ncbi-datasets-pyclient 18.4.0__py3-none-any.whl → 18.13.0__py3-none-any.whl

ncbi/datasets/openapi/models/v2_virus_annotation_report_request.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2_virus_availability.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2_virus_availability_request.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2_virus_data_report_request.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.
@@ -30,7 +29,7 @@ class V2VirusDataReportRequest(BaseModel):
     V2VirusDataReportRequest
     """ # noqa: E501
     filter: Optional[V2VirusDatasetFilter] = None
-    returned_content: Optional[V2VirusDataReportRequestContentType] = None
+    returned_content: Optional[V2VirusDataReportRequestContentType] = V2VirusDataReportRequestContentType.COMPLETE
     table_fields: Optional[List[StrictStr]] = None
     table_format: Optional[StrictStr] = None
     page_size: Optional[StrictInt] = None
@@ -92,7 +91,7 @@ class V2VirusDataReportRequest(BaseModel):
 
         _obj = cls.model_validate({
             "filter": V2VirusDatasetFilter.from_dict(obj["filter"]) if obj.get("filter") is not None else None,
-            "returned_content": obj.get("returned_content"),
+            "returned_content": obj.get("returned_content") if obj.get("returned_content") is not None else V2VirusDataReportRequestContentType.COMPLETE,
             "table_fields": obj.get("table_fields"),
             "table_format": obj.get("table_format"),
             "page_size": obj.get("page_size"),

ncbi/datasets/openapi/models/v2_virus_data_report_request_content_type.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2_virus_dataset_filter.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2_virus_dataset_report_type.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2_virus_dataset_request.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.
@@ -47,7 +46,7 @@ class V2VirusDatasetRequest(BaseModel):
     table_fields: Optional[List[V2VirusTableField]] = None
     include_sequence: Optional[List[V2ViralSequenceType]] = None
     aux_report: Optional[List[V2VirusDatasetReportType]] = None
-    format: Optional[V2TableFormat] = None
+    format: Optional[V2TableFormat] = V2TableFormat.TSV
     use_psg: Optional[StrictBool] = None
     __properties: ClassVar[List[str]] = ["accessions", "taxon", "taxons", "refseq_only", "annotated_only", "released_since", "updated_since", "host", "pangolin_classification", "geo_location", "usa_state", "complete_only", "table_fields", "include_sequence", "aux_report", "format", "use_psg"]
 
@@ -117,7 +116,7 @@ class V2VirusDatasetRequest(BaseModel):
             "table_fields": obj.get("table_fields"),
             "include_sequence": obj.get("include_sequence"),
             "aux_report": obj.get("aux_report"),
-            "format": obj.get("format"),
+            "format": obj.get("format") if obj.get("format") is not None else V2TableFormat.TSV,
             "use_psg": obj.get("use_psg")
         })
         return _obj

ncbi/datasets/openapi/models/v2_virus_table_field.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2archive_affiliation.py

@@ -0,0 +1,95 @@
+# coding: utf-8
+
+"""
+    NCBI Datasets API
+
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
+
+    The version of the OpenAPI document: v2
+    Generated by OpenAPI Generator (https://openapi-generator.tech)
+
+    Do not edit the class manually.
+"""  # noqa: E501
+
+
+from __future__ import annotations
+import pprint
+import re  # noqa: F401
+import json
+
+from pydantic import BaseModel, ConfigDict, StrictStr
+from typing import Any, ClassVar, Dict, List, Optional
+from ncbi.datasets.openapi.models.v2archive_location import V2archiveLocation
+from typing import Optional, Set
+from typing_extensions import Self
+
+class V2archiveAffiliation(BaseModel):
+    """
+    V2archiveAffiliation
+    """ # noqa: E501
+    affiliation: Optional[StrictStr] = None
+    division: Optional[StrictStr] = None
+    location: Optional[V2archiveLocation] = None
+    __properties: ClassVar[List[str]] = ["affiliation", "division", "location"]
+
+    model_config = ConfigDict(
+        populate_by_name=True,
+        validate_assignment=True,
+        protected_namespaces=(),
+    )
+
+
+    def to_str(self) -> str:
+        """Returns the string representation of the model using alias"""
+        return pprint.pformat(self.model_dump(by_alias=True))
+
+    def to_json(self) -> str:
+        """Returns the JSON representation of the model using alias"""
+        # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead
+        return json.dumps(self.to_dict())
+
+    @classmethod
+    def from_json(cls, json_str: str) -> Optional[Self]:
+        """Create an instance of V2archiveAffiliation from a JSON string"""
+        return cls.from_dict(json.loads(json_str))
+
+    def to_dict(self) -> Dict[str, Any]:
+        """Return the dictionary representation of the model using alias.
+
+        This has the following differences from calling pydantic's
+        `self.model_dump(by_alias=True)`:
+
+        * `None` is only added to the output dict for nullable fields that
+          were set at model initialization. Other fields with value `None`
+          are ignored.
+        """
+        excluded_fields: Set[str] = set([
+        ])
+
+        _dict = self.model_dump(
+            by_alias=True,
+            exclude=excluded_fields,
+            exclude_none=True,
+        )
+        # override the default output from pydantic by calling `to_dict()` of location
+        if self.location:
+            _dict['location'] = self.location.to_dict()
+        return _dict
+
+    @classmethod
+    def from_dict(cls, obj: Optional[Dict[str, Any]]) -> Optional[Self]:
+        """Create an instance of V2archiveAffiliation from a dict"""
+        if obj is None:
+            return None
+
+        if not isinstance(obj, dict):
+            return cls.model_validate(obj)
+
+        _obj = cls.model_validate({
+            "affiliation": obj.get("affiliation"),
+            "division": obj.get("division"),
+            "location": V2archiveLocation.from_dict(obj["location"]) if obj.get("location") is not None else None
+        })
+        return _obj
+
+

ncbi/datasets/openapi/models/v2archive_catalog.py

@@ -0,0 +1,121 @@
+# coding: utf-8
+
+"""
+    NCBI Datasets API
+
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
+
+    The version of the OpenAPI document: v2
+    Generated by OpenAPI Generator (https://openapi-generator.tech)
+
+    Do not edit the class manually.
+"""  # noqa: E501
+
+
+from __future__ import annotations
+import pprint
+import re  # noqa: F401
+import json
+
+from pydantic import BaseModel, ConfigDict, StrictStr
+from typing import Any, ClassVar, Dict, List, Optional
+from ncbi.datasets.openapi.models.v2archive_molecule_type import V2archiveMoleculeType
+from ncbi.datasets.openapi.models.v2archive_sequence import V2archiveSequence
+from ncbi.datasets.openapi.models.v2archive_submitter import V2archiveSubmitter
+from ncbi.datasets.openapi.models.v2archive_taxonomy_node import V2archiveTaxonomyNode
+from ncbi.datasets.openapi.models.v2reports_organelle_topology import V2reportsOrganelleTopology
+from typing import Optional, Set
+from typing_extensions import Self
+
+class V2archiveCatalog(BaseModel):
+    """
+    V2archiveCatalog
+    """ # noqa: E501
+    accession: Optional[StrictStr] = None
+    molecule_type: Optional[V2archiveMoleculeType] = V2archiveMoleculeType.MOLECULE_TYPE_UNSPECIFIED
+    definition: Optional[StrictStr] = None
+    taxonomy: Optional[V2archiveTaxonomyNode] = None
+    sequence: Optional[V2archiveSequence] = None
+    topology: Optional[V2reportsOrganelleTopology] = V2reportsOrganelleTopology.TOPOLOGY_UNKNOWN
+    modification_date: Optional[StrictStr] = None
+    publication_date: Optional[StrictStr] = None
+    submitters: Optional[List[V2archiveSubmitter]] = None
+    __properties: ClassVar[List[str]] = ["accession", "molecule_type", "definition", "taxonomy", "sequence", "topology", "modification_date", "publication_date", "submitters"]
+
+    model_config = ConfigDict(
+        populate_by_name=True,
+        validate_assignment=True,
+        protected_namespaces=(),
+    )
+
+
+    def to_str(self) -> str:
+        """Returns the string representation of the model using alias"""
+        return pprint.pformat(self.model_dump(by_alias=True))
+
+    def to_json(self) -> str:
+        """Returns the JSON representation of the model using alias"""
+        # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead
+        return json.dumps(self.to_dict())
+
+    @classmethod
+    def from_json(cls, json_str: str) -> Optional[Self]:
+        """Create an instance of V2archiveCatalog from a JSON string"""
+        return cls.from_dict(json.loads(json_str))
+
+    def to_dict(self) -> Dict[str, Any]:
+        """Return the dictionary representation of the model using alias.
+
+        This has the following differences from calling pydantic's
+        `self.model_dump(by_alias=True)`:
+
+        * `None` is only added to the output dict for nullable fields that
+          were set at model initialization. Other fields with value `None`
+          are ignored.
+        """
+        excluded_fields: Set[str] = set([
+        ])
+
+        _dict = self.model_dump(
+            by_alias=True,
+            exclude=excluded_fields,
+            exclude_none=True,
+        )
+        # override the default output from pydantic by calling `to_dict()` of taxonomy
+        if self.taxonomy:
+            _dict['taxonomy'] = self.taxonomy.to_dict()
+        # override the default output from pydantic by calling `to_dict()` of sequence
+        if self.sequence:
+            _dict['sequence'] = self.sequence.to_dict()
+        # override the default output from pydantic by calling `to_dict()` of each item in submitters (list)
+        _items = []
+        if self.submitters:
+            for _item_submitters in self.submitters:
+                if _item_submitters:
+                    _items.append(_item_submitters.to_dict())
+            _dict['submitters'] = _items
+        return _dict
+
+    @classmethod
+    def from_dict(cls, obj: Optional[Dict[str, Any]]) -> Optional[Self]:
+        """Create an instance of V2archiveCatalog from a dict"""
+        if obj is None:
+            return None
+
+        if not isinstance(obj, dict):
+            return cls.model_validate(obj)
+
+        _obj = cls.model_validate({
+            "accession": obj.get("accession"),
+            "molecule_type": obj.get("molecule_type") if obj.get("molecule_type") is not None else V2archiveMoleculeType.MOLECULE_TYPE_UNSPECIFIED,
+            "definition": obj.get("definition"),
+            "taxonomy": V2archiveTaxonomyNode.from_dict(obj["taxonomy"]) if obj.get("taxonomy") is not None else None,
+            "sequence": V2archiveSequence.from_dict(obj["sequence"]) if obj.get("sequence") is not None else None,
+            "topology": obj.get("topology") if obj.get("topology") is not None else V2reportsOrganelleTopology.TOPOLOGY_UNKNOWN,
+            "modification_date": obj.get("modification_date"),
+            "publication_date": obj.get("publication_date"),
+            "submitters": [V2archiveSubmitter.from_dict(_item) for _item in obj["submitters"]] if obj.get("submitters") is not None else None
+        })
+        return _obj
+
+

ncbi/datasets/openapi/models/v2archive_location.py

@@ -0,0 +1,95 @@
+# coding: utf-8
+
+"""
+    NCBI Datasets API
+
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
+
+    The version of the OpenAPI document: v2
+    Generated by OpenAPI Generator (https://openapi-generator.tech)
+
+    Do not edit the class manually.
+"""  # noqa: E501
+
+
+from __future__ import annotations
+import pprint
+import re  # noqa: F401
+import json
+
+from pydantic import BaseModel, ConfigDict, StrictStr
+from typing import Any, ClassVar, Dict, List, Optional
+from typing import Optional, Set
+from typing_extensions import Self
+
+class V2archiveLocation(BaseModel):
+    """
+    V2archiveLocation
+    """ # noqa: E501
+    city: Optional[StrictStr] = None
+    sub: Optional[StrictStr] = None
+    country: Optional[StrictStr] = None
+    street: Optional[StrictStr] = None
+    postal_code: Optional[StrictStr] = None
+    __properties: ClassVar[List[str]] = ["city", "sub", "country", "street", "postal_code"]
+
+    model_config = ConfigDict(
+        populate_by_name=True,
+        validate_assignment=True,
+        protected_namespaces=(),
+    )
+
+
+    def to_str(self) -> str:
+        """Returns the string representation of the model using alias"""
+        return pprint.pformat(self.model_dump(by_alias=True))
+
+    def to_json(self) -> str:
+        """Returns the JSON representation of the model using alias"""
+        # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead
+        return json.dumps(self.to_dict())
+
+    @classmethod
+    def from_json(cls, json_str: str) -> Optional[Self]:
+        """Create an instance of V2archiveLocation from a JSON string"""
+        return cls.from_dict(json.loads(json_str))
+
+    def to_dict(self) -> Dict[str, Any]:
+        """Return the dictionary representation of the model using alias.
+
+        This has the following differences from calling pydantic's
+        `self.model_dump(by_alias=True)`:
+
+        * `None` is only added to the output dict for nullable fields that
+          were set at model initialization. Other fields with value `None`
+          are ignored.
+        """
+        excluded_fields: Set[str] = set([
+        ])
+
+        _dict = self.model_dump(
+            by_alias=True,
+            exclude=excluded_fields,
+            exclude_none=True,
+        )
+        return _dict
+
+    @classmethod
+    def from_dict(cls, obj: Optional[Dict[str, Any]]) -> Optional[Self]:
+        """Create an instance of V2archiveLocation from a dict"""
+        if obj is None:
+            return None
+
+        if not isinstance(obj, dict):
+            return cls.model_validate(obj)
+
+        _obj = cls.model_validate({
+            "city": obj.get("city"),
+            "sub": obj.get("sub"),
+            "country": obj.get("country"),
+            "street": obj.get("street"),
+            "postal_code": obj.get("postal_code")
+        })
+        return _obj
+
+

ncbi/datasets/openapi/models/v2archive_modifier.py

@@ -0,0 +1,90 @@
+# coding: utf-8
+
+"""
+    NCBI Datasets API
+
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
+
+    The version of the OpenAPI document: v2
+    Generated by OpenAPI Generator (https://openapi-generator.tech)
+
+    Do not edit the class manually.
+"""  # noqa: E501
+
+
+from __future__ import annotations
+import pprint
+import re  # noqa: F401
+import json
+
+from pydantic import BaseModel, ConfigDict, StrictStr
+from typing import Any, ClassVar, Dict, List, Optional
+from ncbi.datasets.openapi.models.v2archive_taxonomy_subtype import V2archiveTaxonomySubtype
+from typing import Optional, Set
+from typing_extensions import Self
+
+class V2archiveModifier(BaseModel):
+    """
+    V2archiveModifier
+    """ # noqa: E501
+    subtype: Optional[V2archiveTaxonomySubtype] = V2archiveTaxonomySubtype.UNKNOWN
+    subname: Optional[StrictStr] = None
+    __properties: ClassVar[List[str]] = ["subtype", "subname"]
+
+    model_config = ConfigDict(
+        populate_by_name=True,
+        validate_assignment=True,
+        protected_namespaces=(),
+    )
+
+
+    def to_str(self) -> str:
+        """Returns the string representation of the model using alias"""
+        return pprint.pformat(self.model_dump(by_alias=True))
+
+    def to_json(self) -> str:
+        """Returns the JSON representation of the model using alias"""
+        # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead
+        return json.dumps(self.to_dict())
+
+    @classmethod
+    def from_json(cls, json_str: str) -> Optional[Self]:
+        """Create an instance of V2archiveModifier from a JSON string"""
+        return cls.from_dict(json.loads(json_str))
+
+    def to_dict(self) -> Dict[str, Any]:
+        """Return the dictionary representation of the model using alias.
+
+        This has the following differences from calling pydantic's
+        `self.model_dump(by_alias=True)`:
+
+        * `None` is only added to the output dict for nullable fields that
+          were set at model initialization. Other fields with value `None`
+          are ignored.
+        """
+        excluded_fields: Set[str] = set([
+        ])
+
+        _dict = self.model_dump(
+            by_alias=True,
+            exclude=excluded_fields,
+            exclude_none=True,
+        )
+        return _dict
+
+    @classmethod
+    def from_dict(cls, obj: Optional[Dict[str, Any]]) -> Optional[Self]:
+        """Create an instance of V2archiveModifier from a dict"""
+        if obj is None:
+            return None
+
+        if not isinstance(obj, dict):
+            return cls.model_validate(obj)
+
+        _obj = cls.model_validate({
+            "subtype": obj.get("subtype") if obj.get("subtype") is not None else V2archiveTaxonomySubtype.UNKNOWN,
+            "subname": obj.get("subname")
+        })
+        return _obj
+
+

ncbi/datasets/openapi/models/v2archive_molecule_type.py

@@ -0,0 +1,43 @@
+# coding: utf-8
+
+"""
+    NCBI Datasets API
+
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
+
+    The version of the OpenAPI document: v2
+    Generated by OpenAPI Generator (https://openapi-generator.tech)
+
+    Do not edit the class manually.
+"""  # noqa: E501
+
+
+from __future__ import annotations
+import json
+from enum import Enum
+from typing_extensions import Self
+
+
+class V2archiveMoleculeType(str, Enum):
+    """
+    V2archiveMoleculeType
+    """
+
+    """
+    allowed enum values
+    """
+    MOLECULE_TYPE_UNSPECIFIED = 'MOLECULE_TYPE_UNSPECIFIED'
+    GENOMIC_DNA = 'GENOMIC_DNA'
+    GENOMIC_RNA = 'GENOMIC_RNA'
+    PRECURSOR_RNA = 'PRECURSOR_RNA'
+    MESSENGER_RNA = 'MESSENGER_RNA'
+    TRANSFER_RNA = 'TRANSFER_RNA'
+    RIBOSOMAL_RNA = 'RIBOSOMAL_RNA'
+    AMINO_ACID = 'AMINO_ACID'
+
+    @classmethod
+    def from_json(cls, json_str: str) -> Self:
+        """Create an instance of V2archiveMoleculeType from a JSON string"""
+        return cls(json.loads(json_str))
+
+