985988534691648, "IGHD2-2*01": 0.013036742622861367, "IGHD2-15*01": 0.0009747226855021757}, "j_per_gene_support": {"IGHJ4*02": 0.9999998272976292, "IGHJ5*02": 1.7270236239524066e-07}, "v_3p_del": 3, "d_5p_del": 4, "d_3p_del": 0, "j_5p_del": 8, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CCAGCCTTGC", "dj_insertion": "TAAACTCTCGCAA", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [false, false], "paired-uids": [["253ca59333-igl", "b739ce37b7-igh", "b739ce37b7-igl"], ["ddcf0ca433-igl"]], "loci": ["igh", "igh"], "codon_positions": {"v": 288, "j": 342}}, {"has_shm_indels": [false, false], "qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "unique_ids": ["28ce45b82a-igh", "be186138e0-igh"], "invalid": false, "v_gene": "IGHV1-69*04", "d_gene": "IGHD1-26*01", "j_gene": "IGHJ4*02", "cdr3_length": 48, "mut_freqs": [0.0, 0.0], "n_mutations": [0, 0], "input_seqs": ["NNNCAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGCGTATAGTGGGAGCTACTACTTACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "NNNCAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGCGTATAGTGGGAGCTACTACTTACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "naive_seq": "NNNCAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGCGTATAGTGGGAGCTACTACTTACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], []], "leader_seqs": ["", ""], "c_gene_seqs": ["", ""], "v_per_gene_support": {"IGHV1-69*04": 1.0}, "d_per_gene_support": {"IGHD1-26*01": 0.9999999999994387, "IGHD2-15*01": 5.621796129949252e-13}, "j_per_gene_support": {"IGHJ4*02": 0.9999999998758256, "IGHJ5*02": 1.2417242399287063e-10}, "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "GC", "dj_insertion": "TT", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [false, false], "paired-uids": [["28ce45b82a-igk"], ["be186138e0-igk"]], "loci": ["igh", "igh"], "codon_positions": {"v": 288, "j": 333}}, {"has_shm_indels": [false, false], "qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "unique_ids": ["4d37fe487e-igh", "7588f09c07-igh"], "invalid": false, "v_gene": "IGHV4-39*01", "d_gene": "IGHD6-19*01", "j_gene": "IGHJ4*02", "cdr3_length": 57, "mut_freqs": [0.07712765957446809, 0.05319148936170213], "n_mutations": [29, 20], "input_seqs": ["CAGCTGCAGCTGCAGGAGTCGAACCCAGGACTGGTGATGCCTTCGGAGACCTTGTCCCTCACCTGCACTGTCTATGGTGGCTCCATCACCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGCTTGGGAGTATCTCTTATAGTGGGAGCACATACTACAACCAGTCACTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCATGAACCAGTTCTCCCTGAAGCTGAGCTCTGTCACCGCCGCAGACACGGCTGCGTCTTACTGTGCGAGCCTGCCTAGAAGAGAAGTACCTCTTTATAAGATAGCTCAAGACTACTGGGACCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGCTGCAGCTGCAGGAGTCGAGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGCTTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCAGTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGATGAGCTCTGTGACCGCCGCAGACACGGCTGCGTATTACTGTGCGAGCCCTCCTTGGATAGCAGGGCTTCGTTCAAAGATAGCACTAGACTACTGGGACCAGGGAACCCTGGTCACCGTCTCCTCAG"], "naive_seq": "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGCCCGCCTTGTATAGCAGTGGCTGGTACTAAGATAGCTCTAGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], []], "leader_seqs": ["", ""], "c_gene_seqs": ["", ""], "v_per_gene_support": {"IGHV4-39*01": 1.0}, "d_per_gene_support": {"IGHD6-19*01": 0.9979249225392985, "IGHD3-16*03": 0.0011280562801319067, "IGHD6-6*01": 0.0008840170276921409, "IGHD2-2*01": 6.300369179198006e-05, "IGHD3-10*03": 4.610787637441733e-10}, "j_per_gene_support": {"IGHJ4*02": 0.99999985609379, "IGHJ5*02": 1.439061992227603e-07}, "v_3p_del": 3, "d_5p_del": 2, "d_3p_del": 0, "j_5p_del": 8, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CCCGCCTT", "dj_insertion": "TAAGATAGCTCTA", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [false, false], "paired-uids": [["4d37fe487e-igl"], ["7588f09c07-igl", "cb8a759f1a-igh"]], "loci": ["igh", "igh"], "codon_positions": {"v": 288, "j": 342}}, {"has_shm_indels": [false, false], "qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "unique_ids": ["7c67587674-igh", "cdae60eacc-igh"], "invalid": false, "v_gene": "IGHV3-33*01", "d_gene": "IGHD3-3*01", "j_gene": "IGHJ5*02", "cdr3_length": 66, "mut_freqs": [0.028795811518324606, 0.028795811518324606], "n_mutations": [11, 11], "input_seqs": ["NNNCGGGTGCAGCTGATGGAGTCTGGGGGAGGCGTGGTACAGCCTGGGAGGTCCCTGAGACTCTCCTATGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCGGCCAGGCTCCCGCCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATGCGCCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGATGCGTTTTTTGGAATGGTCCGTCAAGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "NNNCGGGTGCAGCTGATGGAGTCTGGGGGAGGCGTGGTACAGCCTGGGAGGTCCCTGAGACTCTCCTATGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCGGCCAGGCTCCCGCCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATGCGCCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGATGCGTTTTTTGGAATGGTCCGTCAAGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "naive_seq": 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"CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACTACTAATGGTGGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGHV2-70*01": 1.0}, "d_per_gene_support": {"IGHD2-8*01": 0.9889562998364885, "IGHD2-21*01": 0.01104370016352039}, "j_per_gene_support": {"IGHJ4*02": 0.999992566973389, "IGHJ5*02": 7.433026603994982e-06}, "v_3p_del": 0, "d_5p_del": 9, "d_3p_del": 11, "j_5p_del": 8, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "paired-uids": [["db63559ea9-igk", "e11acbe3ab-igh"]], "loci": ["igh"], "codon_positions": {"v": 288, "j": 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1
+ {"version-info": {"partis-yaml": 0.1, "partis-git": ""}, "germline-info": {"locus": "igh", "functionalities": {}, "seqs": {"v": {"IGHV1-2*02": "CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV1-69*04": "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV2-70*01": "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATAC", "IGHV3-33*01": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-7*01": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV4-39*01": "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGACA"}, "d": {"IGHD1-1*01": "GGTACAACTGGAACGAC", "IGHD1-14*01": "GGTATAACCGGAACCAC", "IGHD1-26*01": "GGTATAGTGGGAGCTACTAC", "IGHD2-15*01": "AGGATATTGTAGTGGTGGTAGCTGCTACTCC", "IGHD2-2*01": "AGGATATTGTAGTAGTACCAGCTGCTATGCC", "IGHD2-21*01": "AGCATATTGTGGTGGTGATTGCTATTCC", "IGHD2-8*01": "AGGATATTGTACTAATGGTGTATGCTATACC", "IGHD2-8*02": "AGGATATTGTACTGGTGGTGTATGCTATACC", "IGHD3-10*03": "GTATTACTATGGTTCAGGGAGTTATTATAAC", "IGHD3-16*03": "GTATTATGATTACATTTGGGGGAGTTATCGTTATACC", "IGHD3-3*01": "GTATTACGATTTTTGGAGTGGTTATTATACC", "IGHD3-9*01": "GTATTACGATATTTTGACTGGTTATTATAAC", "IGHD6-19*01": "GGGTATAGCAGTGGCTGGTAC", "IGHD6-6*01": "GAGTATAGCAGCTCGTCC", "IGHD7-27*01": "CTAACTGGGGA"}, "j": {"IGHJ3*02": 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"7334912e1e-igh", "f3509e0ef3-igh", "b997fa9304-igh"], ["3c5f4c778a-igh"], ["4d37fe487e-igh", "7588f09c07-igh"], ["4f03967793-igh", "c0fcfe005f-igh", "6577576bb8-igh", "6cf028b770-igh", "c2cc9da0c3-igh", "665985d2d1-igh", "d1ee7f9ce6-igh"], ["52387a89c7-igh", "a4b090d0be-igh", "e6fa048856-igh"], ["789d880ef2-igh"], ["7c67587674-igh", "cdae60eacc-igh"], ["a2238f4e9a-igh", "a3baa83300-igh", "b02ee7754a-igh", "b1e56e40a1-igh"], ["b739ce37b7-igh"], ["bb82ebe094-igh"], ["bc11af4843-igh"], ["db63559ea9-igh"]], "ccf_under": 0.9642857142857143, "ccf_over": 0.6158730158730158, "perf_metrics": {}, "n_true_clusters": 10}, {"logprob": -5441.311182569638, "n_clusters": 20, "n_procs": 1, "partition": [["09f5010bd3-igh", "eee6809ad6-igh"], ["0eb272ee70-igh", "9ed10b6475-igh", "8d79fca804-igh", "aa25e6c0ce-igh", "a2238f4e9a-igh", "a3baa83300-igh", "b02ee7754a-igh", "b1e56e40a1-igh"], ["14195e4958-igh", "21cea6e4d0-igh", "57537e5f22-igh", "cb8a759f1a-igh", "8b9ef6b10e-igh", "e11acbe3ab-igh", "eee2c7797d-igh"], ["253ca59333-igh", "ddcf0ca433-igh"], ["276733008f-igh"], ["28ce45b82a-igh", "be186138e0-igh"], ["28f6e090f2-igh", "584ba32878-igh", "b9148494e2-igh"], ["3542bd38d8-igh"], ["35fc655801-igh", "7ba384a461-igh", "7d4166ae48-igh", "cfe3b29587-igh"], ["3a07b6f0a9-igh", "f094dfd68a-igh", "453132f3ab-igh", "7334912e1e-igh", "f3509e0ef3-igh", "b997fa9304-igh"], ["3c5f4c778a-igh"], ["4d37fe487e-igh", "7588f09c07-igh"], ["4f03967793-igh", "c0fcfe005f-igh", "6577576bb8-igh", "6cf028b770-igh", "c2cc9da0c3-igh", "665985d2d1-igh", "d1ee7f9ce6-igh"], ["52387a89c7-igh", "a4b090d0be-igh", "e6fa048856-igh"], ["789d880ef2-igh"], ["7c67587674-igh", "cdae60eacc-igh"], ["b739ce37b7-igh"], ["bb82ebe094-igh"], ["bc11af4843-igh"], ["db63559ea9-igh"]], "ccf_under": 0.9642857142857143, "ccf_over": 0.6634920634920638, "perf_metrics": {}, "n_true_clusters": 10}], "events": [{"has_shm_indels": [false, false, false, false, true, false, true, true], "qr_gap_seqs": ["", "", "", "", "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTTCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAAGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGTGAGCACC.ACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAACTGAGCTCTGTGACTCCCGCAGAAACGGCGGCGTATTACTGTGCGAGAAAGCAAAGCGACACAGTACCCCCCACTGTCCTCGAACGGGACTACTGGGGCCAGGGAACCCTGGTTACCGTCTCCTCAG", "", "CAGCTGCAGCAGCAGGAGTCGGGCCCAAGGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGACTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGCTCGCGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG", "CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGACCCCAGGTAAGGGGCTGGAGTGGATTGGGACTATCTATTACATTACTGGGAGCACCTACTACGACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCACCTACTTCCATCGCTCGAGACTTCTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG"], "gl_gap_seqs": ["", "", "", "", "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGAAAGCAGTGTATAGCAGTGGCTGGTACTTGGATAGCACCGGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "CAGCTGCAGCTGCAGGAGTCGGGCCCA..GGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGGTCGAGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTA...TAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGCGAGCTTTGTATAGCAGTGGCTGGTACTTCGATCGCTCGGGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "indel_reversed_seqs": ["", "", "", "", "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTTCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAAGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGTGAGCACCTACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAACTGAGCTCTGTGACTCCCGCAGAAACGGCGGCGTATTACTGTGCGAGAAAGCAAAGCGACACAGTACCCCCCACTGTCCTCGAACGGGACTACTGGGGCCAGGGAACCCTGGTTACCGTCTCCTCAG", "", "CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGACTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGCTCGCGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG", "CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGACCCCAGGTAAGGGGCTGGAGTGGATTGGGACTATCTATTATACTGGGAGCACCTACTACGACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCACCTACTTCCATCGCTCGAGACTTCTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG"], "unique_ids": ["0eb272ee70-igh", "9ed10b6475-igh", "8d79fca804-igh", "aa25e6c0ce-igh", "a2238f4e9a-igh", "a3baa83300-igh", "b02ee7754a-igh", "b1e56e40a1-igh"], "invalid": false, "v_gene": "IGHV4-39*01", "d_gene": "IGHD6-19*01", "j_gene": "IGHJ4*02", "cdr3_length": 57, "mut_freqs": [0.0797872340425532, 0.07712765957446809, 0.06648936170212766, 0.06382978723404255, 0.10372340425531915, 0.07446808510638298, 0.06914893617021277, 0.0797872340425532], "n_mutations": [30, 29, 25, 24, 39, 28, 26, 30], "input_seqs": ["CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGAAGTAGTAGTTCCTACTGGGGCCGGATCCGCCAGCCCCCAGGTAAGGGGGTGGAGTGGATTGGGAGTATCTATGATAGTGGTAGCACCTACTATAACCAGTCCCTCAAGAGTCGAGTCACCATATCTGTAGACGCGTCCAAGAAGCAGTTCTCCCTGAAGCTGAGCTCTGTGCCCGCCGCAGACACGGCTGCGTATTACTGTGCGAGAGAGTTGTGTATAGCAGTGCTTCTTGCTTGGATAGCCCCGGACTACTGGGGCTAGGGAACCCTGGTCACCGTCTCCTCTG", "CAGCTGCAGCTGCAGGAGTCGAGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTCCCTCACCTGCACTGTCTGTGGTGGCTCCATCAGCAGTAGTAGTTACGACTGGGGCTTGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGCTTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCCCTCAAGAGTCGATTCACCATATCCGTAGAGCCGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCCGACACGGCTGCGTATTACTGTCCGAGTTAGCTTTGAATAGCAGTCCCTCGTACTTCGATATCACCGGACTACTGGGACAAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGGTCGAGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG", "CAGCTGCAGCTGCAGGAGTCGAGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACGACTGGGGCTTGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGCTTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCCCTCAAGAGTCGATTCACCATATCCGTAGACCCGTCCAAGAACCAGTTCTCCCTGAAGCTGCGCTCTGTGACCGCCGCAGACACGGCTGCGTATTACTGTGCGAGCAAACATTGAATAGCAGTATCTAGTACTTCGATAGCACCGGACTACTGGGACAAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTTCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAAGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGTGAGCACCACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAACTGAGCTCTGTGACTCCCGCAGAAACGGCGGCGTATTACTGTGCGAGAAAGCAAAGCGACACAGTACCCCCCACTGTCCTCGAACGGGACTACTGGGGCCAGGGAACCCTGGTTACCGTCTCCTCAG", "CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTAAAGTGGGAGCACCTACTACAACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCTAGCAATGTAAAACAGTACCTCCTACGTCCATCGGTCGAGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG", "CAGCTGCAGCAGCAGGAGTCGGGCCCAAGGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGACTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGCTCGCGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG", "CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGACCCCAGGTAAGGGGCTGGAGTGGATTGGGACTATCTATTACATTACTGGGAGCACCTACTACGACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCACCTACTTCCATCGCTCGAGACTTCTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG"], "naive_seq": "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGCGAGCAGTGTATAGCAGTGGCTGGTACTTCGATCGCTCGGGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], [], [], []], "leader_seqs": ["", "", "", "", "", "", "", ""], "c_gene_seqs": ["", "", "", "", "", "", "", ""], "v_per_gene_support": {"IGHV4-39*01": 1.0}, "d_per_gene_support": {"IGHD6-19*01": 0.9999999999997158, "IGHD6-6*01": 2.78873533723085e-13, "IGHD1-1*01": 6.887082033900205e-16, "IGHD1-14*01": 1.9688322114139713e-17, "IGHD2-15*01": 7.89964383194357e-18, "IGHD2-2*01": 6.819899078640132e-18, "IGHD1-26*01": 1.0120198030072181e-23, "IGHD3-9*01": 5.625874062179769e-25}, "j_per_gene_support": {"IGHJ4*02": 0.9999447398907614, "IGHJ5*02": 5.526010923989229e-05}, "v_3p_del": 3, "d_5p_del": 2, "d_3p_del": 0, "j_5p_del": 8, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CGAGCAGT", "dj_insertion": "TTCGATCGCTCGG", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true, true, true], "stops": [true, true, false, true, false, true, false, false], "paired-uids": [["0eb272ee70-igl"], ["7d4166ae48-igh"], ["8d79fca804-igl"], ["aa25e6c0ce-igl"], ["a2238f4e9a-igl"], ["a3baa83300-igl"], ["b02ee7754a-igl"], ["b1e56e40a1-igl"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 288, "j": 342}}, {"has_shm_indels": [true, true, false, true, false, false, false], "qr_gap_seqs": ["NNNTTGGTGCAGCTGGTGGAGTCTGGGAGTGTATGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGGCTCTCATGGGCAGCCTCTGGATTCACCTTTACTAGCTATTTGATGAGCTGGGTTGGCCAGGCTCCAGGGAAGGGGCTGGAGTGCGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACTACTCTCCAGAGACAACGCCAAGAACTCACTGTATGTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGGTCCATCCCCTGGTGGTCCTGTGTGGGGTGACTACTGGGGCCAGGGAATCCTGGTCACCGTCTCCTCAG", "NNNTAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGGTCCAGCCTGGGGGTTCCCTGAGACTCTCCTGTGCAACCTCTGGATTCACCTTTAGTAGCTATT.GATGAGCAGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAATGGTTGGCCAACATAAAGTAAGATGGAAGTGAGAAATACTATCTGGACTCTGTGAAGGGCCGACTTACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAGCAGCCTGAGAGCCGAGGTCACGGCTGTGTATTACTGTGCGAGAGAGAATTCCGCTAGTGGACCTGTTATCGGTGACTCCTGGGGCCAGGGATTCCTGGTCTCCGTCTCCTCAG", "", "NNNGAGGTGCAACTGGTGGCGTCTGGGGGAGGCTTGGACCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGCATTCACCTTTAGTTGCTATCGAATTCGCTGGGTCCGCCAGACTCAAGGGAAGGGGCT........TGGCTAACATAAAGCAAGATGCAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGTAAATGAACAGCCTGAGAGCCGAGGGCACGGCTGTGTCTTACTGTGCGCGAGTACATTGCCCGAGTGCACGCGTCCGCGGTGACTACTGGGGCCTGCGAACCCTGGTCACCGTCTCCTCAG", "", "", ""], "gl_gap_seqs": ["NNNGAGGTGCAGCTGGTGGAGTCTGG........GGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCA.TCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGGTCCTTCCCCGAGTGGTCGCGTGCGGGGTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "NNNGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGCGTTCCGCTAGTGGACCTGATAGCGGTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "NNNGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGGTCCTTCCCCGAGTGGTCGCGTGCGGGGTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", ""], "indel_reversed_seqs": ["NNNTTGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGGCTCTCATGGGCAGCCTCTGGATTCACCTTTACTAGCTATTTGATGAGCTGGGTTGGCCAGGCTCCAGGGAAGGGGCTGGAGTGCGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACTATCTCCAGAGACAACGCCAAGAACTCACTGTATGTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGGTCCATCCCCTGGTGGTCCTGTGTGGGGTGACTACTGGGGCCAGGGAATCCTGGTCACCGTCTCCTCAG", "NNNTAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGGTCCAGCCTGGGGGTTCCCTGAGACTCTCCTGTGCAACCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCAGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAATGGTTGGCCAACATAAAGTAAGATGGAAGTGAGAAATACTATCTGGACTCTGTGAAGGGCCGACTTACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAGCAGCCTGAGAGCCGAGGTCACGGCTGTGTATTACTGTGCGAGAGAGAATTCCGCTAGTGGACCTGTTATCGGTGACTCCTGGGGCCAGGGATTCCTGGTCTCCGTCTCCTCAG", "", "NNNGAGGTGCAACTGGTGGCGTCTGGGGGAGGCTTGGACCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGCATTCACCTTTAGTTGCTATCGAATTCGCTGGGTCCGCCAGACTCAAGGGAAGGGGCTGGAGTGGGTGGCTAACATAAAGCAAGATGCAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGTAAATGAACAGCCTGAGAGCCGAGGGCACGGCTGTGTCTTACTGTGCGCGAGTACATTGCCCGAGTGCACGCGTCCGCGGTGACTACTGGGGCCTGCGAACCCTGGTCACCGTCTCCTCAG", "", "", ""], "unique_ids": ["14195e4958-igh", "21cea6e4d0-igh", "57537e5f22-igh", "cb8a759f1a-igh", "8b9ef6b10e-igh", "e11acbe3ab-igh", "eee2c7797d-igh"], "invalid": false, "v_gene": "IGHV3-7*01", "d_gene": "IGHD3-3*01", "j_gene": "IGHJ4*02", "cdr3_length": 48, "mut_freqs": [0.057692307692307696, 0.07417582417582418, 0.09615384615384616, 0.08516483516483517, 0.07417582417582418, 0.03571428571428571, 0.06043956043956044], "n_mutations": [21, 27, 35, 31, 27, 13, 22], "input_seqs": ["NNNTTGGTGCAGCTGGTGGAGTCTGGGAGTGTATGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGGCTCTCATGGGCAGCCTCTGGATTCACCTTTACTAGCTATTTGATGAGCTGGGTTGGCCAGGCTCCAGGGAAGGGGCTGGAGTGCGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACTACTCTCCAGAGACAACGCCAAGAACTCACTGTATGTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGGTCCATCCCCTGGTGGTCCTGTGTGGGGTGACTACTGGGGCCAGGGAATCCTGGTCACCGTCTCCTCAG", "NNNTAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGGTCCAGCCTGGGGGTTCCCTGAGACTCTCCTGTGCAACCTCTGGATTCACCTTTAGTAGCTATTGATGAGCAGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAATGGTTGGCCAACATAAAGTAAGATGGAAGTGAGAAATACTATCTGGACTCTGTGAAGGGCCGACTTACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAGCAGCCTGAGAGCCGAGGTCACGGCTGTGTATTACTGTGCGAGAGAGAATTCCGCTAGTGGACCTGTTATCGGTGACTCCTGGGGCCAGGGATTCCTGGTCTCCGTCTCCTCAG", "NNNTAGGTGCAGCTTGTGGAGTCTGGAGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCATGTGCAGCCTCTCGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGGTCCAGGGAAGGGGCTGGAGTGGGTGGCCGAGATAAAGCAAGATGGTAGTCAGAAATACTATCTGGACTCACTGAAGGGCCGATTCACCAACTCCAGAGACAACGCCAAGACCTCACTGTATCTGCAAATGAGCAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGGGGGTCCCGCCATTGCAACTGACACCGGTGACTACTGGGGCCAGGCAATCCTGGGCACCGTCTCCTCAG", "NNNGAGGTGCAACTGGTGGCGTCTGGGGGAGGCTTGGACCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGCATTCACCTTTAGTTGCTATCGAATTCGCTGGGTCCGCCAGACTCAAGGGAAGGGGCTTGGCTAACATAAAGCAAGATGCAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGTAAATGAACAGCCTGAGAGCCGAGGGCACGGCTGTGTCTTACTGTGCGCGAGTACATTGCCCGAGTGCACGCGTCCGCGGTGACTACTGGGGCCTGCGAACCCTGGTCACCGTCTCCTCAG", "NNNTAGCTGCAGCTGGCGGAGTCTGGGGGAGGCTTGGTCGAGTCTGGGGGGTCCATGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGTTTTTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATTAAGCAAGATGGAAGTGAGAAATTCTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTAACTGTATCTGCAAATGAACACCCTGAAAGCCGAGGACACGGCTGTGTATTATTGTGCGAGAGAGCGTTCAGCTCGGGGACATGAGCGGGCTGACTAGTGGGGCCAGGGAATCCTTGTCACCGTCTCCACAG", "NNNTAGGTGCAGCCGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTACTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGTGGCTGGAGTGTGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCAGCTCCAGAGACAACACCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACCCGGCTGTGTATTACTGTGCGAGAGACCAATCTGCTAGTGGTCTTGGGCGGGGTGACTACTGGGGCCAGGGAAGCCTGGTCACCGTCTCCTCAG", "NNNTAGGTGCAGCGGGTGGAGTATGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGAGCAGCCTCTGGATTCACCTTTACTAGCTATTGGATGAGCTGGGTCGGCCAGGCTCCAGGGAAGGGGCTGGAGTGTGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGCACTCTGTGAAGGGCCGACTCACCAGCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAATTGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGCAACCGGCTAGTGGTGTTTGGCGGGCTGAATACTGGGGCCAGGGAAGCCTGGTCACCGTCTCCTCAG"], "naive_seq": "NNNGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGACCCTTCCGCTAGTGGTCGTGGGCGGGGTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], [], []], "leader_seqs": ["", "", "", "", "", "", ""], "c_gene_seqs": ["", "", "", "", "", "", ""], "v_per_gene_support": {"IGHV3-7*01": 1.0}, "d_per_gene_support": {"IGHD3-3*01": 0.8695026798330409, "IGHD6-6*01": 0.0659765526369308, "IGHD2-8*02": 0.017983279613469058, "IGHD1-1*01": 0.01619171053372948, "IGHD2-21*01": 0.014403243378359685, "IGHD2-15*01": 0.008556578615715186, "IGHD7-27*01": 0.004573553234543954, "IGHD3-16*03": 0.0027219387872620755, "IGHD2-8*01": 5.467079719850314e-05, "IGHD3-10*03": 2.7119735086047556e-05, "IGHD1-26*01": 8.672834721155417e-06}, "j_per_gene_support": {"IGHJ4*02": 0.9999516067585879, "IGHJ5*02": 4.839324140366908e-05}, "v_3p_del": 0, "d_5p_del": 16, "d_3p_del": 9, "j_5p_del": 7, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CCCTTCCGCT", "dj_insertion": "CGTGGGCGGGG", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true, true], "stops": [false, true, true, true, true, true, true], "paired-uids": [["14195e4958-igl", "d5ddf0c2ec-igl"], ["21cea6e4d0-igl", "f094dfd68a-igh", "f094dfd68a-igk"], ["57537e5f22-igl", "7ba384a461-igh", "7ba384a461-igk"], ["7588f09c07-igh", "7588f09c07-igl"], ["51c4c0cd70-igk"], ["db63559ea9-igh", "db63559ea9-igk"], ["52387a89c7-igh", "52387a89c7-igk"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 288, "j": 333}}, {"has_shm_indels": [false, false, true, false, false, false, false], "qr_gap_seqs": ["", "", "NNNCAGGTGTAGCTGATGGTGTCTGGGGGAGGCGTGGTCCAGCCTAGGAGGTCCCTGAGACTGACTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGCCATGCACTGGGTCCGCCAGGCACCCGCCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTATTATATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACCCGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGAGGCGATTTGTGGAATGGTATTTTCGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", "", ""], "gl_gap_seqs": ["", "", "NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACT..CTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGGCTGGAGGCGATTTTTGGAGTGGTTATTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", "", ""], "indel_reversed_seqs": ["", "", "NNNCAGGTGTAGCTGATGGTGTCTGGGGGAGGCGTGGTCCAGCCTAGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGCCATGCACTGGGTCCGCCAGGCACCCGCCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTATTATATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACCCGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGAGGCGATTTGTGGAATGGTATTTTCGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", "", ""], "unique_ids": ["4f03967793-igh", "c0fcfe005f-igh", "6577576bb8-igh", "6cf028b770-igh", "c2cc9da0c3-igh", "665985d2d1-igh", "d1ee7f9ce6-igh"], "invalid": false, "v_gene": "IGHV3-33*01", "d_gene": "IGHD3-3*01", "j_gene": "IGHJ5*02", "cdr3_length": 66, "mut_freqs": [0.06282722513089005, 0.034031413612565446, 0.05235602094240838, 0.06282722513089005, 0.060209424083769635, 0.034031413612565446, 0.028795811518324606], "n_mutations": [24, 13, 20, 24, 23, 13, 11], "input_seqs": ["NNNCAGGTGCAGCTGATGGTGTCTGGGGGAGGCGGGGTCCAGCCGAGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCGGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCACCCGCCAAGGGGCTGGAGTGGGTGGCAATTATATGGTATGATGGAAGTAACAAATACTATGCAGACTCCGTGAAGGGCTGATTCACCATCTCCAGAGACAATTCCAAGAACCCGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGGTGGAGGGGATCTCTGGACTGGTCTTTATGGGAACAACTGGTTCGACCCCTGGGGACAGGGAACCCTGGTCACCGTCTCCTCAG", "NNNCAGGTGCAGCTGGCGGAGTCTGGGGGAGGCGTGGTCCACCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCATCTGGATTCACCGTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTGCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCCGGGTGAGATTTTGGGTTTGGTTACTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "NNNCAGGTGTAGCTGATGGTGTCTGGGGGAGGCGTGGTCCAGCCTAGGAGGTCCCTGAGACTGACTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGCCATGCACTGGGTCCGCCAGGCACCCGCCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTATTATATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACCCGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGAGGCGATTTGTGGAATGGTATTTTCGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "NNNCAGGCGCAGCGGATGGAGTCTGGGGGAGGCGTGGTCCAGCCTAGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCAGGATTCACCTTCAGTAGCTATGGCATGCACCGGGTCCGCCAGGCACCCGCCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATCTTGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACCCGCTGTATCTGCAAATGACAAGCCTGAGAGCCGAGGACACGGATGTGAATTACTGTGCGAGAGATACTGGCGGCGATTTTTCGAATGGCCTTTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "NNNCAGGTGCAGCTGGTGGGGTCTGGGGGAGGCGTGGTCCAGCCTGGTAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTGACCTTATGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGAGTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAATTGAACAGCTTGAGAGCCGAGGAGACGGCTGTGAATTACTGTCCGAGAGAGGGTGGATTCGAATTATGGATTTGATAGTATGGTACCAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAT", "NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCACCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCATCTGGATTCACCGTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGGTTAGATTTTGGGTTTGGTTAGTGTGCGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCACCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCATCTGGATTCACCGTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGGTGAGATTTTGGGTTTGCTTACTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "naive_seq": "NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGGCTGGCTGCGATTTTTGGAGTGGTTATTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], [], []], "leader_seqs": ["", "", "", "", "", "", ""], "c_gene_seqs": ["", "", "", "", "", "", ""], "v_per_gene_support": {"IGHV3-33*01": 1.0}, "d_per_gene_support": {"IGHD3-3*01": 0.9999999999993463, "IGHD3-16*03": 5.017788049062486e-13, "IGHD6-19*01": 1.3569563433921646e-13, "IGHD2-2*01": 1.7395288521187652e-14, "IGHD2-8*02": 5.665722335984446e-15, "IGHD3-9*01": 1.5998764298348687e-15, "IGHD2-21*01": 1.26022892996746e-15, "IGHD3-10*03": 3.949063601524849e-16}, "j_per_gene_support": {"IGHJ5*02": 1.0}, "v_3p_del": 0, "d_5p_del": 6, "d_3p_del": 3, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "GGCTGGCTG", "dj_insertion": "GGGA", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true, true], "stops": [true, true, true, false, true, true, true], "paired-uids": [["4f03967793-igk"], ["971ac047ee-igl", "c0fcfe005f-igk"], ["6577576bb8-igk"], ["6cf028b770-igk"], ["c2cc9da0c3-igk"], ["665985d2d1-igk"], ["d1ee7f9ce6-igk"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 288, "j": 351}}, {"has_shm_indels": [false, false, false, false, false, false], "qr_gap_seqs": ["", "", "", "", "", ""], "gl_gap_seqs": ["", "", "", "", "", ""], "indel_reversed_seqs": ["", "", "", "", "", ""], "unique_ids": ["3a07b6f0a9-igh", "f094dfd68a-igh", "453132f3ab-igh", "7334912e1e-igh", "f3509e0ef3-igh", "b997fa9304-igh"], "invalid": false, "v_gene": "IGHV3-33*01", "d_gene": "IGHD1-14*01", "j_gene": "IGHJ6*02", "cdr3_length": 54, "mut_freqs": [0.024324324324324326, 0.02972972972972973, 0.03513513513513514, 0.03513513513513514, 0.032432432432432434, 0.02702702702702703], "n_mutations": [9, 11, 13, 13, 12, 10], "input_seqs": ["NNNCAGGTGCAGCTGGTGGAATCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTGCTGTGCAGCGTCTGGATTCACCTTCAGTAGGTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGAGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGTTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGTCACGGCTGTGTATTACTGTGCGAGAGAGCCGGAACCGGAACAAATAGTTGCCTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGGTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGGAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGTCACGGCTGTGGATTACTGTGCGAGAGGGCCGGCACCGGAACCGCTACTTACCTACGGTATGGACGTCTGGGGCCAAGGGACCACGGGCACCGTCTCCTCAG", "NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACCCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGTCATGGACTGGGTCCGCCAGGCACCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAACAGGCAGCGGAACCAGAACTTTCCTACGGTATAGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTAGGAGGTCCCTGAGACTCTCCTTTTCAGCGTCTGGATTCACCTTCAGTAGGTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCATACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGTTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGTCCCGGCTGTGTATTACTGTGCGAGAGAGCCGGAACTGGTAGCACTAGTTCCCTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "NNNCTAGTTCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGAATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATCTGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGGGGACACGGCTGTGTATTACTGTGCGAGAGAGCCGACACAGGAACCACGAGTTTGCTACGATATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "NNNCTGGTTCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGAATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATCTGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGGGGACACGGCTGTGTATTACTGTGCGAGAGAGCCGACACAGGAACCACGAGTTCGCTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG"], "naive_seq": "NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGCCGGAACCGGAACCACGAGTTGCCTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], []], "leader_seqs": ["", "", "", "", "", ""], "c_gene_seqs": ["", "", "", "", "", ""], "v_per_gene_support": {"IGHV3-33*01": 1.0}, "d_per_gene_support": {"IGHD1-14*01": 0.9999890072849624, "IGHD1-1*01": 8.533815500524334e-06, "IGHD6-19*01": 2.4375722517369996e-06, "IGHD2-15*01": 2.0129669961677973e-08, "IGHD1-26*01": 1.1976015449620852e-09}, "j_per_gene_support": {"IGHJ6*02": 1.0}, "v_3p_del": 0, "d_5p_del": 5, "d_3p_del": 0, "j_5p_del": 13, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "GCCGG", "dj_insertion": "GAGTTGC", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true], "stops": [false, false, false, false, false, false], "paired-uids": [["3a07b6f0a9-igk"], ["21cea6e4d0-igh", "21cea6e4d0-igl", "f094dfd68a-igk"], ["453132f3ab-igk"], ["7334912e1e-igk"], ["f3509e0ef3-igk"], []], "loci": ["igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 288, "j": 339}}, {"has_shm_indels": [false, false, false, true], "qr_gap_seqs": ["", "", "", "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCAGTGTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACCCCCAACTGGGGACGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "gl_gap_seqs": ["", "", "", "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATC....TCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACCCCCAACTGGGGACGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "indel_reversed_seqs": ["", "", "", "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACCCCCAACTGGGGACGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "unique_ids": ["35fc655801-igh", "7ba384a461-igh", "7d4166ae48-igh", "cfe3b29587-igh"], "invalid": false, "v_gene": "IGHV2-70*01", "d_gene": "IGHD7-27*01", "j_gene": "IGHJ4*02", "cdr3_length": 39, "mut_freqs": [0.00558659217877095, 0.00558659217877095, 0.0, 0.0], "n_mutations": [2, 2, 0, 0], "input_seqs": ["CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACGCCGAACTGGGGACGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACGCCGAACTGGGGACGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACCCCCAACTGGGGACGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCAGTGTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACCCCCAACTGGGGACGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "naive_seq": "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACCCCCAACTGGGGACGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], []], "leader_seqs": ["", "", "", ""], "c_gene_seqs": ["", "", "", ""], "v_per_gene_support": {"IGHV2-70*01": 1.0}, "d_per_gene_support": {"IGHD7-27*01": 0.9986914265191301, "IGHD1-1*01": 0.0013084010884443359, "IGHD3-9*01": 1.7239242289447176e-07}, "j_per_gene_support": {"IGHJ4*02": 0.9999990472820661, "IGHJ5*02": 9.527179352372375e-07}, "v_3p_del": 0, "d_5p_del": 2, "d_3p_del": 0, "j_5p_del": 6, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CCCC", "dj_insertion": "CG", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false], "in_frames": [true, true, true, true], "stops": [false, false, false, false], "paired-uids": [["35fc655801-igk"], ["57537e5f22-igh", "57537e5f22-igl", "7ba384a461-igk"], ["9ed10b6475-igh"], ["09f5010bd3-igh", "09f5010bd3-igl", "cfe3b29587-igk"]], "loci": ["igh", "igh", "igh", "igh"], "codon_positions": {"v": 288, "j": 324}}, {"has_shm_indels": [false, false, false], "qr_gap_seqs": ["", "", ""], "gl_gap_seqs": ["", "", ""], "indel_reversed_seqs": ["", "", ""], "unique_ids": ["28f6e090f2-igh", "584ba32878-igh", "b9148494e2-igh"], "invalid": false, "v_gene": "IGHV1-2*02", "d_gene": "IGHD6-6*01", "j_gene": "IGHJ3*02", "cdr3_length": 63, "mut_freqs": [0.0, 0.0, 0.0], "n_mutations": [0, 0, 0], "input_seqs": ["NNNCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAACCGGACTGCTCTGTATAGCAGCTCGTCCCGATGGTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG", "NNNCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAACCGGACTGCTCTGTATAGCAGCTCGTCCCGATGGTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG", "NNNCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAACCGGACTGCTCTGTATAGCAGCTCGTCCCGATGGTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG"], "naive_seq": "NNNCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAACCGGACTGCTCTGTATAGCAGCTCGTCCCGATGGTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG", "duplicates": [[], [], []], "leader_seqs": ["", "", ""], "c_gene_seqs": ["", "", ""], "v_per_gene_support": {"IGHV1-2*02": 1.0}, "d_per_gene_support": {"IGHD6-6*01": 0.9999992851640084, "IGHD6-19*01": 7.148231161657961e-07, "IGHD2-15*01": 1.287286234221371e-11}, "j_per_gene_support": {"IGHJ3*02": 1.0}, "v_3p_del": 2, "d_5p_del": 2, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "ACCGGACTGCTCT", "dj_insertion": "CGATGG", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false, false, false], "in_frames": [true, true, true], "stops": [false, false, false], "paired-uids": [["28f6e090f2-igk"], [], ["b9148494e2-igk"]], "loci": ["igh", "igh", "igh"], "codon_positions": {"v": 288, "j": 348}}, {"has_shm_indels": [false, false, false], "qr_gap_seqs": ["", "", ""], "gl_gap_seqs": ["", "", ""], "indel_reversed_seqs": ["", "", ""], "unique_ids": ["52387a89c7-igh", "a4b090d0be-igh", "e6fa048856-igh"], "invalid": false, "v_gene": "IGHV2-70*01", "d_gene": "IGHD2-8*01", "j_gene": "IGHJ4*02", "cdr3_length": 39, "mut_freqs": [0.06983240223463687, 0.061452513966480445, 0.061452513966480445], "n_mutations": [25, 22, 22], "input_seqs": ["CCGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCTCTCAGCACTAGTGGCATGTGTGTGAGCTGGATCCGTCAGCCCGCAGGGCAGGCCCAGGAGGGGCTTGGACTCATTGATTGGGATGTTCATAAATACTACAGCACATCTCTGAGGAACAGGCTTACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATAACCAACATGGACCCTGTGGATACAGTAACGTATTACTGTGGACGGATACCCTCAATTTTGTACCTGGATTTCTGGGCCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CCGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCTCTCAGCACTAGTGGCATGTGTGTGAGCTGGATCCGTCAGCCCGCAGGGCAGGCCCAGGAGGGGCTTGGACTCATTGATTGGGATGATCATAAATACTACAGCACATCTCTGAAGAACAGACTTACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGATACAGTAACGTATTACTGTGGACGGATACCCTCAATCGTGTACTTGGATTTCTGGGCCCAGGGAACCCTGGTAACCGTCTCCTCAG", "CAGGTCATCTCGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGAACTGCACCTTCTCTGGGTTCTCACTCAGCACGAGTGGAATGTGTGTGAGCTTGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTTCACTCATAGATTGGGATGATCATAAATACTACAGCAAATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACGCCCAAAAACCAGGTGGTCCTTACAATGACCAACATGTACCCTGTGGACAAAGCCACGTCTTACTGTGCACGGATACCTACTATGGTGGAATTTGAACACTGGGGCCAGGGAACCCTGGTCAGCGTCTCCTCAG"], "naive_seq": "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACCCTCAATGGTGTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], []], "leader_seqs": ["", "", ""], "c_gene_seqs": ["", "", ""], "v_per_gene_support": {"IGHV2-70*01": 1.0}, "d_per_gene_support": {"IGHD2-8*01": 0.9356524063923333, "IGHD3-3*01": 0.034166001684019884, "IGHD6-6*01": 0.014239702968522384, "IGHD3-16*03": 0.007368587605670948, "IGHD2-2*01": 0.003294528449587999, "IGHD3-10*03": 0.0026847082069778507, "IGHD2-15*01": 0.0025779616971268104, "IGHD3-9*01": 1.6102995744951492e-05}, "j_per_gene_support": {"IGHJ4*02": 0.9999996325455065, "IGHJ5*02": 3.6745448825167223e-07}, "v_3p_del": 0, "d_5p_del": 13, "d_3p_del": 11, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CCTC", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false], "in_frames": [true, true, true], "stops": [false, false, false], "paired-uids": [["52387a89c7-igk", "eee2c7797d-igh"], ["8807c8ff04-igl", "a4b090d0be-igk"], ["e6fa048856-igk"]], "loci": ["igh", "igh", "igh"], "codon_positions": {"v": 288, "j": 324}}, {"has_shm_indels": [true, false], "qr_gap_seqs": ["NNNCAGGTCCAGCTGCTGCAGCCTGGGGCTGAGCTGAAGAAGC............TGCAGGTCTCCTGCAAGGCTTCTGGAGGCACGTTCAGCAGCTTTGCTATCAACTGGGTGAGACAGGCCCCTGGACAAGGGCTTAGGGAGGTCAGGTAGGAGTGGATGGGAAGGATCATCCCTATCCGTGGTATAGCAAACTTCGCACAGAAGTTTCAGGGTGGAGTCACGATTCCCGCGGAAAAATCCACGATGCCAGCCTACATGGAGGTAAGCAGCCTTAGATCCGAGGACACGCTCGTGTATTACTGTGAGAGCCACCACGAGTTATGTCATAAAAATTACTTTGACTATTGGGGCCAGGGAACCCTGGTCACCGTTTGCTCAG", ""], "gl_gap_seqs": ["NNNCAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTT...............GAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGCCGCCACGCGTTATACCATAAAACTTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", ""], "indel_reversed_seqs": ["NNNCAGGTCCAGCTGCTGCAGCCTGGGGCTGAGCTGAAGAAGCCTGGGTCCTCGGTGCAGGTCTCCTGCAAGGCTTCTGGAGGCACGTTCAGCAGCTTTGCTATCAACTGGGTGAGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCGTGGTATAGCAAACTTCGCACAGAAGTTTCAGGGTGGAGTCACGATTCCCGCGGAAAAATCCACGATGCCAGCCTACATGGAGGTAAGCAGCCTTAGATCCGAGGACACGCTCGTGTATTACTGTGAGAGCCACCACGAGTTATGTCATAAAAATTACTTTGACTATTGGGGCCAGGGAACCCTGGTCACCGTTTGCTCAG", ""], "unique_ids": ["09f5010bd3-igh", "eee6809ad6-igh"], "invalid": false, "v_gene": "IGHV1-69*04", "d_gene": "IGHD3-16*03", "j_gene": "IGHJ4*02", "cdr3_length": 48, "mut_freqs": [0.09065934065934066, 0.09065934065934066], "n_mutations": [33, 33], "input_seqs": ["NNNCAGGTCCAGCTGCTGCAGCCTGGGGCTGAGCTGAAGAAGCTGCAGGTCTCCTGCAAGGCTTCTGGAGGCACGTTCAGCAGCTTTGCTATCAACTGGGTGAGACAGGCCCCTGGACAAGGGCTTAGGGAGGTCAGGTAGGAGTGGATGGGAAGGATCATCCCTATCCGTGGTATAGCAAACTTCGCACAGAAGTTTCAGGGTGGAGTCACGATTCCCGCGGAAAAATCCACGATGCCAGCCTACATGGAGGTAAGCAGCCTTAGATCCGAGGACACGCTCGTGTATTACTGTGAGAGCCACCACGAGTTATGTCATAAAAATTACTTTGACTATTGGGGCCAGGGAACCCTGGTCACCGTTTGCTCAG", "NNNCAGGTCGAGCTGCTGCAGCCTGGGGCTGAGCTGAAGAAGCCTGGGGCCTCGCTGCAGGTCTCCTGCAAGGCTTCTGGAGGCACGTTCAGCAGCTTTGCTATCAACTGGGTGAGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCTGTGGTATAGCAAACTTCGCACAGAAGTTTCAGGGTTGAGTCACGATTCCCGCGGAAAAATCCACGATGCCAGCCTACATGGAGCTAAGCAGCCTGAGATCCGAGGACACGGTCGTGTATAACTGTGAGAGCCGCAACACGTTATATCATAAAACTAACTTTGACTATTGGGGCCAGGGAACCCTGGTCACCGTTTCCTCAG"], "naive_seq": "NNNCAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGCCGCCACGCGTTATACCATAAAACTTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], []], "leader_seqs": ["", ""], "c_gene_seqs": ["", ""], "v_per_gene_support": {"IGHV1-69*04": 1.0}, "d_per_gene_support": {"IGHD3-16*03": 0.8729835847356453, "IGHD3-3*01": 0.11594219551514155, "IGHD3-10*03": 0.010084773906673223, "IGHD3-9*01": 0.0009894458425070308}, "j_per_gene_support": {"IGHJ4*02": 0.9999999999926672, "IGHJ5*02": 7.306826995028274e-12}, "v_3p_del": 3, "d_5p_del": 28, "d_3p_del": 0, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CCGCCACG", "dj_insertion": "ATAAAACT", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [true, true], "paired-uids": [["09f5010bd3-igl", "cfe3b29587-igh", "cfe3b29587-igk"], ["bc11af4843-igh", "bc11af4843-igk", "eee6809ad6-igl"]], "loci": ["igh", "igh"], "codon_positions": {"v": 288, "j": 333}}, {"has_shm_indels": [false, false], "qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "unique_ids": ["253ca59333-igh", "ddcf0ca433-igh"], "invalid": false, "v_gene": "IGHV4-39*01", "d_gene": "IGHD6-19*01", "j_gene": "IGHJ4*02", "cdr3_length": 57, "mut_freqs": [0.05053191489361702, 0.047872340425531915], "n_mutations": [19, 18], "input_seqs": ["CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTCCCTCACCTGCACTGTCTCTGTTGGCTCCATCAGCAGAAGTAGTTACTACTGCGGCCCGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGATTCGGAGTATCTATTATAGTGGGAGCACCTACTACATCCAGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGCGTATTACTGTGCGAGCCAACCATGCATATCAGTACCTCCTACTAAACTCTCGCAAGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTCCCTCACCTGCACTGTCTCTGTTGGCTCCATCAGCAGAAGTAGTTACTACTGCGGCCCGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGATTCGGAGTATCTATTATAGTGGGAGCACCTACTACATCCAGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGCGTATTACTGTGCGAGCCAGCCTTGCATATCAGTACCTCCTACAAAACTCTCGCAAGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "naive_seq": "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGCCAGCCTTGCATAGCAGTGGCTGGTACTAAACTCTCGCAAGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], []], "leader_seqs": ["", ""], "c_gene_seqs": ["", ""], "v_per_gene_support": {"IGHV4-39*01": 1.0}, "d_per_gene_support": {"IGHD6-19*01": 0.985988534691648, "IGHD2-2*01": 0.013036742622861367, "IGHD2-15*01": 0.0009747226855021757}, "j_per_gene_support": {"IGHJ4*02": 0.9999998272976292, "IGHJ5*02": 1.7270236239524066e-07}, "v_3p_del": 3, "d_5p_del": 4, "d_3p_del": 0, "j_5p_del": 8, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CCAGCCTTGC", "dj_insertion": "TAAACTCTCGCAA", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [false, false], "paired-uids": [["253ca59333-igl", "b739ce37b7-igh", "b739ce37b7-igl"], ["ddcf0ca433-igl"]], "loci": ["igh", "igh"], "codon_positions": {"v": 288, "j": 342}}, {"has_shm_indels": [false, false], "qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "unique_ids": ["28ce45b82a-igh", "be186138e0-igh"], "invalid": false, "v_gene": "IGHV1-69*04", "d_gene": "IGHD1-26*01", "j_gene": "IGHJ4*02", "cdr3_length": 48, "mut_freqs": [0.0, 0.0], "n_mutations": [0, 0], "input_seqs": ["NNNCAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGCGTATAGTGGGAGCTACTACTTACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "NNNCAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGCGTATAGTGGGAGCTACTACTTACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "naive_seq": "NNNCAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGCGTATAGTGGGAGCTACTACTTACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], []], "leader_seqs": ["", ""], "c_gene_seqs": ["", ""], "v_per_gene_support": {"IGHV1-69*04": 1.0}, "d_per_gene_support": {"IGHD1-26*01": 0.9999999999994387, "IGHD2-15*01": 5.621796129949252e-13}, "j_per_gene_support": {"IGHJ4*02": 0.9999999998758256, "IGHJ5*02": 1.2417242399287063e-10}, "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "GC", "dj_insertion": "TT", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [false, false], "paired-uids": [["28ce45b82a-igk"], ["be186138e0-igk"]], "loci": ["igh", "igh"], "codon_positions": {"v": 288, "j": 333}}, {"has_shm_indels": [false, false], "qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "unique_ids": ["4d37fe487e-igh", "7588f09c07-igh"], "invalid": false, "v_gene": "IGHV4-39*01", "d_gene": "IGHD6-19*01", "j_gene": "IGHJ4*02", "cdr3_length": 57, "mut_freqs": [0.07712765957446809, 0.05319148936170213], "n_mutations": [29, 20], "input_seqs": ["CAGCTGCAGCTGCAGGAGTCGAACCCAGGACTGGTGATGCCTTCGGAGACCTTGTCCCTCACCTGCACTGTCTATGGTGGCTCCATCACCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGCTTGGGAGTATCTCTTATAGTGGGAGCACATACTACAACCAGTCACTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCATGAACCAGTTCTCCCTGAAGCTGAGCTCTGTCACCGCCGCAGACACGGCTGCGTCTTACTGTGCGAGCCTGCCTAGAAGAGAAGTACCTCTTTATAAGATAGCTCAAGACTACTGGGACCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGCTGCAGCTGCAGGAGTCGAGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGCTTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCAGTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGATGAGCTCTGTGACCGCCGCAGACACGGCTGCGTATTACTGTGCGAGCCCTCCTTGGATAGCAGGGCTTCGTTCAAAGATAGCACTAGACTACTGGGACCAGGGAACCCTGGTCACCGTCTCCTCAG"], "naive_seq": "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGCCCGCCTTGTATAGCAGTGGCTGGTACTAAGATAGCTCTAGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], []], "leader_seqs": ["", ""], "c_gene_seqs": ["", ""], "v_per_gene_support": {"IGHV4-39*01": 1.0}, "d_per_gene_support": {"IGHD6-19*01": 0.9979249225392985, "IGHD3-16*03": 0.0011280562801319067, "IGHD6-6*01": 0.0008840170276921409, "IGHD2-2*01": 6.300369179198006e-05, "IGHD3-10*03": 4.610787637441733e-10}, "j_per_gene_support": {"IGHJ4*02": 0.99999985609379, "IGHJ5*02": 1.439061992227603e-07}, "v_3p_del": 3, "d_5p_del": 2, "d_3p_del": 0, "j_5p_del": 8, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CCCGCCTT", "dj_insertion": "TAAGATAGCTCTA", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [false, false], "paired-uids": [["4d37fe487e-igl"], ["7588f09c07-igl", "cb8a759f1a-igh"]], "loci": ["igh", "igh"], "codon_positions": {"v": 288, "j": 342}}, {"has_shm_indels": [false, false], "qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "unique_ids": ["7c67587674-igh", "cdae60eacc-igh"], "invalid": false, "v_gene": "IGHV3-33*01", "d_gene": "IGHD3-3*01", "j_gene": "IGHJ5*02", "cdr3_length": 66, "mut_freqs": [0.028795811518324606, 0.028795811518324606], "n_mutations": [11, 11], "input_seqs": ["NNNCGGGTGCAGCTGATGGAGTCTGGGGGAGGCGTGGTACAGCCTGGGAGGTCCCTGAGACTCTCCTATGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCGGCCAGGCTCCCGCCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATGCGCCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGATGCGTTTTTTGGAATGGTCCGTCAAGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "NNNCGGGTGCAGCTGATGGAGTCTGGGGGAGGCGTGGTACAGCCTGGGAGGTCCCTGAGACTCTCCTATGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCGGCCAGGCTCCCGCCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATGCGCCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGATGCGTTTTTTGGAATGGTCCGTCAAGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "naive_seq": "NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGGCTGGATGCGTTTTTTGGAGTGGTCCGTCAAGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], []], "leader_seqs": ["", ""], "c_gene_seqs": ["", ""], "v_per_gene_support": {"IGHV3-33*01": 1.0}, "d_per_gene_support": {"IGHD3-3*01": 0.9997233702555388, "IGHD6-19*01": 0.00023668470338536438, "IGHD2-8*01": 2.8778508903414673e-05, "IGHD3-9*01": 7.92088458766158e-06, "IGHD2-15*01": 3.245647571239807e-06}, "j_per_gene_support": {"IGHJ5*02": 1.0}, "v_3p_del": 0, "d_5p_del": 9, "d_3p_del": 9, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "GGCTGGATGCGT", "dj_insertion": "CCGTCAAGGA", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [false, false], "paired-uids": [["7c67587674-igk"], ["cdae60eacc-igk"]], "loci": ["igh", "igh"], "codon_positions": {"v": 288, "j": 351}}, {"has_shm_indels": [false], "qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["276733008f-igh"], "invalid": false, "v_gene": "IGHV2-70*01", "d_gene": "IGHD2-8*01", "j_gene": "IGHJ4*02", "cdr3_length": 39, "mut_freqs": [0.05865921787709497], "n_mutations": [21], "input_seqs": ["CAGGTCACCTTGAGGGCGTCTGGTCCTGCGCTGCTGAAACCCACAAAGACCCTCACACTTACCTGCACCTTCTCTGGGTTCCCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGCGATGATCATAAATATTATACCACATCTCTTAAGACCCGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCCTACATTGACCAACATGGACCCTGTGAACACAGCCACGTATTACTGTGCACGGATACTCTCTACTATTGGTTTTGTTTACTGGGGCCAGGGTACCCTGGTCACCCTCTCCTCAG"], "naive_seq": "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACTCTGTACTAATGGTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGHV2-70*01": 1.0}, "d_per_gene_support": {"IGHD2-8*01": 0.9683865600067959, "IGHD1-26*01": 0.0316134399931988}, "j_per_gene_support": {"IGHJ4*02": 1.0}, "v_3p_del": 0, "d_5p_del": 7, "d_3p_del": 12, "j_5p_del": 5, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "TC", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "paired-uids": [["276733008f-igk"]], "loci": ["igh"], "codon_positions": {"v": 288, "j": 324}}, {"has_shm_indels": [false], "qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["3542bd38d8-igh"], "invalid": false, "v_gene": "IGHV2-70*01", "d_gene": "IGHD3-3*01", "j_gene": "IGHJ4*02", "cdr3_length": 39, "mut_freqs": [0.08100558659217877], "n_mutations": [29], "input_seqs": ["CCGGTCACCTTGAGGGAGTCTGGTCCCGCGCTGGTTAAACCCACACAGACCCTCACACTGACCTGCAACTTCTCTGGGCTCTCACTCAGCACTAGTGTAATGCGTGTGAGCTGGATCCGTCAGCCCCCAAGGAAGGCCCTGGAGTGGGATGCACTCATTGTTTGGGATGATCATATATACTACAGCACATCTCTGAAGACCAGGCTCACTATCTCCAAGGACACCTCCACAAACCCGGTGGTCCTTACAATGACCAACATGGTCCCTGTGGATACAGCCACGTATTACTGTGCACTGATACTCGCGAATTTGGATTTAGATTACTGGGGCCACGGAACTCTGTTCACCGTCTCCTCAA"], "naive_seq": "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACTCGCGATTTTTGGAGTAGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGHV2-70*01": 1.0}, "d_per_gene_support": {"IGHD3-3*01": 0.9910985455918346, "IGHD3-16*03": 0.008551545013378816, "IGHD3-9*01": 0.00034990939478417516}, "j_per_gene_support": {"IGHJ4*02": 0.9994642028610878, "IGHJ5*02": 0.0005357971389022287}, "v_3p_del": 0, "d_5p_del": 6, "d_3p_del": 12, "j_5p_del": 8, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "TCG", "dj_insertion": "A", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "paired-uids": [["3542bd38d8-igk"]], "loci": ["igh"], "codon_positions": {"v": 288, "j": 324}}, {"has_shm_indels": [false], "qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["3c5f4c778a-igh"], "invalid": false, "v_gene": "IGHV2-70*01", "d_gene": "IGHD1-1*01", "j_gene": "IGHJ4*02", "cdr3_length": 39, "mut_freqs": [0.04748603351955307], "n_mutations": [17], "input_seqs": ["CAGGTCACCTTGAGGGCGTCTGGTCCTCCGCTGCTGAAACCCACAAAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCCCACTCAGCACGAGTGGAATGTGTGTGAGCTGGATCCTTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTCATTGGGATGCTCATAAATACTACAGCACATCTCTGAAGACCAAGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACCTGGACCCTGTGAACACAGCCACGTATTACTGTGCACGGATACTCCCAACTGTCGGTTTTGATTACTGGGGCCAGGGCACCCTGGTCACCCTCTCCTCAA"], "naive_seq": "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACTCCCAACTGTCGGTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGHV2-70*01": 1.0}, "d_per_gene_support": {"IGHD1-1*01": 0.5179259636956137, "IGHD7-27*01": 0.46194660223124995, "IGHD2-2*01": 0.012423567887991514, "IGHD2-8*02": 0.0077038661851477445}, "j_per_gene_support": {"IGHJ4*02": 1.0}, "v_3p_del": 0, "d_5p_del": 4, "d_3p_del": 7, "j_5p_del": 5, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "TCC", "dj_insertion": "TCGGT", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "paired-uids": [["3c5f4c778a-igk"]], "loci": ["igh"], "codon_positions": {"v": 288, "j": 324}}, {"has_shm_indels": [false], "qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["789d880ef2-igh"], "invalid": false, "v_gene": "IGHV2-70*01", "d_gene": "IGHD3-9*01", "j_gene": "IGHJ4*02", "cdr3_length": 39, "mut_freqs": [0.061452513966480445], "n_mutations": [22], "input_seqs": ["CAGGTCACCTTGAGGGAGTTTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCTCACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCTCTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGGACTCATTTATTGGTATGATCATAAATAATACGGCACATCGCTGAAGAGGAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGATCCTTACAATTACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTTCACGGATACACTAAAGTGTGACTGTTGATTCCTGGGGCCAGGGAACCCTGGTCACCGTATCCTCAG"], "naive_seq": "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACACGATATTTTGACTGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGHV2-70*01": 1.0}, "d_per_gene_support": {"IGHD3-9*01": 0.8711821846318492, "IGHD1-26*01": 0.12881781536814396}, "j_per_gene_support": {"IGHJ4*02": 0.9990809476516511, "IGHJ5*02": 0.0009190523483490865}, "v_3p_del": 0, "d_5p_del": 5, "d_3p_del": 11, "j_5p_del": 6, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [true], "paired-uids": [["789d880ef2-igk"]], "loci": ["igh"], "codon_positions": {"v": 288, "j": 324}}, {"has_shm_indels": [false], "qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["b739ce37b7-igh"], "invalid": false, "v_gene": "IGHV1-69*04", "d_gene": "IGHD2-21*01", "j_gene": "IGHJ4*02", "cdr3_length": 48, "mut_freqs": [0.07692307692307693], "n_mutations": [28], "input_seqs": ["NNNCAGGTCCAGCTGATGCAGTCTTGGGCTGAGCTGAAGAAGCCTGTGTCCTCGCTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTAAGATATCAACTGTGTGCGACAGGCCCCTGGACAGGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACATCGCACAGAAGTTCCACGGCAGAGTCACGATTCCCGTGGAAATATACACGATGACAGCCTACATGGAGCTGAGCAGCATGAGATCCGGGGACACGGCCGTGTATTACTGTGGGAGATGACGGGAGGGAGATGGTGTTGATTACTTTGACTATTGGGGCCAGGGAACCCTGGTCACCGTCTTCTCAC"], "naive_seq": "NNNCAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGATGACGGGAGGGAGATGGTGGTGATTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGHV1-69*04": 1.0}, "d_per_gene_support": {"IGHD2-21*01": 0.986643663132013, "IGHD2-8*01": 0.013356336867992152}, "j_per_gene_support": {"IGHJ4*02": 1.0}, "v_3p_del": 2, "d_5p_del": 9, "d_3p_del": 9, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "TGACGGGAGGGAGA", "dj_insertion": "", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [true], "paired-uids": [["253ca59333-igh", "253ca59333-igl", "b739ce37b7-igl"]], "loci": ["igh"], "codon_positions": {"v": 288, "j": 333}}, {"has_shm_indels": [false], "qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["bb82ebe094-igh"], "invalid": false, "v_gene": "IGHV2-70*01", "d_gene": "IGHD3-3*01", "j_gene": "IGHJ4*02", "cdr3_length": 39, "mut_freqs": [0.08659217877094973], "n_mutations": [31], "input_seqs": ["CAGGTCACCTTGAGGGAGTTTGGTCCTGCGCTGGTGAAATCCAGACAGATCCTCACCGTGACCTGGACCTTCTCTGGGTTCTCACTCGGCACTAATGGAATGTGTGTGAGCTGGAACCGTCAGCCCCCAGGAAAGGCCATGGAGTGGCTTGGACGCATTGATTGGGATGAGCATAAATACTACAGCACATCGCTGAAAAGCAGGCTCACCATCTCCAAGGACACCTCCAAACACCGGGTGGTCCTTACAATGACCAACATGAACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACTATTGATTTTAGAACTTGATTACTGGGGCTAGGGAACCCTGTTCACCGTCTCCTCAG"], "naive_seq": "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACTGTGGTTATTATACCTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGHV2-70*01": 1.0}, "d_per_gene_support": {"IGHD3-3*01": 0.9943582793920566, "IGHD3-10*03": 0.005276888283576634, "IGHD3-16*03": 0.0003648323243679322}, "j_per_gene_support": {"IGHJ4*02": 0.999999652997676, "IGHJ5*02": 3.4700232837683193e-07}, "v_3p_del": 0, "d_5p_del": 17, "d_3p_del": 0, "j_5p_del": 6, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "T", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [true], "paired-uids": [["bb82ebe094-igk"]], "loci": ["igh"], "codon_positions": {"v": 288, "j": 324}}, {"has_shm_indels": [false], "qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["bc11af4843-igh"], "invalid": false, "v_gene": "IGHV2-70*01", "d_gene": "IGHD2-2*01", "j_gene": "IGHJ4*02", "cdr3_length": 39, "mut_freqs": [0.055865921787709494], "n_mutations": [20], "input_seqs": ["CAGGTCAGCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTGTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCAAGGGAAGGCCCTGGAGTGGCTTGCCCTCATTGATTGGGATGATCATAAATACTACAGCAGGACTGTGAAGACCAGGCTCACCATCTTCCAGTACACCTCCAGAAAACAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACTATGCAGAGTCAGCTTTGATTGCTGGGGCCAGGGAAGCCTGGTCACCGTGTCCCCAG"], "naive_seq": "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACTATGCCGAGTCAGCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGHV2-70*01": 1.0}, "d_per_gene_support": {"IGHD2-2*01": 0.6174262685843298, "IGHD2-8*01": 0.23214255827355904, "IGHD2-8*02": 0.1504311731421054}, "j_per_gene_support": {"IGHJ4*02": 0.9999806387199804, "IGHJ5*02": 1.9361280021906524e-05}, "v_3p_del": 0, "d_5p_del": 25, "d_3p_del": 0, "j_5p_del": 4, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "GAGTCAG", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "paired-uids": [["bc11af4843-igk", "eee6809ad6-igh", "eee6809ad6-igl"]], "loci": ["igh"], "codon_positions": {"v": 288, "j": 324}}, {"has_shm_indels": [false], "qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["db63559ea9-igh"], "invalid": false, "v_gene": "IGHV2-70*01", "d_gene": "IGHD2-8*01", "j_gene": "IGHJ4*02", "cdr3_length": 33, "mut_freqs": [0.07102272727272728], "n_mutations": [25], "input_seqs": ["CTGGTCACCTTGAGGGAGTTCGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTGCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGACAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGGACTCATTGATTGGGATGATCATAAATACTGCTGCGCAGCTCTGGCGACCAGGATCACCATCTCCAAGGACACCTCCAAGGACCAGCTGGTCCTTACAATGATCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACTCATAATTGTGGACTTTTGGGGCCAGGGAACACTGGTTACCGTCTCCTCAG"], "naive_seq": "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATACTACTAATGGTGGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGHV2-70*01": 1.0}, "d_per_gene_support": {"IGHD2-8*01": 0.9889562998364885, "IGHD2-21*01": 0.01104370016352039}, "j_per_gene_support": {"IGHJ4*02": 0.999992566973389, "IGHJ5*02": 7.433026603994982e-06}, "v_3p_del": 0, "d_5p_del": 9, "d_3p_del": 11, "j_5p_del": 8, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "paired-uids": [["db63559ea9-igk", "e11acbe3ab-igh"]], "loci": ["igh"], "codon_positions": {"v": 288, "j": 318}}]}