ncbi-datasets-pyclient 18.4.0__py3-none-any.whl → 18.13.0__py3-none-any.whl

ncbi/datasets/openapi/models/v2reports_message.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_name_and_authority.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_name_and_authority_note.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.
@@ -30,7 +29,7 @@ class V2reportsNameAndAuthorityNote(BaseModel):
     """ # noqa: E501
     name: Optional[StrictStr] = None
     note: Optional[StrictStr] = None
-    note_classifier: Optional[V2reportsNameAndAuthorityNoteClassifier] = None
+    note_classifier: Optional[V2reportsNameAndAuthorityNoteClassifier] = V2reportsNameAndAuthorityNoteClassifier.NO_AUTHORITY_CLASSIFIER
     __properties: ClassVar[List[str]] = ["name", "note", "note_classifier"]
 
     model_config = ConfigDict(
@@ -86,7 +85,7 @@ class V2reportsNameAndAuthorityNote(BaseModel):
         _obj = cls.model_validate({
             "name": obj.get("name"),
             "note": obj.get("note"),
-            "note_classifier": obj.get("note_classifier")
+            "note_classifier": obj.get("note_classifier") if obj.get("note_classifier") is not None else V2reportsNameAndAuthorityNoteClassifier.NO_AUTHORITY_CLASSIFIER
         })
         return _obj
 

ncbi/datasets/openapi/models/v2reports_name_and_authority_note_classifier.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_name_and_authority_publication.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_nomenclature_authority.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_organelle.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.
@@ -34,7 +33,7 @@ class V2reportsOrganelle(BaseModel):
     """
     V2reportsOrganelle
     """ # noqa: E501
-    description: Optional[V2reportsOrganelleType] = None
+    description: Optional[V2reportsOrganelleType] = V2reportsOrganelleType.ORGANELLE_TYPE_UNKNOWN
     genbank: Optional[V2reportsSequenceInformation] = None
     refseq: Optional[V2reportsSequenceInformation] = None
     organism: Optional[V2reportsOrganism] = None
@@ -42,7 +41,7 @@ class V2reportsOrganelle(BaseModel):
     biosample: Optional[V2reportsOrganelleBiosample] = None
     gene_counts: Optional[V2reportsOrganelleGeneCounts] = None
     length: Optional[StrictInt] = None
-    topology: Optional[V2reportsOrganelleTopology] = None
+    topology: Optional[V2reportsOrganelleTopology] = V2reportsOrganelleTopology.TOPOLOGY_UNKNOWN
     gene_count: Optional[StrictInt] = None
     __properties: ClassVar[List[str]] = ["description", "genbank", "refseq", "organism", "bioprojects", "biosample", "gene_counts", "length", "topology", "gene_count"]
 
@@ -119,7 +118,7 @@ class V2reportsOrganelle(BaseModel):
             return cls.model_validate(obj)
 
         _obj = cls.model_validate({
-            "description": obj.get("description"),
+            "description": obj.get("description") if obj.get("description") is not None else V2reportsOrganelleType.ORGANELLE_TYPE_UNKNOWN,
             "genbank": V2reportsSequenceInformation.from_dict(obj["genbank"]) if obj.get("genbank") is not None else None,
             "refseq": V2reportsSequenceInformation.from_dict(obj["refseq"]) if obj.get("refseq") is not None else None,
             "organism": V2reportsOrganism.from_dict(obj["organism"]) if obj.get("organism") is not None else None,
@@ -127,7 +126,7 @@ class V2reportsOrganelle(BaseModel):
             "biosample": V2reportsOrganelleBiosample.from_dict(obj["biosample"]) if obj.get("biosample") is not None else None,
             "gene_counts": V2reportsOrganelleGeneCounts.from_dict(obj["gene_counts"]) if obj.get("gene_counts") is not None else None,
             "length": obj.get("length"),
-            "topology": obj.get("topology"),
+            "topology": obj.get("topology") if obj.get("topology") is not None else V2reportsOrganelleTopology.TOPOLOGY_UNKNOWN,
             "gene_count": obj.get("gene_count")
         })
         return _obj

ncbi/datasets/openapi/models/v2reports_organelle_biosample.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_organelle_data_reports.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_organelle_gene_counts.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_organelle_info.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_organelle_topology.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_organelle_type.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_organism.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_orientation.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_paired_assembly.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.
@@ -29,14 +28,15 @@ class V2reportsPairedAssembly(BaseModel):
     V2reportsPairedAssembly
     """ # noqa: E501
     accession: Optional[StrictStr] = None
-    status: Optional[V2reportsAssemblyStatus] = None
+    status: Optional[V2reportsAssemblyStatus] = V2reportsAssemblyStatus.ASSEMBLY_STATUS_UNKNOWN
     annotation_name: Optional[StrictStr] = None
     only_genbank: Optional[StrictStr] = None
     only_refseq: Optional[StrictStr] = None
     changed: Optional[StrictStr] = None
     manual_diff: Optional[StrictStr] = None
     refseq_genbank_are_different: Optional[StrictBool] = None
-    __properties: ClassVar[List[str]] = ["accession", "status", "annotation_name", "only_genbank", "only_refseq", "changed", "manual_diff", "refseq_genbank_are_different"]
+    differences: Optional[StrictStr] = None
+    __properties: ClassVar[List[str]] = ["accession", "status", "annotation_name", "only_genbank", "only_refseq", "changed", "manual_diff", "refseq_genbank_are_different", "differences"]
 
     model_config = ConfigDict(
         populate_by_name=True,
@@ -90,13 +90,14 @@ class V2reportsPairedAssembly(BaseModel):
 
         _obj = cls.model_validate({
             "accession": obj.get("accession"),
-            "status": obj.get("status"),
+            "status": obj.get("status") if obj.get("status") is not None else V2reportsAssemblyStatus.ASSEMBLY_STATUS_UNKNOWN,
             "annotation_name": obj.get("annotation_name"),
             "only_genbank": obj.get("only_genbank"),
             "only_refseq": obj.get("only_refseq"),
             "changed": obj.get("changed"),
             "manual_diff": obj.get("manual_diff"),
-            "refseq_genbank_are_different": obj.get("refseq_genbank_are_different")
+            "refseq_genbank_are_different": obj.get("refseq_genbank_are_different"),
+            "differences": obj.get("differences")
         })
         return _obj
 

ncbi/datasets/openapi/models/v2reports_process_metadata.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_product_descriptor.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.
@@ -37,8 +36,8 @@ class V2reportsProductDescriptor(BaseModel):
     tax_id: Optional[StrictStr] = None
     taxname: Optional[StrictStr] = None
     common_name: Optional[StrictStr] = None
-    type: Optional[V2reportsGeneType] = None
-    rna_type: Optional[V2reportsRnaType] = None
+    type: Optional[V2reportsGeneType] = V2reportsGeneType.UNKNOWN
+    rna_type: Optional[V2reportsRnaType] = V2reportsRnaType.RNA_UNKNOWN
     transcripts: Optional[List[V2reportsTranscript]] = None
     transcript_count: Optional[StrictInt] = None
     protein_count: Optional[StrictInt] = None
@@ -116,8 +115,8 @@ class V2reportsProductDescriptor(BaseModel):
             "tax_id": obj.get("tax_id"),
             "taxname": obj.get("taxname"),
             "common_name": obj.get("common_name"),
-            "type": obj.get("type"),
-            "rna_type": obj.get("rna_type"),
+            "type": obj.get("type") if obj.get("type") is not None else V2reportsGeneType.UNKNOWN,
+            "rna_type": obj.get("rna_type") if obj.get("rna_type") is not None else V2reportsRnaType.RNA_UNKNOWN,
             "transcripts": [V2reportsTranscript.from_dict(_item) for _item in obj["transcripts"]] if obj.get("transcripts") is not None else None,
             "transcript_count": obj.get("transcript_count"),
             "protein_count": obj.get("protein_count"),

ncbi/datasets/openapi/models/v2reports_prokaryote_gene_location_completeness.py

@@ -0,0 +1,37 @@
+# coding: utf-8
+
+"""
+    NCBI Datasets API
+
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
+
+    The version of the OpenAPI document: v2
+    Generated by OpenAPI Generator (https://openapi-generator.tech)
+
+    Do not edit the class manually.
+"""  # noqa: E501
+
+
+from __future__ import annotations
+import json
+from enum import Enum
+from typing_extensions import Self
+
+
+class V2reportsProkaryoteGeneLocationCompleteness(str, Enum):
+    """
+    V2reportsProkaryoteGeneLocationCompleteness
+    """
+
+    """
+    allowed enum values
+    """
+    COMPLETE = 'complete'
+    PARTIAL = 'partial'
+
+    @classmethod
+    def from_json(cls, json_str: str) -> Self:
+        """Create an instance of V2reportsProkaryoteGeneLocationCompleteness from a JSON string"""
+        return cls(json.loads(json_str))
+
+

ncbi/datasets/openapi/models/v2reports_protein.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_protein_conserved_domain.py

@@ -0,0 +1,103 @@
+# coding: utf-8
+
+"""
+    NCBI Datasets API
+
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
+
+    The version of the OpenAPI document: v2
+    Generated by OpenAPI Generator (https://openapi-generator.tech)
+
+    Do not edit the class manually.
+"""  # noqa: E501
+
+
+from __future__ import annotations
+import pprint
+import re  # noqa: F401
+import json
+
+from pydantic import BaseModel, ConfigDict, StrictBool, StrictFloat, StrictInt, StrictStr
+from typing import Any, ClassVar, Dict, List, Optional, Union
+from typing import Optional, Set
+from typing_extensions import Self
+
+class V2reportsProteinConservedDomain(BaseModel):
+    """
+    V2reportsProteinConservedDomain
+    """ # noqa: E501
+    accession: Optional[StrictStr] = None
+    name: Optional[StrictStr] = None
+    description: Optional[StrictStr] = None
+    start: Optional[StrictInt] = None
+    stop: Optional[StrictInt] = None
+    specific: Optional[StrictBool] = None
+    partial: Optional[StrictBool] = None
+    evalue: Optional[Union[StrictFloat, StrictInt]] = None
+    bit_score: Optional[Union[StrictFloat, StrictInt]] = None
+    __properties: ClassVar[List[str]] = ["accession", "name", "description", "start", "stop", "specific", "partial", "evalue", "bit_score"]
+
+    model_config = ConfigDict(
+        populate_by_name=True,
+        validate_assignment=True,
+        protected_namespaces=(),
+    )
+
+
+    def to_str(self) -> str:
+        """Returns the string representation of the model using alias"""
+        return pprint.pformat(self.model_dump(by_alias=True))
+
+    def to_json(self) -> str:
+        """Returns the JSON representation of the model using alias"""
+        # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead
+        return json.dumps(self.to_dict())
+
+    @classmethod
+    def from_json(cls, json_str: str) -> Optional[Self]:
+        """Create an instance of V2reportsProteinConservedDomain from a JSON string"""
+        return cls.from_dict(json.loads(json_str))
+
+    def to_dict(self) -> Dict[str, Any]:
+        """Return the dictionary representation of the model using alias.
+
+        This has the following differences from calling pydantic's
+        `self.model_dump(by_alias=True)`:
+
+        * `None` is only added to the output dict for nullable fields that
+          were set at model initialization. Other fields with value `None`
+          are ignored.
+        """
+        excluded_fields: Set[str] = set([
+        ])
+
+        _dict = self.model_dump(
+            by_alias=True,
+            exclude=excluded_fields,
+            exclude_none=True,
+        )
+        return _dict
+
+    @classmethod
+    def from_dict(cls, obj: Optional[Dict[str, Any]]) -> Optional[Self]:
+        """Create an instance of V2reportsProteinConservedDomain from a dict"""
+        if obj is None:
+            return None
+
+        if not isinstance(obj, dict):
+            return cls.model_validate(obj)
+
+        _obj = cls.model_validate({
+            "accession": obj.get("accession"),
+            "name": obj.get("name"),
+            "description": obj.get("description"),
+            "start": obj.get("start"),
+            "stop": obj.get("stop"),
+            "specific": obj.get("specific"),
+            "partial": obj.get("partial"),
+            "evalue": obj.get("evalue"),
+            "bit_score": obj.get("bit_score")
+        })
+        return _obj
+
+

ncbi/datasets/openapi/models/v2reports_protein_data_report.py

@@ -0,0 +1,127 @@
+# coding: utf-8
+
+"""
+    NCBI Datasets API
+
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
+
+    The version of the OpenAPI document: v2
+    Generated by OpenAPI Generator (https://openapi-generator.tech)
+
+    Do not edit the class manually.
+"""  # noqa: E501
+
+
+from __future__ import annotations
+import pprint
+import re  # noqa: F401
+import json
+
+from pydantic import BaseModel, ConfigDict, StrictInt, StrictStr
+from typing import Any, ClassVar, Dict, List, Optional
+from ncbi.datasets.openapi.models.v2reports_functional_site import V2reportsFunctionalSite
+from ncbi.datasets.openapi.models.v2reports_protein_conserved_domain import V2reportsProteinConservedDomain
+from ncbi.datasets.openapi.models.v2reports_protein_family import V2reportsProteinFamily
+from typing import Optional, Set
+from typing_extensions import Self
+
+class V2reportsProteinDataReport(BaseModel):
+    """
+    V2reportsProteinDataReport
+    """ # noqa: E501
+    accession: Optional[StrictStr] = None
+    description: Optional[StrictStr] = None
+    length: Optional[StrictInt] = None
+    gene_id: Optional[StrictInt] = None
+    identical_protein_group: Optional[StrictInt] = None
+    tax_id: Optional[StrictInt] = None
+    conserved_domains: Optional[List[V2reportsProteinConservedDomain]] = None
+    functional_sites: Optional[List[V2reportsFunctionalSite]] = None
+    protein_families: Optional[List[V2reportsProteinFamily]] = None
+    __properties: ClassVar[List[str]] = ["accession", "description", "length", "gene_id", "identical_protein_group", "tax_id", "conserved_domains", "functional_sites", "protein_families"]
+
+    model_config = ConfigDict(
+        populate_by_name=True,
+        validate_assignment=True,
+        protected_namespaces=(),
+    )
+
+
+    def to_str(self) -> str:
+        """Returns the string representation of the model using alias"""
+        return pprint.pformat(self.model_dump(by_alias=True))
+
+    def to_json(self) -> str:
+        """Returns the JSON representation of the model using alias"""
+        # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead
+        return json.dumps(self.to_dict())
+
+    @classmethod
+    def from_json(cls, json_str: str) -> Optional[Self]:
+        """Create an instance of V2reportsProteinDataReport from a JSON string"""
+        return cls.from_dict(json.loads(json_str))
+
+    def to_dict(self) -> Dict[str, Any]:
+        """Return the dictionary representation of the model using alias.
+
+        This has the following differences from calling pydantic's
+        `self.model_dump(by_alias=True)`:
+
+        * `None` is only added to the output dict for nullable fields that
+          were set at model initialization. Other fields with value `None`
+          are ignored.
+        """
+        excluded_fields: Set[str] = set([
+        ])
+
+        _dict = self.model_dump(
+            by_alias=True,
+            exclude=excluded_fields,
+            exclude_none=True,
+        )
+        # override the default output from pydantic by calling `to_dict()` of each item in conserved_domains (list)
+        _items = []
+        if self.conserved_domains:
+            for _item_conserved_domains in self.conserved_domains:
+                if _item_conserved_domains:
+                    _items.append(_item_conserved_domains.to_dict())
+            _dict['conserved_domains'] = _items
+        # override the default output from pydantic by calling `to_dict()` of each item in functional_sites (list)
+        _items = []
+        if self.functional_sites:
+            for _item_functional_sites in self.functional_sites:
+                if _item_functional_sites:
+                    _items.append(_item_functional_sites.to_dict())
+            _dict['functional_sites'] = _items
+        # override the default output from pydantic by calling `to_dict()` of each item in protein_families (list)
+        _items = []
+        if self.protein_families:
+            for _item_protein_families in self.protein_families:
+                if _item_protein_families:
+                    _items.append(_item_protein_families.to_dict())
+            _dict['protein_families'] = _items
+        return _dict
+
+    @classmethod
+    def from_dict(cls, obj: Optional[Dict[str, Any]]) -> Optional[Self]:
+        """Create an instance of V2reportsProteinDataReport from a dict"""
+        if obj is None:
+            return None
+
+        if not isinstance(obj, dict):
+            return cls.model_validate(obj)
+
+        _obj = cls.model_validate({
+            "accession": obj.get("accession"),
+            "description": obj.get("description"),
+            "length": obj.get("length"),
+            "gene_id": obj.get("gene_id"),
+            "identical_protein_group": obj.get("identical_protein_group"),
+            "tax_id": obj.get("tax_id"),
+            "conserved_domains": [V2reportsProteinConservedDomain.from_dict(_item) for _item in obj["conserved_domains"]] if obj.get("conserved_domains") is not None else None,
+            "functional_sites": [V2reportsFunctionalSite.from_dict(_item) for _item in obj["functional_sites"]] if obj.get("functional_sites") is not None else None,
+            "protein_families": [V2reportsProteinFamily.from_dict(_item) for _item in obj["protein_families"]] if obj.get("protein_families") is not None else None
+        })
+        return _obj
+
+