ncbi-datasets-pyclient 18.4.0__py3-none-any.whl → 18.13.0__py3-none-any.whl

ncbi/datasets/openapi/models/ncbiprotddv2_similar_structure_report.py

@@ -0,0 +1,121 @@
+# coding: utf-8
+
+"""
+    NCBI Datasets API
+
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
+
+    The version of the OpenAPI document: v2
+    Generated by OpenAPI Generator (https://openapi-generator.tech)
+
+    Do not edit the class manually.
+"""  # noqa: E501
+
+
+from __future__ import annotations
+import pprint
+import re  # noqa: F401
+import json
+
+from pydantic import BaseModel, ConfigDict, StrictInt, StrictStr
+from typing import Any, ClassVar, Dict, List, Optional
+from ncbi.datasets.openapi.models.ncbiprotddv2_chain_footprint import Ncbiprotddv2ChainFootprint
+from ncbi.datasets.openapi.models.ncbiprotddv2_vast_score import Ncbiprotddv2VastScore
+from typing import Optional, Set
+from typing_extensions import Self
+
+class Ncbiprotddv2SimilarStructureReport(BaseModel):
+    """
+    Ncbiprotddv2SimilarStructureReport
+    """ # noqa: E501
+    sdid: Optional[StrictInt] = None
+    structure_title: Optional[StrictStr] = None
+    protein_chain_name: Optional[StrictStr] = None
+    chain_id: Optional[StrictStr] = None
+    domain_number: Optional[StrictInt] = None
+    mmdb_id: Optional[StrictInt] = None
+    pdb_id: Optional[StrictStr] = None
+    vast_score: Optional[Ncbiprotddv2VastScore] = None
+    align_id: Optional[StrictInt] = None
+    superkingdom_id: Optional[StrictInt] = None
+    tax_id: Optional[StrictInt] = None
+    footprints: Optional[List[Ncbiprotddv2ChainFootprint]] = None
+    __properties: ClassVar[List[str]] = ["sdid", "structure_title", "protein_chain_name", "chain_id", "domain_number", "mmdb_id", "pdb_id", "vast_score", "align_id", "superkingdom_id", "tax_id", "footprints"]
+
+    model_config = ConfigDict(
+        populate_by_name=True,
+        validate_assignment=True,
+        protected_namespaces=(),
+    )
+
+
+    def to_str(self) -> str:
+        """Returns the string representation of the model using alias"""
+        return pprint.pformat(self.model_dump(by_alias=True))
+
+    def to_json(self) -> str:
+        """Returns the JSON representation of the model using alias"""
+        # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead
+        return json.dumps(self.to_dict())
+
+    @classmethod
+    def from_json(cls, json_str: str) -> Optional[Self]:
+        """Create an instance of Ncbiprotddv2SimilarStructureReport from a JSON string"""
+        return cls.from_dict(json.loads(json_str))
+
+    def to_dict(self) -> Dict[str, Any]:
+        """Return the dictionary representation of the model using alias.
+
+        This has the following differences from calling pydantic's
+        `self.model_dump(by_alias=True)`:
+
+        * `None` is only added to the output dict for nullable fields that
+          were set at model initialization. Other fields with value `None`
+          are ignored.
+        """
+        excluded_fields: Set[str] = set([
+        ])
+
+        _dict = self.model_dump(
+            by_alias=True,
+            exclude=excluded_fields,
+            exclude_none=True,
+        )
+        # override the default output from pydantic by calling `to_dict()` of vast_score
+        if self.vast_score:
+            _dict['vast_score'] = self.vast_score.to_dict()
+        # override the default output from pydantic by calling `to_dict()` of each item in footprints (list)
+        _items = []
+        if self.footprints:
+            for _item_footprints in self.footprints:
+                if _item_footprints:
+                    _items.append(_item_footprints.to_dict())
+            _dict['footprints'] = _items
+        return _dict
+
+    @classmethod
+    def from_dict(cls, obj: Optional[Dict[str, Any]]) -> Optional[Self]:
+        """Create an instance of Ncbiprotddv2SimilarStructureReport from a dict"""
+        if obj is None:
+            return None
+
+        if not isinstance(obj, dict):
+            return cls.model_validate(obj)
+
+        _obj = cls.model_validate({
+            "sdid": obj.get("sdid"),
+            "structure_title": obj.get("structure_title"),
+            "protein_chain_name": obj.get("protein_chain_name"),
+            "chain_id": obj.get("chain_id"),
+            "domain_number": obj.get("domain_number"),
+            "mmdb_id": obj.get("mmdb_id"),
+            "pdb_id": obj.get("pdb_id"),
+            "vast_score": Ncbiprotddv2VastScore.from_dict(obj["vast_score"]) if obj.get("vast_score") is not None else None,
+            "align_id": obj.get("align_id"),
+            "superkingdom_id": obj.get("superkingdom_id"),
+            "tax_id": obj.get("tax_id"),
+            "footprints": [Ncbiprotddv2ChainFootprint.from_dict(_item) for _item in obj["footprints"]] if obj.get("footprints") is not None else None
+        })
+        return _obj
+
+

ncbi/datasets/openapi/models/ncbiprotddv2_similar_structure_report_page.py

@@ -0,0 +1,99 @@
+# coding: utf-8
+
+"""
+    NCBI Datasets API
+
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
+
+    The version of the OpenAPI document: v2
+    Generated by OpenAPI Generator (https://openapi-generator.tech)
+
+    Do not edit the class manually.
+"""  # noqa: E501
+
+
+from __future__ import annotations
+import pprint
+import re  # noqa: F401
+import json
+
+from pydantic import BaseModel, ConfigDict, StrictInt, StrictStr
+from typing import Any, ClassVar, Dict, List, Optional
+from ncbi.datasets.openapi.models.ncbiprotddv2_similar_structure_report import Ncbiprotddv2SimilarStructureReport
+from typing import Optional, Set
+from typing_extensions import Self
+
+class Ncbiprotddv2SimilarStructureReportPage(BaseModel):
+    """
+    Ncbiprotddv2SimilarStructureReportPage
+    """ # noqa: E501
+    similar_structures: Optional[List[Ncbiprotddv2SimilarStructureReport]] = None
+    next_page_token: Optional[StrictStr] = None
+    total_count: Optional[StrictInt] = None
+    __properties: ClassVar[List[str]] = ["similar_structures", "next_page_token", "total_count"]
+
+    model_config = ConfigDict(
+        populate_by_name=True,
+        validate_assignment=True,
+        protected_namespaces=(),
+    )
+
+
+    def to_str(self) -> str:
+        """Returns the string representation of the model using alias"""
+        return pprint.pformat(self.model_dump(by_alias=True))
+
+    def to_json(self) -> str:
+        """Returns the JSON representation of the model using alias"""
+        # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead
+        return json.dumps(self.to_dict())
+
+    @classmethod
+    def from_json(cls, json_str: str) -> Optional[Self]:
+        """Create an instance of Ncbiprotddv2SimilarStructureReportPage from a JSON string"""
+        return cls.from_dict(json.loads(json_str))
+
+    def to_dict(self) -> Dict[str, Any]:
+        """Return the dictionary representation of the model using alias.
+
+        This has the following differences from calling pydantic's
+        `self.model_dump(by_alias=True)`:
+
+        * `None` is only added to the output dict for nullable fields that
+          were set at model initialization. Other fields with value `None`
+          are ignored.
+        """
+        excluded_fields: Set[str] = set([
+        ])
+
+        _dict = self.model_dump(
+            by_alias=True,
+            exclude=excluded_fields,
+            exclude_none=True,
+        )
+        # override the default output from pydantic by calling `to_dict()` of each item in similar_structures (list)
+        _items = []
+        if self.similar_structures:
+            for _item_similar_structures in self.similar_structures:
+                if _item_similar_structures:
+                    _items.append(_item_similar_structures.to_dict())
+            _dict['similar_structures'] = _items
+        return _dict
+
+    @classmethod
+    def from_dict(cls, obj: Optional[Dict[str, Any]]) -> Optional[Self]:
+        """Create an instance of Ncbiprotddv2SimilarStructureReportPage from a dict"""
+        if obj is None:
+            return None
+
+        if not isinstance(obj, dict):
+            return cls.model_validate(obj)
+
+        _obj = cls.model_validate({
+            "similar_structures": [Ncbiprotddv2SimilarStructureReport.from_dict(_item) for _item in obj["similar_structures"]] if obj.get("similar_structures") is not None else None,
+            "next_page_token": obj.get("next_page_token"),
+            "total_count": obj.get("total_count")
+        })
+        return _obj
+
+

ncbi/datasets/openapi/models/ncbiprotddv2_similar_structure_request.py

@@ -0,0 +1,97 @@
+# coding: utf-8
+
+"""
+    NCBI Datasets API
+
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
+
+    The version of the OpenAPI document: v2
+    Generated by OpenAPI Generator (https://openapi-generator.tech)
+
+    Do not edit the class manually.
+"""  # noqa: E501
+
+
+from __future__ import annotations
+import pprint
+import re  # noqa: F401
+import json
+
+from pydantic import BaseModel, ConfigDict, StrictInt, StrictStr
+from typing import Any, ClassVar, Dict, List, Optional
+from ncbi.datasets.openapi.models.ncbiprotddv2_redundancy_level import Ncbiprotddv2RedundancyLevel
+from ncbi.datasets.openapi.models.ncbiprotddv2_sort_by_id import Ncbiprotddv2SortById
+from typing import Optional, Set
+from typing_extensions import Self
+
+class Ncbiprotddv2SimilarStructureRequest(BaseModel):
+    """
+    Ncbiprotddv2SimilarStructureRequest
+    """ # noqa: E501
+    sdid: Optional[StrictStr] = None
+    page_token: Optional[StrictStr] = None
+    redundancy_level: Optional[Ncbiprotddv2RedundancyLevel] = Ncbiprotddv2RedundancyLevel.ALL_SEQUENCES
+    sort_by: Optional[Ncbiprotddv2SortById] = Ncbiprotddv2SortById.NONE
+    hits_per_page: Optional[StrictInt] = None
+    __properties: ClassVar[List[str]] = ["sdid", "page_token", "redundancy_level", "sort_by", "hits_per_page"]
+
+    model_config = ConfigDict(
+        populate_by_name=True,
+        validate_assignment=True,
+        protected_namespaces=(),
+    )
+
+
+    def to_str(self) -> str:
+        """Returns the string representation of the model using alias"""
+        return pprint.pformat(self.model_dump(by_alias=True))
+
+    def to_json(self) -> str:
+        """Returns the JSON representation of the model using alias"""
+        # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead
+        return json.dumps(self.to_dict())
+
+    @classmethod
+    def from_json(cls, json_str: str) -> Optional[Self]:
+        """Create an instance of Ncbiprotddv2SimilarStructureRequest from a JSON string"""
+        return cls.from_dict(json.loads(json_str))
+
+    def to_dict(self) -> Dict[str, Any]:
+        """Return the dictionary representation of the model using alias.
+
+        This has the following differences from calling pydantic's
+        `self.model_dump(by_alias=True)`:
+
+        * `None` is only added to the output dict for nullable fields that
+          were set at model initialization. Other fields with value `None`
+          are ignored.
+        """
+        excluded_fields: Set[str] = set([
+        ])
+
+        _dict = self.model_dump(
+            by_alias=True,
+            exclude=excluded_fields,
+            exclude_none=True,
+        )
+        return _dict
+
+    @classmethod
+    def from_dict(cls, obj: Optional[Dict[str, Any]]) -> Optional[Self]:
+        """Create an instance of Ncbiprotddv2SimilarStructureRequest from a dict"""
+        if obj is None:
+            return None
+
+        if not isinstance(obj, dict):
+            return cls.model_validate(obj)
+
+        _obj = cls.model_validate({
+            "sdid": obj.get("sdid"),
+            "page_token": obj.get("page_token"),
+            "redundancy_level": obj.get("redundancy_level") if obj.get("redundancy_level") is not None else Ncbiprotddv2RedundancyLevel.ALL_SEQUENCES,
+            "sort_by": obj.get("sort_by") if obj.get("sort_by") is not None else Ncbiprotddv2SortById.NONE,
+            "hits_per_page": obj.get("hits_per_page")
+        })
+        return _obj
+
+

ncbi/datasets/openapi/models/ncbiprotddv2_sort_by_id.py

@@ -0,0 +1,51 @@
+# coding: utf-8
+
+"""
+    NCBI Datasets API
+
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
+
+    The version of the OpenAPI document: v2
+    Generated by OpenAPI Generator (https://openapi-generator.tech)
+
+    Do not edit the class manually.
+"""  # noqa: E501
+
+
+from __future__ import annotations
+import json
+from enum import Enum
+from typing_extensions import Self
+
+
+class Ncbiprotddv2SortById(str, Enum):
+    """
+    Ncbiprotddv2SortById
+    """
+
+    """
+    allowed enum values
+    """
+    NONE = 'NONE'
+    VAST_SCORE = 'VAST_SCORE'
+    P_VALUE = 'P_VALUE'
+    RMSD = 'RMSD'
+    ALIGNMENT_LENGTH = 'ALIGNMENT_LENGTH'
+    PCT_IDENTITY = 'PCT_IDENTITY'
+    ACCESSION = 'ACCESSION'
+    SDID = 'SDID'
+    ALIGNMENT_ID = 'ALIGNMENT_ID'
+    PDB_ID = 'PDB_ID'
+    CHAIN_NAME = 'CHAIN_NAME'
+    DOMAIN_NUMBER = 'DOMAIN_NUMBER'
+    DESCRIPTION = 'DESCRIPTION'
+    TAXONOMY_ID = 'TAXONOMY_ID'
+    SUPERKINGDOM_ID = 'SUPERKINGDOM_ID'
+    DOMAIN_NAME = 'DOMAIN_NAME'
+
+    @classmethod
+    def from_json(cls, json_str: str) -> Self:
+        """Create an instance of Ncbiprotddv2SortById from a JSON string"""
+        return cls(json.loads(json_str))
+
+

ncbi/datasets/openapi/models/ncbiprotddv2_structure_data_report.py

@@ -0,0 +1,141 @@
+# coding: utf-8
+
+"""
+    NCBI Datasets API
+
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
+
+    The version of the OpenAPI document: v2
+    Generated by OpenAPI Generator (https://openapi-generator.tech)
+
+    Do not edit the class manually.
+"""  # noqa: E501
+
+
+from __future__ import annotations
+import pprint
+import re  # noqa: F401
+import json
+
+from pydantic import BaseModel, ConfigDict, StrictBool, StrictInt, StrictStr
+from typing import Any, ClassVar, Dict, List, Optional
+from ncbi.datasets.openapi.models.ncbiprotddv2_structure_data_report_biounit_chain import Ncbiprotddv2StructureDataReportBiounitChain
+from ncbi.datasets.openapi.models.ncbiprotddv2_structure_data_report_experiment import Ncbiprotddv2StructureDataReportExperiment
+from ncbi.datasets.openapi.models.ncbiprotddv2_structure_data_report_ligand_chain import Ncbiprotddv2StructureDataReportLigandChain
+from typing import Optional, Set
+from typing_extensions import Self
+
+class Ncbiprotddv2StructureDataReport(BaseModel):
+    """
+    Ncbiprotddv2StructureDataReport
+    """ # noqa: E501
+    pdb_id: Optional[StrictStr] = None
+    mmdb_id: Optional[StrictInt] = None
+    is_obsolete: Optional[StrictBool] = None
+    publication_pmid: Optional[List[StrictInt]] = None
+    deposition_date: Optional[StrictStr] = None
+    update_date: Optional[StrictStr] = None
+    experiment: Optional[Ncbiprotddv2StructureDataReportExperiment] = None
+    chains: Optional[List[Ncbiprotddv2StructureDataReportBiounitChain]] = None
+    ligand_chains: Optional[List[Ncbiprotddv2StructureDataReportLigandChain]] = None
+    asymmetric_chains: Optional[List[Ncbiprotddv2StructureDataReportBiounitChain]] = None
+    asymmetric_ligands: Optional[List[Ncbiprotddv2StructureDataReportLigandChain]] = None
+    __properties: ClassVar[List[str]] = ["pdb_id", "mmdb_id", "is_obsolete", "publication_pmid", "deposition_date", "update_date", "experiment", "chains", "ligand_chains", "asymmetric_chains", "asymmetric_ligands"]
+
+    model_config = ConfigDict(
+        populate_by_name=True,
+        validate_assignment=True,
+        protected_namespaces=(),
+    )
+
+
+    def to_str(self) -> str:
+        """Returns the string representation of the model using alias"""
+        return pprint.pformat(self.model_dump(by_alias=True))
+
+    def to_json(self) -> str:
+        """Returns the JSON representation of the model using alias"""
+        # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead
+        return json.dumps(self.to_dict())
+
+    @classmethod
+    def from_json(cls, json_str: str) -> Optional[Self]:
+        """Create an instance of Ncbiprotddv2StructureDataReport from a JSON string"""
+        return cls.from_dict(json.loads(json_str))
+
+    def to_dict(self) -> Dict[str, Any]:
+        """Return the dictionary representation of the model using alias.
+
+        This has the following differences from calling pydantic's
+        `self.model_dump(by_alias=True)`:
+
+        * `None` is only added to the output dict for nullable fields that
+          were set at model initialization. Other fields with value `None`
+          are ignored.
+        """
+        excluded_fields: Set[str] = set([
+        ])
+
+        _dict = self.model_dump(
+            by_alias=True,
+            exclude=excluded_fields,
+            exclude_none=True,
+        )
+        # override the default output from pydantic by calling `to_dict()` of experiment
+        if self.experiment:
+            _dict['experiment'] = self.experiment.to_dict()
+        # override the default output from pydantic by calling `to_dict()` of each item in chains (list)
+        _items = []
+        if self.chains:
+            for _item_chains in self.chains:
+                if _item_chains:
+                    _items.append(_item_chains.to_dict())
+            _dict['chains'] = _items
+        # override the default output from pydantic by calling `to_dict()` of each item in ligand_chains (list)
+        _items = []
+        if self.ligand_chains:
+            for _item_ligand_chains in self.ligand_chains:
+                if _item_ligand_chains:
+                    _items.append(_item_ligand_chains.to_dict())
+            _dict['ligand_chains'] = _items
+        # override the default output from pydantic by calling `to_dict()` of each item in asymmetric_chains (list)
+        _items = []
+        if self.asymmetric_chains:
+            for _item_asymmetric_chains in self.asymmetric_chains:
+                if _item_asymmetric_chains:
+                    _items.append(_item_asymmetric_chains.to_dict())
+            _dict['asymmetric_chains'] = _items
+        # override the default output from pydantic by calling `to_dict()` of each item in asymmetric_ligands (list)
+        _items = []
+        if self.asymmetric_ligands:
+            for _item_asymmetric_ligands in self.asymmetric_ligands:
+                if _item_asymmetric_ligands:
+                    _items.append(_item_asymmetric_ligands.to_dict())
+            _dict['asymmetric_ligands'] = _items
+        return _dict
+
+    @classmethod
+    def from_dict(cls, obj: Optional[Dict[str, Any]]) -> Optional[Self]:
+        """Create an instance of Ncbiprotddv2StructureDataReport from a dict"""
+        if obj is None:
+            return None
+
+        if not isinstance(obj, dict):
+            return cls.model_validate(obj)
+
+        _obj = cls.model_validate({
+            "pdb_id": obj.get("pdb_id"),
+            "mmdb_id": obj.get("mmdb_id"),
+            "is_obsolete": obj.get("is_obsolete"),
+            "publication_pmid": obj.get("publication_pmid"),
+            "deposition_date": obj.get("deposition_date"),
+            "update_date": obj.get("update_date"),
+            "experiment": Ncbiprotddv2StructureDataReportExperiment.from_dict(obj["experiment"]) if obj.get("experiment") is not None else None,
+            "chains": [Ncbiprotddv2StructureDataReportBiounitChain.from_dict(_item) for _item in obj["chains"]] if obj.get("chains") is not None else None,
+            "ligand_chains": [Ncbiprotddv2StructureDataReportLigandChain.from_dict(_item) for _item in obj["ligand_chains"]] if obj.get("ligand_chains") is not None else None,
+            "asymmetric_chains": [Ncbiprotddv2StructureDataReportBiounitChain.from_dict(_item) for _item in obj["asymmetric_chains"]] if obj.get("asymmetric_chains") is not None else None,
+            "asymmetric_ligands": [Ncbiprotddv2StructureDataReportLigandChain.from_dict(_item) for _item in obj["asymmetric_ligands"]] if obj.get("asymmetric_ligands") is not None else None
+        })
+        return _obj
+
+

ncbi/datasets/openapi/models/ncbiprotddv2_structure_data_report_biounit_chain.py

@@ -0,0 +1,94 @@
+# coding: utf-8
+
+"""
+    NCBI Datasets API
+
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
+
+    The version of the OpenAPI document: v2
+    Generated by OpenAPI Generator (https://openapi-generator.tech)
+
+    Do not edit the class manually.
+"""  # noqa: E501
+
+
+from __future__ import annotations
+import pprint
+import re  # noqa: F401
+import json
+
+from pydantic import BaseModel, ConfigDict, StrictInt, StrictStr
+from typing import Any, ClassVar, Dict, List, Optional
+from ncbi.datasets.openapi.models.ncbiprotddv2_structure_data_report_kind import Ncbiprotddv2StructureDataReportKind
+from typing import Optional, Set
+from typing_extensions import Self
+
+class Ncbiprotddv2StructureDataReportBiounitChain(BaseModel):
+    """
+    Ncbiprotddv2StructureDataReportBiounitChain
+    """ # noqa: E501
+    chain_id: Optional[StrictStr] = None
+    tax_id: Optional[StrictInt] = None
+    kind: Optional[Ncbiprotddv2StructureDataReportKind] = Ncbiprotddv2StructureDataReportKind.DNA
+    molecule_group: Optional[StrictInt] = None
+    __properties: ClassVar[List[str]] = ["chain_id", "tax_id", "kind", "molecule_group"]
+
+    model_config = ConfigDict(
+        populate_by_name=True,
+        validate_assignment=True,
+        protected_namespaces=(),
+    )
+
+
+    def to_str(self) -> str:
+        """Returns the string representation of the model using alias"""
+        return pprint.pformat(self.model_dump(by_alias=True))
+
+    def to_json(self) -> str:
+        """Returns the JSON representation of the model using alias"""
+        # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead
+        return json.dumps(self.to_dict())
+
+    @classmethod
+    def from_json(cls, json_str: str) -> Optional[Self]:
+        """Create an instance of Ncbiprotddv2StructureDataReportBiounitChain from a JSON string"""
+        return cls.from_dict(json.loads(json_str))
+
+    def to_dict(self) -> Dict[str, Any]:
+        """Return the dictionary representation of the model using alias.
+
+        This has the following differences from calling pydantic's
+        `self.model_dump(by_alias=True)`:
+
+        * `None` is only added to the output dict for nullable fields that
+          were set at model initialization. Other fields with value `None`
+          are ignored.
+        """
+        excluded_fields: Set[str] = set([
+        ])
+
+        _dict = self.model_dump(
+            by_alias=True,
+            exclude=excluded_fields,
+            exclude_none=True,
+        )
+        return _dict
+
+    @classmethod
+    def from_dict(cls, obj: Optional[Dict[str, Any]]) -> Optional[Self]:
+        """Create an instance of Ncbiprotddv2StructureDataReportBiounitChain from a dict"""
+        if obj is None:
+            return None
+
+        if not isinstance(obj, dict):
+            return cls.model_validate(obj)
+
+        _obj = cls.model_validate({
+            "chain_id": obj.get("chain_id"),
+            "tax_id": obj.get("tax_id"),
+            "kind": obj.get("kind") if obj.get("kind") is not None else Ncbiprotddv2StructureDataReportKind.DNA,
+            "molecule_group": obj.get("molecule_group")
+        })
+        return _obj
+
+