oscura 0.0.1__py3-none-any.whl → 0.1.0__py3-none-any.whl

oscura/visualization/specialized.py

@@ -0,0 +1,553 @@
+"""Specialized plot types for protocol analysis and state visualization.
+
+This module provides specialized visualizations including protocol timing
+diagrams, state machine views, and bus transaction timelines.
+
+
+Example:
+    >>> from oscura.visualization.specialized import plot_protocol_timing
+    >>> fig = plot_protocol_timing(decoded_packets, sample_rate=1e6)
+
+References:
+    - Wavedrom-style digital waveform rendering
+    - State machine diagram standards
+    - Bus protocol visualization best practices
+"""
+
+from __future__ import annotations
+
+from dataclasses import dataclass
+from typing import TYPE_CHECKING, Literal
+
+import numpy as np
+
+if TYPE_CHECKING:
+    from matplotlib.axes import Axes
+    from matplotlib.figure import Figure
+    from numpy.typing import NDArray
+
+try:
+    import matplotlib.pyplot as plt
+    from matplotlib import patches
+
+    HAS_MATPLOTLIB = True
+except ImportError:
+    HAS_MATPLOTLIB = False
+
+
+@dataclass
+class ProtocolSignal:
+    """Protocol signal for timing diagram.
+
+    Attributes:
+        name: Signal name
+        data: Signal data (0/1 for digital, values for analog)
+        type: Signal type ("digital", "clock", "bus", "analog")
+        transitions: List of transition times
+        annotations: Dict of time -> annotation text
+    """
+
+    name: str
+    data: NDArray[np.float64]
+    type: Literal["digital", "clock", "bus", "analog"] = "digital"
+    transitions: list[float] | None = None
+    annotations: dict[float, str] | None = None
+
+
+@dataclass
+class StateTransition:
+    """State machine transition.
+
+    Attributes:
+        from_state: Source state name
+        to_state: Target state name
+        condition: Transition condition/label
+        style: Line style ("solid", "dashed", "dotted")
+    """
+
+    from_state: str
+    to_state: str
+    condition: str = ""
+    style: Literal["solid", "dashed", "dotted"] = "solid"
+
+
+def plot_protocol_timing(
+    signals: list[ProtocolSignal],
+    sample_rate: float,
+    *,
+    time_range: tuple[float, float] | None = None,
+    time_unit: str = "auto",
+    style: Literal["wavedrom", "classic"] = "wavedrom",
+    figsize: tuple[float, float] | None = None,
+    title: str | None = None,
+) -> Figure:
+    """Plot protocol timing diagram in wavedrom style.
+
+    Creates a timing diagram showing digital signals, clock edges, and
+    bus transactions with annotations for protocol events.
+
+    Args:
+        signals: List of ProtocolSignal objects to plot.
+        sample_rate: Sample rate in Hz.
+        time_range: Time range to plot (t_min, t_max) in seconds. None = full range.
+        time_unit: Time unit for x-axis ("s", "ms", "us", "ns", "auto").
+        style: Diagram style ("wavedrom" = clean digital, "classic" = traditional).
+        figsize: Figure size (width, height). Auto-calculated if None.
+        title: Plot title.
+
+    Returns:
+        Matplotlib Figure object.
+
+    Raises:
+        ImportError: If matplotlib is not available.
+        ValueError: If signals list is empty.
+
+    Example:
+        >>> sda = ProtocolSignal("SDA", sda_data, type="digital")
+        >>> scl = ProtocolSignal("SCL", scl_data, type="clock")
+        >>> fig = plot_protocol_timing(
+        ...     [scl, sda],
+        ...     sample_rate=1e6,
+        ...     style="wavedrom",
+        ...     title="I2C Transaction"
+        ... )
+
+    References:
+        VIS-021: Specialized - Protocol Timing Diagram
+        Wavedrom digital waveform rendering
+    """
+    if not HAS_MATPLOTLIB:
+        raise ImportError("matplotlib is required for visualization")
+
+    if len(signals) == 0:
+        raise ValueError("signals list cannot be empty")
+
+    n_signals = len(signals)
+
+    # Auto-calculate figure size
+    if figsize is None:
+        width = 12
+        height = max(4, n_signals * 0.8 + 1)
+        figsize = (width, height)
+
+    fig, axes = plt.subplots(
+        n_signals,
+        1,
+        figsize=figsize,
+        sharex=True,
+        gridspec_kw={"hspace": 0.1},
+    )
+
+    if n_signals == 1:
+        axes = [axes]
+
+    # Determine time range
+    if time_range is None:
+        max_len = max(len(sig.data) for sig in signals)
+        t_min = 0.0
+        t_max = max_len / sample_rate
+    else:
+        t_min, t_max = time_range
+
+    # Select time unit
+    if time_unit == "auto":
+        time_range_val = t_max - t_min
+        if time_range_val < 1e-6:
+            time_unit = "ns"
+            time_mult = 1e9
+        elif time_range_val < 1e-3:
+            time_unit = "us"
+            time_mult = 1e6
+        elif time_range_val < 1:
+            time_unit = "ms"
+            time_mult = 1e3
+        else:
+            time_unit = "s"
+            time_mult = 1.0
+    else:
+        time_mult = {"s": 1.0, "ms": 1e3, "us": 1e6, "ns": 1e9}.get(time_unit, 1.0)
+
+    # Plot each signal
+    for _idx, (signal, ax) in enumerate(zip(signals, axes, strict=False)):
+        # Create time vector
+        time = np.arange(len(signal.data)) / sample_rate * time_mult
+
+        # Filter to time range
+        mask = (time >= t_min * time_mult) & (time <= t_max * time_mult)
+        time = time[mask]
+        data = signal.data[mask]
+
+        if style == "wavedrom":
+            _plot_wavedrom_signal(ax, time, data, signal)
+        else:
+            _plot_classic_signal(ax, time, data, signal)
+
+        # Add signal name label
+        ax.set_ylabel(signal.name, rotation=0, ha="right", va="center", fontsize=10)
+        ax.set_ylim(-0.2, 1.3)
+
+        # Remove y-axis ticks
+        ax.set_yticks([])
+
+        # Grid for timing
+        ax.grid(True, axis="x", alpha=0.3, linestyle=":")
+
+        # Add annotations
+        if signal.annotations:
+            for t, text in signal.annotations.items():
+                if t_min <= t <= t_max:
+                    ax.annotate(
+                        text,
+                        xy=(t * time_mult, 1.2),
+                        fontsize=8,
+                        ha="center",
+                        bbox={"boxstyle": "round,pad=0.3", "facecolor": "yellow", "alpha": 0.7},
+                    )
+
+    # X-axis label only on bottom plot
+    axes[-1].set_xlabel(f"Time ({time_unit})", fontsize=11)
+
+    if title:
+        fig.suptitle(title, fontsize=14, y=0.98)
+
+    fig.tight_layout()
+    return fig
+
+
+def _plot_wavedrom_signal(
+    ax: Axes,
+    time: NDArray[np.float64],
+    data: NDArray[np.float64],
+    signal: ProtocolSignal,
+) -> None:
+    """Plot signal in wavedrom style (clean digital waveform)."""
+    if signal.type == "clock":
+        # Clock signal: square wave
+        for i in range(len(time) - 1):
+            level = 1 if data[i] > 0.5 else 0
+            ax.plot(
+                [time[i], time[i + 1]],
+                [level, level],
+                "b-",
+                linewidth=1.5,
+            )
+            # Vertical transition
+            if i < len(time) - 1:
+                next_level = 1 if data[i + 1] > 0.5 else 0
+                if level != next_level:
+                    ax.plot(
+                        [time[i + 1], time[i + 1]],
+                        [level, next_level],
+                        "b-",
+                        linewidth=1.5,
+                    )
+
+    elif signal.type == "digital":
+        # Digital signal: step function with transitions
+        for i in range(len(time) - 1):
+            level = 1 if data[i] > 0.5 else 0
+            ax.plot(
+                [time[i], time[i + 1]],
+                [level, level],
+                "k-",
+                linewidth=1.5,
+            )
+            # Vertical transition with slight slant for visual clarity
+            if i < len(time) - 1:
+                next_level = 1 if data[i + 1] > 0.5 else 0
+                if level != next_level:
+                    transition_width = (time[i + 1] - time[i]) * 0.1
+                    ax.plot(
+                        [time[i + 1] - transition_width, time[i + 1]],
+                        [level, next_level],
+                        "k-",
+                        linewidth=1.5,
+                    )
+
+    elif signal.type == "bus":
+        # Bus signal: show as high-impedance or data values
+        ax.fill_between(time, 0.3, 0.7, alpha=0.3, color="gray")
+        ax.plot(time, np.full_like(time, 0.5), "k-", linewidth=0.5)
+
+    else:
+        # Analog signal
+        ax.plot(time, data, "r-", linewidth=1.2)
+
+
+def _plot_classic_signal(
+    ax: Axes,
+    time: NDArray[np.float64],
+    data: NDArray[np.float64],
+    signal: ProtocolSignal,
+) -> None:
+    """Plot signal in classic style (traditional oscilloscope-like)."""
+    ax.plot(time, data, "b-", linewidth=1.2)
+    ax.axhline(0.5, color="gray", linestyle="--", linewidth=0.5, alpha=0.5)
+
+
+def plot_state_machine(
+    states: list[str],
+    transitions: list[StateTransition],
+    *,
+    initial_state: str | None = None,
+    final_states: list[str] | None = None,
+    layout: Literal["circular", "hierarchical", "force"] = "circular",
+    figsize: tuple[float, float] = (10, 8),
+    title: str | None = None,
+) -> Figure:
+    """Plot state machine diagram.
+
+    Creates a state diagram showing states as nodes and transitions as
+    directed edges with condition labels.
+
+    Args:
+        states: List of state names.
+        transitions: List of StateTransition objects.
+        initial_state: Initial state (marked with double circle).
+        final_states: List of final states (marked with double circle).
+        layout: Layout algorithm for state positioning.
+        figsize: Figure size (width, height).
+        title: Plot title.
+
+    Returns:
+        Matplotlib Figure object.
+
+    Raises:
+        ImportError: If matplotlib is not available.
+
+    Example:
+        >>> states = ["IDLE", "ACTIVE", "WAIT", "DONE"]
+        >>> transitions = [
+        ...     StateTransition("IDLE", "ACTIVE", "START"),
+        ...     StateTransition("ACTIVE", "WAIT", "BUSY"),
+        ...     StateTransition("WAIT", "ACTIVE", "RETRY"),
+        ...     StateTransition("ACTIVE", "DONE", "COMPLETE"),
+        ... ]
+        >>> fig = plot_state_machine(
+        ...     states, transitions, initial_state="IDLE", final_states=["DONE"]
+        ... )
+
+    References:
+        VIS-022: Specialized - State Machine View
+    """
+    if not HAS_MATPLOTLIB:
+        raise ImportError("matplotlib is required for visualization")
+
+    fig, ax = plt.subplots(figsize=figsize)
+
+    # Calculate state positions using selected layout
+    positions = _calculate_state_positions(states, layout)
+
+    # Draw states as circles
+    state_radius = 0.15
+
+    for state, (x, y) in positions.items():
+        # Draw state circle
+        circle = patches.Circle(
+            (x, y),
+            state_radius,
+            fill=True,
+            facecolor="lightblue",
+            edgecolor="black",
+            linewidth=2.0,
+        )
+        ax.add_patch(circle)
+
+        # Mark initial state with double circle
+        if state == initial_state:
+            outer_circle = patches.Circle(
+                (x, y),
+                state_radius * 1.2,
+                fill=False,
+                edgecolor="black",
+                linewidth=2.0,
+            )
+            ax.add_patch(outer_circle)
+
+        # Mark final states with double circle
+        if final_states and state in final_states:
+            inner_circle = patches.Circle(
+                (x, y),
+                state_radius * 0.8,
+                fill=False,
+                edgecolor="black",
+                linewidth=2.0,
+            )
+            ax.add_patch(inner_circle)
+
+        # Add state label
+        ax.text(
+            x,
+            y,
+            state,
+            ha="center",
+            va="center",
+            fontsize=10,
+            fontweight="bold",
+        )
+
+    # Draw transitions as arrows
+    for trans in transitions:
+        if trans.from_state not in positions or trans.to_state not in positions:
+            continue
+
+        x1, y1 = positions[trans.from_state]
+        x2, y2 = positions[trans.to_state]
+
+        # Calculate arrow start/end on circle perimeter
+        dx = x2 - x1
+        dy = y2 - y1
+        dist = np.sqrt(dx**2 + dy**2)
+
+        if dist < 1e-6:
+            # Self-loop
+            _draw_self_loop(ax, x1, y1, state_radius, trans.condition)
+            continue
+
+        # Normalize
+        dx_norm = dx / dist
+        dy_norm = dy / dist
+
+        # Arrow start/end on circle edges
+        arrow_start_x = x1 + dx_norm * state_radius
+        arrow_start_y = y1 + dy_norm * state_radius
+        arrow_end_x = x2 - dx_norm * state_radius
+        arrow_end_y = y2 - dy_norm * state_radius
+
+        # Line style
+        linestyle = {
+            "solid": "-",
+            "dashed": "--",
+            "dotted": ":",
+        }.get(trans.style, "-")
+
+        # Draw arrow
+        ax.annotate(
+            "",
+            xy=(arrow_end_x, arrow_end_y),
+            xytext=(arrow_start_x, arrow_start_y),
+            arrowprops={
+                "arrowstyle": "->",
+                "lw": 1.5,
+                "linestyle": linestyle,
+                "color": "black",
+            },
+        )
+
+        # Add transition label
+        if trans.condition:
+            mid_x = (x1 + x2) / 2
+            mid_y = (y1 + y2) / 2
+            ax.text(
+                mid_x,
+                mid_y,
+                trans.condition,
+                fontsize=8,
+                ha="center",
+                bbox={
+                    "boxstyle": "round,pad=0.3",
+                    "facecolor": "white",
+                    "edgecolor": "gray",
+                    "alpha": 0.9,
+                },
+            )
+
+    # Set axis properties
+    ax.set_aspect("equal")
+    ax.axis("off")
+    ax.set_xlim(-0.2, 1.2)
+    ax.set_ylim(-0.2, 1.2)
+
+    if title:
+        ax.set_title(title, fontsize=14, pad=20)
+
+    fig.tight_layout()
+    return fig
+
+
+def _calculate_state_positions(
+    states: list[str],
+    layout: str,
+) -> dict[str, tuple[float, float]]:
+    """Calculate state positions using layout algorithm."""
+    n_states = len(states)
+    positions = {}
+
+    if layout == "circular":
+        # Arrange states in a circle
+        angle_step = 2 * np.pi / n_states
+        for i, state in enumerate(states):
+            angle = i * angle_step
+            x = 0.5 + 0.4 * np.cos(angle)
+            y = 0.5 + 0.4 * np.sin(angle)
+            positions[state] = (x, y)
+
+    elif layout == "hierarchical":
+        # Arrange in rows (simplified hierarchical)
+        states_per_row = int(np.ceil(np.sqrt(n_states)))
+        for i, state in enumerate(states):
+            row = i // states_per_row
+            col = i % states_per_row
+            x = (col + 0.5) / states_per_row
+            y = 1.0 - (row + 0.5) / np.ceil(n_states / states_per_row)
+            positions[state] = (x, y)
+
+    else:  # force-directed (simplified)
+        # Use random positions as a placeholder for true force-directed layout
+        np.random.seed(42)
+        for i, state in enumerate(states):  # noqa: B007
+            x = 0.2 + 0.6 * np.random.rand()
+            y = 0.2 + 0.6 * np.random.rand()
+            positions[state] = (x, y)
+
+    return positions
+
+
+def _draw_self_loop(
+    ax: Axes,
+    x: float,
+    y: float,
+    radius: float,
+    label: str,
+) -> None:
+    """Draw self-loop transition on state."""
+    # Draw arc above state
+    arc = patches.Arc(
+        (x, y + radius),
+        width=radius * 1.5,
+        height=radius * 1.5,
+        angle=0,
+        theta1=0,
+        theta2=180,
+        linewidth=1.5,
+        edgecolor="black",
+        fill=False,
+    )
+    ax.add_patch(arc)
+
+    # Add arrow head
+    ax.annotate(
+        "",
+        xy=(x - radius * 0.7, y + radius * 0.3),
+        xytext=(x - radius * 0.5, y + radius * 0.5),
+        arrowprops={"arrowstyle": "->", "lw": 1.5, "color": "black"},
+    )
+
+    # Add label
+    if label:
+        ax.text(
+            x,
+            y + radius * 2.2,
+            label,
+            fontsize=8,
+            ha="center",
+            bbox={"boxstyle": "round,pad=0.2", "facecolor": "white", "alpha": 0.9},
+        )
+
+
+__all__ = [
+    "ProtocolSignal",
+    "StateTransition",
+    "plot_protocol_timing",
+    "plot_state_machine",
+]