ncbi-datasets-pyclient 18.4.0__py3-none-any.whl → 18.13.0__py3-none-any.whl

ncbi/datasets/openapi/models/v2reports_ani_type_category.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.
@@ -35,7 +34,7 @@ class V2reportsANITypeCategory(str, Enum):
     PATHOVAR = 'pathovar'
     REFTYPE = 'reftype'
     SUSPECTED_TYPE = 'suspected_type'
-    SYNTYPE = 'syntype'
+    SYNONYM = 'synonym'
     TYPE = 'type'
 
     @classmethod

ncbi/datasets/openapi/models/v2reports_annotation.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_annotation_info.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_assembly_data_report.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.
@@ -41,7 +40,7 @@ class V2reportsAssemblyDataReport(BaseModel):
     accession: Optional[StrictStr] = None
     current_accession: Optional[StrictStr] = None
     paired_accession: Optional[StrictStr] = None
-    source_database: Optional[V2reportsSourceDatabase] = None
+    source_database: Optional[V2reportsSourceDatabase] = V2reportsSourceDatabase.SOURCE_DATABASE_UNSPECIFIED
     organism: Optional[V2reportsOrganism] = None
     assembly_info: Optional[V2reportsAssemblyInfo] = None
     assembly_stats: Optional[V2reportsAssemblyStats] = None
@@ -146,7 +145,7 @@ class V2reportsAssemblyDataReport(BaseModel):
             "accession": obj.get("accession"),
             "current_accession": obj.get("current_accession"),
             "paired_accession": obj.get("paired_accession"),
-            "source_database": obj.get("source_database"),
+            "source_database": obj.get("source_database") if obj.get("source_database") is not None else V2reportsSourceDatabase.SOURCE_DATABASE_UNSPECIFIED,
             "organism": V2reportsOrganism.from_dict(obj["organism"]) if obj.get("organism") is not None else None,
             "assembly_info": V2reportsAssemblyInfo.from_dict(obj["assembly_info"]) if obj.get("assembly_info") is not None else None,
             "assembly_stats": V2reportsAssemblyStats.from_dict(obj["assembly_stats"]) if obj.get("assembly_stats") is not None else None,

ncbi/datasets/openapi/models/v2reports_assembly_data_report_page.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.
@@ -31,7 +30,7 @@ class V2reportsAssemblyDataReportPage(BaseModel):
     V2reportsAssemblyDataReportPage
     """ # noqa: E501
     reports: Optional[List[V2reportsAssemblyDataReport]] = None
-    content_type: Optional[V2reportsContentType] = None
+    content_type: Optional[V2reportsContentType] = V2reportsContentType.COMPLETE
     total_count: Optional[StrictInt] = None
     next_page_token: Optional[StrictStr] = None
     messages: Optional[List[V2reportsMessage]] = None
@@ -103,7 +102,7 @@ class V2reportsAssemblyDataReportPage(BaseModel):
 
         _obj = cls.model_validate({
             "reports": [V2reportsAssemblyDataReport.from_dict(_item) for _item in obj["reports"]] if obj.get("reports") is not None else None,
-            "content_type": obj.get("content_type"),
+            "content_type": obj.get("content_type") if obj.get("content_type") is not None else V2reportsContentType.COMPLETE,
             "total_count": obj.get("total_count"),
             "next_page_token": obj.get("next_page_token"),
             "messages": [V2reportsMessage.from_dict(_item) for _item in obj["messages"]] if obj.get("messages") is not None else None

ncbi/datasets/openapi/models/v2reports_assembly_info.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.
@@ -35,7 +34,7 @@ class V2reportsAssemblyInfo(BaseModel):
     V2reportsAssemblyInfo
     """ # noqa: E501
     assembly_level: Optional[StrictStr] = None
-    assembly_status: Optional[V2reportsAssemblyStatus] = None
+    assembly_status: Optional[V2reportsAssemblyStatus] = V2reportsAssemblyStatus.ASSEMBLY_STATUS_UNKNOWN
     paired_assembly: Optional[V2reportsPairedAssembly] = None
     assembly_name: Optional[StrictStr] = None
     assembly_long_name: Optional[StrictStr] = None
@@ -59,7 +58,7 @@ class V2reportsAssemblyInfo(BaseModel):
     blast_url: Optional[StrictStr] = None
     comments: Optional[StrictStr] = None
     suppression_reason: Optional[StrictStr] = None
-    diploid_role: Optional[V2reportsLinkedAssemblyType] = None
+    diploid_role: Optional[V2reportsLinkedAssemblyType] = V2reportsLinkedAssemblyType.LINKED_ASSEMBLY_TYPE_UNKNOWN
     __properties: ClassVar[List[str]] = ["assembly_level", "assembly_status", "paired_assembly", "assembly_name", "assembly_long_name", "assembly_type", "bioproject_lineage", "bioproject_accession", "submission_date", "release_date", "description", "submitter", "refseq_category", "synonym", "linked_assembly", "linked_assemblies", "atypical", "genome_notes", "sequencing_tech", "assembly_method", "grouping_method", "biosample", "blast_url", "comments", "suppression_reason", "diploid_role"]
 
     model_config = ConfigDict(
@@ -137,7 +136,7 @@ class V2reportsAssemblyInfo(BaseModel):
 
         _obj = cls.model_validate({
             "assembly_level": obj.get("assembly_level"),
-            "assembly_status": obj.get("assembly_status"),
+            "assembly_status": obj.get("assembly_status") if obj.get("assembly_status") is not None else V2reportsAssemblyStatus.ASSEMBLY_STATUS_UNKNOWN,
             "paired_assembly": V2reportsPairedAssembly.from_dict(obj["paired_assembly"]) if obj.get("paired_assembly") is not None else None,
             "assembly_name": obj.get("assembly_name"),
             "assembly_long_name": obj.get("assembly_long_name"),
@@ -161,7 +160,7 @@ class V2reportsAssemblyInfo(BaseModel):
             "blast_url": obj.get("blast_url"),
             "comments": obj.get("comments"),
             "suppression_reason": obj.get("suppression_reason"),
-            "diploid_role": obj.get("diploid_role")
+            "diploid_role": obj.get("diploid_role") if obj.get("diploid_role") is not None else V2reportsLinkedAssemblyType.LINKED_ASSEMBLY_TYPE_UNKNOWN
         })
         return _obj
 

ncbi/datasets/openapi/models/v2reports_assembly_level.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_assembly_revision.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.
@@ -18,7 +17,7 @@ import pprint
 import re  # noqa: F401
 import json
 
-from pydantic import BaseModel, ConfigDict, StrictStr
+from pydantic import BaseModel, ConfigDict, StrictBool, StrictStr
 from typing import Any, ClassVar, Dict, List, Optional
 from ncbi.datasets.openapi.models.v2reports_assembly_level import V2reportsAssemblyLevel
 from typing import Optional, Set
@@ -31,11 +30,12 @@ class V2reportsAssemblyRevision(BaseModel):
     genbank_accession: Optional[StrictStr] = None
     refseq_accession: Optional[StrictStr] = None
     assembly_name: Optional[StrictStr] = None
-    assembly_level: Optional[V2reportsAssemblyLevel] = None
+    assembly_level: Optional[V2reportsAssemblyLevel] = V2reportsAssemblyLevel.CHROMOSOME
     release_date: Optional[StrictStr] = None
     submission_date: Optional[StrictStr] = None
     sequencing_technology: Optional[StrictStr] = None
-    __properties: ClassVar[List[str]] = ["genbank_accession", "refseq_accession", "assembly_name", "assembly_level", "release_date", "submission_date", "sequencing_technology"]
+    identical: Optional[StrictBool] = None
+    __properties: ClassVar[List[str]] = ["genbank_accession", "refseq_accession", "assembly_name", "assembly_level", "release_date", "submission_date", "sequencing_technology", "identical"]
 
     model_config = ConfigDict(
         populate_by_name=True,
@@ -91,10 +91,11 @@ class V2reportsAssemblyRevision(BaseModel):
             "genbank_accession": obj.get("genbank_accession"),
             "refseq_accession": obj.get("refseq_accession"),
             "assembly_name": obj.get("assembly_name"),
-            "assembly_level": obj.get("assembly_level"),
+            "assembly_level": obj.get("assembly_level") if obj.get("assembly_level") is not None else V2reportsAssemblyLevel.CHROMOSOME,
             "release_date": obj.get("release_date"),
             "submission_date": obj.get("submission_date"),
-            "sequencing_technology": obj.get("sequencing_technology")
+            "sequencing_technology": obj.get("sequencing_technology"),
+            "identical": obj.get("identical")
         })
         return _obj
 

ncbi/datasets/openapi/models/v2reports_assembly_stats.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.
@@ -38,11 +37,12 @@ class V2reportsAssemblyStats(BaseModel):
     scaffold_l50: Optional[StrictInt] = None
     gaps_between_scaffolds_count: Optional[StrictInt] = None
     number_of_component_sequences: Optional[StrictInt] = None
+    atgc_count: Optional[StrictStr] = None
     gc_count: Optional[StrictStr] = None
     gc_percent: Optional[Union[StrictFloat, StrictInt]] = None
     genome_coverage: Optional[StrictStr] = None
     number_of_organelles: Optional[StrictInt] = None
-    __properties: ClassVar[List[str]] = ["total_number_of_chromosomes", "total_sequence_length", "total_ungapped_length", "number_of_contigs", "contig_n50", "contig_l50", "number_of_scaffolds", "scaffold_n50", "scaffold_l50", "gaps_between_scaffolds_count", "number_of_component_sequences", "gc_count", "gc_percent", "genome_coverage", "number_of_organelles"]
+    __properties: ClassVar[List[str]] = ["total_number_of_chromosomes", "total_sequence_length", "total_ungapped_length", "number_of_contigs", "contig_n50", "contig_l50", "number_of_scaffolds", "scaffold_n50", "scaffold_l50", "gaps_between_scaffolds_count", "number_of_component_sequences", "atgc_count", "gc_count", "gc_percent", "genome_coverage", "number_of_organelles"]
 
     model_config = ConfigDict(
         populate_by_name=True,
@@ -106,6 +106,7 @@ class V2reportsAssemblyStats(BaseModel):
             "scaffold_l50": obj.get("scaffold_l50"),
             "gaps_between_scaffolds_count": obj.get("gaps_between_scaffolds_count"),
             "number_of_component_sequences": obj.get("number_of_component_sequences"),
+            "atgc_count": obj.get("atgc_count"),
             "gc_count": obj.get("gc_count"),
             "gc_percent": obj.get("gc_percent"),
             "genome_coverage": obj.get("genome_coverage"),

ncbi/datasets/openapi/models/v2reports_assembly_status.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_atypical_info.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_average_nucleotide_identity.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.
@@ -31,11 +30,11 @@ class V2reportsAverageNucleotideIdentity(BaseModel):
     """
     V2reportsAverageNucleotideIdentity
     """ # noqa: E501
-    taxonomy_check_status: Optional[V2reportsAverageNucleotideIdentityTaxonomyCheckStatus] = None
-    match_status: Optional[V2reportsAverageNucleotideIdentityMatchStatus] = None
+    taxonomy_check_status: Optional[V2reportsAverageNucleotideIdentityTaxonomyCheckStatus] = V2reportsAverageNucleotideIdentityTaxonomyCheckStatus.TAXONOMY_CHECK_STATUS_UNKNOWN
+    match_status: Optional[V2reportsAverageNucleotideIdentityMatchStatus] = V2reportsAverageNucleotideIdentityMatchStatus.BEST_MATCH_STATUS_UNKNOWN
     submitted_organism: Optional[StrictStr] = None
     submitted_species: Optional[StrictStr] = None
-    category: Optional[V2reportsANITypeCategory] = None
+    category: Optional[V2reportsANITypeCategory] = V2reportsANITypeCategory.ANI_CATEGORY_UNKNOWN
     submitted_ani_match: Optional[V2reportsANIMatch] = None
     best_ani_match: Optional[V2reportsANIMatch] = None
     comment: Optional[StrictStr] = None
@@ -98,11 +97,11 @@ class V2reportsAverageNucleotideIdentity(BaseModel):
             return cls.model_validate(obj)
 
         _obj = cls.model_validate({
-            "taxonomy_check_status": obj.get("taxonomy_check_status"),
-            "match_status": obj.get("match_status"),
+            "taxonomy_check_status": obj.get("taxonomy_check_status") if obj.get("taxonomy_check_status") is not None else V2reportsAverageNucleotideIdentityTaxonomyCheckStatus.TAXONOMY_CHECK_STATUS_UNKNOWN,
+            "match_status": obj.get("match_status") if obj.get("match_status") is not None else V2reportsAverageNucleotideIdentityMatchStatus.BEST_MATCH_STATUS_UNKNOWN,
             "submitted_organism": obj.get("submitted_organism"),
             "submitted_species": obj.get("submitted_species"),
-            "category": obj.get("category"),
+            "category": obj.get("category") if obj.get("category") is not None else V2reportsANITypeCategory.ANI_CATEGORY_UNKNOWN,
             "submitted_ani_match": V2reportsANIMatch.from_dict(obj["submitted_ani_match"]) if obj.get("submitted_ani_match") is not None else None,
             "best_ani_match": V2reportsANIMatch.from_dict(obj["best_ani_match"]) if obj.get("best_ani_match") is not None else None,
             "comment": obj.get("comment")

ncbi/datasets/openapi/models/v2reports_average_nucleotide_identity_match_status.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_average_nucleotide_identity_taxonomy_check_status.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_bio_project.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_bio_project_lineage.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_bio_sample_attribute.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_bio_sample_contact.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_bio_sample_data_report.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_bio_sample_data_report_page.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_bio_sample_description.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_bio_sample_descriptor.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_bio_sample_id.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_bio_sample_owner.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_bio_sample_status.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_busco_stat.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_check_m.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_classification.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.
@@ -38,7 +37,8 @@ class V2reportsClassification(BaseModel):
     species: Optional[V2reportsTaxData] = None
     domain: Optional[V2reportsTaxData] = None
     realm: Optional[V2reportsTaxData] = None
-    __properties: ClassVar[List[str]] = ["superkingdom", "kingdom", "phylum", "class", "order", "family", "genus", "species", "domain", "realm"]
+    acellular_root: Optional[V2reportsTaxData] = None
+    __properties: ClassVar[List[str]] = ["superkingdom", "kingdom", "phylum", "class", "order", "family", "genus", "species", "domain", "realm", "acellular_root"]
 
     model_config = ConfigDict(
         populate_by_name=True,
@@ -109,6 +109,9 @@ class V2reportsClassification(BaseModel):
         # override the default output from pydantic by calling `to_dict()` of realm
         if self.realm:
             _dict['realm'] = self.realm.to_dict()
+        # override the default output from pydantic by calling `to_dict()` of acellular_root
+        if self.acellular_root:
+            _dict['acellular_root'] = self.acellular_root.to_dict()
         return _dict
 
     @classmethod
@@ -130,7 +133,8 @@ class V2reportsClassification(BaseModel):
             "genus": V2reportsTaxData.from_dict(obj["genus"]) if obj.get("genus") is not None else None,
             "species": V2reportsTaxData.from_dict(obj["species"]) if obj.get("species") is not None else None,
             "domain": V2reportsTaxData.from_dict(obj["domain"]) if obj.get("domain") is not None else None,
-            "realm": V2reportsTaxData.from_dict(obj["realm"]) if obj.get("realm") is not None else None
+            "realm": V2reportsTaxData.from_dict(obj["realm"]) if obj.get("realm") is not None else None,
+            "acellular_root": V2reportsTaxData.from_dict(obj["acellular_root"]) if obj.get("acellular_root") is not None else None
         })
         return _obj
 

ncbi/datasets/openapi/models/v2reports_collection_type.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

ncbi/datasets/openapi/models/v2reports_conserved_domain.py

@@ -3,10 +3,9 @@
 """
     NCBI Datasets API
 
-    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time. 
+    ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability. 
 
     The version of the OpenAPI document: v2
-    Contact: help@ncbi.nlm.nih.gov
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.